BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046446
         (244 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/235 (48%), Positives = 159/235 (67%), Gaps = 3/235 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK  +++ A+NLY+EML  G  P+V  + TL  GLF+  +V  A KLF  M+  G
Sbjct: 383 LINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+A+++ Y IF+DGLCKN  + E++ELF  L+    +L+I+ YSCLIDGLCK+G+LE A 
Sbjct: 443 VSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAW 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  L +  L  DVVTY+IMIHG    GQ+D A+ LF  MEEN   P++I + TL+ GF
Sbjct: 503 ELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGF 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS---LNSLPSFTVHE 233
              N+  +VI+LLHKM +K+V P+A+  +IVVD+L K+E     ++ LP F V  
Sbjct: 563 CEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPVQR 617



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 123/229 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK    + A  L+ EM ++G+ PDV+ ++TL  G     + +++  LFDEM   
Sbjct: 242 IIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQ 301

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+++ ID LCK G + E+ +L   +       ++  Y+ LIDG C  G L  A
Sbjct: 302 GVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSA 361

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF S+P   L  D ++Y+ +I+G     ++ +A +L+ +M +   +PNV T+GTL+ G
Sbjct: 362 RELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKG 421

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +  +     +L   MK   V  ++ I  I +D L KN+    ++  F
Sbjct: 422 LFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELF 470



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL N  C    +  AL   + +L +G  P+VV + TL  GL   H++  A +LF  MQ+ 
Sbjct: 131 ILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKL 190

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------RILKCELDIQAYSCLIDGLCKS 114
           G   +  TY   I GLC+ G +  +++L + +        + C+  +  YS +IDGLCK 
Sbjct: 191 GCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKV 250

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR + A ELF  +    ++ DV++YS +IHG    G+ D++  LF +M +  V P+++TF
Sbjct: 251 GREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTF 310

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             LI    +  + ++  +LL  M ++ ++P+    + ++D
Sbjct: 311 SVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLID 350



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K        +LY+EM   G+ PD+   + L   L  +++V  A      + R G
Sbjct: 97  LLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRG 156

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  I GLC    I E+  LF  ++ L C  +   Y  LI GLC++G + IAL
Sbjct: 157 YIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIAL 216

Query: 122 ELFHSL-----PRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +L   +       GV     V+TYSI+I GL   G+ D+A +LF +M+   + P+VI++ 
Sbjct: 217 KLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYS 276

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           TLIHGF    +  +   L  +M ++ V PD    S+++D L K
Sbjct: 277 TLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCK 319



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG------IKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           LI G C+   +  AL L+ EML+         KP V+ ++ +  GL ++ + + A +LF+
Sbjct: 202 LIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFE 261

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+  D  +Y+  I G C  G   +S  LF  +     + D+  +S LID LCK G
Sbjct: 262 EMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEG 321

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A +L   + +  +V +++TY+ +I G    G ++ A +LFL M    + P+ I++ 
Sbjct: 322 KVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYT 381

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
           TLI+G+ +  +  + + L ++M +    P+ +
Sbjct: 382 TLINGYCKTWKVKEAMNLYNEMLQVGKSPNVT 413



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   + + + +L+ EM+ +G++PD+V  + L   L +  +V  A KL + M + G
Sbjct: 278 LIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRG 337

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG C  G +  + ELF ++     E D  +Y+ LI+G CK+ +++ A+
Sbjct: 338 IVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAM 397

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ + +     +V TY  ++ GL+  G++  A  LF  M+   V+ N   +G  + G 
Sbjct: 398 NLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGL 457

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +   + +EL +++K  N   +    S ++D L K
Sbjct: 458 CKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCK 494



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 87/159 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I ++G CKN  +  A+ L++E+ S   K ++  ++ L  GL +  ++E A++LF+++ ++
Sbjct: 452 IFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQE 511

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY I I G CK G +  +  LF  +    C  DI AY+ L+ G C+  +LE  
Sbjct: 512 GLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEV 571

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++L H + +  +  +  + +I++  L  D +  K  DL 
Sbjct: 572 IKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLL 610



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           +AF  FD M R        ++   + GL K  +  +   L+  +R+     D+   S L 
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILA 133

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + LC   R+  AL     + R   + +VVTY+ +I GL  + ++ +A  LFL M++    
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAK 218
           PN +T+GTLI G  +    +  ++L  +M         N  P     SI++D L K
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCK 249


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 156/235 (66%), Gaps = 3/235 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK+  +  A  LY EM+ K I P V+ +NTL  GLF   +V  A+ LF EM+  
Sbjct: 383 VLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVH 442

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  ++ TY I +DGLCKN ++ E++ELF  L     +  IQ ++CLIDGLCK+ ++EIA
Sbjct: 443 DLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIA 502

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF+ L    L  +V+TY++MIHGL   GQ++ A DLFL MEE   APN++TF TL+ G
Sbjct: 503 RELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRG 562

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVH 232
           F + +E  KV+ELL +M EK+  PDAS +SIVVDLL+K+E     L+ LP+F   
Sbjct: 563 FCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQ 617



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 121/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C     EGA  L++EM+ +G+ P+VV  N L   L +  ++E A  L   M + G
Sbjct: 279 IIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRG 338

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + DT TY   IDG C  G I ++ +LF ++     E D  +Y+ LI+G CKSGR+  A 
Sbjct: 339 ESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAK 398

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +    ++  V+TY+ ++ GL+ +G++  A +LF +M+ + + P   T+  L+ G 
Sbjct: 399 KLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGL 458

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N  S+ +EL H ++  +  P   I + ++D L K
Sbjct: 459 CKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCK 495



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC   +++  L +  EML +G  P+ V   +L  GL    ++  A  L  +M R 
Sbjct: 132 ILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRM 191

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR------ILKCELDIQAYSCLIDGLCKS 114
           G   +  TY   ++GLC  G  + +V+L   +        +  + ++  Y  +ID LCK 
Sbjct: 192 GYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKD 251

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G ++   ELF  +    +  DVV YS +IHG+ + G+ + A  LF +M +  V PNV+TF
Sbjct: 252 GLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTF 311

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             LI    +  +  +   LL  M ++   PD    + ++D
Sbjct: 312 NVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLID 351



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     ++LY  M   G+ PD +  N L      +++V+    +  EM R G
Sbjct: 98  LLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRG 157

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +T T+T  + GLC    I E+  L R +  +    ++  Y  L++GLC +G   +A+
Sbjct: 158 HSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAV 217

Query: 122 ELFHSLPRG------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +L   +  G       +  ++V Y  +I  L  DG +DK  +LFL+M+   ++P+V+ + 
Sbjct: 218 KLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYS 277

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++IHG            L ++M ++ V P+    ++++D L K
Sbjct: 278 SIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCK 320



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 109/224 (48%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C    I  A  L  +M+  G +P+VV + TL  GL        A KL +EM    
Sbjct: 168 LVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGN 227

Query: 62  ------VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                 +  +   Y   ID LCK+G I +  ELF  ++      D+ AYS +I G+C +G
Sbjct: 228 GGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTG 287

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R E A  LF+ +    +  +VVT++++I  L   G+M++A+ L   M +   +P+  T+ 
Sbjct: 288 RWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYN 347

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           TLI GF          +L   M+ K +  DA   +++++   K+
Sbjct: 348 TLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKS 391



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 74/176 (42%), Gaps = 6/176 (3%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           AF +F+ +          ++   +  + K     + + L++ + ++    D    + LI+
Sbjct: 76  AFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILIN 135

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
             C   +++  L +   + R     + VT++ ++ GL    ++ +A  L   M      P
Sbjct: 136 CYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP 195

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKN------VMPDASIVSIVVDLLAKN 219
           NV+T+GTL++G          ++L  +M   N      + P+      ++D L K+
Sbjct: 196 NVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKD 251



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 63  AADTRTYTIFIDGLCKNGYI--VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           A D      F+   CK+G+I   E+  +F  L  ++    I +++ L+  + K  R    
Sbjct: 52  APDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDV 111

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L+  +    L  D +T +I+I+   N  ++D    +  +M     +PN +TF +L+ G
Sbjct: 112 ISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKG 171

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
               +  S+   LL KM      P+      +++ L    ++ N++ +  +HE
Sbjct: 172 LCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLC---MTGNTMLAVKLHE 221


>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 225

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 3/224 (1%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           +NLY+EML  G +P+   + TL  GLF+  +V  A KLF  ++  G++AD+  Y IF+DG
Sbjct: 1   MNLYNEMLQVGKRPNATTYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDG 60

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LCKNG + E++E F  L+    +LDI++Y+CLIDGLCK+G+LE A ELF  L +  L +D
Sbjct: 61  LCKNGCLYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSD 120

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTY+IMIHG    GQ+DKA+ LF  MEEN   P++IT+ TL+ GF + N+  +V++LLH
Sbjct: 121 VVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQSNKSDEVVKLLH 180

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHERQE 236
           KM ++++ PDA   +IV+D+L K+E     L+ LP F V ER+ 
Sbjct: 181 KMIQRDMSPDAISCNIVIDMLRKDEKYQECLDLLPRFLVQERRR 224



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 89/159 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I ++G CKN  +  A+  ++++ S  IK D+  +N L  GL +  ++E A++LF+++ ++
Sbjct: 56  IFLDGLCKNGCLYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKLYQE 115

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ +D  TY I I G CK G + ++  LF  +    C  DI  Y+ L+ G C+S + +  
Sbjct: 116 GLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQSNKSDEV 175

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++L H + +  +  D ++ +I+I  L  D +  +  DL 
Sbjct: 176 VKLLHKMIQRDMSPDAISCNIVIDMLRKDEKYQECLDLL 214


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 163/243 (67%), Gaps = 6/243 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGY K  ++E A+ LY+EML  G +P+V+ +++L  G+F   +V+ A KLF  M+  
Sbjct: 360 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH 419

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A ++ TY IF+DGLCKN  + E+++LF  L+    +L+I+  +CLIDGLCK+G+LE A
Sbjct: 420 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 479

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L       +VVTY+IMIHG   +GQ+DKA+ L   ME N   P++IT+ TL+ G
Sbjct: 480 WELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG 539

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHERQEE 237
           F   N+  +V++LLH+M +K+V PDA   SIVVD+L+K+E     L+ LP F +   Q+ 
Sbjct: 540 FYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPI---QKG 596

Query: 238 VDE 240
           VD+
Sbjct: 597 VDK 599



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K K      +LY++M   G+  D    N L   L  ++++   F  F  + R G
Sbjct: 75  LLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRG 134

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   I GLC    I E+  LF  ++ L C  D+  Y  LI GLC +G + IAL
Sbjct: 135 YSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIAL 194

Query: 122 ELFHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +L   +   +         +V+TY+I++ GL   G+ D+A  LF +M+   + P++I++ 
Sbjct: 195 KLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYN 254

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LIHGF    +  +   LL +M ++ + PD    ++++D L K
Sbjct: 255 SLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCK 297



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 6/244 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK    + A  L+ EM ++G+ P ++ +N+L  G     + E + +L DEM   
Sbjct: 220 IIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQ 279

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+ + ID LCK G ++E+ +L   +       D+  Y+ LI+G C  G L  A
Sbjct: 280 GLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSA 339

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF S+P      DV++Y+++I+G     ++++A  L+ +M      PNVIT+ +L+ G
Sbjct: 340 RELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKG 399

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
                +     +L   MK   +  ++    I +D L KN+    ++  FT      E+  
Sbjct: 400 IFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT------ELKS 453

Query: 241 SNVK 244
           SN K
Sbjct: 454 SNFK 457



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  C    +      ++ +L +G  P++V +NTL  GL   H++  A +LF  MQ+ 
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------RILKCELDIQAYSCLIDGLCKS 114
           G   D  TY   I GLC  G I  +++L + +        + C+ ++  Y+ ++DGLCK 
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR + A +LF  +    ++  +++Y+ +IHG    G+ +++  L  +M +  + P+++TF
Sbjct: 229 GREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTF 288

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             LI    +  +  +  +LL  M E  ++PD
Sbjct: 289 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 319



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           LI G C    I  A  L+  M   G  PDVV + TL  GL     +  A KL  EM  D 
Sbjct: 145 LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDI 204

Query: 61  -----GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                    +  TY I +DGLCK G   E+ +LF  ++       I +Y+ LI G C +G
Sbjct: 205 SRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAG 264

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           + E +  L   +    L  D+VT++++I  L  +G++ +A  L   M E+ + P+++T+ 
Sbjct: 265 KWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYN 324

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LI GF  + + +   EL   M  K   PD    +++++  +K
Sbjct: 325 SLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSK 367



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 10/218 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK------GIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           LI G C    I  AL L+ EML+         KP+V+ +N +  GL ++ + + A +LF+
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+     +Y   I G C  G   ES  L   +     + D+  ++ LID LCK G
Sbjct: 240 EMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEG 299

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A +L   +    +V D+VTY+ +I G    G ++ A +LF+ M      P+VI++ 
Sbjct: 300 KVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYN 359

Query: 176 TLIHGFIRINEPSKVIELLHKM----KEKNVMPDASIV 209
            LI+G+ +  +  + ++L ++M    K  NV+   S++
Sbjct: 360 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 397


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 163/243 (67%), Gaps = 6/243 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGY K  ++E A+ LY+EML  G +P+V+ +++L  G+F   +V+ A KLF  M+  
Sbjct: 335 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH 394

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A ++ TY IF+DGLCKN  + E+++LF  L+    +L+I+  +CLIDGLCK+G+LE A
Sbjct: 395 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 454

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L       +VVTY+IMIHG   +GQ+DKA+ L   ME N   P++IT+ TL+ G
Sbjct: 455 WELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG 514

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHERQEE 237
           F   N+  +V++LLH+M +K+V PDA   SIVVD+L+K+E     L+ LP F +   Q+ 
Sbjct: 515 FYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPI---QKG 571

Query: 238 VDE 240
           VD+
Sbjct: 572 VDK 574



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 16/234 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  C    +      ++ +L +G  P++V +NTL  GL   H++  A +LF  MQ+ 
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------RILKCELDIQAYSCLIDGLCKS 114
           G   D  TY   I GLC  G I  +++L + +        + C+ ++  Y+ ++DGLCK 
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 115 GRLEIALELFHSL-PRGV---------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           GR + A +LF  +  +G+         L  D+VT++++I  L  +G++ +A  L   M E
Sbjct: 229 GREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIE 288

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + P+++T+ +LI GF  + + +   EL   M  K   PD    +++++  +K
Sbjct: 289 SGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSK 342



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 22/259 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK------GIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           LI G C    I  AL L+ EML+         KP+V+ +N +  GL ++ + + A +LF+
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239

Query: 56  EMQRDGV----------AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           EM+  G+            D  T+ + ID LCK G ++E+ +L   +       D+  Y+
Sbjct: 240 EMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYN 299

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI+G C  G L  A ELF S+P      DV++Y+++I+G     ++++A  L+ +M   
Sbjct: 300 SLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLV 359

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
              PNVIT+ +L+ G     +     +L   MK   +  ++    I +D L KN+    +
Sbjct: 360 GKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEA 419

Query: 226 LPSFTVHERQEEVDESNVK 244
           +  FT      E+  SN K
Sbjct: 420 MKLFT------ELKSSNFK 432



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 16/220 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K K      +LY++M   G+  D    N L   L  ++++   F  F  + R G
Sbjct: 75  LLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRG 134

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   I GLC    I E+  LF  ++ L C  D+  Y  LI GLC +G + IAL
Sbjct: 135 YSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIAL 194

Query: 122 ELFHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN----- 170
           +L   +   +         +V+TY+I++ GL   G+ D+A  LF +M+   + PN     
Sbjct: 195 KLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQ 254

Query: 171 -----VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                ++TF  LI    +  +  +  +LL  M E  ++PD
Sbjct: 255 GLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 294



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 18/231 (7%)

Query: 6   YCKNKEIEG--ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
           +CK   +    AL+ +  M+     P +   N L  GL +I    + F L+++M+  G++
Sbjct: 42  HCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLS 101

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D  T  I ++ LC    + E    F  +       +I  Y+ LI GLC   R+  A  L
Sbjct: 102 SDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRL 161

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM------EENAVAPNVITFGTL 177
           F  + +     DVVTY  +I GL   G ++ A  L  +M       E    PNVIT+  +
Sbjct: 162 FLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNII 221

Query: 178 IHGFIRINEPSKVIELLHKMK----------EKNVMPDASIVSIVVDLLAK 218
           + G  ++    +  +L  +MK          ++ + PD    ++++D L K
Sbjct: 222 VDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCK 272


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/220 (45%), Positives = 141/220 (64%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK  ++E A+ L++EML  G+ PDV     L   LF   +V+ A +LF  ++  
Sbjct: 347 MLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPY 406

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D     IF+DGLCKNGYI E+++LF  L     +LDI+ + CLIDGLCK+G+LE A
Sbjct: 407 AMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETA 466

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    +  D + YS MIHG    GQ+DKA+ LF  MEEN  +P++IT+  L+ G
Sbjct: 467 WELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRG 526

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F   N+  KV++LLH+M EK+V PD  I +IV D++ K+E
Sbjct: 527 FYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDE 566



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C    I   L   + ++ +G  PDVV   TL  GL   H++  A KLF  MQ+ 
Sbjct: 131 ILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKL 190

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------RILKCELDIQAYSCLIDGLCKS 114
           G   +  TY   I GLC  G I  +++  + +       +  C  ++ +YS +IDGLCK 
Sbjct: 191 GCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKV 250

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G  E A+ LF+ +    +  +VVT+S++I  L  +GQ+ KA  L   M +  + PN+ T+
Sbjct: 251 GNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTY 310

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +LI GF  + + +   EL   M  K   PD    +++++   K 
Sbjct: 311 TSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKT 355



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK------GIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           LI G C    I  AL  + EML+         +P+V+ ++ +  GL ++   E A  LF+
Sbjct: 202 LIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFN 261

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   GV  +  T+++ ID LCK G ++++ +L   +  +    ++  Y+ LI G C  G
Sbjct: 262 EMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVG 321

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            L  A ELF S+P      DV++Y+++I+G     ++++A  LF +M    + P+V T G
Sbjct: 322 DLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSG 381

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            L+       +     EL   +K   +  D  I  I +D L KN
Sbjct: 382 VLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKN 425



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK    E A+ L++EM+ +G++P+VV  + L   L +  QV +A KL + M + 
Sbjct: 242 IIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQI 301

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYT  I G C  G +  + ELF ++     E D+ +Y+ LI+G CK+ ++E A
Sbjct: 302 GIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEA 361

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI-------- 172
           ++LF+ +    +  DV T  +++  L+  G++D A +LF  ++  A+  ++         
Sbjct: 362 MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 421

Query: 173 ---------------------------TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                                      TFG LI G  +  +     EL  K+ E+ + PD
Sbjct: 422 LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 481

Query: 206 ASIVSIVVDLLAK 218
           A   S ++    K
Sbjct: 482 AMAYSSMIHGFCK 494



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 6/210 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K +      +LY +M   G+ PD++  N L   L  ++++         + R G
Sbjct: 97  LLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRG 156

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I GLC    I+E+ +LF  ++ L C  ++  Y  LI GLC  G + IAL
Sbjct: 157 YIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIAL 216

Query: 122 ELFHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +    +             +V++YSI+I GL   G  ++A  LF +M +  V PNV+TF 
Sbjct: 217 KWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFS 276

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            LI    +  +  K  +LL  M +  ++P+
Sbjct: 277 VLIDMLCKEGQVIKAKKLLEMMIQIGIVPN 306



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           V +A + FD M R        ++   + GL K  +  +   L++ + +     D+   + 
Sbjct: 77  VTQAHQFFDLMMRS-----IFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNI 131

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI+ LC   R+   L     + R   + DVVT++ +I GL  + ++ +A  LF+ M++  
Sbjct: 132 LINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLG 191

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAK 218
             PNV+T+GTLI G   +   +  ++   +M         N  P+    SI++D L K
Sbjct: 192 CTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCK 249



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 50/95 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK  +++ A  L+ +M   G  PD++ ++ L  G +E +++E+  +L   M    
Sbjct: 488 MIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKD 547

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
           V  D   Y I  D +CK+    E ++L +   + K
Sbjct: 548 VWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQK 582


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 137/209 (65%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK  ++E A+ LY+ ML  G +PDV  +  L  GLF+  +V  A KLF  M+  
Sbjct: 379 VLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVY 438

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y IF++GLCKNG + E++ELF  L+    +LDI+ ++CLIDGLCK+G+LE A
Sbjct: 439 GIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETA 498

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  LP+  L  DVVTY+IMIH     GQ+ KA+ LF  ME+N   P+ IT+ TLI G
Sbjct: 499 WELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRG 558

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV 209
           F    +  KV+ELLH M +++V  D +I+
Sbjct: 559 FFESKKLEKVVELLHMMVQRDVSLDVNIL 587



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK++  + A +L+ EM  +G+ P V+ + +L          E A +LF+EM   
Sbjct: 247 IIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEMVNQ 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T+ + ID LCK G ++E+ +L   +       ++  Y+ LI+G C  G L  A
Sbjct: 299 GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 358

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF S+P      DV+ Y+++I+G     ++++A  L+  M +    P+V T+G L+ G
Sbjct: 359 RELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 418

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +     +L   MK   +  D  I  I ++ L KN
Sbjct: 419 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKN 457



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 112/206 (54%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E A  L++EM+++G++P+VV  N L   L +  +V  A  L + M + G+  +  TY   
Sbjct: 286 EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 345

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+G C  G +  + ELF ++    CE D+  Y+ LI+G CK+ ++E A++L++ + +   
Sbjct: 346 IEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 405

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             DV TY  ++ GL+  G++  A  LF  M+   +  ++  +G  ++G  +     + +E
Sbjct: 406 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAME 465

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           L +K+K  N+  D    + ++D L K
Sbjct: 466 LFNKLKSYNIKLDIECFNCLIDGLCK 491



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 14/223 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K K       LY++M   GI PD    N L   L  +++V     +   + R G
Sbjct: 102 LLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRG 161

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  I GLC    I ++  LF  ++ L C  +   Y  L+ GLC++G + IAL
Sbjct: 162 YIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIAL 221

Query: 122 ELFHSLPR-----GVLVADVV-TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +L   +       G+    VV +YSI+I  L  D + D+A DLF +M+   + P VI++ 
Sbjct: 222 KLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYT 281

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +L+       E +K   L ++M  + V P+    ++++D+L K
Sbjct: 282 SLMW------EEAK--RLFNEMVNQGVQPNVVTFNVLIDVLCK 316



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 33/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  C    +   L + + +L +G  PD+V + TL  GL   H++ +A  LF  MQ+ 
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFR------TLRILKCELDIQAYSCLIDGLCKS 114
           G   +  TY   + GLC+ G I  +++L +      +L  +  +  + +YS +ID LCK 
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255

Query: 115 GR---------------------------LEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
            R                            E A  LF+ +    +  +VVT++++I  L 
Sbjct: 256 RREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLC 315

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
            +G++ +A DL   M +  + PN++T+ +LI GF  + + +   EL   M  K   PD  
Sbjct: 316 KEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVI 375

Query: 208 IVSIVVDLLAKNE 220
             +++++   K  
Sbjct: 376 CYTVLINGYCKTS 388



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 6/178 (3%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           +AF+ F  M          ++T  + GL K  +  +   L+  +R+     D    + L+
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + LC   R+   L +   + R   + D+VTY+ +I GL  + ++ KA  LF  M++    
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAKNE 220
           PN IT+GTL+ G  R    S  ++L  +M         N  P     SI++D L K+ 
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDR 256



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 77  CKNGYI--VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           CK G I  +++ + F  +        + +++ L+ GL K         L++ +    +  
Sbjct: 70  CKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D  T +I+++ L N  ++ +   +   +      P+++T+ TLI G    +  SK   L 
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 195 HKMKEKNVMPDA 206
            +M++    P+A
Sbjct: 190 TRMQKLGCTPNA 201


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 137/209 (65%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK  ++E A+ LY+ ML  G +PDV  +  L  GLF+  +V  A KLF  M+  
Sbjct: 387 VLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVY 446

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y IF++GLCKNG + E++ELF  L+    +LDI+ ++CLIDGLCK+G+LE A
Sbjct: 447 GIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETA 506

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  LP+  L  DVVTY+IMIH     GQ+ KA+ LF  ME+N   P+ IT+ TLI G
Sbjct: 507 WELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRG 566

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV 209
           F    +  KV+ELLH M +++V  D +I+
Sbjct: 567 FFESKKLEKVVELLHMMVQRDVSLDVNIL 595



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K K       LY++M   GI PD    N L   L  +++V     +   + R G
Sbjct: 102 LLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRG 161

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  I GLC    I ++  LF  ++ L C  +   Y  L+ GLC++G + IAL
Sbjct: 162 YIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIAL 221

Query: 122 ELFHSLPR-----GVLVADVV-TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +L   +       G+    VV +YSI+I  L  D + D+A DLF +M+   + P VI++ 
Sbjct: 222 KLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYT 281

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LIHGF    +  +   L ++M  + V P+    ++++D+L K
Sbjct: 282 SLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCK 324



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   + E A  L++EM+++G++P+VV  N L   L +  +V  A  L + M + G
Sbjct: 283 LIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRG 342

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I+G C  G +  + ELF ++    CE D+  Y+ LI+G CK+ ++E A+
Sbjct: 343 IVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAM 402

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ + +     DV TY  ++ GL+  G++  A  LF  M+   +  ++  +G  ++G 
Sbjct: 403 KLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGL 462

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + +EL +K+K  N+  D    + ++D L K
Sbjct: 463 CKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCK 499



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK++  + A +L+ EM  +G+ P V+ + +L  G     + E A +LF+EM   
Sbjct: 247 IIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQ 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T+ + ID LCK G ++E+ +L   +       ++  Y+ LI+G C  G L  A
Sbjct: 307 GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 366

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF S+P      DV+ Y+++I+G     ++++A  L+  M +    P+V T+G L+ G
Sbjct: 367 RELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 426

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +     +L   MK   +  D  I  I ++ L KN
Sbjct: 427 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKN 465



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  C    +   L + + +L +G  PD+V + TL  GL   H++ +A  LF  MQ+ 
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFR------TLRILKCELDIQAYSCLIDGLCKS 114
           G   +  TY   + GLC+ G I  +++L +      +L  +  +  + +YS +ID LCK 
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            R + A +LF  +    +   V++Y+ +IHG    G+ ++A  LF +M    V PNV+TF
Sbjct: 256 RREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTF 315

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             LI    +  +  +  +LL  M ++ ++P+
Sbjct: 316 NVLIDVLCKEGKVIEAKDLLEVMIQRGIVPN 346



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C    I  A  L++ M   G  P+ + + TL  GL     +  A KL  EM  D 
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231

Query: 62  VAADTR------TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                       +Y+I ID LCK+    E+ +LF  +++      + +Y+ LI G C  G
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGG 291

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           + E A  LF+ +    +  +VVT++++I  L  +G++ +A DL   M +  + PN++T+ 
Sbjct: 292 KWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 351

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +LI GF  + + +   EL   M  K   PD    +++++   K  
Sbjct: 352 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTS 396



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 6/210 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG------IKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+ G C+   I  AL L+ EML+         KP V+ ++ +   L +  + + A  LF+
Sbjct: 207 LMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFE 266

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+     +YT  I G C  G   E+  LF  +     + ++  ++ LID LCK G
Sbjct: 267 EMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEG 326

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A +L   + +  +V +++TY+ +I G    G ++ A +LF+ M      P+VI + 
Sbjct: 327 KVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYT 386

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            LI+G+ + ++  + ++L + M +    PD
Sbjct: 387 VLINGYCKTSKVEEAMKLYNGMLQVGKRPD 416



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 6/178 (3%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           +AF+ F  M          ++T  + GL K  +  +   L+  +R+     D    + L+
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + LC   R+   L +   + R   + D+VTY+ +I GL  + ++ KA  LF  M++    
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAKNE 220
           PN IT+GTL+ G  R    S  ++L  +M         N  P     SI++D L K+ 
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDR 256


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 154/239 (64%), Gaps = 16/239 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  YCK+ E+ GA+ LY EM+ +GI+P V+ ++          +V  A KLF E+Q  
Sbjct: 398 ILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS----------KVGDARKLFGEIQFQ 447

Query: 61  GVAADTRTYTIF---IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            +  D+ +Y+I+   +DGLCKNG + E++++F  L   K   ++  ++ LI+G+C+S +L
Sbjct: 448 DMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKL 507

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           EIA ELF+ L    L  DVVTY+IMI+GL   GQ  KA+DLFL+MEE   APNV+TF TL
Sbjct: 508 EIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTL 567

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHE 233
           + G    +E  K++ELLHKM  + + PDAS + IV+D+L K+E     LN LP+F V E
Sbjct: 568 MRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHECLNLLPTFPVQE 626



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L     K K+    +++   M S G+  + +  N L   L  + +V   F +F  + R G
Sbjct: 113 LFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKG 172

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +TRT+T  + GLC  G I E+V +F+ + +  C         LI GLC++G    AL
Sbjct: 173 YRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNAL 232

Query: 122 ELFHSLPRG------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +L  ++  G           VV+YS +I  L  DG +++A + F++M+E  + PNV+T+ 
Sbjct: 233 KLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYT 292

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +L+HG    +E  +   L  +M +  ++PD    S+++  L K
Sbjct: 293 SLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCK 335



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  C  K +     ++  +L KG +P+      L  GL    ++  A ++F  M   
Sbjct: 147 ILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVF 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------RILKCELDIQAYSCLIDGLCKS 114
                  T  + I GLC+ G    +++L   +        + C+  + +YSC+ID LCK 
Sbjct: 207 DCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKD 266

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G +E A E F  +    +  +VVTY+ ++HGL +  + ++A  LF++M ++ + P+V+TF
Sbjct: 267 GLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTF 326

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             LI    ++ +  +   L   M ++ V P     +I+++
Sbjct: 327 SVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIE 366



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 13/221 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+  +E A   + EM  KGI P+VV + +L  GL    + E A +LF EM   G
Sbjct: 259 IIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHG 318

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+++ I  LCK G + E+  LF  +     E   + Y+ LI+G C +G ++   
Sbjct: 319 LLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGK 378

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+       D  +YSI++     D ++  A  L+ +M +  + P VIT+       
Sbjct: 379 KIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS------ 432

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA---SIVSIVVDLLAKN 219
            ++ +  K   L  +++ ++++ D+   SI ++ +D L KN
Sbjct: 433 -KVGDARK---LFGEIQFQDMVLDSISYSIYNVYLDGLCKN 469



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 6/225 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   +I  A+ ++  M     +P  +    L  GL        A KL + M    
Sbjct: 183 LVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGN 242

Query: 62  ------VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                       +Y+  ID LCK+G +  + E F  ++      ++  Y+ L+ GLC + 
Sbjct: 243 SDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSAS 302

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
             E A  LF  +    L+ DVVT+S++I  L   G++ +A  LF  M +  V P+  T+ 
Sbjct: 303 EWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYN 362

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LI G+       +  ++   M  K    DA   SI++    K+ 
Sbjct: 363 ILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDS 407


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/220 (45%), Positives = 145/220 (65%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI GYCK   +E A+ LY+EML  G  PD+     L  GLF   +V  A KLF  ++  
Sbjct: 347 VLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPH 406

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +    ++F+DGLCKNG + E++ELF  L+    +LDI++++CLIDGLCK+ +LE A
Sbjct: 407 AVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETA 466

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L +  L  DVVTY IMI+G   +GQ+D A+ LF  MEEN   PN++T+  L+HG
Sbjct: 467 WELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHG 526

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F + N+  +V++LLHKM +K+V   ASI +IV D+++K+E
Sbjct: 527 FYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDE 566



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK------GIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           LI G C+   I  AL L+ EML+         KP++  +N +   L +I + + A +LF+
Sbjct: 202 LIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFN 261

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   GV  D  T++  ID LCK G ++E+ +   T+ +     D+  ++ LI+G C  G
Sbjct: 262 EMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVG 321

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            L+ A ELF S+P      DV++Y+++I+G      +++A  L+ +M      P++ TF 
Sbjct: 322 DLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFC 381

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            L+ G     +     +L   +K   V  +  I S+ +D L KN
Sbjct: 382 VLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKN 425



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK  + + A  L++EM+ +G++PDVV  + L   L +   V  A K  + M   
Sbjct: 242 IIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLR 301

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+T  I+G C  G +  + ELF ++     E D+ +Y+ LI G CK+  +E A
Sbjct: 302 GIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEA 361

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L++ + R     D+ T+ +++ GL+  G++  A  LF  ++ +AV  N+      + G
Sbjct: 362 MKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDG 421

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + +EL +++K  N+  D    + ++D L K
Sbjct: 422 LCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCK 459



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 14/241 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+    K K      +LY +M   G+ P+    N L   L  +++V         + R 
Sbjct: 96  LLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRR 155

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  I GLC    I E+  LF  ++ L C  ++  Y  LI GLC++G + +A
Sbjct: 156 GYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLA 215

Query: 121 LELFHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           L+L   +  G          ++ +Y+I+I  L   G+  +A  LF +M +  V P+V+TF
Sbjct: 216 LKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTF 275

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPD----ASIV---SIVVDLLAKNEISLNSLP 227
             LI    +     +  + L  M  + ++PD     S++    +V DL +  E+ L S+P
Sbjct: 276 SALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFL-SMP 334

Query: 228 S 228
           S
Sbjct: 335 S 335



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           +A + FD M R  +     ++ + +  L K  +  +   L++ + +     +    + LI
Sbjct: 79  QALQFFDLMMRSII-----SFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILI 133

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + LC   R+   L     + R   + DVVTY+ +I GL  + ++ +A  LF+ M++    
Sbjct: 134 NCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCW 193

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAK 218
           PNV+T+GTLI G  R    +  ++L  +M         N  P+    +I++D L K
Sbjct: 194 PNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCK 249



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK +++E A  L+ ++  +G++PDVV +  +  G  +  QV+ A  LF  M+ +G
Sbjct: 453 LIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENG 512

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  + G  KN  + E V+L   +      L    Y+ + D + K  +    L
Sbjct: 513 CTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCREWL 572

Query: 122 ELFHSLP 128
           ++    P
Sbjct: 573 DILQRFP 579



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CKN +++ A  L+  M   G  P+++ ++ L  G ++ +++E   KL  +M + 
Sbjct: 487 IMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQK 546

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
            V+     YTI  D + K+    E +++ +   + K
Sbjct: 547 DVSLAASIYTIVEDMVSKDEKCREWLDILQRFPVQK 582


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 3/200 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK  ++E A+NLY+EM   G +P+V  ++TL  GL +  +V  A KLF  M+  
Sbjct: 276 ILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKAS 335

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D+  Y IF+DGLCKNG + E++ELF  L+    +LD ++YS LIDGLCK+G++EIA
Sbjct: 336 GISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIA 395

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF---LDMEENAVAPNVITFGTL 177
            E F  L +  L  +VVT +IMIHG     Q+DKA+ LF     MEEN   P++IT+ TL
Sbjct: 396 WEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTL 455

Query: 178 IHGFIRINEPSKVIELLHKM 197
           + GF   N+  +V+ LLHKM
Sbjct: 456 LRGFCESNKLEEVVNLLHKM 475



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 1   ILINGYCKNKEI---EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LI+  CK  +I     A  L+  M SKG + + + +  L  G  +I +VE A  L++EM
Sbjct: 238 VLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEM 297

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            + G   + +TY+  + GL + G + ++ +LF  ++     +D   Y   +DGLCK+G L
Sbjct: 298 PQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVL 357

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A+ELF+ L       D  +YS +I GL   G+++ A + F  + +  + PNV+T   +
Sbjct: 358 FEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIM 417

Query: 178 IHGFIRINEPSK---VIELLHKMKEKNVMPD 205
           IHGF R+ +  K   + E + KM+E    PD
Sbjct: 418 IHGFCRVEQVDKANILFEKMEKMEENGCTPD 448



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV---ERAFKLFDEM 57
           IL N  C    +   L   + +L +G  PD+V +NTL  GL+ + +V   + A ++F+EM
Sbjct: 130 ILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEM 189

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR- 116
           +  G+  +  +Y+  + G C  G + ES  LF  +     + ++  ++ LID LCK G+ 
Sbjct: 190 KAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKI 249

Query: 117 --LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
             L  A +LF S+P      + ++Y+I+I+G     ++++A +L+ +M +    PNV T+
Sbjct: 250 GDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTY 309

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
            TL+ G ++  +     +L   MK   +  D+ I  I +D L KN +   ++  F 
Sbjct: 310 STLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFN 365



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 115/217 (52%), Gaps = 3/217 (1%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           G CK    + A  ++ EM ++G+ P+V+ +++L  G     ++E + +LF+EM   GV  
Sbjct: 172 GLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQP 231

Query: 65  DTRTYTIFIDGLCKNGYI---VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   + + ID LCK G I     + +LF ++    CE +  +Y+ LI+G CK  ++E A+
Sbjct: 232 NLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAM 291

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ +P+     +V TYS ++ GL   G++  A+ LF  M+ + ++ +   +   + G 
Sbjct: 292 NLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGL 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + +EL +++K  N   D    S ++D L K
Sbjct: 352 CKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCK 388



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 3/175 (1%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           V +AF  FD M R        ++   + GL K  +  +   L+  +R+     D+   + 
Sbjct: 71  VIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNI 130

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN---DGQMDKAHDLFLDME 163
           L + LC   R+   L     + R   + D+VTY+ +I GLY     G  D+A ++F +M+
Sbjct: 131 LANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMK 190

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + PNVI++ +L+HGF    +  +   L ++M ++ V P+    ++++D+L K
Sbjct: 191 AQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCK 245



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 5/177 (2%)

Query: 7   CKNKEIE--GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           CK   I+   A + +  M+     P +   N L  GL +I+   + F L+++M+  G++ 
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL---CKSGRLEIAL 121
           D  T  I  + LC    + E +     +       DI  Y+ LI GL   CK G  + A 
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK 183

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           E+F  +    ++ +V++YS ++HG    G+++++  LF +M +  V PN++ F  LI
Sbjct: 184 EIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLI 240


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 3/200 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK  ++E A+NLY+EM   G +P+V  ++TL  GL +  +V  A KLF  M+  
Sbjct: 207 ILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKAS 266

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D+  Y IF+DGLCKNG + E++ELF  L+    +LD ++YS LIDGLCK+G++EIA
Sbjct: 267 GISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIA 326

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF---LDMEENAVAPNVITFGTL 177
            E F  L +  L  +VVT +IMIHG     Q+DKA+ LF     MEEN   P++IT+ TL
Sbjct: 327 WEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTL 386

Query: 178 IHGFIRINEPSKVIELLHKM 197
           + GF   N+  +V+ LLHKM
Sbjct: 387 LRGFCESNKLEEVVNLLHKM 406



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 113/207 (54%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++  A  L+  M SKG + + + +  L  G  +I +VE A  L++EM + G
Sbjct: 173 LIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVG 232

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +TY+  + GL + G + ++ +LF  ++     +D   Y   +DGLCK+G L  A+
Sbjct: 233 KRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAM 292

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ L       D  +YS +I GL   G+++ A + F  + +  + PNV+T   +IHGF
Sbjct: 293 ELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGF 352

Query: 182 IRINEPSK---VIELLHKMKEKNVMPD 205
            R+ +  K   + E + KM+E    PD
Sbjct: 353 CRVEQVDKANILFEKMEKMEENGCTPD 379



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 124/229 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK    + A  ++ EM ++G+ P+V+ +++L  G     ++E + +LF+EM   
Sbjct: 67  IIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ 126

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   + + ID LCK G ++E+ +L          LD+  Y+ LIDG CK G L  A
Sbjct: 127 GVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSA 186

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF S+P      + ++Y+I+I+G     ++++A +L+ +M +    PNV T+ TL+ G
Sbjct: 187 RKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG 246

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            ++  +     +L   MK   +  D+ I  I +D L KN +   ++  F
Sbjct: 247 LLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELF 295



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C   ++E +  L++EM+ +G++P++V  N L   L +  +V  A KL +   + G
Sbjct: 103 LVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRG 162

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   IDG CK G +  + +LF ++    CE +  +Y+ LI+G CK  ++E A+
Sbjct: 163 IILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAM 222

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ +P+     +V TYS ++ GL   G++  A+ LF  M+ + ++ +   +   + G 
Sbjct: 223 NLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGL 282

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + +EL +++K  N   D    S ++D L K
Sbjct: 283 CKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCK 319



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G+ PD+   N L   L  +++V         + R G   D  TY   I GLC        
Sbjct: 5   GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLC-------- 56

Query: 86  VELFRTLRILKCELDIQAYSC-LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
               R  R       I   +C +IDGLCK G  + A E+F  +    ++ +V++YS ++H
Sbjct: 57  ----RVHR-------ISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVH 105

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G    G+++++  LF +M +  V PN++ F  LI    +  +  +  +LL    ++ ++ 
Sbjct: 106 GFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIIL 165

Query: 205 DASIVSIVVDLLAK 218
           D    + ++D   K
Sbjct: 166 DLVTYNSLIDGFCK 179



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 18/162 (11%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   G++ D  T  I  + LC    + E +     +       DI  Y+ LI GLC+  R
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + +A                    I+I GL   G  D+A ++F +M+   + PNVI++ +
Sbjct: 61  ISVAT------------------CIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSS 102

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L+HGF    +  +   L ++M ++ V P+    ++++D+L K
Sbjct: 103 LVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCK 144


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 145/231 (62%), Gaps = 3/231 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK+++I+ A  L+ EM  KG+KP  V +NTL   L +  +V  A KLF EMQ  
Sbjct: 326 ILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC 385

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY + +DGLCKNG++ E+++LF++++  + + +I+ +S L+DG+C++G+LE A
Sbjct: 386 GQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEA 445

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  + +  L  D + Y+I+I+GL N G + +A  L   MEE    P+ ITF  +I  
Sbjct: 446 WKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQN 505

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLNSLPS 228
            ++ NE  + I+LL +M+ +N  PD ++ S+++ L +   +   +L SLP+
Sbjct: 506 LLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPN 556



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C   ++E A  L+  +  +GIK +V  +N L  G  +  +++ AF+LF+EM+  G
Sbjct: 292 LMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKG 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T TY   I  LC++G +  + +LF  ++     L +  Y  L+DGLCK+G LE A+
Sbjct: 352 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAI 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ +     ++  +SI++ G+   G++++A   F ++ +N + P+ I +  LI+G 
Sbjct: 412 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEI 221
                 S+ ++LL +M+EK  +PD+   ++++ +LL +NEI
Sbjct: 472 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 512



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 1/196 (0%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           L +G +PD V   TL  G++  + +  A +LFDEM   G+  D +TY I I+GLCK    
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
             +++L   ++   C+ D+  Y  +ID LCK G    AL++F  +    ++ DVV YS +
Sbjct: 129 GLAIKLHEKMKG-NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 187

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           + GL   G++ +A + F +ME   ++ +V T+ +LIHG  R     +V   L+ M ++  
Sbjct: 188 MDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 247

Query: 203 MPDASIVSIVVDLLAK 218
            PDA   +I++D L K
Sbjct: 248 SPDAFTFTILIDGLCK 263



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK+     AL+++SEM+  GI PDVV++++L  GL    +++ A + F EM+  
Sbjct: 151 MIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGR 210

Query: 61  GVAADTRTY-----------------------------------TIFIDGLCKNGYIVES 85
           G++AD  TY                                   TI IDGLCK G + E+
Sbjct: 211 GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEA 270

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ++   +     E DI  Y+ L++GLC  G+LE A +LF SL    +  +V +Y+I+I+G
Sbjct: 271 QQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILING 330

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              D ++D+A  LF +M    + P+ +T+ TLI    +        +L  +M+       
Sbjct: 331 YCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK 390

Query: 206 ASIVSIVVDLLAKN 219
            S   +++D L KN
Sbjct: 391 LSTYCVLLDGLCKN 404



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L RG    D VT + ++ G++ +  +  A  LF +M E  +  +  T+G LI+G  +  +
Sbjct: 69  LKRG-FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARK 127

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
               I+L  KMK  N   D     +++D L K+ ++  +L  F+
Sbjct: 128 TGLAIKLHEKMK-GNCKGDVFTYGMIIDSLCKDGMTTEALDMFS 170


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 144/231 (62%), Gaps = 3/231 (1%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILINGYCK+++I+ A   + EM  KG+KP  V +NTL   L +  +V  A KLF EMQ  
Sbjct: 1265 ILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC 1324

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G      TY + +DGLCKNG++ E+++LF++++  + + +I+ +S L+DG+C++G+LE A
Sbjct: 1325 GQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEA 1384

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             + F  + +  L  D + Y+I+I+GL N G + +A  L   MEE    P+ ITF  +I  
Sbjct: 1385 WKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQN 1444

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLNSLPS 228
             ++ NE  + I+LL +M+ +N  PD ++ S+++ L +   +   +L SLP+
Sbjct: 1445 LLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPN 1495



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 129/221 (58%), Gaps = 1/221 (0%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L+NG C   ++E A  L+  +  +GIK +V  +N L  G  +  +++ AF+ F+EM+  G
Sbjct: 1231 LMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKG 1290

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +   T TY   I  LC++G +  + +LF  ++     L +  Y  L+DGLCK+G LE A+
Sbjct: 1291 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAM 1350

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +LF S+ +     ++  +SI++ G+   G++++A   F ++ +N + P+ I +  LI+G 
Sbjct: 1351 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 1410

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEI 221
                  S+ ++LL +M+EK  +PD+   ++++ +LL +NEI
Sbjct: 1411 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 1451



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 1/218 (0%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI+  C  + +     ++   L +G +PD V   TL  G++  + +  A +LFDEM + 
Sbjct: 986  ILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKK 1045

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  D +TY I I+GLCK      +++L   ++   C+ D+  Y  +ID LCK G    A
Sbjct: 1046 GLLGDAKTYGILINGLCKARKTGLAIKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEA 1104

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L++F  +    ++ DVV YS ++ GL   G++ +A + F +ME   ++ +V T+ +LIHG
Sbjct: 1105 LDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHG 1164

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              R     +V   L+ M ++   PDA   +I++D L K
Sbjct: 1165 LSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCK 1202



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 35/254 (13%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++I+  CK+     AL+++SEM+  GI PDVV++++L  GL    +++ A + F EM+  
Sbjct: 1090 MIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGR 1149

Query: 61   GVAADTRTY-----------------------------------TIFIDGLCKNGYIVES 85
            G++AD  TY                                   TI IDGLCK G + E+
Sbjct: 1150 GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEA 1209

Query: 86   VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             ++   +R    E DI  Y+ L++GLC  G+LE A +LF SL    +  +V +Y+I+I+G
Sbjct: 1210 QQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILING 1269

Query: 146  LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               D ++D+A   F +M    + P+ +T+ TLI    +        +L  +M+       
Sbjct: 1270 YCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK 1329

Query: 206  ASIVSIVVDLLAKN 219
             S   +++D L KN
Sbjct: 1330 LSTYCVLLDGLCKN 1343



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 3/190 (1%)

Query: 42   FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI 101
            F I ++  A KLFD          T T+   +  + K GY      ++R +  +  + D+
Sbjct: 922  FGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDL 981

Query: 102  QAYSCLIDGLCK-SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
               + LI   C               L RG    D VT + ++ G++ +  +  A  LF 
Sbjct: 982  YTLNILIHCCCSLRAVGCGFGVFGGFLKRG-FEPDAVTVTTLVKGVWMENGIPDAVQLFD 1040

Query: 161  DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +M +  +  +  T+G LI+G  +  +    I+L  KMK  N   D     +++D L K+ 
Sbjct: 1041 EMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMK-GNCKGDVFTYGMIIDALCKDG 1099

Query: 221  ISLNSLPSFT 230
            ++  +L  F+
Sbjct: 1100 MTTEALDMFS 1109


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/232 (37%), Positives = 148/232 (63%), Gaps = 1/232 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC + + E A+ L+ +M  + + P +  +  L   L++  ++  A +LF+ MQ  G
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TYT+ +DGLCKNG I E++++FR+L+ +K +  I+ YS LI G+ ++ R E A+
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAM 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +P   LV ++VTY+IMI+GL  +G++ +A  LF+ MEE+    + I+F  +I GF
Sbjct: 380 EIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGF 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
           ++ N+  K +E L +M+EKN  P+ S+  ++V+L A +  S + LP+  +HE
Sbjct: 440 LQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQS-SELPNNFLHE 490



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C+    + A   +S+M+ +GI PDVV   TL   L +  +V+ A+K+F+ M + G
Sbjct: 155 LIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TY   ++GLC +  +  +V LF  +     ++D+ +Y+ LI+G C SG+ E A+
Sbjct: 215 EAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAM 274

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L   + TY+I++  LY +G++  A +LF +M+    +P++ T+  L+ G 
Sbjct: 275 TLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGL 334

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     + I++   +K     P   I SI++
Sbjct: 335 CKNGCIEEAIDVFRSLKSIKYKPSIRIYSILI 366



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 118/219 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK+      L ++ EM++ GI P+V+++++L  GL  + ++  A  LFDEM   
Sbjct: 84  LVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQ 143

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+  TY   I   C+ G   E+   F  +       D+  ++ LID L K G+++ A
Sbjct: 144 GIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEA 203

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  + +     ++VTY+ +++GL    QMD A  LF  M E  +  +VI++ TLI+G
Sbjct: 204 YKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLING 263

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +    +  + + L  KM+ + + P  +  +I++  L +N
Sbjct: 264 YCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQN 302



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  ++  A+NL+ EM+S+GIK +V+ +N+L          + A + F +M  +G
Sbjct: 120 LINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG 179

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  ID L K G + E+ ++F  +       +I  Y+ L++GLC   +++ A+
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAV 239

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF  +  RG+ + DV++Y+ +I+G    G+ ++A  LF  M+   + P++ T+  L+  
Sbjct: 240 RLFEVMVERGIKI-DVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKA 298

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +        EL + M+     P     ++++D L KN
Sbjct: 299 LYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKN 337



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 3/201 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   ++  AL L+ +M   G + D++++  L   L +  Q  RA +L   M  + 
Sbjct: 15  LVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEI 74

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY + ID LCK+G  ++ +++FR +  +    ++  YS LI+GLC+ G+L  A+
Sbjct: 75  CSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAV 134

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    + A+V+TY+ +IH     G   +A   F  M    + P+V+TF TLI   
Sbjct: 135 NLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHL 194

Query: 182 I---RINEPSKVIELLHKMKE 199
               ++ E  K+ EL+ K  E
Sbjct: 195 SKKGKVQEAYKIFELMIKQGE 215



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 97/196 (49%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           +  G +P++V  +TL  G+    +V  A +LFD+M R G   D   Y   I+ L K    
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
             +VEL R +    C  +   Y  +ID LCK G     L++F  +    +  +V+ YS +
Sbjct: 61  RRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSL 120

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I+GL   G++ +A +LF +M    +  NVIT+ +LIH   R     +      +M  + +
Sbjct: 121 INGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGI 180

Query: 203 MPDASIVSIVVDLLAK 218
           +PD    + ++D L+K
Sbjct: 181 LPDVVTFTTLIDHLSK 196



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CKN  IE A++++  + S   KP + I++ L  G+F+  + E A ++FDE+   
Sbjct: 329 VLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTV 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY I I+GLCK G ++E+  LF  +    CE D  +++ +I G  +  +++ A
Sbjct: 389 GLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKA 448

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLY-NDGQMDKAHDLFL 160
           +E    +  +     D VT  +M+  LY  D Q  +  + FL
Sbjct: 449 MEFLKRMREKNFSPNDSVT--LMLVNLYAADAQSSELPNNFL 488



 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 49/95 (51%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           ++VT S ++ G+  +G++  A +LF  M  +    +++ +G LI+   +  +  + +EL 
Sbjct: 8   NLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELH 67

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +M  +    +     +V+D L K+ +++  L  F
Sbjct: 68  RRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMF 102


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 135/224 (60%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK  +I+ A+ L+ EM  K   PD   +NTL  GL  + +++ A  LF EM   G
Sbjct: 342 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARG 401

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I +D LCKN ++ E++ L + +       DIQ Y+ +IDG+C++G LE A 
Sbjct: 402 QMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAAR 461

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L   V TY+IMIHGL   G +++A+ LF++M+ N  +P+  T+ T+  GF
Sbjct: 462 DLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGF 521

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           ++ NE  + I+LL +M  +    D S  +++V++L+ + +  +S
Sbjct: 522 LQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGLDQSS 565



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+S+M+ +GI PD+  + +L   L  + + +    L ++M    
Sbjct: 202 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  +D LCK G + E+ E+   +     E D+  Y+ L+DG C    ++ A+
Sbjct: 262 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + R     DV++Y+ +I+G     ++DKA  LF +M      P+  T+ TL+HG 
Sbjct: 322 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGL 381

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +      I L H+M  +  MPD    SI++D L KN
Sbjct: 382 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 419



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L ++M S G+ P+V   N L      +++V  AF +  ++ + G
Sbjct: 62  LLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLG 121

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I GLC  G I E++ LF  +     + ++  Y  LI+GLCK G    A+
Sbjct: 122 HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 181

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +G    DVV Y+ +I  L  D Q+ +A +LF  M    ++P++ T+ +L+H  
Sbjct: 182 RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 241

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M    ++PD  I S VVD L K
Sbjct: 242 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK 278



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++ +++L  G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ D+  Y+ +ID LCK  ++  A
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ ++H L N  +      L   M  + + P+V+ F T++  
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 275

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  + ++  E++  M ++ V PD    + ++D
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMD 309



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 132 LIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN 191

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  ID LCK+  + E+  LF  +       DI  Y+ L+  LC     +   
Sbjct: 192 CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT 251

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ DVV +S ++  L  +G++ +AH++   M +  V P+V+T+ TL+ G 
Sbjct: 252 TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGH 311

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              +E  + +++   M  K   PD
Sbjct: 312 CLQSEMDEAVKVFDMMVRKGFAPD 335



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN  +E A+ L   + +  + PD+ ++N +  G+    ++E A  LF  +   
Sbjct: 411 ILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSK 470

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY I I GLCK G + E+ +LF  +    C  D   Y+ +  G  ++     A
Sbjct: 471 GLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRA 530

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      ADV T ++++  L +DG
Sbjct: 531 IQLLEEMLARGFSADVSTTTLLVEMLSDDG 560



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI+  C   R+  A  +   + +     D  T++ +I GL  +G++ +A  LF  M +  
Sbjct: 97  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 156

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             PNV+T+GTLI+G  ++   S  I LL  M++ N  PD  I + ++D L K+ 
Sbjct: 157 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDR 210


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 137/221 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK + ++ A +L  EM  K + PD V ++TL  GL ++ + + A  LF EM   
Sbjct: 377 ILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSS 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+  +DGLCK+G++ E+++L ++++  K E DI  Y+ LI+G+  +G+LE+A
Sbjct: 437 GLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVA 496

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    +   + TY+IMI GL  +G  D+A++LF  ME++   PN  ++  +I G
Sbjct: 497 KELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQG 556

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F++  + S  I L+ +M  K    D+S   +++DL +++EI
Sbjct: 557 FLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDLESRDEI 597



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 120/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+  +  A++L SEM+ +GI PDVV ++T+  G   +  +  A  LF+EM    
Sbjct: 238 IIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRN 297

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +T T+TI +DGLCK G + E+  +F  +     E +   Y+ L+DG C + +++ A 
Sbjct: 298 VMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQ 357

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +        V +Y+I+I+G     ++D+A  L ++M E  + P+ +T+ TL+ G 
Sbjct: 358 KVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++  P + + L  +M    ++PD    S ++D L K+
Sbjct: 418 CQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKH 455



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 115/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M   GI+PD +  NTL  G     +++ A  LF+EM R 
Sbjct: 132 ILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRR 191

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y+  I+GLCK+G    +++L R +    C+ ++ AY+ +ID LCK   +  A
Sbjct: 192 GHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDA 251

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +    +  DVVTYS ++HG  + G +++A  LF +M    V PN +TF  L+ G
Sbjct: 252 MDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDG 311

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    S+   +   M +K   P+A   + ++D
Sbjct: 312 LCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMD 345



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 109/222 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   +  A  ++  M  KG +P+   +N L  G    +Q++ A K+ D M   
Sbjct: 307 ILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDK 366

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A    +Y I I+G CK   + E+  L   +   +   D   YS L+ GLC+ GR + A
Sbjct: 367 GCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEA 426

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    L+ D++TYS ++ GL   G +D+A  L   M+E+ + P+++ +  LI G
Sbjct: 427 LNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEG 486

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +     EL  K+    + P     +I++  L K  +S
Sbjct: 487 MFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLS 528



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   EI+ A+ L++EM+ +G +PDV+ ++T+  GL +      A +L  +M+  G
Sbjct: 168 LINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   YT  ID LCK+  + ++++L   +       D+  YS ++ G C  G L  A 
Sbjct: 228 CKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEAT 287

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    ++ + VT++I++ GL  +G + +A  +F  M +    PN  T+  L+ G+
Sbjct: 288 ILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGY 347

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
              N+  +  ++L  M +K   P     +I+++   K    L+   S  V   ++E+   
Sbjct: 348 CLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRR-RLDEAKSLLVEMSEKELTPD 406

Query: 242 NV 243
            V
Sbjct: 407 TV 408



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 112/211 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K+    ++L ++M   G+  +V   N L   L  ++ V  A  +  +M + G+  D  
Sbjct: 104 KKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAI 163

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I+G C  G I E+V LF  +     + D+ +YS +I+GLCKSG   +AL+L   +
Sbjct: 164 TFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKM 223

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  ++V Y+ +I  L  D  ++ A DL  +M +  + P+V+T+ T++HGF  +   
Sbjct: 224 EEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHL 283

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++   L ++M  +NVMP+    +I+VD L K
Sbjct: 284 NEATILFNEMVGRNVMPNTVTFTILVDGLCK 314



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            ++ A   F  M R         +  F+  + K       V L   + +     ++ + +
Sbjct: 72  SIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLN 131

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI+ LC+   +  A+ +   + +  +  D +T++ +I+G   +G++ +A  LF +M   
Sbjct: 132 ILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRR 191

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
              P+VI++ T+I+G  +    S  ++LL KM+EK   P+    + ++D L K+ +
Sbjct: 192 GHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTL 247


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 134/218 (61%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A+ L+ EM  + + P+ V +NTL  GL  + +++ A  LF EM   G
Sbjct: 360 LINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACG 419

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I +D LCKN ++ +++ L + +     + DIQ Y+ +IDG+C++G LE A 
Sbjct: 420 QIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDAR 479

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  +V TY+IM HGL   G +D+A  LF++M+ENA + +  T+ T+  GF
Sbjct: 480 DLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGF 539

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R NE S+ I+LL +M  +    D S  +++V +L+ +
Sbjct: 540 LRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDD 577



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 112/211 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K     L+L  +M S GI  +V   N L      +++V  AF +  ++ + G   DT 
Sbjct: 86  KVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTA 145

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           ++T  I GLC  G I E++ LF  +     + D+  Y+ LI+GLCK+G    A+ L  S+
Sbjct: 146 SFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSM 205

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +G    DVV Y  +IH L  D Q  +A +LF +M    ++PN++T  +L++    + E 
Sbjct: 206 EKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEW 265

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             V  LL++M +  +MP+A  ++ VVD L K
Sbjct: 266 KHVNTLLNEMVDSKIMPNAISLTTVVDALCK 296



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK+++   A NL+SEM++KGI P++V  N+L   L  + + +    L +EM    
Sbjct: 220 LIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSK 279

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  + T  +D LCK G + ++ ++   +     E D+  Y+ LIDG C    ++ A+
Sbjct: 280 IMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAV 339

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       +V +Y+ +I+G     +MDKA  LF +M    + PN +T+ TLIHG 
Sbjct: 340 KVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGL 399

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +      I L  +M     +PD     I++D L KN
Sbjct: 400 CHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKN 437



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 105/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN +C    +  A ++ +++L  G +PD     TL  GL    Q+  A  LFD+M  +
Sbjct: 114 VLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWE 173

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   I+GLCK G+   ++ L R++    C+ D+  Y  LI  LCK  +   A
Sbjct: 174 GFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQA 233

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  ++VT + +++ L N G+    + L  +M ++ + PN I+  T++  
Sbjct: 234 FNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDA 293

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    ++  +++  M +  V PD    + ++D
Sbjct: 294 LCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALID 327



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK   +  A ++   M   G++PDVV +  L  G     +++ A K+FD M   G
Sbjct: 290 VVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKG 349

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  +Y   I+G CK   + +++ LF  +   K   +   Y+ LI GLC  GRL+ A+
Sbjct: 350 CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 409

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +     + D+VTY I++  L  +  +DKA  L   +E + + P++  +  +I G 
Sbjct: 410 ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGM 469

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E     +L   +  K + P+    +I+   L K
Sbjct: 470 CRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCK 506



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 35/240 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +PDVVI+ TL  GL +      A +L   M++  
Sbjct: 150 LIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGN 209

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-------RILKCELDIQA----------- 103
              D   Y   I  LCK+    ++  LF  +        I+ C   + A           
Sbjct: 210 CQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVN 269

Query: 104 -----------------YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                             + ++D LCK G +  A ++   + +  +  DVVTY+ +I G 
Sbjct: 270 TLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGH 329

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               +MD+A  +F  M     APNV ++ TLI+G+ +I    K + L  +M  + ++P+ 
Sbjct: 330 CLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNT 389



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 89/194 (45%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           ++ AL+ ++ ML     P +V    +   + ++ +      L  +M   G+  +  T  +
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I+  C    +  +  +   +  L C+ D  +++ LI GLC  G++  AL LF  +    
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEG 174

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DVV Y+ +I+GL   G    A  L   ME+    P+V+ +GTLIH   +  + ++  
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAF 234

Query: 192 ELLHKMKEKNVMPD 205
            L  +M  K + P+
Sbjct: 235 NLFSEMITKGISPN 248



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN  ++ A+ L   +    + PD+ I+  +  G+    ++E A  LF  +   
Sbjct: 429 ILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSK 488

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY I   GLCK G + E+ +LF  +    C  D   Y+ +  G  ++     A
Sbjct: 489 GLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRA 548

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG-QMDKAHDL 158
           ++L   +       DV T ++++  L +DG    +AH L
Sbjct: 549 IQLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEAHKL 587



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 7/217 (3%)

Query: 14  GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
           G L++ S  LS       ++HN         + ++ A   F+ M           +   +
Sbjct: 29  GMLSIPSPFLS-------LLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKIL 81

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
             + K       + L R +       ++   + LI+  C   R+  A  +   + +    
Sbjct: 82  TSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQ 141

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            D  +++ +I GL  +GQ+ +A  LF  M      P+V+ + TLI+G  +    S  I L
Sbjct: 142 PDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRL 201

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           L  M++ N  PD  +   ++  L K+     +   F+
Sbjct: 202 LRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFS 238


>gi|296087908|emb|CBI35191.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 134/218 (61%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A+ L+ EM  + + P+ V +NTL  GL  + +++ A  LF EM   G
Sbjct: 16  LINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I +D LCKN ++ +++ L + +     + DIQ Y+ +IDG+C++G LE A 
Sbjct: 76  QIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDAR 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  +V TY+IM HGL   G +D+A  LF++M+ENA + +  T+ T+  GF
Sbjct: 136 DLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGF 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R NE S+ I+LL +M  +    D S  +++V +L+ +
Sbjct: 196 LRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDD 233



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 69/122 (56%)

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           C  ++ +Y+ LI+G CK  R++ A+ LF  + R  L+ + VTY+ +IHGL + G++  A 
Sbjct: 6   CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 65

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            LF +M      P+++T+  L+    +     K + LL  ++  N+ PD  I +IV+D +
Sbjct: 66  ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGM 125

Query: 217 AK 218
            +
Sbjct: 126 CR 127



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   G A +  +Y   I+G CK   + +++ LF  +   K   +   Y+ LI GLC  GR
Sbjct: 1   MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L+ A+ LF  +     + D+VTY I++  L  +  +DKA  L   +E + + P++  +  
Sbjct: 61  LQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTI 120

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +I G  R  E     +L   +  K + P+    +I+   L K
Sbjct: 121 VIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCK 162



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN  ++ A+ L   +    + PD+ I+  +  G+    ++E A  LF  +   
Sbjct: 85  ILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSK 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY I   GLCK G + E+ +LF  +    C  D   Y+ +  G  ++     A
Sbjct: 145 GLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +       DV T ++++  L +DG
Sbjct: 205 IQLLEEMLARGFSCDVSTTTLLVGMLSDDG 234


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 128/216 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + I+ A+ L+ EM  + + PD V ++TL  GL  + +++ A  LF EM    
Sbjct: 280 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 339

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I +D LCKN Y+ E++ L + +     + DIQ  +  IDG+C++G LE A 
Sbjct: 340 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 399

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  DV TYSIMI+GL   G +D+A  LF +M+EN    N   + T+  GF
Sbjct: 400 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 459

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +R NE S+ I+LL +M  +    DAS +++ V +L+
Sbjct: 460 LRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLS 495



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 38/250 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH--QVERAFKLFDEMQR 59
           L+    K K     L+L  +M S GI P++   + L      ++  ++  A  LFD+M  
Sbjct: 67  LLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIG 126

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G   D  TY   I+GLCK G    ++ L  ++    C+ ++ AY+ +ID LCK  ++  
Sbjct: 127 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 186

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYN------------------------------- 148
           A  LF  +    +  D+ TY+ +IH L N                               
Sbjct: 187 AFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 246

Query: 149 ----DGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
               +G++ +AHD+   M +     PNVI++ TLI+G+ +I    K + L  +M  + ++
Sbjct: 247 ALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELI 306

Query: 204 PDASIVSIVV 213
           PD    S ++
Sbjct: 307 PDTVTYSTLI 316



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN+ +  A+ L   +    + PD+ ++N    G+    ++E A  LF  +   
Sbjct: 349 ILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSK 408

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+I I+GLC+ G + E+ +LFR +    C L+   Y+ +  G  ++     A
Sbjct: 409 GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRA 468

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      AD  T ++ +  L +DG
Sbjct: 469 IQLLQEMVARGFSADASTMTLFVKMLSDDG 498


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 128/216 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + I+ A+ L+ EM  + + PD V ++TL  GL  + +++ A  LF EM    
Sbjct: 401 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I +D LCKN Y+ E++ L + +     + DIQ  +  IDG+C++G LE A 
Sbjct: 461 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  DV TYSIMI+GL   G +D+A  LF +M+EN    N   + T+  GF
Sbjct: 521 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +R NE S+ I+LL +M  +    DAS +++ V +L+
Sbjct: 581 LRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLS 616



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L  +M S GI P++   + L      +++V  AF +  ++ + G
Sbjct: 67  LLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLG 126

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T+T  I G+C  G I E++ LF  +       D+  Y  LI+GLCK G    A+
Sbjct: 127 HQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAI 186

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +     +V  Y+ +I  L  D Q+ +A +LF +M    ++P++ T+ +LIH  
Sbjct: 187 RLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHAL 246

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M +  +MPD    + VVD L K
Sbjct: 247 CNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK 283



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +PDVV + TL  GL ++     A +L   M +  
Sbjct: 137 LIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN 196

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK+  + E+  LF  +       DI  Y+ LI  LC     +   
Sbjct: 197 CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA 256

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ DVV+++ ++  L  +G++ +AHD+   M +  V PNV+T+  L+ G 
Sbjct: 257 TLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGH 316

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             ++E  + +++   M  K  MP+
Sbjct: 317 CLLSEMDEAVKVFDTMVCKGCMPN 340



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 120/231 (51%), Gaps = 19/231 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+SEM++KGI PD+  +N+L   L  + + +    L +EM    
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++   +D LCK G + E+ ++   +     E ++  Y+ L+DG C    ++ A+
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA---------HDLFLDMEE-------- 164
           ++F ++     + +V++Y+ +I+G     ++DKA            +L+M+E        
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTM 386

Query: 165 --NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                 PNVI++ TLI+G+ +I    K + L  +M  + ++PD    S ++
Sbjct: 387 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 437



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++ +++L  G +PD     TL  G+    ++  A  LFD+M  +
Sbjct: 101 ILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGE 160

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GLCK G    ++ L  ++    C+ ++ AY+ +ID LCK  ++  A
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ +IH L N  +      L  +M ++ + P+V++F T++  
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  + ++  +++ KM ++ V P+    + ++D
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMD 314



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN+ +  A+ L   +    + PD+ ++N    G+    ++E A  LF  +   
Sbjct: 470 ILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSK 529

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+I I+GLC+ G + E+ +LFR +    C L+   Y+ +  G  ++     A
Sbjct: 530 GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRA 589

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      AD  T ++ +  L +DG
Sbjct: 590 IQLLQEMVARGFSADASTMTLFVKMLSDDG 619



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 79/187 (42%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           HN         + ++ A   F+ M R      T  +   +  + K  +    + L   + 
Sbjct: 29  HNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD 88

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
                 +I     LI+  C   R+  A  +   + +     D  T++ +I G+  +G++ 
Sbjct: 89  SFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIG 148

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +A  LF  M      P+V+T+GTLI+G  ++   S  I LL  M +KN  P+    + ++
Sbjct: 149 EALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTII 208

Query: 214 DLLAKNE 220
           D L K+ 
Sbjct: 209 DSLCKDR 215


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 129/218 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + I+ A+ L+ EM  + + PD V ++TL  GL  + +++ A  LF EM    
Sbjct: 347 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 406

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I +D LCKN Y+ E++ L + +     + DIQ  +  IDG+C++G LE A 
Sbjct: 407 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 466

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  DV TYSIMI+GL   G +D+A  LF +M+EN    N   + T+  GF
Sbjct: 467 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 526

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R NE S+ I+LL +M  +    DAS +++ V +L+ +
Sbjct: 527 LRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDD 564



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 119/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+SEM++KGI PD+  +N+L   L  + + +    L +EM    
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++   +D LCK G + E+ ++   +     E ++  Y+ L+DG C    ++ A+
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++     + +V++Y+ +I+G     ++DKA  LF +M    + P+ +T+ TLIHG 
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 386

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M   + +P+     I++D L KN 
Sbjct: 387 CHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNR 425



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 112/214 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++ +++L  G +PD     TL  G++   ++  A  LFD+M  +
Sbjct: 101 ILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGE 160

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GLCK G    ++ L  ++    C+ ++ AY+ +ID LCK  ++  A
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ +IH L N  +      L  +M ++ + P+V++F T++  
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  + ++  +++ KM ++ V P+    + ++D
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMD 314



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L  +M S GI P++   + L      +++V  AF +  ++ + G
Sbjct: 67  LLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLG 126

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T+T  I G+   G I E++ LF  +       D+  Y  LI+GLCK G    A+
Sbjct: 127 HQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAI 186

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +     +V  Y+ +I  L  D Q+ +A +LF +M    ++P++ T+ +LIH  
Sbjct: 187 RLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHAL 246

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M +  +MPD    + VVD L K
Sbjct: 247 CNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK 283



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G     +I  AL+L+ +M+ +G +PDVV + TL  GL ++     A +L   M +  
Sbjct: 137 LIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN 196

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK+  + E+  LF  +       DI  Y+ LI  LC     +   
Sbjct: 197 CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA 256

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ DVV+++ ++  L  +G++ +AHD+   M +  V PNV+T+  L+ G 
Sbjct: 257 TLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGH 316

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             ++E  + +++   M  K  MP+
Sbjct: 317 CLLSEMDEAVKVFDTMVCKGCMPN 340



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN+ +  A+ L   +    + PD+ ++N    G+    ++E A  LF  +   
Sbjct: 416 ILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSK 475

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+I I+GLC+ G + E+ +LFR +    C L+   Y+ +  G  ++     A
Sbjct: 476 GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRA 535

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      AD  T ++ +  L +DG
Sbjct: 536 IQLLQEMVARGFSADASTMTLFVKMLSDDG 565



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           HN         + ++ A   F+ M R      T  +   +  + K  +    + L   + 
Sbjct: 29  HNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD 88

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
                 +I     LI+  C   R+  A  +   + +     D  T++ +I G+Y +G++ 
Sbjct: 89  SFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIG 148

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +A  LF  M      P+V+T+GTLI+G  ++   S  I LL  M +KN  P+    + ++
Sbjct: 149 EALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTII 208

Query: 214 DLLAKNE 220
           D L K+ 
Sbjct: 209 DSLCKDR 215


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 127/218 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A+ L+ EM  +G+ PD V +NTL  GL  + ++  A  LF EM   G
Sbjct: 340 LINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYG 399

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I  D LCKN  + E++ L + +     + DI  YS ++DG+C++G LE A 
Sbjct: 400 QIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAAR 459

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  L    L  DV TY+IMI+GL   G + +A  LF +M+EN  +PN  T+  +  GF
Sbjct: 460 DLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGF 519

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R NE  + I+L  +M  +    D S  +++V++L+ +
Sbjct: 520 LRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDD 557



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  AL+L+S+ML+KGI P+   +++L  GL  +   + A +LF  M    
Sbjct: 200 IIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRK 259

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   +D LCK G +V++  +   +     + D+  Y+ L+DG C    +   +
Sbjct: 260 IMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTV 319

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F ++ R   V  V++Y+ +I+G      MDKA  LF +M +  + P+ +T+ TLIHG 
Sbjct: 320 NVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGL 379

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M     +PD     I+ D L KN 
Sbjct: 380 CHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNH 418



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    + K     L+LY +M S GI  +    N L      ++++  AF +  ++ + G
Sbjct: 60  LLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLG 119

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T T+T  I GLC  G I E+++LF  +     + D+  Y  LI+GLCK G    A+
Sbjct: 120 YQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAI 179

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
               S+ +      VV YS +I  L  D Q+ +A  LF DM    ++PN  T+ +LIHG 
Sbjct: 180 RFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGL 239

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    + I L + M  + +MPD    + +VD L K
Sbjct: 240 CILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCK 276



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 102/214 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++  ++L  G +P      TL  GL    ++  A +LFD+M  +
Sbjct: 94  ILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE 153

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GLCK G    ++   R++    C   +  YS +ID LCK  +L  A
Sbjct: 154 GFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEA 213

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +  +  TYS +IHGL   G   +A  LF  M    + P+ +TF TL+  
Sbjct: 214 LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDA 273

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +     K   ++  M + ++ PD    + ++D
Sbjct: 274 LCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMD 307



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 110/220 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL L+ +M  +G +PDV+ + TL  GL ++     A +    M++  
Sbjct: 130 LIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRN 189

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y+  ID LCK+  + E++ LF  +       +   YS LI GLC  G  + A+
Sbjct: 190 CRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAI 249

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+++    ++ D +T++ ++  L  +G + KAH +   M ++ + P+V+T+ +L+ G 
Sbjct: 250 RLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGH 309

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
              +E  K + +   M  K  +P     + +++   K +I
Sbjct: 310 CLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQI 349



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +  CKN  +  A+ L   +    + PD+ I++ +  G+    ++E A  LF ++   
Sbjct: 409 ILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSK 468

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D RTYTI I+GLC+ G + E+ +LF  +    C  +   Y+ +  G  ++     A
Sbjct: 469 GLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRA 528

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDG 150
           ++LF   L RG  + DV T ++++  L +DG
Sbjct: 529 IQLFQEMLSRGFSI-DVSTTTLLVEMLSDDG 558



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 35/219 (15%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           I+ AL+L++ ML     P +V  + L   +  +        L+ +M   G+  +T T  I
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
                                              LI+  C   RL  A  +   + +  
Sbjct: 95  -----------------------------------LINSFCHLNRLGFAFSVLGDILKLG 119

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                 T++ +I GL  +G++ +A  LF  M      P+V+T+GTLI+G  ++   S  I
Sbjct: 120 YQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAI 179

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
             L  M+++N  P   + S ++D L K+     +L  F+
Sbjct: 180 RFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFS 218


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 136/221 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK++ I+ A  L ++M  K + P+ V +NTL  GL     +  A +LF +M   
Sbjct: 266 ILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSS 325

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  + RTY+I +DGLCK+G++ E+++L  +++  K E DI  Y+ LI G+  +G+LE+A
Sbjct: 326 GMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVA 385

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    +   V TY+IMI GL  +G  D+A+ LF  ME++   P+  ++  +I G
Sbjct: 386 KELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQG 445

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F++  +PS  I+L+ +M  +    D+S   +++DL + +EI
Sbjct: 446 FLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLDLESHDEI 486



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 125/242 (51%), Gaps = 5/242 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   I  A+++ S+M   GI+PD V   TL  GL    +++ A +LF+EM   
Sbjct: 126 ILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGR 185

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T T+TI +D LCK G + E+  +F T+     E +I  Y+ L++G C    +  A
Sbjct: 186 DAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDA 245

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +        V +YSI+I+G     ++D+A  L   M E  + PN +T+ TL+ G
Sbjct: 246 SKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQG 305

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEE 237
               +   +  EL  KM    ++P+    SI++D L K+   E +L  L S  + ER+ E
Sbjct: 306 LCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTS--MQERKLE 363

Query: 238 VD 239
            D
Sbjct: 364 PD 365



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 123/255 (48%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK   +  A  ++  M  KG++P++  +N L  G     ++  A K+F+ M   
Sbjct: 196 ILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGK 255

Query: 61  GVAADTRTYTIFIDGLCKNGYI-----------------------------------VES 85
           G A    +Y+I I+G CK+  I                                   +E+
Sbjct: 256 GCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEA 315

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ELF+ +       +++ YS L+DGLCK G LE AL+L  S+    L  D+V Y+I+I G
Sbjct: 316 QELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQG 375

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           ++  G+++ A +LF  +  N + P+V T+  +I G ++     +  +L  KM++   +PD
Sbjct: 376 MFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPD 435

Query: 206 ASIVSIVVDLLAKNE 220
           +   ++++    +N+
Sbjct: 436 SCSYNVIIQGFLQNQ 450



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           I+ A+  +  M+    +P  V        + +  Q      L ++M   GVA +  T  I
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I+ LC+  +I  +V +   +  L  + D   ++ LI+GLC  GR++ A+ELF+ +    
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF---IRINEPS 188
            + + VT++I++  L   G + +A  +F  M E  V PN+ T+  L++G+   + +N+ S
Sbjct: 187 AMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDAS 246

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           KV E+   M  K   P     SI+++   K+ 
Sbjct: 247 KVFEI---MVGKGCAPSVHSYSILINGYCKSR 275


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 133/220 (60%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A  L+ EM  K + P+ V +NTL  GL  + +++ A  LF EM   G
Sbjct: 353 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHG 412

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I +D LCK  ++ E++ L +T+     + DIQ Y+ +IDG+C++G LE A 
Sbjct: 413 QIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 472

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F +L    L  +V TY+IMI+GL   G +D+A+ LF++M+ N  +P+  T+ T+  G 
Sbjct: 473 DIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 532

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++  E  + I+LL +M  +    D S  +++V++L  +++
Sbjct: 533 LQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKL 572



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K+     +L ++M S GI PDV   N L      +++   AF +  ++ + G
Sbjct: 73  LLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLG 132

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT T+T  I GLC  G I +++ LF  +     + ++  Y  LI+GLCK G    A+
Sbjct: 133 LQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 192

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +G    DVV Y+ +I  L  D Q+ +A +LF  M    ++P++ T+ +LIH  
Sbjct: 193 RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 252

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M    +MPD  I S VVD L K
Sbjct: 253 CNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 289



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+S+M+ +GI PD+  + +L   L  + + +    L ++M    
Sbjct: 213 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 272

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  +D LCK G I E+ ++   + I   E ++  Y+ L+DG C    ++ A+
Sbjct: 273 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 332

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       +V++Y+ +I+G     +MDKA  LF +M +  + PN +T+ TL+HG 
Sbjct: 333 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +      I L H+M     +PD +   I++D L K
Sbjct: 393 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 429



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 35/240 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 143 LIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN 202

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  ID LCK+  + E+  LF  +       DI  Y+ LI  LC     +   
Sbjct: 203 CQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVT 262

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD------------------------ 157
            L + +    ++ DVV +S ++  L  +G++ +AHD                        
Sbjct: 263 TLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGH 322

Query: 158 -----------LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                      +F  M  N  APNVI++ TLI+G+ +I    K   L  +M +K ++P+ 
Sbjct: 323 CLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNT 382



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 106/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C       A ++ +++L  G++PD     TL  GL    ++  A  LFD+M  +
Sbjct: 107 ILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE 166

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ D+  Y+ +ID LCK  ++  A
Sbjct: 167 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 226

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ +IH L N  +      L   M  + + P+V+ F T++  
Sbjct: 227 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 286

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  + ++  +++  M  + V P+    + ++D
Sbjct: 287 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMD 320



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 35/209 (16%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           ++ AL+ ++ ML     P  V  N L   + +  Q    F L ++M   G+  D  T  I
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
                                              LI+  C   R   A  +   + +  
Sbjct: 108 -----------------------------------LINSFCHLNRPGFAFSVLAKILKLG 132

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           L  D  T++ +I GL  +G++  A  LF  M      PNV+T+GTLI+G  ++   +  I
Sbjct: 133 LQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 192

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LL  M++ N  PD  + + ++D L K+ 
Sbjct: 193 RLLRSMEQGNCQPDVVVYTSIIDSLCKDR 221



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK   ++ A+ L   +    + PD+ I+  +  G+    ++E A  +F  +   
Sbjct: 422 ILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSK 481

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  + RTYTI I+GLC+ G + E+ +LF  +    C  D   Y+ +  GL ++     A
Sbjct: 482 GLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRA 541

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYND 149
           ++L   +      ADV T ++++  L +D
Sbjct: 542 IQLLQEMLARGFSADVSTTTLLVEMLCDD 570


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 126/212 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK  +I+ A+ L+ EM  K   PD   +NTL  GL  + +++ A  LF EM   G
Sbjct: 351 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARG 410

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I +D LCKN ++ E++ L + +       DIQ Y+ +IDG+C++G LE A 
Sbjct: 411 QMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAAR 470

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L   V TY+IMIHGL   G +++A+ LF++M+ N  +P+  T+ T+  GF
Sbjct: 471 DLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGF 530

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           ++ NE  + I+LL +M  +    D+  + + V
Sbjct: 531 LQNNETLRAIQLLEEMLARGFSADSCFLMLSV 562



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+S+M+ +GI PD+  + +L   L  + + +    L ++M    
Sbjct: 211 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 270

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  +D LCK G + E+ E+   +     E D+  Y+ L+DG C    ++ A+
Sbjct: 271 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 330

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + R     DV++Y+ +I+G     ++DKA  LF +M      P+  T+ TL++G 
Sbjct: 331 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGL 390

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M  +  MPD    SI++D L KN 
Sbjct: 391 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNR 429



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L ++M S G+ P+V   N L      +++V  AF +  ++ + G
Sbjct: 71  LLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLG 130

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I GLC  G I E++ LF  +     + ++  Y  LI+GLCK G    A+
Sbjct: 131 HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 190

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +G    DVV Y+ +I  L  D Q+ +A +LF  M    ++P++ T+ +L+H  
Sbjct: 191 RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 250

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M    ++PD  I S VVD L K
Sbjct: 251 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK 287



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK  ++  A  +   M+ +G++PDVV + TL  G     +++ A K+FD M R G
Sbjct: 281 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 340

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  +YT  I+G CK   I +++ LF  +   +   D + Y+ L+ GLC  GRL+ A+
Sbjct: 341 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAI 400

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +     + D+VTYSI++  L  +  +++A  L   +E + + P++  +  +I G 
Sbjct: 401 ALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 460

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E     +L   +  K + P     +I++  L K
Sbjct: 461 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCK 497



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++ +++L  G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 105 ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ D+  Y+ +ID LCK  ++  A
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 224

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ ++H L N  +      L   M  + + P+V+ F T++  
Sbjct: 225 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 284

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  + ++  E++  M ++ V PD    + ++D
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMD 318



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 141 LIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN 200

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  ID LCK+  + E+  LF  +       DI  Y+ L+  LC     +   
Sbjct: 201 CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT 260

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ DVV +S ++  L  +G++ +AH++   M +  V P+V+T+ TL+ G 
Sbjct: 261 TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGH 320

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              +E  + +++   M  K   PD
Sbjct: 321 CLQSEMDEAVKVFDMMVRKGFAPD 344



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI+  C   R+  A  +   + +     D  T++ +I GL  +G++ +A  LF  M +  
Sbjct: 106 LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 165

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             PNV+T+GTLI+G  ++   S  I LL  M++ N  PD  I + ++D L K+ 
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDR 219



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN+ +E A+ L   + +  + PD+ ++N +  G+    ++E A  LF  +   
Sbjct: 420 ILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSK 479

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY I I GLCK G + E+ +LF  +    C  D   Y+ +  G  ++     A
Sbjct: 480 GLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRA 539

Query: 121 LELFHS-LPRG 130
           ++L    L RG
Sbjct: 540 IQLLEEMLARG 550



 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +  A  L+ EM      PD   +NT+  G  + ++  RA +L +EM   
Sbjct: 490 IMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLAR 549

Query: 61  GVAADT------------RTYTIFI 73
           G +AD+            R Y IFI
Sbjct: 550 GFSADSCFLMLSVLSEDDRRYFIFI 574


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 136/221 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK++ ++ A +L +EM  K + PD V ++TL  GL ++ + + A  LF EM   
Sbjct: 378 ILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSY 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY I +DG CK+G++ E+++L ++++  K E +I  Y+ LI+G+  +G+LE+A
Sbjct: 438 GPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L       D+ TY++MI GL  +G  D+A+DLF  ME++   PN  ++  +I G
Sbjct: 498 KELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQG 557

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F++  + S  I L+ +M  K    + S   +++DL +++EI
Sbjct: 558 FLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEI 598



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  A+   SEM+ +GI P+V  +N++  G   + Q+  A +LF EM    
Sbjct: 239 IIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRD 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +T T+TI +DGLCK G + E+  +F T+     E DI  Y+ L+DG C    +  A 
Sbjct: 299 VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAK 358

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + R        +Y+I+I+G     +MD+A  L  +M   A+ P+ +T+ TL+ G 
Sbjct: 359 KVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 418

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++  P + + L  +M      P+     I++D   K+
Sbjct: 419 CQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKH 456



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 115/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   ++ ++++  +M   GI PD +  N L  GL    +++ A +LF+EM + 
Sbjct: 133 ILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKR 192

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +YT  I+GLCK G    +V++F+ +    C+ ++  YS +ID LCK   +  A
Sbjct: 193 GHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDA 252

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +    +  +V TY+ ++HG  N GQ+++A  LF +M    V PN +TF  L+ G
Sbjct: 253 MEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDG 312

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    S+   +   M EK V PD S  + ++D
Sbjct: 313 LCKEGMVSEARLVFETMTEKGVEPDISTYNALMD 346



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +  + K K+    ++L ++M    +  +V   N L   L  ++ V+ +  +  +M + G
Sbjct: 99  FLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLG 158

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   I+GLC  G I E+VELF  +     E ++ +Y+ +I+GLCK+G   +A+
Sbjct: 159 IHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAV 218

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +     +VVTYS +I  L  D  ++ A +   +M E  + PNV T+ +++HGF
Sbjct: 219 DVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGF 278

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + ++   L  +M  ++VMP+    +I+VD L K
Sbjct: 279 CNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCK 315



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   +I+ A+ L++EM+ +G +P+V+ + T+  GL +      A  +F +M+++G
Sbjct: 169 LINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNG 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  ID LCK+  + +++E    +       ++  Y+ ++ G C  G+L  A 
Sbjct: 229 CKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEAT 288

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    ++ + VT++I++ GL  +G + +A  +F  M E  V P++ T+  L+ G+
Sbjct: 289 RLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGY 348

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                +NE  KV E+   M  K   P A   +I+++   K+ 
Sbjct: 349 CLQRLMNEAKKVFEI---MIRKGCAPGAHSYNILINGYCKSR 387



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 106/222 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   +  A  ++  M  KG++PD+  +N L  G      +  A K+F+ M R 
Sbjct: 308 ILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRK 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A    +Y I I+G CK+  + E+  L   +       D   YS L+ GLC+ GR + A
Sbjct: 368 GCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEA 427

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +       ++VTY I++ G    G +D+A  L   M+E  + PN++ +  LI G
Sbjct: 428 LNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEG 487

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +     EL  K+      PD    ++++  L K  +S
Sbjct: 488 MFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLS 529



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 86/175 (49%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           V+ A   F  M R         +  F+    K       V L   + + +   ++ + + 
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI+ LC+   ++ ++ +   + +  +  D +T++ +I+GL N+G++ +A +LF +M +  
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             PNVI++ T+I+G  +    S  +++  KM++    P+    S ++D L K+ +
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRL 248


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 130/221 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK++ +  A  L SEM  + + PD V ++TL  G  +  + + A KLF EM   
Sbjct: 356 ILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSY 415

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+ TY+I +DGLCK+G++ E+  L + ++  K E  I  Y+ LI G+C  G+LE A
Sbjct: 416 GLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAA 475

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF +L    +   VVTY++MI GL  +G  ++A ++F  M  N   PN  T+   I G
Sbjct: 476 RELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQG 535

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F+R  +PS  + L+ +M  +    D+S   +++DL + +EI
Sbjct: 536 FLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLESNDEI 576



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 119/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++    A+  +SEM+ +GI P+VV ++++  G   + Q+  A  LF +M    
Sbjct: 217 VIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN 276

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +T T+TI +DGLCK G I+E+  +F  +     E D   YS L+DG C   +++ A 
Sbjct: 277 VMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQ 336

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +        V  Y+I+I+G     ++++A  L  +M +  + P+ +T+ TL+ GF
Sbjct: 337 KLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGF 396

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   P    +L  +M    ++PD+   SI++D L K+
Sbjct: 397 CQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKH 434



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 113/219 (51%), Gaps = 8/219 (3%)

Query: 1   ILINGYCKNKE--IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           ILIN  C +    +  A +   +M   G++P  V   TL  GL    ++  A KLFDE+ 
Sbjct: 109 ILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIG 168

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           + G A    TYT  I GLCK G+   +++L + +    C+ D+ AY+ +ID LCK  R  
Sbjct: 169 KMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRAN 228

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+  F  +    +  +VVTYS ++HG  N GQ+++A  LF  M    V PN +TF  L+
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILV 288

Query: 179 HGFIR---INEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            G  +   I E  +V E+   M E  V PDA   S ++D
Sbjct: 289 DGLCKEGMILEARRVFEM---MTENGVEPDAYTYSALMD 324



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 109/222 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   I  A  ++  M   G++PD   ++ L  G     Q++ A KLFD M   
Sbjct: 286 ILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGK 345

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A   R Y I I+G CK+  + E+  L   +       D   YS L+ G C++GR ++A
Sbjct: 346 GFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVA 405

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    L+ D +TYSI++ GL   G +D+A  L   M+E+ + P++  +  LI G
Sbjct: 406 QKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQG 465

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +     EL   +  K + P     ++++  L K  +S
Sbjct: 466 MCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLS 507



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 104/213 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C   +I  A+ L+ E+   G  P ++ + T+  GL +I     A +L  +M+  G
Sbjct: 147 LLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKG 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   ID LCK+    E++  F  +       ++  YS ++ G C  G+L  A 
Sbjct: 207 CKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEAT 266

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    ++ + VT++I++ GL  +G + +A  +F  M EN V P+  T+  L+ G+
Sbjct: 267 SLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGY 326

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              ++  +  +L   M  K   P   + +I+++
Sbjct: 327 CLQSQMDEAQKLFDIMVGKGFAPSVRVYNILIN 359



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ--VERAFKLFDEMQR 59
           L+    K K     ++L  +M    I+P+V     L   L   ++  V  AF    +M +
Sbjct: 75  LLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFK 134

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+     T+   ++GLC    I+++V+LF  +  +     +  Y+ +I GLCK G    
Sbjct: 135 LGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTN 194

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+L   +       DVV Y+ +I  L  D + ++A   F +M +  + PNV+T+ +++H
Sbjct: 195 ALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILH 254

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF  + + ++   L  +M  +NVMP+    +I+VD L K
Sbjct: 255 GFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCK 293


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 129/219 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+ + ++ A+ L  +M  +G+  D V +NTL  GL  + +++ A  LF EM   
Sbjct: 435 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 494

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I +D LCKN ++ E++ L + +     + DI  Y+  IDG+C++G LE A
Sbjct: 495 GQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA 554

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF +L    L  DV TY+IMIHGL   G +D+A+ LF  M+EN  + +   + T+I G
Sbjct: 555 RDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRG 614

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F+R NE     +LL +M  +    D S  +++V++L+ +
Sbjct: 615 FLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDD 653



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+SEM++KGI PD+  +N+L   L  + + +    L +EM    
Sbjct: 296 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++  +D LCK G I  + ++   +     E D+  Y+ L+DG C    ++ A+
Sbjct: 356 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++     V +V +Y+I+I+G     +MDKA  L   M    +  + +T+ TLIHG 
Sbjct: 416 KVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +      I L H+M     +PD     I++D L KN
Sbjct: 476 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKN 513



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L ++M S GI PDV   N L      + ++  AF +  ++ + G
Sbjct: 156 LLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I GLC  G I E++ LF        + D+  Y  L++GLCK G    A+
Sbjct: 216 CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAI 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +     +V+ Y+ +I  L  D Q+ +A +LF +M    ++P++ T+ +LIH  
Sbjct: 276 RLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHAL 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M    +MP+  + S VVD L K
Sbjct: 336 CNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 372



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C  + +  A ++ +++L  G +PD    NTL  GL    ++  A  LFD+   +
Sbjct: 190 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++GLCK G    ++ L R++    C  ++ AY+ +ID LCK  ++  A
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ +IH L N  +      L  +M  + + PNV+ F T++  
Sbjct: 310 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    +   +++  M ++ V PD    + ++D
Sbjct: 370 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMD 403



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ + + +G +PDVV + TL  GL ++     A +L   M +  
Sbjct: 226 LIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK+  + E+  LF  +       DI  Y+ LI  LC     +   
Sbjct: 286 CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ +VV +S ++  L  +G +  AHD+   M +  V P+V+T+  L+ G 
Sbjct: 346 TLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGH 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              +E  + +++   M  K  +P+    +I+++
Sbjct: 406 CLRSEMDEAVKVFDTMVHKGCVPNVRSYNILIN 438



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN  +  A+ L   +    +  D++++N    G+    ++E A  LF  +   
Sbjct: 505 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSK 564

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D RTY I I GLCK G + E+ +LFR +    C  D   Y+ +I G  +S     A
Sbjct: 565 GLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGA 624

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            +L   +      ADV T ++++  L +DG
Sbjct: 625 TQLLQEMLAEGFSADVSTTTLIVEMLSDDG 654



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%)

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           + ++ A   F+ M        T  +T  +  + K  +    + L   +       D+   
Sbjct: 129 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI+  C   RL  A  +   L +     D  T++ +I GL  +G++ +A  LF     
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               P+V+T+GTL++G  ++   S  I LL  M +KN  P+    + ++D L K+ 
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDR 304


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 132/221 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK+K +  A  L SEM  K + PD V ++TL  GL ++ +   A  LF EM   
Sbjct: 381 ILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSS 440

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y+I +DG CK+G++ E+++L + +   + + +I  Y+ LI G+  +G+LE+A
Sbjct: 441 GLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVA 500

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    +  D+ TY++MI GL  +G  D+A++ F  ME++   P+  ++  +I G
Sbjct: 501 KELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQG 560

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F++  + S  I+L+ +M  K    D+S   +++DL + +EI
Sbjct: 561 FLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDEI 601



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  A+   SEM+ +GI PDVV +NT+  G   + Q+  A +LF EM    
Sbjct: 242 IIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRN 301

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T+ I +DGLCK G + E+  +  T+     E +   Y+ L+DG C   +++ A+
Sbjct: 302 VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAI 361

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +       ++ +Y+I+I+G     +M++A  L  +M E  + P+ +T+ TL+ G 
Sbjct: 362 KVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGL 421

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++  P + + L  +M    ++PD    SI++D   K
Sbjct: 422 CQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCK 458



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 115/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  C+   ++ A+++  +M   GI+PD +  NTL  GL    +++ A  LF+EM   
Sbjct: 136 VLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+GLCKNG  + +V +FR +   + + ++  Y+ +ID LCK   +  A
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEA 255

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +    +  DVVTY+ ++HG  + GQ+++A  LF +M    V P+ +TF  L+ G
Sbjct: 256 VEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDG 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    S+   +   M EK   P+A   + ++D
Sbjct: 316 LCKEGMVSEARCVSETMTEKGAEPNAYTYNALMD 349



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 116/211 (54%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K+   A++L ++M   G+  +V   N L   L  +  V+ A  +  +M + G+  D  
Sbjct: 108 KKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAI 167

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I+GLC  G I E+V LF  +     E ++ +Y+ +I+GLCK+G   +A+ +F  +
Sbjct: 168 TFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKM 227

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     +VVTY+ +I  L  D  +++A +   +M +  + P+V+T+ T++HGF  + + 
Sbjct: 228 EQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQL 287

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++   L  +M  +NVMPD    +I+VD L K
Sbjct: 288 NEATRLFKEMVGRNVMPDTVTFNILVDGLCK 318



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 106/222 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   +  A  +   M  KG +P+   +N L  G    +Q++ A K+   M   
Sbjct: 311 ILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGK 370

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A +  +Y I I+G CK+  + E+  L   +       D   YS L+ GLC+ GR   A
Sbjct: 371 GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREA 430

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    L+ D++ YSI++ G    G +D+A  L  +M E  + PN+I +  LI G
Sbjct: 431 LNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRG 490

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +     EL  K+    + PD    ++++  L K  +S
Sbjct: 491 MFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLS 532



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 116/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   +I+ A+ L++EM+  G +P+V+ +NT+  GL +      A ++F +M+++ 
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNR 231

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   ID LCK+  + E+VE    +       D+  Y+ ++ G C  G+L  A 
Sbjct: 232 GKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEAT 291

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    ++ D VT++I++ GL  +G + +A  +   M E    PN  T+  L+ G+
Sbjct: 292 RLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGY 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N+  + I++L  M  K   P+ S  +I+++   K++
Sbjct: 352 CLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSK 390



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CKN     A+ ++ +M     KP+VV +NT+   L +   V  A +   EM   G
Sbjct: 207 VINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRG 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G C  G + E+  LF+ +       D   ++ L+DGLCK G +  A 
Sbjct: 267 IPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEAR 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++       +  TY+ ++ G     QMD+A  +   M     APN+ ++  LI+G+
Sbjct: 327 CVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGY 386

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    ++   LL +M EKN+ PD    S ++  L +
Sbjct: 387 CKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQ 423



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 84/176 (47%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            ++ A   F  M R         +  F+  + K      +V L   + +     ++ + +
Sbjct: 76  SIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLN 135

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI+ LC+   ++ A+ +   + +  +  D +T++ +I+GL N+G++ +A  LF +M  +
Sbjct: 136 VLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
              PNVI++ T+I+G  +       + +  KM++    P+    + ++D L K+ +
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRL 251


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 127/216 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A+ L+ EM  + + P+ V +NTL  GL  + +++ A  LF EM   G
Sbjct: 356 LINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 415

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY    D LCKN ++ +++ L + +     + DIQ Y+ ++DG+C++G LE A 
Sbjct: 416 QIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDAR 475

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  +V TY+IMIHGL   G + +A  LF +M +N  +PN  T+  +  GF
Sbjct: 476 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +R NE  + IELL +M  +    D S  +++V +L+
Sbjct: 536 LRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLS 571



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK++++  A N++SEM++KGI P++V +N+L  GL ++ + +    L +EM    
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSK 275

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T    +D LCK G + E+ ++   +     E ++  Y+ L+DG C    +++A+
Sbjct: 276 IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAV 335

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++     VA+V++Y+ +I+G      +DKA  LF +M    + PN +T+ TLIHG 
Sbjct: 336 KVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 395

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M  +  +PD      + D L KN 
Sbjct: 396 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNR 434



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L  +M S GI PDV     +   L  +++V+ AF    ++ + G
Sbjct: 76  LLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLG 135

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I GLC  G I E++ LF  +     + ++  Y  LI+GLCK G    A+
Sbjct: 136 HQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAI 195

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +G    +VV +S +I  L  D Q+ +A ++F +M    ++PN++T+ +LIHG 
Sbjct: 196 RLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGL 255

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++ E   V  L+++M +  +MPD   ++ VVD L K
Sbjct: 256 CKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 292



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 116/225 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C   E++ A+ ++  M+ K    +V+ +NTL  G  +I  V++A  LF+EM R  
Sbjct: 321 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 380

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   I GLC  G + +++ LF  +       D+  Y  L D LCK+  L+ A+
Sbjct: 381 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 440

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++       D+  Y+ ++ G+   G+++ A DLF ++    + PNV T+  +IHG 
Sbjct: 441 ALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 500

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            +    ++  +L  +M +    P+    +++     +N  +L ++
Sbjct: 501 CKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK   +  A ++   M+ +G++P+VV +N L  G    ++V+ A K+FD M    
Sbjct: 286 VVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD 345

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  +Y   I+G CK   + +++ LF  +   +   +   Y+ LI GLC  GRL+ A+
Sbjct: 346 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 405

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +     + D+VTY  +   L  +  +DKA  L   +E +   P++  + T++ G 
Sbjct: 406 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGM 465

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E     +L   +  K + P+    +I++  L K
Sbjct: 466 CRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 502



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 113/235 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 146 LIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN 205

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   ++  ID LCK+  + E+  +F  +       +I  Y+ LI GLCK    +   
Sbjct: 206 CQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 265

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ DV T + ++  L  +G + +AHD+   M    V PNV+T+  L+ G 
Sbjct: 266 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
              NE    +++   M  K+ + +    + +++   K +    ++  F    RQE
Sbjct: 326 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 380



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 4/207 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C    ++ A +  +++L  G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ ++  +S LID LCK  ++  A
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    +  ++VTY+ +IHGL    +      L  +M ++ + P+V T  T++  
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 181 FIR---INEPSKVIELL-HKMKEKNVM 203
             +   + E   V++++ H+  E NV+
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVV 316



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 7/207 (3%)

Query: 14  GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
           G L+L    LS         HNT        + ++ A   F+ M        T  +   +
Sbjct: 25  GMLSLPPPFLSSS-------HNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLL 77

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
             + K  +    + L R +       D+   + +I+ LC   R++ A      + +    
Sbjct: 78  TSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQ 137

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            D  T++ +I GL  +G++ +A  LF  M      PNV+T+GTLI+G  ++   S  I L
Sbjct: 138 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRL 197

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKNE 220
           L  M++ N  P+  + S ++D L K+ 
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDR 224



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CKN+ ++ A+ L   +      PD+ I+ T+  G+    ++E A  LF  +   G+  + 
Sbjct: 431 CKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV 490

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY I I GLCK G + E+ +LF  +    C  +   Y+ +  G  ++      +EL   
Sbjct: 491 WTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEE 550

Query: 127 -LPRGVLVADVVTYSIMIHGLYNDG 150
            L RG  V DV T ++++  L +DG
Sbjct: 551 MLARGFSV-DVSTTTLLVGMLSDDG 574



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+  E+E A +L+S + SKG++P+V  +N +  GL +   +  A KLF EM ++G
Sbjct: 461 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            + +  TY +   G  +N   + ++EL   +      +D+   + L+  L   G
Sbjct: 521 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +  A  L+SEM   G  P+   +N +  G    ++  R  +L +EM   
Sbjct: 495 IMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLAR 554

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G + D  T T+ +  L  +G
Sbjct: 555 GFSVDVSTTTLLVGMLSDDG 574


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 127/216 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A+ L+ EM  + + P+ V +NTL  GL  + +++ A  LF EM   G
Sbjct: 356 LINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 415

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY    D LCKN ++ +++ L + +     + DIQ Y+ ++DG+C++G LE A 
Sbjct: 416 QIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDAR 475

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  +V TY+IMIHGL   G + +A  LF +M +N  +PN  T+  +  GF
Sbjct: 476 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +R NE  + IELL +M  +    D S  +++V +L+
Sbjct: 536 LRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLS 571



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK++++  A N++SEM++KGI P++V +N+L  GL ++ + +    L +EM    
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSK 275

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T    +D LCK G + E+ ++   +     E ++  Y+ L+DG C    +++A+
Sbjct: 276 IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAV 335

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++     VA+V++Y+ +I+G      +DKA  LF +M    + PN +T+ TLIHG 
Sbjct: 336 KVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 395

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M  +  +PD      + D L KN 
Sbjct: 396 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNR 434



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L  +M S GI PDV     +   L  +++V+ AF    ++ + G
Sbjct: 76  LLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLG 135

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I GLC  G I E++ LF  +     + ++  Y  LI+GLCK G    A+
Sbjct: 136 HQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAI 195

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +G    +VV +S +I  L  D Q+ +A ++F +M    ++PN++T+ +LIHG 
Sbjct: 196 RLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGL 255

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++ E   V  L+++M +  +MPD   ++ VVD L K
Sbjct: 256 CKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 292



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 116/225 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C   E++ A+ ++  M+ K    +V+ +NTL  G  +I  V++A  LF+EM R  
Sbjct: 321 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 380

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   I GLC  G + +++ LF  +       D+  Y  L D LCK+  L+ A+
Sbjct: 381 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 440

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++       D+  Y+ ++ G+   G+++ A DLF ++    + PNV T+  +IHG 
Sbjct: 441 ALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 500

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            +    ++  +L  +M +    P+    +++     +N  +L ++
Sbjct: 501 CKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK   +  A ++   M+ +G++P+VV +N L  G    ++V+ A K+FD M    
Sbjct: 286 VVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD 345

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  +Y   I+G CK   + +++ LF  +   +   +   Y+ LI GLC  GRL+ A+
Sbjct: 346 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 405

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +     + D+VTY  +   L  +  +DKA  L   +E +   P++  + T++ G 
Sbjct: 406 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGM 465

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E     +L   +  K + P+    +I++  L K
Sbjct: 466 CRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 502



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 113/235 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 146 LIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN 205

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   ++  ID LCK+  + E+  +F  +       +I  Y+ LI GLCK    +   
Sbjct: 206 CQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 265

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ DV T + ++  L  +G + +AHD+   M    V PNV+T+  L+ G 
Sbjct: 266 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
              NE    +++   M  K+ + +    + +++   K +    ++  F    RQE
Sbjct: 326 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 380



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 4/207 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C    ++ A +  +++L  G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ ++  +S LID LCK  ++  A
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    +  ++VTY+ +IHGL    +      L  +M ++ + P+V T  T++  
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 181 FIR---INEPSKVIELL-HKMKEKNVM 203
             +   + E   V++++ H+  E NV+
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVV 316



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 7/207 (3%)

Query: 14  GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
           G L+L    LS         HNT        + ++ A   F+ M        T  +   +
Sbjct: 25  GMLSLPPPFLSSS-------HNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLL 77

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
             + K  +    + L R +       D+   + +I+ LC   R++ A      + +    
Sbjct: 78  TSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQ 137

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            D  T++ +I GL  +G++ +A  LF  M      PNV+T+GTLI+G  ++   S  I L
Sbjct: 138 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRL 197

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKNE 220
           L  M++ N  P+  + S ++D L K+ 
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDR 224



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CKN+ ++ A+ L   +      PD+ I+ T+  G+    ++E A  LF  +   G+  + 
Sbjct: 431 CKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV 490

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY I I GLCK G + E+ +LF  +    C  +   Y+ +  G  ++      +EL   
Sbjct: 491 WTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEE 550

Query: 127 -LPRGVLVADVVTYSIMIHGLYNDG 150
            L RG  V DV T ++++  L +DG
Sbjct: 551 MLARGFSV-DVSTTTLLVGMLSDDG 574



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+  E+E A +L+S + SKG++P+V  +N +  GL +   +  A KLF EM ++G
Sbjct: 461 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            + +  TY +   G  +N   + ++EL   +      +D+   + L+  L   G
Sbjct: 521 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +  A  L+SEM   G  P+   +N +  G    ++  R  +L +EM   
Sbjct: 495 IMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLAR 554

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G + D  T T+ +  L  +G
Sbjct: 555 GFSVDVSTTTLLVGMLSDDG 574


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 122/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK+K I   ++L  EM   G  PDVV   TL  G  +  +   A +LF  M + G
Sbjct: 363 LIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYG 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T  + +DGLCK   + E+V L   +     +L+I  YS L+DG+C +G+L  A 
Sbjct: 423 QVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAW 482

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF SLP   L  +V TY+IMI GL   G +DKA DL ++MEEN   P+  T+   + G 
Sbjct: 483 ELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGL 542

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +   E ++ I+ L  M++K    DA+   I ++ L+ NE
Sbjct: 543 LTKKEIARSIKYLTIMRDKGFSVDAATTEITINYLSTNE 581



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +  ALNL SEM  KG++P++V +  L  GL    + +    L DEM + G
Sbjct: 223 IMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMG 282

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +T  I +D  CK G ++++  +   + +     D+  Y+ LI   C   ++  A+
Sbjct: 283 MRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAM 342

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +FH +  RG L  D+V ++ +IHG   D  ++K   L  +M +    P+V+T+ TLI G
Sbjct: 343 RVFHLMVSRGCL-PDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGG 401

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F +   P    EL   M +   +P+    ++++D L K  +
Sbjct: 402 FCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNL 442



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 1/210 (0%)

Query: 10  KEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           K    A++L   + S  GI+ D +  N +   L  +  V   F +   M + G+     T
Sbjct: 90  KHYTTAISLVKHIFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMT 149

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
            T  I+GLC  G + ++V L   +  ++  LD+  Y  LI+GLCK+G    A+E    + 
Sbjct: 150 LTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKME 209

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                 +VV YS ++ GL  DG + +A +L  +M    V PN++T+  LI G        
Sbjct: 210 ERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWK 269

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   LL +M +  +  D   ++I+VD   K
Sbjct: 270 ETGSLLDEMIKMGMRLDLQTLNILVDAFCK 299



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  A+ L   M       DV  +  L  GL +      A +   +M+   
Sbjct: 153 LINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERN 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  +DGLCK+G + E++ L   +       ++  Y+CLI GLC  GR +   
Sbjct: 213 WKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETG 272

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  D+ T +I++     +G++ +A  +   M      P+V T+ +LIH +
Sbjct: 273 SLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIY 332

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N+ ++ + + H M  +  +PD  + + ++    K++
Sbjct: 333 CLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDK 371



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR-TLRILKCELDI 101
           ++  ++ A  LF  M         + +T+ +  + +  +   ++ L +     L  E D 
Sbjct: 53  KVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGIEADT 112

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
              + +I+ LC+   +     +  ++ +  L   V+T + +I+GL   G + +A  L   
Sbjct: 113 ITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDH 172

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ME+     +V T+G LI+G  +  +    +E L KM+E+N  P+  + S ++D L K+ +
Sbjct: 173 MEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGL 232



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK   +  A++L   M    +  ++VI++ L  G+    ++  A++LF  +   
Sbjct: 432 VILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGK 491

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G+  +  TYTI I GLCK G + ++ +L   +    C  D   Y+  + GL
Sbjct: 492 GLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGL 542



 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G CK   ++ A +L   M   G  PD   +N    GL    ++ R+ K    M+  
Sbjct: 502 IMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDK 561

Query: 61  GVAADTRTYTIFIDGLCKN 79
           G + D  T  I I+ L  N
Sbjct: 562 GFSVDAATTEITINYLSTN 580


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 128/210 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK K I  A  L++EM+ +G+ PD+V +NTL  GL ++ ++  A  LF  M  +
Sbjct: 407 ILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 466

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+I +DG CK GY+ ++  LFR ++    + ++  Y+ LID +CKS  L+ A
Sbjct: 467 GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 526

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  L    L  +V  Y+ +I+GL  +G +D+A + F +MEE+   PN  ++  +I G
Sbjct: 527 RKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRG 586

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           F++  + S+ ++L+ +M+EK  + D +  +
Sbjct: 587 FLQHKDESRAVQLIGEMREKGFVADVATTA 616



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 127/254 (50%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  AL+++S M +KGI P++  +N+L  GL    +   A  + +EM    
Sbjct: 268 IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 327

Query: 62  VAADTRTYTIFIDGLCK------------------------------NGY-----IVESV 86
           +  +  T+++ I+  CK                              NGY     +VE+ 
Sbjct: 328 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEAR 387

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF  +    C+ D+ +Y+ LI+G CK+ R+  A +LF+ +    L  D+V+Y+ +I GL
Sbjct: 388 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGL 447

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++ +AHDLF +M  N   P++ T+  L+ GF +    +K   L   M+   + P+ 
Sbjct: 448 CQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNM 507

Query: 207 SIVSIVVDLLAKNE 220
            + +I++D + K+ 
Sbjct: 508 VMYNILIDAMCKSR 521



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 117/229 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN +CK   +  A  +   M   G++P+VV +++L  G     +V  A KLFD M   
Sbjct: 337 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITK 396

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y I I+G CK   I E+ +LF  +       DI +Y+ LIDGLC+ GRL  A
Sbjct: 397 GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 456

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF ++     + D+ TYSI++ G    G + KA  LF  M+   + PN++ +  LI  
Sbjct: 457 HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 516

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +     +  +L  ++  + + P+  I + +++ L K  +   +L +F
Sbjct: 517 MCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAF 565



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 115/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN + + + ++   ++ ++++  G++  +V  NTL  GL ++ +  +A +LFD+M   
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  I+GLCK G  V +  LFR +    C+ D+  YS +ID LCK  R+  A
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  ++ TY+ +I GL N  +  +A  +  +M    + PN++TF  LI+ 
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +     +   +L  M E  V P+    S +++
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMN 375



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   A+ L+ +M+++G +PDV  + T+  GL +I +   A  LF +M   G
Sbjct: 198 LINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAG 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  ID LCK+  + E++++F  ++      +I  Y+ LI GLC   R   A 
Sbjct: 258 CQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    ++ ++VT+S++I+    +G + +A  +   M E  V PNV+T+ +L++G+
Sbjct: 318 AMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGY 377

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               E  +  +L   M  K   PD    +I+++   K
Sbjct: 378 SLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCK 414



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 108/206 (52%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           +  ++L  +M   G+ PD    + L    F++ +V+  F +  ++ + G+     T+   
Sbjct: 139 DAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTL 198

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+GLCK G   ++VELF  +     + D+  Y+ +I+GLCK G    A  LF  +     
Sbjct: 199 INGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGC 258

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             DVVTYS +I  L  D ++++A D+F  M+   ++PN+ T+ +LI G    +   +   
Sbjct: 259 QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASA 318

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           +L++M   N+MP+    S+++++  K
Sbjct: 319 MLNEMMSLNIMPNIVTFSLLINIFCK 344



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 36/212 (16%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI-HQVERAFKLFDEMQRDGVAADTRT 68
           + I+ AL  ++ ML +  +P ++  N L   + ++ H  +    L  +M+  G++ DT T
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYT 159

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
             + I+                      C   +Q             R+++   +   + 
Sbjct: 160 LHMLIN----------------------CFFQLQ-------------RVDLGFSVLAKII 184

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           +  L   +VT++ +I+GL   G+  +A +LF DM      P+V T+ T+I+G  +I E  
Sbjct: 185 KLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETV 244

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               L  KM E    PD    S ++D L K+ 
Sbjct: 245 AAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDR 276


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 125/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK K I  A++L  EM+  G  PDVV   TL  G  ++ +   A +LF  M + G
Sbjct: 362 LIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T  I +DGLCK+  + E++ LF  +     +L+I  YS ++DG+C +G+L  AL
Sbjct: 422 QVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTAL 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  LP   L  +V  Y+IMI+G    G +DKA DL  +MEEN   P+  T+   + G 
Sbjct: 482 ELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGL 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +   E ++ I+ L  M++K    DA+   ++++ L+ N+
Sbjct: 542 VAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLSTNQ 580



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 2/235 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +  AL L  EM  KGIKP++V +  L  GL    + + A  L DEM + G
Sbjct: 222 VMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D ++  I +D LCK G I+++  +   + ++    D+  Y+ LID  C   +++ A 
Sbjct: 282 VMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEAT 341

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +F  +  RG L  D+V Y+ +IHG      ++KA  L  +M +    P+V+T+ TLI G
Sbjct: 342 RVFELMVSRGCL-PDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGG 400

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           F ++  P    EL   M +   +P+    +I++D L K+++   +L  F   E+ 
Sbjct: 401 FCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKS 455



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 1/212 (0%)

Query: 8   KNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           K K    A++L  EM S  GIKPD  I N +   L  +  V   F +   M + G+    
Sbjct: 87  KMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSV 146

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+TI I+GLC  G +  +VEL   +       D++ Y  LI+GLCK G+   A+     
Sbjct: 147 VTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRK 206

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +       +VV YS ++ GL  DG + +A  L L+M    + PN++T+  LI G      
Sbjct: 207 MEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGR 266

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +   LL +M +  VMPD   ++I+VD+L K
Sbjct: 267 WKEAGSLLDEMMKMGVMPDLQSLNILVDVLCK 298



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 36/258 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +I  A ++   M+  G  PDV  +N+L       +Q++ A ++F+ M   
Sbjct: 291 ILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSR 350

Query: 61  GVAADTRTYTIFIDGLCK-----------------------------------NGYIVES 85
           G   D   YT  I G CK                                    G  + +
Sbjct: 351 GCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAA 410

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ELF  +       ++Q  + ++DGLCKS  L  AL LFH++ +  L  ++V YSI++ G
Sbjct: 411 KELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDG 470

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           + + G+++ A +LF  +    +  NV  +  +I+GF +     K  +LL  M+E   MPD
Sbjct: 471 MCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPD 530

Query: 206 ASIVSIVVD-LLAKNEIS 222
           +   ++ V  L+A+ EI+
Sbjct: 531 SCTYNVFVQGLVAEREIA 548



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C   ++  A+ L   +   G + DV  +  L  GL ++ +   A     +M+  
Sbjct: 151 ILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEER 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   Y+  +DGLCK+G + E++ L   +     + ++  Y+CLI GLC  GR + A
Sbjct: 211 NWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEA 270

Query: 121 LELFHSLPR-GVL----------------------------------VADVVTYSIMIHG 145
             L   + + GV+                                  V DV TY+ +I  
Sbjct: 271 GSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDR 330

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                QMD+A  +F  M      P+++ + +LIHG+ +I   +K + LL +M +    PD
Sbjct: 331 YCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPD 390



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 36/213 (16%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAADT 66
           K K I+ ALN +  M      P V+    L   + ++     A  L  EM    G+  DT
Sbjct: 52  KLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDT 111

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
               + I+ LC    +     +  T+                        L++ LE    
Sbjct: 112 FILNVVINSLCHLKLVAFGFSVLGTM------------------------LKLGLE---- 143

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
                    VVT++I+I+GL   G + +A +L   +E+     +V T+G LI+G  ++ +
Sbjct: 144 -------PSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGK 196

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            S+ +  L KM+E+N  P+  + S V+D L K+
Sbjct: 197 TSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKD 229


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 130/221 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+CK+  I+ A  L +EM  K + PD V ++TL  G  +  + + A KL +EM+  
Sbjct: 262 ILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSY 321

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+I +DGLCK G++ E+ EL + ++  K E +I  Y+ LI G+C  G+LE A
Sbjct: 322 GLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAA 381

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF +L    +  DVVTY++MI GL   G  ++A +LF DM  +   PN  T+  +I G
Sbjct: 382 RELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQG 441

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F+R  + S    L+ +M  +    D+S   ++ DL +++EI
Sbjct: 442 FLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRDEI 482



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 122/217 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+K I  A+   SEM+++GI P+VV ++++  G   + +   A  LF +M    
Sbjct: 123 IIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERN 182

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T+ I +DGL K G I+E+  +F T+     E ++  Y+ L+DG C   +++ A 
Sbjct: 183 VMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQ 242

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ + R      V +Y+I+I G    G++D+A  L  +M   A+ P+ +T+ TL+ GF
Sbjct: 243 KLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGF 302

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   P    +LL +M+   ++PD    SIV+D L K
Sbjct: 303 CQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCK 339



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 113/222 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G  K   I  A  ++  M+ KG++P+V  +N L  G     Q++ A KLF+ M R 
Sbjct: 192 ILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRK 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A   R+Y I I G CK+G I E+  L   +       D   YS L+ G C+ GR + A
Sbjct: 252 GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L+ D++TYSI++ GL   G +D+A +L   M+E+ + PN+  +  LI G
Sbjct: 312 QKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQG 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +     EL   +  K + PD    ++++  L K  +S
Sbjct: 372 MCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLS 413



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 119/224 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   +++ A  L++ M+ KG  P V  +N L  G  +  +++ A  L  EM    
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKA 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY+  + G C++G   ++ +L   +R      D+  YS ++DGLCK G L+ A 
Sbjct: 288 LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAF 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  ++    +  ++  Y+I+I G+ N G+++ A +LF ++    + P+V+T+  +I G 
Sbjct: 348 ELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           ++    ++  EL   M     +P++   ++++    +N  + N+
Sbjct: 408 LKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNA 451



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 2/216 (0%)

Query: 1   ILINGYCKNKE--IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           ILIN +C +       A ++   M   G++P+ V  +TL  GL    ++  A KLFDEM 
Sbjct: 15  ILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMV 74

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           + G   D  TY+  I+GLCK G    +++L + +    C+ ++  YS +ID LCK   + 
Sbjct: 75  KMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLIT 134

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+E    +    +  +VVTYS ++HG  N G+ ++A  LF  M E  V P+ +TF  L+
Sbjct: 135 EAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILV 194

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            G  +     +   +   M EK V P+ +  + ++D
Sbjct: 195 DGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMD 230



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG     +I  A+ L+ EM+  G +PDV+ ++T+  GL ++     A +L  +M+  G
Sbjct: 53  LLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKG 112

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  ID LCK+  I E++E    +       ++  YS ++ G C  GR   A 
Sbjct: 113 CKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEAT 172

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    ++ D VT++I++ GL  +G + +A  +F  M E  V PNV T+  L+ G+
Sbjct: 173 SLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGY 232

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              ++  +  +L + M  K   P     +I++
Sbjct: 233 CSQSQMDEAQKLFNIMVRKGCAPSVRSYNILI 264



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 4/195 (2%)

Query: 27  IKPDVVIHNTLFIGLF---EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
           I+PDV    T+ I  F          AF +   M + G+  +  T++  ++GL     I+
Sbjct: 6   IRPDVYTL-TILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKII 64

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           ++V+LF  +  +  E D+  YS +I+GLCK G   +A++L   +       +VV YS +I
Sbjct: 65  DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L  D  + +A +   +M    ++PNV+T+ +++HGF  +   ++   L  +M E+NVM
Sbjct: 125 DSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVM 184

Query: 204 PDASIVSIVVDLLAK 218
           PD    +I+VD L+K
Sbjct: 185 PDTVTFNILVDGLSK 199


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 127/210 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK   I+ A  LY+EM+ +G+ PD V +NTL  GL ++ ++  A  LF  M ++
Sbjct: 34  ILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKN 93

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+I +DGLCK GY+ ++  LFR ++    + D+  Y+ L+D +CKSG L+ A
Sbjct: 94  GNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDA 153

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    L  +V  Y+ +I+GL  +G +D+A + F +MEE+   P+  ++  +I G
Sbjct: 154 RELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRG 213

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           F++  + S+ + L+ +M+++  + D    +
Sbjct: 214 FLQHKDESRAVHLIGEMRDRGFIADVGTTT 243



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 111/209 (53%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           GY    E+  A  L+  M++KG KPDV  +N L  G  +  ++++A +L++EM   G+  
Sbjct: 3   GYSLCMEVVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTP 62

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D  TY   I GLC+ G + E+ +LF+ +       D+ AYS L+DGLCK G L  A  LF
Sbjct: 63  DKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLF 122

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
            ++    L  D+V Y+I++  +   G +  A +LF ++    + PNV  + T+I+G  + 
Sbjct: 123 RAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKE 182

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               + +E    M+E    PD    ++++
Sbjct: 183 GLLDEALEAFRNMEEDGCPPDEFSYNVII 211



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 93/184 (50%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +V  A KLFD M   G   D   Y I I+G CK   I ++ +L+  + +     D   Y+
Sbjct: 9   EVVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYN 68

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI GLC+ GRL  A +LF ++ +   + D+  YSI++ GL   G + KA  LF  M+ +
Sbjct: 69  TLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSS 128

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           ++ P+++ +  L+    +        EL  ++  K + P+  I + +++ L K  +   +
Sbjct: 129 SLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEA 188

Query: 226 LPSF 229
           L +F
Sbjct: 189 LEAF 192


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 122/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK+K I  A++L  EM   G  PDV    TL  G  +  +   A +LF  M + G
Sbjct: 363 LIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYG 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T  + +DGLCK   + E+V L + +     +L+I  YS L+DG+C +G+L  A 
Sbjct: 423 QVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAW 482

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF SLP   L  +V  Y+IMI GL   G +DKA DL ++MEEN   PN  T+   + G 
Sbjct: 483 ELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGL 542

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +   E ++ I+ L  M++K    DA+    +++ L+ NE
Sbjct: 543 LTKKEIARSIKYLTIMRDKGFSVDAATTEFIINYLSTNE 581



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 113/220 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +  ALNL SEM  KG++P++V +  L  GL    + + A  L DEM + G
Sbjct: 223 IMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMG 282

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +   I +D  CK G ++++  +   + +     D+  Y+ LI   C   ++  A+
Sbjct: 283 MRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAM 342

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH +     + D+V ++ +IHG   D  ++KA  L  +M +    P+V T+ TLI GF
Sbjct: 343 RVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGF 402

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +   P    EL   M +   +P+    ++++D L K  +
Sbjct: 403 CQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENL 442



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L+    + K    A++L   M S  GI+ D +  N +   L  +  V   F +   M +
Sbjct: 81  LLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFK 140

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+     T T  I+GLC  G + ++V L   +  +   LD+  Y  LI+GLCK+G    
Sbjct: 141 LGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLA 200

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+     +       +VV YS ++ GL  DG + +A +L  +M    V PN++T+  LI 
Sbjct: 201 AVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQ 260

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G        +   LL +M +  + PD  +++I+VD   K
Sbjct: 261 GLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCK 299



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  A+ L   M       DV  +  L  GL +      A     +M+   
Sbjct: 153 LINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERN 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  +DGLCK+G + E++ L   +       ++  Y+CLI GLC  GR + A 
Sbjct: 213 WKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAG 272

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  D+   +I++     +G++ +A  +   M      P+V T+ +LIH +
Sbjct: 273 SLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIY 332

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N+ ++ + + H M  +  +PD  + + ++    K++
Sbjct: 333 CLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDK 371



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 95/203 (46%), Gaps = 3/203 (1%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           +E  S G +  + + N  + G  ++  ++ A  LF  M R       + +T+ +  + + 
Sbjct: 32  TESHSNGTQLLISMRNLCWSG--KLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRL 89

Query: 80  GYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138
            +   ++ L + +   L  E D    + +I+ LC+   +     +  ++ +  L   V+T
Sbjct: 90  KHYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMT 149

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
            + +I+GL   G + +A  L   ME+     +V T+G LI+G  +  +    +  L KM+
Sbjct: 150 LTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKME 209

Query: 199 EKNVMPDASIVSIVVDLLAKNEI 221
           E+N  P+  + S ++D L K+ +
Sbjct: 210 ERNWKPNVVVYSTIMDGLCKDGL 232



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 56/111 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK   +  A++L   M    +  ++VI++ L  G+    ++  A++LF  +   
Sbjct: 432 VILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGK 491

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G+  +   YTI I GLCK G + ++ +L   +    C  +   Y+  + GL
Sbjct: 492 GLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGL 542


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 128/218 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A+ L+ EM  + + P+ V +NTL  GL  + +++ A  LF EM   G
Sbjct: 296 LINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY    D LCKN ++ +++ L + +     + DIQ Y+ ++DG+C++G LE A 
Sbjct: 356 QIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDAR 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  +V TY+IMIHGL   G + +A  LF +M +N  +PN  T+  +  GF
Sbjct: 416 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R NE  + IELL +M  +    D S  +++V +L+ +
Sbjct: 476 LRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDD 513



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK++++  A N++SEM++KGI P++V +N+L  GL ++ + +    L +EM    
Sbjct: 156 LINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSK 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T    +D LCK G + E+ ++   +     E ++  Y+ L+DG C    +++A+
Sbjct: 216 IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAV 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++     VA+V++Y+ +I+G      +DKA  LF +M    + PN +T+ TLIHG 
Sbjct: 276 KVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M  +  +PD      + D L KN 
Sbjct: 336 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNR 374



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 102/170 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+ + ++ A+ L  +M  +G+  D V +NTL  GL  + +++ A  LF EM   
Sbjct: 783 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 842

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I +D LCKN ++ E++ L + +     + DI  Y+  IDG+C++G LE A
Sbjct: 843 GQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA 902

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            +LF +L    L  DV TY+IMIHGL   G +D+A+ LF  M+EN +  N
Sbjct: 903 RDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSN 952



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 112/206 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C   E++ A+ ++  M+ KG  P+V  +N L  G  +I ++++A  L ++M   G
Sbjct: 749 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 808

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ADT TY   I GLC  G +  ++ LF  +       D+  Y  L+D LCK+  L  A+
Sbjct: 809 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 868

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++    L AD++ Y+I I G+   G+++ A DLF ++    + P+V T+  +IHG 
Sbjct: 869 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 928

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
            +     +  +L  KM E ++  +++
Sbjct: 929 CKRGLLDEANKLFRKMDENDIWSNST 954



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 116/225 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C   E++ A+ ++  M+ K    +V+ +NTL  G  +I  V++A  LF+EM R  
Sbjct: 261 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   I GLC  G + +++ LF  +       D+  Y  L D LCK+  L+ A+
Sbjct: 321 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++       D+  Y+ ++ G+   G+++ A DLF ++    + PNV T+  +IHG 
Sbjct: 381 ALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            +    ++  +L  +M +    P+    +++     +N  +L ++
Sbjct: 441 CKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 485



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 13/219 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK             M++KGI PD+  +N+L   L  + + +    L +EM    
Sbjct: 657 LMNGLCK-------------MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 703

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++  +D LCK G I  + ++   +     E D+  Y+ L+DG C    ++ A+
Sbjct: 704 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV 763

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++     V +V +Y+I+I+G     +MDKA  L   M    +  + +T+ TLIHG 
Sbjct: 764 KVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL 823

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M     +PD     I++D L KN 
Sbjct: 824 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNH 862



 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   E +    L +EM++  I P+VV+ +T+   L +   +  A  + D M + G
Sbjct: 679 LIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRG 738

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TYT  +DG C    + E+V++F T+    C  ++++Y+ LI+G C+  R++ A+
Sbjct: 739 VEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAM 798

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L+AD VTY+ +IHGL + G++  A  LF +M  +   P+++T+  L+   
Sbjct: 799 GLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +  ++ + LL  ++  N+  D  + +I +D + +
Sbjct: 859 CKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 895



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK   I  A ++   M+ +G++PDVV +  L  G     +++ A K+FD M   G
Sbjct: 714 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 773

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + R+Y I I+G C+   + +++ L   + +     D   Y+ LI GLC  GRL+ A+
Sbjct: 774 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 833

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +     + D+VTY I++  L  +  + +A  L   +E + +  +++ +   I G 
Sbjct: 834 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGM 893

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E     +L   +  K + PD    +I++  L K
Sbjct: 894 CRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCK 930



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK   +  A ++   M+ +G++P+VV +N L  G    ++V+ A K+FD M    
Sbjct: 226 VVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  +Y   I+G CK   + +++ LF  +   +   +   Y+ LI GLC  GRL+ A+
Sbjct: 286 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +     + D+VTY  +   L  +  +DKA  L   +E +   P++  + T++ G 
Sbjct: 346 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGM 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E     +L   +  K + P+    +I++  L K
Sbjct: 406 CRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 442



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 111/236 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C    ++ A +  +++L  G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 85  IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK+  + E+  +F  +       +I  Y+ LI GLCK    +  
Sbjct: 145 GFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHV 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    ++ DV T + ++  L  +G + +AHD+   M    V PNV+T+  L+ G
Sbjct: 205 TTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               NE    +++   M  K+ + +    + +++   K +    ++  F    RQE
Sbjct: 265 HCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 320



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L  +M S GI PDV     +   L  +++V+ AF    ++ + G
Sbjct: 51  LLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I GLC  G I E++ LF  +     + ++  Y  LI+GLCK  ++  A 
Sbjct: 111 HQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAF 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    +  ++VTY+ +IHGL    +      L  +M ++ + P+V T  T++   
Sbjct: 171 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 230

Query: 182 IR---INEPSKVIELL-HKMKEKNVM 203
            +   + E   V++++ H+  E NV+
Sbjct: 231 CKEGMVAEAHDVVDMMIHRGVEPNVV 256



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 11/224 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+  E+E A +L+S + SKG++P+V  +N +  GL +   +  A KLF EM ++G
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI-----DGLCKSGR 116
            + +  TY +   G  +N   + ++EL   +      +D+   + L+     DGL +S +
Sbjct: 461 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVK 520

Query: 117 LEIALELFHSLPRGVLVADV------VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             +      S P G  +  +       +++ +     +   +D A   F  M      P+
Sbjct: 521 QILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPS 580

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + F  L+    ++   S V+ L  +M    + PD   ++I+++
Sbjct: 581 TVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN 624



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CKN+ ++ A+ L   +      PD+ I+ T+  G+    ++E A  LF  +   G+  + 
Sbjct: 371 CKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV 430

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY I I GLCK G + E+ +LF  +    C  +   Y+ +  G  ++      +EL   
Sbjct: 431 WTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEE 490

Query: 127 -LPRGVLVADVVTYSIMIHGLYNDG 150
            L RG  V DV T ++++  L +DG
Sbjct: 491 MLARGFSV-DVSTTTLLVGMLSDDG 514



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 35/220 (15%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           HNT        + ++ A   F+ M        T  +   +  + K  +    + L R + 
Sbjct: 13  HNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD 72

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
                 D+   + +I+ LC   R++ A      + +     D  T++ +I GL  +G++ 
Sbjct: 73  SFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIG 132

Query: 154 KAHDLFLDMEENAVAPNVITFGT-----------------------------------LI 178
           +A  LF  M      PNV+T+GT                                   LI
Sbjct: 133 EALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI 192

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           HG  ++ E   V  L+++M +  +MPD   ++ VVD L K
Sbjct: 193 HGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 232



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 22/225 (9%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           ++ AL+ ++ ML     P  V    L   + ++        L  +M   G+  D  T  I
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 621

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF------H 125
            I+  C    +  +  +   L  L  + D+  Y  L++GLCK     I+ ++F      H
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIH 681

Query: 126 SLP----------------RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           +L                    ++ +VV +S ++  L  +G +  AHD+   M +  V P
Sbjct: 682 ALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 741

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +V+T+  L+ G    +E  + +++   M  K  +P+    +I+++
Sbjct: 742 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILIN 786



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 105/286 (36%), Gaps = 68/286 (23%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +  A  L+SEM   G  P+   +N +  G    ++  R  +L +EM   
Sbjct: 435 IMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLAR 494

Query: 61  GVAADTRTYTIFI-----DG--------LCK-------NGYIVESV-ELFRTLRILKCEL 99
           G + D  T T+ +     DG        LCK       +G  + S+  LF +        
Sbjct: 495 GFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHS 554

Query: 100 DIQAYSCLIDGLCKSGRL-------------------------EIALELFHSLPRGVLVA 134
               ++ L D L    R+                            L L   +    +  
Sbjct: 555 RSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPP 614

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT------------------ 176
           DV T +I+I+   +  ++  A  +   + +    P+V+T+GT                  
Sbjct: 615 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIF 674

Query: 177 ----LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               LIH    + E   V  LL++M    +MP+  + S VVD L K
Sbjct: 675 TYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 720


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 129/215 (60%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + L+ EM  +G+  + V +NTL  GLF+    + A K+F +M  DG
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLCK G + +++ +F  L+  K E DI  Y+ +I+G+CK+G++E   
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +V+ Y+ MI G    G  ++A  LF +M+E+   PN  T+ TLI   
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS +S+V+++L
Sbjct: 581 LRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 13/237 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M     +P+ V  NTL  GLF  ++   A  L D M   G
Sbjct: 156 LLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G I  ++ L + +   K E D+  Y+ +ID LC    +  AL
Sbjct: 216 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTY+ +I  L N G+   A  L  DM E  + PNV+TF  LI  F
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           ++  +  +  +L  +M ++++ PD    S +++              F +H+R +E 
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 379



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 123/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-----------VER- 49
           +I+  C  K +  ALNL++EM +KGI+P+VV +N+L   L    +           +ER 
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320

Query: 50  -----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                  A KL+DEM +  +  D  TY+  I+G C +  + E+ 
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  +    C  ++  Y+ LI G CK+ R+E  +ELF  + +  LV + VTY+ +I GL
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G  D A  +F  M  + V P++IT+  L+ G  +  +  K + +   +++  + PD 
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500

Query: 207 SIVSIVVDLLAK 218
              +I+++ + K
Sbjct: 501 YTYNIMIEGMCK 512



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL +  +M+  G +PD+V  ++L  G     ++  A  L D+M   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T T+   I GL  +    E+V L   +    C+ D+  Y  +++GLCK G +++A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +G + ADVV Y+ +I  L N   ++ A +LF +M+   + PNV+T+ +LI  
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + P+    S ++D   K
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 337



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 102/202 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  +I+ AL+L  +M    I+ DVVI+ T+   L     V  A  LF EM   G
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I  LC  G   ++  L   +   K   ++  +S LID   K G+L  A 
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + +  +  D+ TYS +I+G     ++D+A  +F  M      PNV+T+ TLI GF
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +     + +EL  +M ++ ++
Sbjct: 406 CKAKRVEEGMELFREMSQRGLV 427



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G   + +   A+ L   M+++G +PD+  + T+  GL +   ++ A  L  +M++  
Sbjct: 191 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 250

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD   YT  ID LC    + +++ LF  +       ++  Y+ LI  LC  GR   A 
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +VVT+S +I     +G++ +A  L+ +M + ++ P++ T+ +LI+GF
Sbjct: 311 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370

Query: 182 I---RINEPSKVIELLHKMKEKNVMPD 205
               R++E   + EL   M  K+  P+
Sbjct: 371 CMHDRLDEAKHMFEL---MISKDCFPN 394



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 107/220 (48%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A++L+ EM+     P +V  N L   + ++++ +    L + MQ   ++ D  +Y 
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   +  ++ +   +  L  E DI   S L++G C   R+  A+ L   +   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               + VT++ +IHGL+   +  +A  L   M      P++ T+GT+++G  +  +    
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           + LL KM++  +  D  I + ++D L   +   ++L  FT
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT 279



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++E AL ++  +    ++PD+  +N +  G+ +  +VE  + LF  +   
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   YT  I G C+ G   E+  LFR ++      +   Y+ LI    + G    +
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 589

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
            EL   +     V D  T S++I+ L+ DG+++K++
Sbjct: 590 AELIKEMRSCGFVGDASTISMVINMLH-DGRLEKSY 624


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 129/215 (60%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + L+ EM  +G+  + V +NTL  GLF+    + A K+F +M  DG
Sbjct: 385 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLCK G + +++ +F  L+  K E DI  Y+ +I+G+CK+G++E   
Sbjct: 445 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 504

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +V+ Y+ MI G    G  ++A  LF +M+E+   PN  T+ TLI   
Sbjct: 505 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 564

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS +S+V+++L
Sbjct: 565 LRDGDKAASAELIKEMRSCGFVGDASTISMVINML 599



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 13/237 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M     +P+ V  NTL  GLF  ++   A  L D M   G
Sbjct: 140 LLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG 199

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G I  ++ L + +   K E D+  Y+ +ID LC    +  AL
Sbjct: 200 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 259

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTY+ +I  L N G+   A  L  DM E  + PNV+TF  LI  F
Sbjct: 260 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 319

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           ++  +  +  +L  +M ++++ PD    S +++              F +H+R +E 
Sbjct: 320 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 363



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 123/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-----------VER- 49
           +I+  C  K +  ALNL++EM +KGI+P+VV +N+L   L    +           +ER 
Sbjct: 245 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 304

Query: 50  -----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                  A KL+DEM +  +  D  TY+  I+G C +  + E+ 
Sbjct: 305 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 364

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  +    C  ++  Y+ LI G CK+ R+E  +ELF  + +  LV + VTY+ +I GL
Sbjct: 365 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 424

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G  D A  +F  M  + V P++IT+  L+ G  +  +  K + +   +++  + PD 
Sbjct: 425 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 484

Query: 207 SIVSIVVDLLAK 218
              +I+++ + K
Sbjct: 485 YTYNIMIEGMCK 496



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL +  +M+  G +PD+V  ++L  G     ++  A  L D+M   
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 163

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T T+   I GL  +    E+V L   +    C+ D+  Y  +++GLCK G +++A
Sbjct: 164 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 223

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +G + ADVV Y+ +I  L N   ++ A +LF +M+   + PNV+T+ +LI  
Sbjct: 224 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + P+    S ++D   K
Sbjct: 284 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 321



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 102/202 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  +I+ AL+L  +M    I+ DVVI+ T+   L     V  A  LF EM   G
Sbjct: 210 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 269

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I  LC  G   ++  L   +   K   ++  +S LID   K G+L  A 
Sbjct: 270 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 329

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + +  +  D+ TYS +I+G     ++D+A  +F  M      PNV+T+ TLI GF
Sbjct: 330 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 389

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +     + +EL  +M ++ ++
Sbjct: 390 CKAKRVEEGMELFREMSQRGLV 411



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G   + +   A+ L   M+++G +PD+  + T+  GL +   ++ A  L  +M++  
Sbjct: 175 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 234

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD   YT  ID LC    + +++ LF  +       ++  Y+ LI  LC  GR   A 
Sbjct: 235 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 294

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +VVT+S +I     +G++ +A  L+ +M + ++ P++ T+ +LI+GF
Sbjct: 295 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 354

Query: 182 I---RINEPSKVIELLHKMKEKNVMPD 205
               R++E   + EL   M  K+  P+
Sbjct: 355 CMHDRLDEAKHMFEL---MISKDCFPN 378



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 107/220 (48%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A++L+ EM+     P +V  N L   + ++++ +    L + MQ   ++ D  +Y 
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 103

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   +  ++ +   +  L  E DI   S L++G C   R+  A+ L   +   
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 163

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               + VT++ +IHGL+   +  +A  L   M      P++ T+GT+++G  +  +    
Sbjct: 164 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 223

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           + LL KM++  +  D  I + ++D L   +   ++L  FT
Sbjct: 224 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT 263



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++E AL ++  +    ++PD+  +N +  G+ +  +VE  + LF  +   
Sbjct: 454 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 513

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   YT  I G C+ G   E+  LFR ++      +   Y+ LI    + G    +
Sbjct: 514 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 573

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
            EL   +     V D  T S++I+ L+ DG+++K++
Sbjct: 574 AELIKEMRSCGFVGDASTISMVINMLH-DGRLEKSY 608


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 134/229 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGY + K+I+ A+ +  E+  KG+KP +V  N L  GLFE+ + + A   FDEM   
Sbjct: 358 ILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSA 417

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   + G  KNG + E++  F  L   + + +IQ Y+ +IDGLCK+G+L+ A
Sbjct: 418 GHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKA 477

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  LP   L  DV+TY+ MI G   +G +D+A D+   ME+N    +  T+  ++ G
Sbjct: 478 HATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRG 537

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           F+R N+ S++   L ++  K+   +A+ V +++D++A++   LN +P F
Sbjct: 538 FLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAEDPSLLNMIPEF 586



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 121/237 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ +CK+  ++GA +L +EM  K I PD+  ++TL   L ++ Q E    LF EM   
Sbjct: 218 IVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHL 277

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+   IDGLCK G + ++ E+ R +     + D+  Y+ +IDG    G+++ A
Sbjct: 278 NIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRA 337

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F S+    +  ++++Y+I+I+G     ++D+A  +  ++ +  + P+++T   L+HG
Sbjct: 338 REIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHG 397

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
              +           +M     +PD      ++    KN +   ++  F   ER+ E
Sbjct: 398 LFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE 454



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  C     +   ++ +    KGI  + VI NTL  GLF  ++V+ A  LF ++ R+
Sbjct: 112 IVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRE 171

Query: 61  GVAADTRT-YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +       Y   ++GLCK G+  ++ +L R +     + +   YS +ID  CK G L+ 
Sbjct: 172 NICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDG 231

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L + + +  +  D+ TYS +I  L    Q +    LFL+M    + PNV TF ++I 
Sbjct: 232 ATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVID 291

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  +  +     E++  M EK V PD    ++++D
Sbjct: 292 GLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIID 326



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 114/216 (52%), Gaps = 10/216 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK    + A +L   M     KP+  I++ +     +   ++ A  L +EM++  
Sbjct: 184 VMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKS 243

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC----LIDGLCKSGRL 117
           +  D  TY+  ID LCK    +   E  RTL +    L+I    C    +IDGLCK G++
Sbjct: 244 IPPDIFTYSTLIDALCK----LSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKV 299

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           E A E+   +    +  DV+TY+++I G    GQ+D+A ++F  M   ++ PN+I++  L
Sbjct: 300 EDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNIL 359

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           I+G+ R  +  + +++  ++ +K + P  SIV+  V
Sbjct: 360 INGYARQKKIDEAMQVCREISQKGLKP--SIVTCNV 393



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G     +++ A++L+ +++ + I +P+ V++ T+  GL +    ++AF L   M++ 
Sbjct: 148 LLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQG 207

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T  Y+I ID  CK+G +  +  L   ++      DI  YS LID LCK  + E  
Sbjct: 208 STKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENV 267

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  +V T++ +I GL  +G+++ A ++   M E  V P+VIT+  +I G
Sbjct: 268 RTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDG 327

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +    +  +  E+   M  K++ P+    +I+++  A+ +
Sbjct: 328 YGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQK 367


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 129/218 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + I+ A+ L+ EM  + + P++V +NTL  GL  + ++  A  LF EM   G
Sbjct: 360 LINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASG 419

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I +D LCK  ++ +++ + + +       DIQ+Y+ +IDG+C+ G LE A 
Sbjct: 420 QIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAG 479

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    L  DV TY+IMI+GL   G + +A  LF +M  +  +P+  T+  +  GF
Sbjct: 480 DLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGF 539

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R NE    I+LL +M  +    DAS ++++V++L+ +
Sbjct: 540 LRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDD 577



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 115/213 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K++++  ALN++SEM++KGI P+V  +N++  GL +  + +    L +EM    +  +  
Sbjct: 226 KDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVV 285

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            +T  +D LCK G +  + ++   +     E D+  Y+ L+DG C    ++ A ++F ++
Sbjct: 286 IFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTM 345

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R     +V++YS +I+G     ++DKA  LF +M +  + PN++T+ TLIHG   +   
Sbjct: 346 VRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRL 405

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              I L H+M     +PD     I++D L K  
Sbjct: 406 RDAIALFHEMVASGQIPDLVTYRILLDYLCKTR 438



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  E +    L +EM+   I P+VVI  TL   L +   V  A  + D M + G
Sbjct: 255 IIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRG 314

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TYT  +DG C    + E+ ++F T+    C  ++ +YS LI+G CK  R++ A+
Sbjct: 315 VEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAM 374

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  LV ++VTY+ +IHGL + G++  A  LF +M  +   P+++T+  L+   
Sbjct: 375 YLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYL 434

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + +L  ++  N+ PD    +IV+D + +
Sbjct: 435 CKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCR 471



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 113/216 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK   +  A ++   M+ +G++PDVV +  L  G     +++ A K+FD M R G
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  +Y+  I+G CK   I +++ LF  +   +   +I  Y+ LI GLC  GRL  A+
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAI 409

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +     + D+VTY I++  L     +D+A  +   +E + +AP++ ++  +I G 
Sbjct: 410 ALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGM 469

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            R+ E     +L   +  K + PD    +I+++ L 
Sbjct: 470 CRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLC 505



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 110/209 (52%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K     L+L  +M S GI  DV     +      +++V+  F +  ++ + G   DT T+
Sbjct: 88  KHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATF 147

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           T  I GLC  G I E++ LF  +     + +   Y  LI GLCK G    A+ L  S+ +
Sbjct: 148 TTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQ 207

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                +V+TY+ +I  L+ D Q+++A ++F +M    ++PNV T+ ++IHG  + +E   
Sbjct: 208 KNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKH 267

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V  L+++M +  +MP+  I + +VD L K
Sbjct: 268 VATLMNEMVDSKIMPNVVIFTTLVDALCK 296



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 105/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C    ++   ++ +++   G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 114 IVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGE 173

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I GLCK G    ++ L R++    CE ++  Y+ +ID L K  ++  A
Sbjct: 174 GFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    +  +V TY+ +IHGL    +      L  +M ++ + PNV+ F TL+  
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDA 293

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    +   +++  M ++ V PD    + ++D
Sbjct: 294 LCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMD 327



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 35/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+ V + TL  GL ++     A +L   M +  
Sbjct: 150 LIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKN 209

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI------------- 108
              +  TY   ID L K+  + E++ +F  +       ++  Y+ +I             
Sbjct: 210 CEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVA 269

Query: 109 ----------------------DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                 D LCK G + IA ++   + +  +  DVVTY+ ++ G 
Sbjct: 270 TLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGH 329

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               +MD+A  +F  M     APNVI++ TLI+G+ +I    K + L  +M ++ ++P+
Sbjct: 330 CLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPN 388



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK + ++ A+ +   +    + PD+  +N +  G+  + ++E A  LF  +   
Sbjct: 429 ILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSK 488

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TYTI I+GLC  G + E+ +LFR +    C  D   Y+ +  G  ++     A
Sbjct: 489 GLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSA 548

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      AD  T ++++  L +DG
Sbjct: 549 IQLLQEMLGRGFSADASTITLIVEMLSDDG 578



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 59/121 (48%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D+   + +I+  C   R++    +   + +     D  T++ +I GL  +G++ +A  LF
Sbjct: 108 DVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLF 167

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M      PN +T+GTLIHG  ++      I LL  M +KN  P+    + ++D L K+
Sbjct: 168 DKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKD 227

Query: 220 E 220
            
Sbjct: 228 R 228



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G C+  E+E A +L+S + SKG+ PDV  +  +  GL     +  A KLF EM  D
Sbjct: 464 IVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTD 523

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY +   G  +N   + +++L + +       D    + +++ L   G  +  
Sbjct: 524 GCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSV 583

Query: 121 LELFH 125
            ++ H
Sbjct: 584 KQILH 588


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 129/218 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + IE A+ L+ EM  K + P+ V ++TL  GL  + +++ A  LF EM   G
Sbjct: 345 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 404

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y I +D LCKN  + E++ L + +     + DIQ Y+ +IDG+C++G LE A 
Sbjct: 405 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 464

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  +V TY+IMI+GL   G + +A  LF +M+    +PN  T+  +  GF
Sbjct: 465 DLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGF 524

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R NE  + I+LL +M  +    D S  +++V++L+ +
Sbjct: 525 LRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDD 562



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 117/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+SEM+ +GI P +  +N+L   L  + + +    L +EM    
Sbjct: 205 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++  +D LCK G ++E+ ++   +     E ++  Y+ L+DG C    ++ A+
Sbjct: 265 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DVV+YS +I+G     +++KA  LF +M    + PN +T+ TL+HG 
Sbjct: 325 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M  +  +PD     I++D L KN 
Sbjct: 385 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNR 423



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K     L+L  +M S GI P++   N L      + ++  AF +  ++ + G   +  
Sbjct: 71  KMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIA 130

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I GLC  G I E + LF  +     + ++  Y  LI+GLCK G    A+ L  S+
Sbjct: 131 TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM 190

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +G    DVV Y+ +I  L  D Q+ +A +LF +M    ++P++ T+ +LIH    + E 
Sbjct: 191 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 250

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             V  LL++M    +MP+  I S VVD L K
Sbjct: 251 KHVTALLNEMVNSKIMPNVVIFSTVVDALCK 281



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C  + +  A ++ +++L  G +P++   NTL  GL    ++     LFD+M  +
Sbjct: 99  ILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE 158

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ D+  Y+ +ID LCK  ++  A
Sbjct: 159 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +   + TY+ +IH L N  +      L  +M  + + PNV+ F T++  
Sbjct: 219 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 278

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +  +++  M ++ V P+    + ++D
Sbjct: 279 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 312



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I   L+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 135 LIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  ID LCK+  + ++  LF  +        I  Y+ LI  LC     +   
Sbjct: 195 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVT 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ +VV +S ++  L  +G++ +AHD+   M +  V PNV+T+  L+ G 
Sbjct: 255 ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +E  + +++   M  K   PD    S +++   K
Sbjct: 315 CLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCK 351



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 81/187 (43%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           HNT        + ++ A   F+ M           +T  +  + K  +    + L   + 
Sbjct: 27  HNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD 86

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
                 +I   + LI+  C   RL  A  +   + +     ++ T++ +I GL  +G++ 
Sbjct: 87  SFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIG 146

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +   LF  M      PNV+T+GTLI+G  ++   S  I LL  M++ N  PD  + + ++
Sbjct: 147 EVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSII 206

Query: 214 DLLAKNE 220
           D L K+ 
Sbjct: 207 DSLCKDR 213



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 75/150 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN+ ++ A+ L   +    + PD+ I+  +  G+    ++E A  LF  +   
Sbjct: 414 ILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSK 473

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYTI I+GLC+ G + E+ +LF  ++      +   Y+ +  G  ++      
Sbjct: 474 GLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRG 533

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      ADV T ++++  L +DG
Sbjct: 534 IQLLQEMLARGFSADVSTSTVLVEMLSDDG 563


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 128/216 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + IE A+ L+ EM  K + P+ V ++TL  GL  + +++ A  LF EM   G
Sbjct: 354 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y I +D LCKN  + E++ L + +     + DIQ Y+ +IDG+C++G LE A 
Sbjct: 414 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  +V TY+IMI+GL   G + +A  LF +M+    +PN  T+  +  GF
Sbjct: 474 DLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGF 533

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +R NE  + I+LL +M  +    D S  +++V++L+
Sbjct: 534 LRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLS 569



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 117/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+SEM+ +GI P +  +N+L   L  + + +    L +EM    
Sbjct: 214 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 273

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++  +D LCK G ++E+ ++   +     E ++  Y+ L+DG C    ++ A+
Sbjct: 274 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 333

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DVV+YS +I+G     +++KA  LF +M    + PN +T+ TL+HG 
Sbjct: 334 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 393

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M  +  +PD     I++D L KN 
Sbjct: 394 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNR 432



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K     L+L  +M S GI P++   N L      + ++  AF +  ++ + G   +  
Sbjct: 80  KMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIA 139

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I GLC  G I E + LF  +     + ++  Y  LI+GLCK G    A+ L  S+
Sbjct: 140 TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM 199

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +G    DVV Y+ +I  L  D Q+ +A +LF +M    ++P++ T+ +LIH    + E 
Sbjct: 200 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 259

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             V  LL++M    +MP+  I S VVD L K
Sbjct: 260 KHVTALLNEMVNSKIMPNVVIFSTVVDALCK 290



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C  + +  A ++ +++L  G +P++   NTL  GL    ++     LFD+M  +
Sbjct: 108 ILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE 167

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ D+  Y+ +ID LCK  ++  A
Sbjct: 168 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 227

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +   + TY+ +IH L N  +      L  +M  + + PNV+ F T++  
Sbjct: 228 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 287

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +  +++  M ++ V P+    + ++D
Sbjct: 288 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 321



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I   L+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 144 LIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN 203

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  ID LCK+  + ++  LF  +        I  Y+ LI  LC     +   
Sbjct: 204 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVT 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ +VV +S ++  L  +G++ +AHD+   M +  V PNV+T+  L+ G 
Sbjct: 264 ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +E  + +++   M  K   PD    S +++   K
Sbjct: 324 CLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCK 360



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 75/150 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN+ ++ A+ L   +    + PD+ I+  +  G+    ++E A  LF  +   
Sbjct: 423 ILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSK 482

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYTI I+GLC+ G + E+ +LF  ++      +   Y+ +  G  ++      
Sbjct: 483 GLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRG 542

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      ADV T ++++  L +DG
Sbjct: 543 IQLLQEMLARGFSADVSTSTVLVEMLSDDG 572



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 81/187 (43%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           HNT        + ++ A   F+ M           +T  +  + K  +    + L   + 
Sbjct: 36  HNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD 95

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
                 +I   + LI+  C   RL  A  +   + +     ++ T++ +I GL  +G++ 
Sbjct: 96  SFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIG 155

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +   LF  M      PNV+T+GTLI+G  ++   S  I LL  M++ N  PD  + + ++
Sbjct: 156 EVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSII 215

Query: 214 DLLAKNE 220
           D L K+ 
Sbjct: 216 DSLCKDR 222


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 133/219 (60%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + I+ A+ L+ EM  + + P+ + ++TL  GL  + +++ A  LF+EM   G
Sbjct: 307 LINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACG 366

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+I +D LCKN  + E++ L + +     + D+Q Y+  IDG+C++G LE A 
Sbjct: 367 QIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAAR 426

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +LF +L PRG L  DV T++IMI GL   G +D+A  LF +M+EN    N  T+ T+  G
Sbjct: 427 DLFSNLAPRG-LQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQG 485

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ N+ S+ I+LL +M  +    D S  +++V +L+ +
Sbjct: 486 LLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDD 524



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 122/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK++++  ALNL+SEM++KGI PD+  +N+L   L  + + +    L +EM +  
Sbjct: 167 LMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSK 226

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +  I +D LCK G + E+ ++   +     E D+  Y+ L+DG C    ++ A+
Sbjct: 227 IMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAV 286

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + R   V +VV+Y+ +I+G     ++DKA  LF +M    + PN +T+ TLIHG 
Sbjct: 287 KVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGL 346

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +      I L ++M     +P+    SI++D L KN
Sbjct: 347 CHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKN 384



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 35/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C    ++ AL++ +++L  G +PD     TL  GL  + ++  A  +FD+M  +
Sbjct: 96  IVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE 155

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI------------ 108
           G   +  TY   ++GLCK+  + E++ LF  +       DI  Y+ LI            
Sbjct: 156 GFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHV 215

Query: 109 -----------------------DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                  D LCK G++  A ++   + +G +  DVVTY+ ++ G
Sbjct: 216 TTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDG 275

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                +MD+A  +F  M  N    NV+++ TLI+G+ +I    K + L  +M  + ++P+
Sbjct: 276 HCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPN 335

Query: 206 ASIVSIVV 213
               S ++
Sbjct: 336 TMTYSTLI 343



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK  ++  A ++   M+  G++PDVV +  L  G     +++ A K+FD M R+
Sbjct: 236 IVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRN 295

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+G CK   I +++ LF  +   +   +   YS LI GLC  GRL+ A
Sbjct: 296 GCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDA 355

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+ +     + ++VTYSI++  L  + ++ +A  L   +E + + P+V  +   I G
Sbjct: 356 IALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDG 415

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R  +     +L   +  + + PD    +I++  L K
Sbjct: 416 MCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCK 453



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           ++ AL+ +  ML     P +     L   + ++        L  +M   G+  D  T TI
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 96

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I+  C    +  ++ +   +  L  + D   ++ L+ GLC  G++  AL++F  +    
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 156

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              +VVTY  +++GL  D Q+ +A +LF +M    ++P++ T+ +LIH    + E   V 
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVT 216

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
            LL++M +  +MP+   ++IVVD L K
Sbjct: 217 TLLNEMVKSKIMPNVVSLNIVVDALCK 243



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 104/213 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L  +M S GI PDV     +      +++V+ A  +  ++ + G
Sbjct: 62  LLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLG 121

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T+T  + GLC  G I E++++F  +     + ++  Y  L++GLCK  +L  AL
Sbjct: 122 HQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEAL 181

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D+ TY+ +IH L N  +      L  +M ++ + PNV++   ++   
Sbjct: 182 NLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDAL 241

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  + ++  +++  M +  V PD    + ++D
Sbjct: 242 CKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMD 274



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CKN  +  A+ L   +    + PDV ++N    G+     +E A  LF  +   
Sbjct: 376 ILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPR 435

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+ I I GLCK G + E+ +LFR +    C  +   Y+ +  GL ++ +   A
Sbjct: 436 GLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRA 495

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           ++L   +      ADV T ++++  L +DG
Sbjct: 496 IQLLEEMLARGFSADVSTTALLVKMLSDDG 525


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 137/221 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK++ ++ A +L +EM  K + PD V ++TL  GL +  + + A  +F EM   
Sbjct: 373 ILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSY 432

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+I +DG CK+G++ E+++L ++++  K E +I  ++ LI+G+  +G+LE+A
Sbjct: 433 GLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVA 492

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    +   + TY++MI GL  +G  D+A+DLF  ME++   PN  ++  +I G
Sbjct: 493 KELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQG 552

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F++  + S  I L+ +M  K    + S   +++DL +++EI
Sbjct: 553 FLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDEI 593



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  A+   SEML +GI P+V  +N +  G   + Q+  A +LF EM    
Sbjct: 234 IIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRD 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T TI +DGLCK G + E+  +F T+     E +I  Y+ L+DG C    +  A 
Sbjct: 294 VMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAK 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + R      V +Y+I+I+G     +MD+A  L  +M   A+ P+ +T+ TL+ G 
Sbjct: 354 KVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 413

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   P + + +  +M    ++P+    SI++D   K+
Sbjct: 414 CQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKH 451



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   +I+ A+ L++EM+ +G +P+V+ +NT+  GL +      A  +F +M+++G
Sbjct: 164 LINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID LCK+  + +++E    +       ++  Y+C++ G C  G+L  A 
Sbjct: 224 CKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEAT 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    ++ D VT +I++ GL  +G + +A  +F  M E  V PN+ T+  L+ G+
Sbjct: 284 RLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGY 343

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                +NE  KV E+   M  +   P     +I+++   K+ 
Sbjct: 344 CLQRLMNEAKKVFEI---MIRQGCAPGVHSYNILINGFCKSR 382



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +  + K K+    ++L ++M   G+  +V   N L   L  ++ V+ A  +  +M + G
Sbjct: 94  FLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLG 153

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T+   I+GLC  G I E+VELF  +     E ++ +Y+ +I+GLCK+G   +A+
Sbjct: 154 IHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAV 213

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +     DVVTY+ +I  L  D  ++ A +   +M +  + PNV T+  ++HGF
Sbjct: 214 DVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGF 273

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + ++   L  +M  ++VMPD   ++I+VD L K
Sbjct: 274 CILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCK 310



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  C+   ++ A+++  +M   GI P     N L  GL    +++ A +LF+EM R 
Sbjct: 128 VLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRR 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+GLCK G    +V++F+ +    C+ D+  Y+ +ID LCK   +  A
Sbjct: 188 GHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDA 247

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           +E     L RG+   +V TY+ M+HG    GQ+++A  LF +M    V P+ +T   L+ 
Sbjct: 248 MEFLSEMLDRGI-PPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVD 306

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  +    S+   +   M EK V P+ S  + ++D
Sbjct: 307 GLCKEGMVSEARLVFETMTEKGVEPNISTYNALMD 341



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 108/222 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   +  A  ++  M  KG++P++  +N L  G      +  A K+F+ M R 
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQ 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A    +Y I I+G CK+  + E+  L   +       D   YS L+ GLC+ GR + A
Sbjct: 363 GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    L+ ++VTYSI++ G    G +D+A  L   M+E  + PN++    LI G
Sbjct: 423 LNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +     EL  K+    + P     ++++  L K  +S
Sbjct: 483 MFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLS 524



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 1/195 (0%)

Query: 28  KPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           KP +  +N  F+     +  ++ A   F  M R         +  F+    K       V
Sbjct: 49  KPSLPQNNGGFVSNNSTNISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVV 108

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   + +     ++ + + LI+ LC+   ++ A+ +   + +  +     T++ +I+GL
Sbjct: 109 SLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGL 168

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N+G++ +A +LF +M      PNVI++ T+I+G  +    S  +++  KM++    PD 
Sbjct: 169 CNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDV 228

Query: 207 SIVSIVVDLLAKNEI 221
              + ++D L K+ +
Sbjct: 229 VTYNTIIDSLCKDRL 243


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 128/221 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK   I+  L L+ +M  +G+  D V +NTL  G  E+ ++E A +LF EM   
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  +Y I +DGLC NG   +++E+F  +   K ELDI  Y+ +I G+C + +++ A
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 511

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF SLP   +  DV TY+IMI GL   G + +A  LF  MEE+  +PN  T+  LI  
Sbjct: 512 WDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +   + +K  +L+ ++K      DAS V +VVD+L+   +
Sbjct: 572 HLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRL 612



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 116/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +++ A ++   M+SKG  P++   N L  G  + + ++   +LF +M   G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V ADT TY   I G C+ G +  + ELF+ +   +   DI +Y  L+DGLC +G  E AL
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  +  D+  Y+I+IHG+ N  ++D A DLF  +    V P+V T+  +I G 
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    S+   L  KM+E    P+    +I++
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 119/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  ++  A  L+ EM+ +GI PD V + +L  G  + +Q+++A  + D M   G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + RT+ I I+G CK   I + +ELFR + +     D   Y+ LI G C+ G+LE+A 
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    +  D+V+Y I++ GL ++G+ +KA ++F  +E++ +  ++  +  +IHG 
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              ++     +L   +  K V PD    +I++  L K 
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 35/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------ 54
           I+I+G CK+  ++ A NL++EM  KG K D++I+ TL  G     + +   KL       
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 55  -----------------------------DEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                         EM + G++ DT TYT  IDG CK   + ++
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             +   +    C  +I+ ++ LI+G CK+  ++  LELF  +    +VAD VTY+ +I G
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G+++ A +LF +M    V P+++++  L+ G     EP K +E+  K+++  +  D
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 206 ASIVSIVV 213
             I +I++
Sbjct: 492 IGIYNIII 499



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  AL L   M+  G KP ++  N L  GL    +V  A  L D M   G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +  +CK+G    ++EL R +   K +LD   YS +IDGLCK G L+ A 
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +      AD++ Y+ +I G    G+ D    L  DM +  + P+V+ F  LI  F
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  EL  +M ++ + PD    + ++D   K
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 116/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C N ++  A+ L   M+  G +P+ V +  +   + +  Q   A +L  +M+   
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+I IDGLCK+G +  +  LF  + I   + DI  Y+ LI G C +GR +   
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  DVV +S +I     +G++ +A +L  +M +  ++P+ +T+ +LI GF
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            + N+  K   +L  M  K   P+    +I+++   K  +  + L  F
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELF 410



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 101/200 (50%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+ +   A+ L  +M  + IK D V ++ +  GL +   ++ AF LF+EM+  G  AD 
Sbjct: 223 CKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YT  I G C  G   +  +L R +   K   D+ A+S LID   K G+L  A EL   
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  +  D VTY+ +I G   + Q+DKA+ +   M      PN+ TF  LI+G+ + N 
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 187 PSKVIELLHKMKEKNVMPDA 206
               +EL  KM  + V+ D 
Sbjct: 403 IDDGLELFRKMSLRGVVADT 422



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+ +++  A +   +++  G +PD V  +TL  GL    +V  A +L D M   
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T    ++GLC NG + ++V L   +     + +   Y  ++  +CKSG+  +A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +    +  D V YSI+I GL  DG +D A +LF +ME      ++I + TLI G
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F          +LL  M ++ + PD    S ++D   K
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 102/205 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+ EM     +P ++  + LF  +    Q +    L  +M+  G+A +  T +I I+
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C+   +  +      +  L  E D   +S LI+GLC  GR+  ALEL   +       
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            ++T + +++GL  +G++  A  L   M E    PN +T+G ++    +  + +  +ELL
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            KM+E+ +  DA   SI++D L K+
Sbjct: 236 RKMEERKIKLDAVKYSIIIDGLCKD 260



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-------------GVAADTRTYTIFID 74
           K  V     L  G+ +I + + A  LF EM R               V A T+ Y + +D
Sbjct: 35  KGKVSYRERLRSGIVDIKE-DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLD 93

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            LCK   +        TL I+            I+  C+  +L +A      + +     
Sbjct: 94  -LCKQMELKGIAHNLYTLSIM------------INCCCRCRKLSLAFSAMGKIIKLGYEP 140

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VT+S +I+GL  +G++ +A +L   M E    P +IT   L++G     + S  + L+
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +M E    P+      V+ ++ K+
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKS 225


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 130/221 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK+  I+ A  L +EM  K + PD+  ++TL  G  ++ + + A +L  EM   
Sbjct: 225 ILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSY 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+I +DGLCK+G++ E+ EL + ++  K E +I  Y+ LI+G+C  G+LE A
Sbjct: 285 GLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF +L    +   VVTY++MI GL   G  ++A +LF +M  N   PN  T+  +I G
Sbjct: 345 RELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQG 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F+R  +    + L+ +M  K    D+S   ++ DL + +EI
Sbjct: 405 FLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLESSDEI 445



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 126/218 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  A++ +SEM+ +GI PDV  ++++  G   + +V  A  LF +M    
Sbjct: 86  IIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERN 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  T+TI IDGLCK   I E+  +F T+     E D+  Y+ L+DG C   +++ A 
Sbjct: 146 VIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQ 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ + R     +V +Y+I+I+G    G++D+A  L  +M   ++ P++ T+ TL+ GF
Sbjct: 206 KLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGF 265

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++  P +  ELL +M    ++P+    SIV+D L K+
Sbjct: 266 CQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKH 303



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 116/222 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK + I  A  ++  M  KG++PDV  +N L  G     Q++ A KLF+ M R 
Sbjct: 155 ILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRK 214

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A + R+Y I I+G CK+G I E+  L   +       DI  YS L+ G C+ GR + A
Sbjct: 215 GCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L+ +++TYSI++ GL   G +D+A +L   M+E+ + PN+  +  LI G
Sbjct: 275 QELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEG 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +     EL   +  K + P     ++++  L K  +S
Sbjct: 335 MCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLS 376



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 104/193 (53%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M   G++P +V  NTL  GL    ++  A KLFDEM + G   D  TY+  I+GLCK G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
              +++L + +    C+ ++ AY+ +ID LCK   +  A++ F  + +  +  DV TYS 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++HG  N G++++A  LF  M E  V PN +TF  LI G  +    S+   +   M EK 
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 202 VMPDASIVSIVVD 214
           + PD    + +VD
Sbjct: 181 LEPDVYTYNALVD 193



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C    +  A +L+ +M+ + + P+ V    L  GL +   +  A+ +F+ M   G
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +DG C    + E+ +LF  +    C  ++++Y+ LI+G CKSGR++ A 
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D+ TYS ++ G    G+  +A +L  +M    + PN+IT+  ++ G 
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL 300

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     +  ELL  M+E  + P+  I +I+++
Sbjct: 301 CKHGHLDEAFELLKAMQESKIEPNIFIYTILIE 333



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C   +I  A+ L+ EM+  G +PDV+ ++T+  GL ++     A +L  +M+  G
Sbjct: 16  LLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK+  + E+++ F  +       D+  YS ++ G C  GR+  A 
Sbjct: 76  CKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEAT 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    ++ + VT++I+I GL     + +A  +F  M E  + P+V T+  L+ G+
Sbjct: 136 SLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGY 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              ++  +  +L + M  K   P+    +I+++
Sbjct: 196 CSRSQMDEAQKLFNIMDRKGCAPNVRSYNILIN 228



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 97/184 (52%), Gaps = 1/184 (0%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M + G+     T+   + GLC    I+++V+LF  +  +  E D+  YS +I+GLCK G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
             +AL+L   +       +VV Y+ +I  L  D  + +A D F +M +  + P+V T+ +
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF-TVHERQ 235
           ++HGF  +   ++   L  +M E+NV+P+    +I++D L K  +   +   F T+ E+ 
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 236 EEVD 239
            E D
Sbjct: 181 LEPD 184


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 128/215 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + L+ EM  +G+  + V +NTL  GLF+    + A K+F +M  DG
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLCK G + +++ +F  L+  K E DI  Y+ +I+G+CK+G++E   
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +V+ Y+ MI G    G  ++A  LF +M+E+   P+   + TLI   
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRAR 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS +S+V+++L
Sbjct: 581 LRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 13/237 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC +K I  A+ L  +M+  G KPD V  NTL  GLF  ++   A  L D+M + G
Sbjct: 156 LLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G I  ++ L + +   K E D+  Y+ +IDGLCK   ++ A 
Sbjct: 216 CQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAF 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  DV TY+ +I  L N G+   A  L  +M E  + PNV+TF  LI  F
Sbjct: 276 ALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAF 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           ++  +  +  +L  +M ++++ PD    S +++              F +H+R +E 
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 379



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL +  +M+  G +PD+V  ++L  G     ++  A  L D+M   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+   I GL  +    E+V L   +    C+ D+  Y  +++GLCK G +++A
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +G + ADVV Y+ +I GL     +D A  LF  ME   + P+V T+ +LI  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + P+    S ++D   K
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVK 337



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 123/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI-----------HQVER- 49
           +I+G CK K I+ A  L+++M +KGI+PDV  +N+L   L              + +ER 
Sbjct: 261 IIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERK 320

Query: 50  -----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                  A KL+DEM +  +  D  TY+  I+G C +  + E+ 
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  +    C  ++  Y+ LI G CK+ R+E  +ELF  + +  LV + VTY+ +I GL
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G  D A  +F  M  + V P++IT+  L+ G  +  +  K + +   +++  + PD 
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500

Query: 207 SIVSIVVDLLAK 218
              +I+++ + K
Sbjct: 501 YTYNIMIEGMCK 512



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 109/202 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  +I+ AL+L  +M    I+ DVVI+NT+  GL +   ++ AF LF++M+  G
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I  LC  G   ++  L   +   K   ++  +S LID   K G+L  A 
Sbjct: 286 IRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAE 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + +  +  D+ TYS +I+G     ++D+A  +F  M      PNV+T+ TLI GF
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +     + +EL  +M ++ ++
Sbjct: 406 CKAKRVEEGMELFREMSQRGLV 427



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 103/210 (49%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           N +++ A+ L+ EM+     P +V  N L   + ++ + +    L + MQ   ++ D  +
Sbjct: 58  NLKLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYS 117

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y I I+  C+   +  ++ +   +  L  E DI   S L++G C S R+  A+ L   + 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 177

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                 D VT++ +IHGL+   +  +A  L   M +    P+++T+G +++G  +  +  
Sbjct: 178 EMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDID 237

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + LL KM++  +  D  I + ++D L K
Sbjct: 238 LALSLLKKMEKGKIEADVVIYNTIIDGLCK 267



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++E AL ++  +    ++PD+  +N +  G+ +  +VE  + LF  +   
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   YT  I G C+ G   E+  LFR ++      D   Y+ LI    + G    +
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAAS 589

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
            EL   +     V D  T S++I+ L+ DG+++K++
Sbjct: 590 AELIKEMRSCGFVGDASTISMVINMLH-DGRLEKSY 624


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 131/227 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK K +  A+ L+ E+  KG+KPD V ++T+  GL E+ ++  A K+FDEM R 
Sbjct: 348 ILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRV 407

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   ++  + G  K G + E++ LF  L   + + +I  Y+ +I+GLCK+ R+  A
Sbjct: 408 GPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREA 467

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  LP   L+ DV TY++MI G   +G  D+   +   ME+N    N IT+  ++ G
Sbjct: 468 HAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQG 527

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
           F R N+ S+++  + +M  +    DA+   +++++L +N   ++ +P
Sbjct: 528 FFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIVDMIP 574



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 125/237 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK+  ++ A+NL +EM  K I P++  +N+L  GL ++ Q E+   L  EM   
Sbjct: 208 IVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNL 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T++I IDGLCK G + ++ E+ R +     E DI  YS ++DG C  G+++ A
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F+ L    +  ++ +YSI+I+G      + KA  LF ++ +  + P+ +T+ T++HG
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            I +       ++  +M      PD  + S ++    K  +   ++  F+  ER  E
Sbjct: 388 LIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNRE 444



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 112/213 (52%), Gaps = 2/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG  K    E  L+L   M     KPDV  ++ +   L +   ++ A  L +EM++  
Sbjct: 174 VMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKN 233

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDGLCK G   +   L   +  L    ++  +S LIDGLCK G++E A 
Sbjct: 234 IPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDAD 293

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           E+  H + +GV   D++TYS ++ G    GQ+D+A  +F  + +  + PN+ ++  LI+G
Sbjct: 294 EVMRHMIEKGV-EPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILING 352

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +    +K ++L  ++ +K + PD    S ++
Sbjct: 353 YCKKKNLAKAMQLFGEISQKGLKPDTVTYSTIL 385



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ N YC    I+ A ++    L  GI  +VV  NTL  GLF  ++V  A  LF ++ R+
Sbjct: 102 IVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVRE 161

Query: 61  GVAADTRT-YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +       Y   ++GL K G+  +++ L R +     + D++ YS +ID LCK   L+ 
Sbjct: 162 KICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDA 221

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ L + + +  +  ++ TY+ +I GL   GQ +K   L  +M    + PNV TF  LI 
Sbjct: 222 AINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILID 281

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  +  +     E++  M EK V PD    S ++D
Sbjct: 282 GLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMD 316



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 114/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  ++E A  +   M+ KG++PD++ ++ +  G     QV+RA ++F+ ++  
Sbjct: 278 ILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDK 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +Y+I I+G CK   + ++++LF  +     + D   YS ++ GL + GR+  A
Sbjct: 338 GIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDA 397

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  + R     D+  +S ++ G +  G +++A  LF  +E N    N+  +  +I+G
Sbjct: 398 KKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVING 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             + +   +   +  K+    ++PD    ++++
Sbjct: 458 LCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMI 490



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G     ++  A+ L+ +++ + I +P+ V++ T+  GL +    E+   L   M++ 
Sbjct: 138 LLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQG 197

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D RTY+I ID LCK+  +  ++ L   ++      +I  Y+ LIDGLCK G+ E  
Sbjct: 198 NTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKV 257

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  +V T+SI+I GL  +G+++ A ++   M E  V P++IT+  ++ G
Sbjct: 258 KTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDG 317

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +    +  +   + + +++K + P+    SI+++   K +
Sbjct: 318 YCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKK 357



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 36/243 (14%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ------------- 58
           ++ A++L+  M+     P V+  + LF  +  +        LF EM+             
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 59  ----------------------RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RIL 95
                                 + G+  +  T+   + GL     + ++V LF+ L R  
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            CE +   Y  +++GL K G  E  L L   + +G    DV TYSI+I  L  D  +D A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
            +L  +M++  + PN+ T+ +LI G  ++ +  KV  LL +M   N+ P+    SI++D 
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 216 LAK 218
           L K
Sbjct: 283 LCK 285



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           E+  ++ A  LF  M R         ++     +    +    V LFR +RIL   +   
Sbjct: 39  EVSCLDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDS 98

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             + + +  C   R++ A  +     +  +  +VVT++ ++ GL+ + ++  A  LF  +
Sbjct: 99  ILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKL 158

Query: 163 -EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             E    PN + +GT+++G  +     K + LL  M++ N  PD    SIV+D L K+
Sbjct: 159 VREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKD 216


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 127/212 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  E+E    L  EM   G +PDVV +N L     +  ++ERA+  F EM+R+G
Sbjct: 235 LIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREG 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  T++ F+D  CKNG + E+++LF  +R+   + +   Y+CL+DG CK+GRL+ AL
Sbjct: 295 VMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDAL 354

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + + +  +  +VVTY++++ GL  +G++ +A D+F  ME   +  N + + TLIHG 
Sbjct: 355 VLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGH 414

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  + + LL +MK+K +  D S+   ++
Sbjct: 415 FVYKNSERALSLLSEMKDKGMELDVSLYGALI 446



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 109/216 (50%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           ++ +CKN  +  A+ L+++M  KG+KP+ V +  L  G  +  +++ A  L +EM + GV
Sbjct: 306 VDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGV 365

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             +  TYT+ +DGLCK G + E+ ++FR +       +   Y+ LI G       E AL 
Sbjct: 366 PLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALS 425

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L   +    +  DV  Y  +I GL N  ++D+A  L   M+E  + PN + +  ++    
Sbjct: 426 LLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACF 485

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  + S+ I LL KM +    P+      +VD L K
Sbjct: 486 KARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCK 521



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C  ++++ A +L ++M   G+KP+ VI+  +    F+  +   A  L  +M   G
Sbjct: 445 LIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSG 504

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +DGLCK G I E++  F  +  L  E ++QAY+ L+DGLCK+GRL+ A+
Sbjct: 505 FRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAV 564

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   +  +G+ + +VV  S+M  G    G +  A  L   M  + +  ++  +   + G
Sbjct: 565 LLLDEMIDKGMSLDNVVCTSLM-DGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWG 623

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F  +N   +  E+L +M E  + PDA + + +++
Sbjct: 624 FCNLNMIQEAREVLSEMIENGITPDAVVYNCLIN 657



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 4/188 (2%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + P+    N + + L      E A++LF+++     A +  T+ I ID LCK G + E+ 
Sbjct: 159 VPPNTRTCNHILLCLARERSSELAWRLFEQLP----APNVFTFNIMIDFLCKEGDLAEAR 214

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++ + C  D+  Y+ LIDG  K G LE   +L   +       DVVTY+ +++  
Sbjct: 215 ALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCF 274

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+M++A+  F +M+   V  NV+TF T +  F +     + ++L  +M+ K + P+ 
Sbjct: 275 CKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNE 334

Query: 207 SIVSIVVD 214
              + +VD
Sbjct: 335 VTYTCLVD 342



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 4/227 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + +  E A  L+ ++ +    P+V   N +   L +   +  A  L   M+  G + D  
Sbjct: 175 RERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVV 230

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   IDG  K G + E  +L   +R   C  D+  Y+ L++  CK GR+E A   F  +
Sbjct: 231 TYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEM 290

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R  ++A+VVT+S  +     +G + +A  LF  M    + PN +T+  L+ G  +    
Sbjct: 291 KREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRL 350

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
              + L ++M ++ V  +    +++VD L K      +   F + ER
Sbjct: 351 DDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMER 397



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 100/196 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+   K  E AL+L SEM  KG++ DV ++  L  GL  + +++ A  L ++M   G
Sbjct: 410 LIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  +D   K     E++ L + +       +I  Y  L+DGLCK+G ++ A+
Sbjct: 470 LKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAI 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    L  +V  Y+ ++ GL  +G++DKA  L  +M +  ++ + +   +L+ G 
Sbjct: 530 SHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGH 589

Query: 182 IRINEPSKVIELLHKM 197
           ++         L  KM
Sbjct: 590 LKQGNLQDAFALKAKM 605



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 100/214 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK  ++  A +++  M   GI+ + +++ TL  G F     ERA  L  EM+  
Sbjct: 374 VLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDK 433

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I GLC    + E+  L   +     + +   Y+ ++D   K+ +   A
Sbjct: 434 GMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEA 493

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       ++VTY  ++ GL   G +D+A   F  M +  + PNV  +  L+ G
Sbjct: 494 IALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDG 553

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +     K + LL +M +K +  D  + + ++D
Sbjct: 554 LCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMD 587



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   I+ A++ +++M+  G++P+V  +  L  GL +  ++++A  L DEM   G
Sbjct: 515 LVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG 574

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D    T  +DG  K G + ++  L   +     +LD+  Y+C + G C    ++ A 
Sbjct: 575 MSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAR 634

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           E+   +    +  D V Y+ +I+     G M++A  L  +ME 
Sbjct: 635 EVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 128/215 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+K +E    L+ EM  +G+  D V + TL  GLF     + A K+F +M  DG
Sbjct: 368 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 427

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLC NG + +++E+F  ++  + +LDI  Y+ +I+G+CK+G+++   
Sbjct: 428 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 487

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +VVTY+ MI GL +   + +A+ L   M+E+   PN  T+ TLI   
Sbjct: 488 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 547

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS + +V ++L
Sbjct: 548 LRDGDKAASAELIREMRSCRFVGDASTIGLVANML 582



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M+  G +PD +   TL  GLF  ++   A  L D M + G
Sbjct: 123 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 182

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + ++GLCK G    ++ L   +   K E D+  ++ +ID LCK   ++ AL
Sbjct: 183 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 242

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTYS +I  L + G+   A  L  DM E  + PN++TF  LI  F
Sbjct: 243 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 302

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +  +  +L   M ++++ PD
Sbjct: 303 VKEGKFVEAEKLYDDMIKRSIDPD 326



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
           +I+  CK + ++ ALNL+ EM +KGI+P+VV +++L                        
Sbjct: 228 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 287

Query: 38  -------FIGLFEIHQVERAF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                  F  L +    E  F    KL+D+M +  +  D  TY   ++G C +  + ++ 
Sbjct: 288 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 347

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  Y+ LI G CKS R+E   ELF  +    LV D VTY+ +I GL
Sbjct: 348 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 407

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           ++DG  D A  +F  M  + V P+++T+  L+ G     +  K +E+   M++  +  D 
Sbjct: 408 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 467

Query: 207 SIVSIVVDLLAK 218
            I + +++ + K
Sbjct: 468 YIYTTMIEGMCK 479



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  +I  AL L  +M+  G +P +V  ++L  G     ++  A  L D+M   
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  I GL  +    E+V L   +    C+ ++  Y  +++GLCK G  ++A
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 206

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + +    + ADVV ++ +I  L     +D A +LF +ME   + PNV+T+ +LI  
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S   +LL  M EK + P+    + ++D   K
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 304



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  + + ALNL ++M +  I+ DVVI NT+   L +   V+ A  LF EM+  
Sbjct: 192 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I  LC  G   ++ +L   +   K   ++  ++ LID   K G+   A
Sbjct: 252 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  + +  +  D+ TY+ +++G     ++DKA  +F  M      P+V+T+ TLI G
Sbjct: 312 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +        EL  +M  + ++ D    + ++
Sbjct: 372 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  +   A  LY +M+ + I PD+  +N+L  G     ++++A ++F+ M    
Sbjct: 298 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 357

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I G CK+  + +  ELFR +       D   Y+ LI GL   G  + A 
Sbjct: 358 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 417

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-------------------------- 155
           ++F  +    +  D++TYSI++ GL N+G+++KA                          
Sbjct: 418 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 477

Query: 156 ---------HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                     DLF  +    V PNV+T+ T+I G        +   LL KMKE   +P++
Sbjct: 478 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNS 537

Query: 207 SIVSIVV 213
              + ++
Sbjct: 538 GTYNTLI 544



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL NG   + +++ A+ L+  M+     P +V  N L   + ++ + +    L ++MQR 
Sbjct: 18  ILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL 76

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY I I+  C+   I  ++ L   +  L  E  I   S L++G C   R+  A
Sbjct: 77  EIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 136

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       D +T++ +IHGL+   +  +A  L   M +    PN++T+G +++G
Sbjct: 137 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 196

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +    + LL+KM+   +  D  I + ++D L K
Sbjct: 197 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 234



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N ++E AL ++  M    IK D+ I+ T+  G+ +  +V+  + LF  +   
Sbjct: 437 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 496

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I GLC    + E+  L + ++      +   Y+ LI    + G    +
Sbjct: 497 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAAS 556

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            EL   +     V D  T  ++ + L+ DG++DK+   FLDM
Sbjct: 557 AELIREMRSCRFVGDASTIGLVANMLH-DGRLDKS---FLDM 594


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 128/215 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+K +E    L+ EM  +G+  D V + TL  GLF     + A K+F +M  DG
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLC NG + +++E+F  ++  + +LDI  Y+ +I+G+CK+G+++   
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +VVTY+ MI GL +   + +A+ L   M+E+   PN  T+ TLI   
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS + +V ++L
Sbjct: 586 LRDGDKAASAELIREMRSCRFVGDASTIGLVANML 620



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M+  G +PD +   TL  GLF  ++   A  L D M + G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + ++GLCK G    ++ L   +   K E D+  ++ +ID LCK   ++ AL
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 280

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTYS +I  L + G+   A  L  DM E  + PN++TF  LI  F
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +  +  +L   M ++++ PD
Sbjct: 341 VKEGKFVEAEKLYDDMIKRSIDPD 364



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
           +I+  CK + ++ ALNL+ EM +KGI+P+VV +++L                        
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325

Query: 38  -------FIGLFEIHQVERAF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                  F  L +    E  F    KL+D+M +  +  D  TY   ++G C +  + ++ 
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  Y+ LI G CKS R+E   ELF  +    LV D VTY+ +I GL
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           ++DG  D A  +F  M  + V P+++T+  L+ G     +  K +E+   M++  +  D 
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505

Query: 207 SIVSIVVDLLAK 218
            I + +++ + K
Sbjct: 506 YIYTTMIEGMCK 517



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  +I  AL L  +M+  G +P +V  ++L  G     ++  A  L D+M   
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  I GL  +    E+V L   +    C+ ++  Y  +++GLCK G  ++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + +    + ADVV ++ +I  L     +D A +LF +ME   + PNV+T+ +LI  
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S   +LL  M EK + P+    + ++D   K
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  + + ALNL ++M +  I+ DVVI NT+   L +   V+ A  LF EM+  
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I  LC  G   ++ +L   +   K   ++  ++ LID   K G+   A
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 349

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  + +  +  D+ TY+ +++G     ++DKA  +F  M      P+V+T+ TLI G
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +        EL  +M  + ++ D    + ++
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  +   A  LY +M+ + I PD+  +N+L  G     ++++A ++F+ M    
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I G CK+  + +  ELFR +       D   Y+ LI GL   G  + A 
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-------------------------- 155
           ++F  +    +  D++TYSI++ GL N+G+++KA                          
Sbjct: 456 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 515

Query: 156 ---------HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                     DLF  +    V PNV+T+ T+I G        +   LL KMKE   +P++
Sbjct: 516 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNS 575

Query: 207 SIVSIVV 213
              + ++
Sbjct: 576 GTYNTLI 582



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL NG   + +++ A+ L+  M+     P +V  N L   + ++ + +    L ++MQR 
Sbjct: 56  ILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL 114

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY I I+  C+   I  ++ L   +  L  E  I   S L++G C   R+  A
Sbjct: 115 EIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       D +T++ +IHGL+   +  +A  L   M +    PN++T+G +++G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +    + LL+KM+   +  D  I + ++D L K
Sbjct: 235 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N ++E AL ++  M    IK D+ I+ T+  G+ +  +V+  + LF  +   
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I GLC    + E+  L + ++      +   Y+ LI    + G    +
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAAS 594

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            EL   +     V D  T  ++ + L+ DG++DK+   FLDM
Sbjct: 595 AELIREMRSCRFVGDASTIGLVANMLH-DGRLDKS---FLDM 632


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 128/221 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK K+++  + L+ +M  +G+  D V ++TL  G  +  ++  A K+F EM   
Sbjct: 410 ILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQ 469

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY I +DGLC NG + E++ +   +   K ELDI  Y+ +I G+C + +++ A
Sbjct: 470 GVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDA 529

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF SLP   +  D+ +Y+IM+ GL     + +A  LF  M+E+   P+  T+ TLI  
Sbjct: 530 WSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRA 589

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +R N+ +  ++L+ +MK      DAS V IV+D+L+  E+
Sbjct: 590 HLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSSGEL 630



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K  ++  A +LY+EM+++GI+P+ + +N+L  GL    +++ A ++ D M   G
Sbjct: 341 LIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKG 400

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I I+G CK   + + + LFR + +     D   YS LI G C+S +L +A 
Sbjct: 401 CDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAK 460

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    +   ++TY+I++ GL ++G++++A  +   M +  +  ++  +  +IHG 
Sbjct: 461 KVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGM 520

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              N+      L   +  K V  D    +I++  L K
Sbjct: 521 CNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCK 557



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+ +++  A +   ++   G +P+ V  NTL  GL    +V  A +L D M   
Sbjct: 130 IMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLS 189

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T    ++GLC    + E+V+L   +    C+ +   Y  +++ +CKSG    A
Sbjct: 190 QHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASA 249

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +   VVTY+I+I  L  DG++D A   F +ME   +  NV T+ +LI  
Sbjct: 250 LDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGS 309

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F          +LL  M  + + P+    S ++D L K
Sbjct: 310 FCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVK 347



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK+     AL+L  +M  + IKP VV +  +   L +  +++ A   F EM+  G
Sbjct: 236 ILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKG 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+  TY   I   C  G   +  +L R +   K   ++  +S LID L K G+L  A 
Sbjct: 296 IKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAK 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +    +  + +TY+ +I+GL ND ++D+A+ +   M      P++ T+  LI+GF
Sbjct: 356 DLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGF 415

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +    + L  KM  + ++ D    S ++
Sbjct: 416 CKAKQVDDGMRLFRKMSLRGMIADTVTYSTLI 447



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C    +  A++L + M++ G +P+   +  +   + +      A  L  +M+   
Sbjct: 201 IVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRK 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYTI ID LCK+G + +++  F  +     + ++  Y+ LI   C  GR +   
Sbjct: 261 IKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGA 320

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  +VVT+S +I  L  +G++ +A DL+ +M    + PN IT+ +LI+G 
Sbjct: 321 QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGL 380

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               R++E +++++L   M  K   PD    +I+++   K
Sbjct: 381 CNDKRLDEANQMMDL---MVSKGCDPDIWTYNILINGFCK 417



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +C     +    L  +M+++ I P+VV  + L   L +  ++  A  L++EM   G
Sbjct: 306 LIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRG 365

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   I GLC +  + E+ ++   +    C+ DI  Y+ LI+G CK+ +++  +
Sbjct: 366 IEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGM 425

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    ++AD VTYS +I G     ++  A  +F +M    V P ++T+  L+ G 
Sbjct: 426 RLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGL 485

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               E  + + +L +M +  +  D  I +I++
Sbjct: 486 CDNGELEEALGILDQMHKCKMELDIGIYNIII 517



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 16/241 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C    +  A+ L   M+     PD++  NT+  GL    +V  A  L   M  +G
Sbjct: 166 LLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   ++ +CK+G    +++L R +   K +  +  Y+ +ID LCK GRL+ AL
Sbjct: 226 CQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDAL 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    + A+V TY+ +I    + G+ D    L  DM    + PNV+TF  LI   
Sbjct: 286 SFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSL 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
           ++  + ++  +L ++M  + + P              N I+ NSL     ++++  +DE+
Sbjct: 346 VKEGKLTEAKDLYNEMITRGIEP--------------NTITYNSLIYGLCNDKR--LDEA 389

Query: 242 N 242
           N
Sbjct: 390 N 390



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 108/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK+  ++ AL+ +SEM +KGIK +V  +N+L        + +   +L  +M   
Sbjct: 270 IIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T++  ID L K G + E+ +L+  +     E +   Y+ LI GLC   RL+ A
Sbjct: 330 KITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEA 389

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       D+ TY+I+I+G     Q+D    LF  M    +  + +T+ TLI G
Sbjct: 390 NQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQG 449

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +     ++  +M  + V P     +I++D L  N
Sbjct: 450 FCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDN 488



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 106/223 (47%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           + A+ L+  ML     P V+  N LF  L    Q +    L  +M+  G+A D  T  I 
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIM 131

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+  C+   +  +      +  L  E +   ++ L++GLC  GR+  A+EL   +     
Sbjct: 132 INCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQH 191

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           V D++T + +++GL    ++ +A DL   M  N   PN  T+G +++   +    +  ++
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           LL KM+ + + P     +I++D L K+    ++L  F+  E +
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETK 294


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 134/228 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY + K+++ A+ L+ E+   G+KP +V  + L  GLFE+ + E A   FDEMQ  G
Sbjct: 359 LINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAG 418

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   + G  KNG + E++  F  L   + + +IQ Y+ +I+GLCK+G+L+ A 
Sbjct: 419 HIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAH 478

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  LP   L  DV+TY+ MI G   +G +D+A D+   ME+N   P+  T+  ++ GF
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGF 538

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            R ++ S++   L ++  K+   +A+ V +++D++A++   LN +P F
Sbjct: 539 FRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDIIAEDPSLLNMIPEF 586



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 121/237 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ +CK+  ++GA +L +EM  K I PD++ + +L  GL ++ Q E+   LF EM   
Sbjct: 218 IVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHL 277

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T+   IDGLCK G + ++ E+   +     E +   Y+ ++DG C  G++  A
Sbjct: 278 NIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRA 337

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F S+    +  D+++Y+ +I+G     +MDKA  LF ++ +N + P+++T   L+ G
Sbjct: 338 RRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRG 397

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
              +           +M+    +P+      ++    KN +   ++  F   ER+ E
Sbjct: 398 LFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE 454



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  C     +   ++ +    KGI  + V   TL  GLF  ++V+ A  LF ++ R+ 
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 62  VA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +   D   Y   +DGLCK G+  ++ +L R +     + D   Y+ +ID  CK G L+ A
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGA 232

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + + +  +  D++TY+ +I GL    Q +K   LFL+M    + P+V TF ++I G
Sbjct: 233 TSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDG 292

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +     E++  M EK V P+    ++V+D
Sbjct: 293 LCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMD 326



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 108/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK    + A +L   M     KPD  I+N +     +   ++ A  L +EM++  
Sbjct: 184 VMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKN 243

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDGL K     +   LF  +  L    D+  ++ +IDGLCK G++E A 
Sbjct: 244 IPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAE 303

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  + +TY++++ G    GQM +A  +F  M +  + P++I++  LI+G+
Sbjct: 304 EIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGY 363

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +   +  K ++L  ++ +  + P     S+++
Sbjct: 364 VEKKKMDKAMQLFREISQNGLKPSIVTCSVLL 395



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  ++E A  + + M+ KG++P+ + +N +  G     Q+ RA ++FD M   G
Sbjct: 289 VIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKG 348

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-------RILKCEL--------------- 99
           +  D  +YT  I+G  +   + ++++LFR +        I+ C +               
Sbjct: 349 IEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAK 408

Query: 100 ----DIQA---------YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
               ++QA         +  L+ G  K+G +E A+  FH L R     ++  Y+ +I+GL
Sbjct: 409 IFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGL 468

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++DKAH  F  +    + P+VIT+  +I G+ +     +  ++L KM++   +PD 
Sbjct: 469 CKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDN 528

Query: 207 SIVSIVV 213
              +++V
Sbjct: 529 RTYNVIV 535



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 1/210 (0%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K     ++++ E+    I  D    +T+      +H+ +  F +     + G+  +  T+
Sbjct: 86  KHYSSVVSIFREIHKLRIPVDAFALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTF 145

Query: 70  TIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           T  I GL     + ++V LF+ L R   CE D   Y  ++DGLCK G  + A +L   + 
Sbjct: 146 TTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLME 205

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           +G+   D   Y+I+I     DG +D A  L  +M++  + P++IT+ +LI G  ++++  
Sbjct: 206 QGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWE 265

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           KV  L  +M   N+ PD    + V+D L K
Sbjct: 266 KVRTLFLEMIHLNIYPDVCTFNSVIDGLCK 295



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G     +++ A++L+ +++ + I +PD V++ T+  GL +    ++AF L   M++ 
Sbjct: 148 LIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQG 207

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               DT  Y I ID  CK+G +  +  L   ++      DI  Y+ LIDGL K  + E  
Sbjct: 208 ITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKV 267

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  DV T++ +I GL  +G+++ A ++   M E  V PN IT+  ++ G
Sbjct: 268 RTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDG 327

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           +    +  +   +   M +K + PD
Sbjct: 328 YCLRGQMGRARRIFDSMIDKGIEPD 352



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 1/174 (0%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           ++ AF LF +M          +++  +  L    +    V +FR +  L+  +D  A S 
Sbjct: 53  LDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EEN 165
           +++  C   R ++   +     +  +  + VT++ +I GL+ + ++  A  LF  +  EN
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              P+ + +GT++ G  +     K  +LL  M++    PD  I +IV+D   K+
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKD 226


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 128/216 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK K ++  + L+ ++  +G+  + V ++ L  G  +  ++E A +LF EM   G
Sbjct: 351 LIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLG 410

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I +DGLC NG + +++E+F  L+  K  LDI  Y+ +I+G+CK G++E A 
Sbjct: 411 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAW 470

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF SLP   +  +V+TY++MI GL   G + +A+ L   MEE+   PN  T+ TLI   
Sbjct: 471 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAH 530

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +R  + +   +L+ +MK      DAS + +V+D+L+
Sbjct: 531 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLS 566



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 115/204 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC    +  A N+   M+     PD+V   +L  G  ++ +V+   KLF ++ + G
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRG 375

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+T TY+I + G C++G +  + ELF+ +  L    D+  Y  L+DGLC +G+LE AL
Sbjct: 376 LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKAL 435

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L +  +  D+V Y+I+I G+   G+++ A +LF  +    V PNV+T+  +I G 
Sbjct: 436 EIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 495

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +    S+   LL KM+E    P+
Sbjct: 496 CKKGSLSEANILLRKMEEDGNEPN 519



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 122/218 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ + K  +++ A  LY EM++KGI P+ + +N+L  G    +++  A  + D M R+
Sbjct: 280 VLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRN 339

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + D  T+T  I G CK   + E ++LFR +       +   YS L+ G C+SG+LEIA
Sbjct: 340 NCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIA 399

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    ++ DV+TY I++ GL ++G+++KA ++F D++++ +  +++ +  +I G
Sbjct: 400 EELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEG 459

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +      L   +  K V P+    ++++  L K
Sbjct: 460 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 497



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 111/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   ++  A+ L + M+  G +P+VV +N++  G+ +      A  L  +M    
Sbjct: 141 LINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERN 200

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY+  ID LC++G I  ++ LF+ +     +  +  Y+ L+ GLCK+G+    +
Sbjct: 201 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGV 260

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    ++ +V+T++++I     +G++ +A++L+ +M    ++PN IT+ +L+ G+
Sbjct: 261 QLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGY 320

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              N  S+   +L  M   N  PD
Sbjct: 321 CMQNRLSEANNMLDLMVRNNCSPD 344



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +    + L  +M S+ I P+V+  N L     +  +++ A +L+ EM   G
Sbjct: 246 LVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKG 305

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T TY   +DG C    + E+  +   +    C  DI  ++ LI G CK  R++  +
Sbjct: 306 ISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGM 365

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  LVA+ VTYSI++ G    G+++ A +LF +M    V P+V+T+G L+ G 
Sbjct: 366 KLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGL 425

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  K +E+   +++  +  D  + +I+++ + K
Sbjct: 426 CDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+  +   A ++  +++  G +PD    NTL  GL    +V  A  L   M  +
Sbjct: 105 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVEN 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   ++G+CK+G    +++L R +     + D+  YS +ID LC+ G ++ A
Sbjct: 165 GCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAA 224

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +    + + +VTY+ ++ GL   G+ +    L  DM    + PNVITF  LI  
Sbjct: 225 ISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDV 284

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F++  +  +  EL  +M  K + P+    + ++D
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMD 318



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 114/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK+ +   AL+L  +M  + +K DV  ++T+   L     ++ A  LF EM+  G
Sbjct: 176 IVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 235

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + +   TY   + GLCK G   + V+L + +   K   ++  ++ LID   K G+L+ A 
Sbjct: 236 IKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEAN 295

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    +  + +TY+ ++ G     ++ +A+++   M  N  +P+++TF +LI G+
Sbjct: 296 ELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGY 355

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++    + ++L  K+ ++ ++ +    SI+V
Sbjct: 356 CKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
             +G    K+    L+   +M   GI  ++   N +        +   A+ +  ++ + G
Sbjct: 71  FFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLG 130

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T+   I+GLC    + E+V L   +    C+ ++  Y+ +++G+CKSG   +AL
Sbjct: 131 YEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLAL 190

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    + ADV TYS +I  L  DG +D A  LF +ME   +  +++T+ +L+ G 
Sbjct: 191 DLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGL 250

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + +  ++LL  M  + ++P+    ++++D+  K
Sbjct: 251 CKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVK 287



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 37/206 (17%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+ EM+     P +V  +  F G+    Q         +M+ +G+A +  T  I I+
Sbjct: 49  AIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMIN 108

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-LEIALELFHSLPRGVLV 133
             C+                  C     AYS L       G+ +++  E           
Sbjct: 109 CFCR------------------CCKTCFAYSVL-------GKVMKLGYE----------- 132

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            D  T++ +I+GL  + ++ +A  L   M EN   PNV+T+ ++++G  +  + S  ++L
Sbjct: 133 PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDL 192

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKN 219
           L KM E+NV  D    S ++D L ++
Sbjct: 193 LRKMDERNVKADVFTYSTIIDSLCRD 218



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 73/146 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N ++E AL ++ ++    +  D+V++  +  G+ +  +VE A+ LF  +   
Sbjct: 420 ILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCK 479

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TYT+ I GLCK G + E+  L R +     E +   Y+ LI    + G L  +
Sbjct: 480 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTAS 539

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGL 146
            +L   +      AD  +  ++I  L
Sbjct: 540 AKLIEEMKSCGFSADASSIKMVIDML 565


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 132/220 (60%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A  L+ EM  K + P+ V +NTL +    + +++ A  LF EM   G
Sbjct: 355 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL-MHXCHVGRLQDAIALFHEMVAHG 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I +D LCK  ++ E++ L +T+     + DIQ Y+ +IDG+C++G LE A 
Sbjct: 414 QIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F +L    L  +V TY+IMI+GL   G +D+A+ LF++M+ N  +P+  T+ T+  G 
Sbjct: 474 DIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 533

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++  E  + I+LL +M  +    D S  +++V++L  +++
Sbjct: 534 LQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKL 573



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K+     +L ++M S GI PDV   N L      ++++  AF +  ++ + G
Sbjct: 75  LLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLG 134

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T+T  I GLC  G I +++ LF  +     + ++  Y  LI+GLCK G    A+
Sbjct: 135 HQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 194

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +G    DVV Y+ +I  L  D Q+ +A +LF  M    ++P++ T+ +LIH  
Sbjct: 195 RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 254

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M    +MPD  I S VVD L K
Sbjct: 255 CNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 291



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 116/217 (53%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+S+M+ +GI PD+  + +L   L  + + +    L ++M    
Sbjct: 215 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 274

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  +D LCK G I E+ ++   + I   E ++  Y+ L+DG C    ++ A+
Sbjct: 275 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 334

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       +V++Y+ +I+G     +MDKA  LF +M +  + PN +T+ TL+H  
Sbjct: 335 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-X 393

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +      I L H+M     +PD +   I++D L K
Sbjct: 394 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 430



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 35/240 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 145 LIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  ID LCK+  + E+  LF  +       DI  Y+ LI  LC     +   
Sbjct: 205 CQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVT 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD------------------------ 157
            L + +    ++ DVV +S ++  L  +G++ +AHD                        
Sbjct: 265 TLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGH 324

Query: 158 -----------LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                      +F  M  N  APNVI++ TLI+G+ +I    K   L  +M +K ++P+ 
Sbjct: 325 CLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNT 384



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 106/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++ +++L  G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 109 ILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE 168

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ D+  Y+ +ID LCK  ++  A
Sbjct: 169 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 228

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ +IH L N  +      L   M  + + P+V+ F T++  
Sbjct: 229 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 288

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  + ++  +++  M  + V P+    + ++D
Sbjct: 289 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMD 322



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 35/209 (16%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           ++ AL+ ++ ML     P  V  N L   + +  Q    F L ++M   G+  D  T  I
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
                                              LI+  C   RL  A  +   + +  
Sbjct: 110 -----------------------------------LINSFCHLNRLGFAFSVLAKILKLG 134

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              D  T++ +I GL  +G++  A  LF  M      PNV+T+GTLI+G  ++   +  I
Sbjct: 135 HQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 194

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LL  M++ N  PD  + + ++D L K+ 
Sbjct: 195 RLLRSMEQGNCQPDVVVYTSIIDSLCKDR 223



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK   ++ A+ L   +    + PD+ I+  +  G+    ++E A  +F  +   
Sbjct: 423 ILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSK 482

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  + RTYTI I+GLC+ G + E+ +LF  +    C  D   Y+ +  GL ++     A
Sbjct: 483 GLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRA 542

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           ++L   +      ADV T ++++  L +D ++D++
Sbjct: 543 IQLLQEMLARGFSADVSTTTLLVEMLCDD-KLDQS 576


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 128/220 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK   I+  L L+ +M  +G+  D V +NTL  G  E+ ++  A +LF EM   
Sbjct: 506 ILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR 565

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY I +DGLC NG   +++E+F  +   K ELDI  Y+ +I G+C + +++ A
Sbjct: 566 KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 625

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF SLP   +   V TY+IMI GL   G + +A  LF  MEE+  AP+  T+  LI  
Sbjct: 626 WDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 685

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +   + +K ++L+ ++K      DAS + +V+D+L+ ++
Sbjct: 686 HLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDDK 725



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   ++ A  +   M+SKG  P++   N L  G  + ++++   +LF +M   G
Sbjct: 472 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 531

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V ADT TY   I G C+ G +  + ELF+ +   K   +I  Y  L+DGLC +G  E AL
Sbjct: 532 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 591

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  +  D+  Y+I+IHG+ N  ++D A DLF  +    V P V T+  +I G 
Sbjct: 592 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 651

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    S+   L  KM+E    PD    +I++
Sbjct: 652 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 683



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  AL L   M+  G KPD++  NTL  GL    +   A  L D+M   G
Sbjct: 262 LINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG 321

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   ++ +CK+G    ++EL R +     +LD   YS +IDGLCK G L+ A 
Sbjct: 322 CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAF 381

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  +++TY+I+I G  N G+ D    L  DM +  + PNV+TF  LI  F
Sbjct: 382 NLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 441

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  EL  +M  + + PD    + ++D   K
Sbjct: 442 VKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 478



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 116/213 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C     +    L  +M+ + I P+VV  + L     +  ++  A +L  EM   
Sbjct: 401 ILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR 460

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A DT TYT  IDG CK  ++ ++ ++   +    C+ +I+ ++ LI+G CK+ R++  
Sbjct: 461 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 520

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF  +    +VAD VTY+ +I G    G+++ A +LF +M    V PN++T+  L+ G
Sbjct: 521 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 580

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                E  K +E+  K+++  +  D  I +I++
Sbjct: 581 LCDNGESEKALEIFEKIEKSKMELDIGIYNIII 613



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 118/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ + K  ++  A  L+ EM+ +GI PD + + +L  G  + + +++A ++ D M   
Sbjct: 436 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 495

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   + RT+ I I+G CK   I + +ELFR + +     D   Y+ LI G C+ G+L +A
Sbjct: 496 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 555

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    +  ++VTY I++ GL ++G+ +KA ++F  +E++ +  ++  +  +IHG
Sbjct: 556 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 615

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               ++     +L   +  K V P     +I++  L K
Sbjct: 616 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCK 653



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+ +++  A +   +++  G +P+ +  +TL  GL    +V  A +L D M   
Sbjct: 226 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 285

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T    ++GLC +G   E++ L   +    C+ +   Y  +++ +CKSG+  +A
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +    +  D V YSI+I GL   G +D A +LF +ME   +  N+IT+  LI G
Sbjct: 346 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 405

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F          +LL  M ++ + P+    S+++D   K
Sbjct: 406 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 443



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 102/205 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK+ +   A+ L  +M  + IK D V ++ +  GL +   ++ AF LF+EM+  G
Sbjct: 332 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 391

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY I I G C  G   +  +L R +   K   ++  +S LID   K G+L  A 
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 451

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  D +TY+ +I G   +  +DKA+ +   M      PN+ TF  LI+G+
Sbjct: 452 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 511

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            + N     +EL  KM  + V+ D 
Sbjct: 512 CKANRIDDGLELFRKMSLRGVVADT 536



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C + +   A+ L  +M+  G +P+ V +  +   + +  Q   A +L  +M+   
Sbjct: 297 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 356

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+I IDGLCK+G +  +  LF  + +     +I  Y+ LI G C +GR +   
Sbjct: 357 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 416

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +VVT+S++I     +G++ +A +L  +M    +AP+ IT+ +LI GF
Sbjct: 417 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 476

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   K  +++  M  K   P+    +I+++   K
Sbjct: 477 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 513



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 105/205 (51%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+ +M+     P V+  + LF  + +  Q +    L  +M+  G+A +  T +I I+
Sbjct: 170 AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMIN 229

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C+   +  +      +  L  E +   +S LI+GLC  GR+  ALEL   +       
Sbjct: 230 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 289

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D++T + +++GL   G+  +A  L   M E    PN +T+G +++   +  + +  +ELL
Sbjct: 290 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 349

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            KM+E+N+  DA   SI++D L K+
Sbjct: 350 RKMEERNIKLDAVKYSIIIDGLCKH 374


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 125/219 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+CK  ++  A  L  EM   G+ P+VV ++T+  G     +V+ A+KLF +M  +
Sbjct: 47  VLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN 106

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   + GLC+NG + E+ EL   +R    + D  +Y  L+ GLCK+G++++A
Sbjct: 107 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 166

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F     G    DVV YS +I GL   G++D+A  LF  M EN+  P+V+TF  L+ G
Sbjct: 167 LKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDG 226

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + +   +  ++L  M+++N  P+    S ++D L K 
Sbjct: 227 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 265



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 119/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C+N  ++ A  L  EM  +G++PD   ++TL  GL +  +++ A K+F++     
Sbjct: 118 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD 177

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  I GLCK G + E+ +LF  +R   CE D+  ++ L+DGLCK  RL+ A 
Sbjct: 178 CPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 237

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++  ++       +V+TYS +I GL   GQ+  A ++F  M    + PNV+T+ +LIHGF
Sbjct: 238 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 297

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              N     + L+ +M     +PD    + ++D L K 
Sbjct: 298 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT 335



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++  A  ++  M+ +GI+P+VV +N+L  G    + V+ A  L +EM   G
Sbjct: 258 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 317

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   IDGLCK G   E+  LF  ++   C  D+  YSCLI G CK  R+++A 
Sbjct: 318 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMAR 377

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  ++ DVVT+S ++ G  N G +D A  L  +M  +  +P+V T+ +L+ GF
Sbjct: 378 TLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGF 437

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++    +   +L +M ++   P+    + ++D   +
Sbjct: 438 CKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 474



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 114/204 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C+  +++ A  L+ +M+  G  P++V +NTL  GL     ++ A++L DEM+  G
Sbjct: 83  VIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERG 142

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   + GLCK G I  ++++F       C  D+ AYS LI GLCK+GRL+ A 
Sbjct: 143 LQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEAC 202

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       DVVT++ ++ GL    ++ +A  +   ME+    PNVIT+ +LI G 
Sbjct: 203 KLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 262

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +     E+  +M  + + P+
Sbjct: 263 CKTGQVRDAQEVFKRMIVRGIEPN 286



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +I+ AL ++ +  +    PDVV ++TL  GL +  +++ A KLF++M+ + 
Sbjct: 153 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENS 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  +DGLCK   + E+ ++  T+    C  ++  YS LIDGLCK+G++  A 
Sbjct: 213 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 272

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  +VVTY+ +IHG      +D A  L  +M      P++IT+ TLI G 
Sbjct: 273 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 332

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +   L   MK K   PD    S ++    K E
Sbjct: 333 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 371



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK   ++ A  L+ +M     +PDVV    L  GL +  +++ A ++ + M+   
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  IDGLCK G + ++ E+F+ + +   E ++  Y+ LI G C +  ++ AL
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + D++TY+ +I GL   G+  +A+ LF DM+     P+VIT+  LI GF
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 367

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++        L   M ++ V+PD    S +V+
Sbjct: 368 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVE 400



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK      A  L+ +M +K   PDV+ ++ L  G  ++ +++ A  LFD+M +  
Sbjct: 328 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 387

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T++  ++G C  G + ++  L   +    C  D+  Y+ L+DG CK GR+  A 
Sbjct: 388 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 447

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +     +VVTY+ +I      G+   A+ L  +M  N V PNVIT+ +LI GF
Sbjct: 448 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGF 507

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAKN 219
               +  +  ++L ++ +++N   D     +++D L + 
Sbjct: 508 CGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRT 546



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   ++ A  +   M  +   P+V+ +++L  GL +  QV  A ++F  M   G
Sbjct: 223 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 282

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I G C    +  ++ L   +    C  DI  Y+ LIDGLCK+GR   A 
Sbjct: 283 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 342

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       DV+TYS +I G     ++D A  LF DM + AV P+V+TF TL+ G+
Sbjct: 343 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 402

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                      LL +M   +  PD    + +VD   K
Sbjct: 403 CNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK + I+ A  L+ +ML + + PDVV  +TL  G      V+ A +L +EM    
Sbjct: 363 LIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TYT  +DG CK G +VE+  + + +    C+ ++  Y+ LID  C++G+  +A 
Sbjct: 423 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAY 482

Query: 122 EL---------------FHSLPRGVL---------------------VADVVTYSIMIHG 145
           +L               + SL  G                        AD+  Y +M+ G
Sbjct: 483 KLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDG 542

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK-EKNVMP 204
           L   G+M  A +L   ++++   P    +  LI G  +  E  K +E+L +M   +   P
Sbjct: 543 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP 602

Query: 205 DASIVSIVVDLLAK 218
           +A     V+  LA+
Sbjct: 603 NAEAYEAVIQELAR 616



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 94/190 (49%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +V+    +  GL + +++  A   F +M++ G   +  TY + I+G CK   +  +  L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           + ++      ++  YS +I G C+  +++ A +LF  +     + ++VTY+ ++ GL  +
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G MD+A++L  +M E  + P+  ++ TL+ G  +  +    +++       +  PD    
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 210 SIVVDLLAKN 219
           S ++  L K 
Sbjct: 186 STLIAGLCKT 195



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 73/125 (58%)

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           ++CE ++  ++ +IDGLCK+ RL  A   F  + +   V +  TY+++I+G     ++ +
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A+ L  +M+E+ +APNV+T+ T+IHGF R  +     +L  +M E   MP+    + ++ 
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 215 LLAKN 219
            L +N
Sbjct: 121 GLCRN 125


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 128/215 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + L+ EM  +G+  + V +NTL  GLF+    + A K+F +M  DG
Sbjct: 402 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 461

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLCK G + +++ +F  L+  K E +I  Y+ +I+G+CK+G++E   
Sbjct: 462 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGW 521

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +V+ Y+ MI G    G  ++A  LF +M+E+   P+   + TLI   
Sbjct: 522 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRAR 581

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS +S+V+++L
Sbjct: 582 LRDGDKAASAELIKEMRSCGFVGDASTISMVINML 616



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 15/240 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M+  G KPD V  NTL  GLF  ++   A  L D M   G
Sbjct: 157 LLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARG 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G I  ++ L + +   K E ++  Y+ +IDGLCK   ++ A 
Sbjct: 217 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAF 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  DV TY+ +I  L N G+   A  L  DM E  + PNV+TF +LI  F
Sbjct: 277 DLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAF 336

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL-PSFTVHERQEEVDE 240
            +  +  +  +L  +M ++++ P              N ++ NSL   F +H+R +E  +
Sbjct: 337 AKEGKLIEAEKLFDEMIQRSIDP--------------NIVTYNSLINGFCMHDRLDEAQQ 382



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-----------VER- 49
           +I+G CK K ++ A +L+++M +KGIKPDV  +N+L   L    +           +ER 
Sbjct: 262 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 50  -----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                  A KLFDEM +  +  +  TY   I+G C +  + E+ 
Sbjct: 322 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 381

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  Y+ LI G CK+ R+E  +ELF  + +  LV + VTY+ +I GL
Sbjct: 382 QIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 441

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G  D A  +F  M  + V P++IT+  L+ G  +  +  K + +   +++  + P+ 
Sbjct: 442 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNI 501

Query: 207 SIVSIVVDLLAK 218
              +I+++ + K
Sbjct: 502 YTYNIMIEGMCK 513



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 110/202 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  +I+ AL+L  +M    I+ +VVI+NT+  GL +   ++ AF LF++M+  G
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I  LC  G   ++  L   +   K   ++  ++ LID   K G+L  A 
Sbjct: 287 IKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAE 346

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  +  ++VTY+ +I+G     ++D+A  +F  M      P+V+T+ TLI GF
Sbjct: 347 KLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGF 406

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +     + +EL  +M ++ ++
Sbjct: 407 CKAKRVEEGMELFREMSQRGLV 428



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 103/208 (49%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A+ L+ EM+     P ++  + L   + ++++ +    L ++MQ  G+  +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I ++  C+   +  ++ +   +  L  E DI   S L++G C   R+  A+ L   +   
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D VT++ +IHGL+   +  +A  L   M      P++ T+GT+++G  +  +    
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + LL KM++  +  +  I + ++D L K
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCK 268



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 35/205 (17%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +C+  ++  AL +  +M+  G +PD+V  ++L  G     ++  A  L D+M   
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+   I GL  +    E+V L   +    C+                      
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQ---------------------- 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                         D+ TY  +++GL   G +D A  L   ME+  +  NV+ + T+I G
Sbjct: 219 -------------PDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDG 265

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +        +L +KM+ K + PD
Sbjct: 266 LCKYKHMDDAFDLFNKMETKGIKPD 290



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++E AL ++  +    ++P++  +N +  G+ +  +VE  + LF  +   
Sbjct: 471 ILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   YT  I G C+ G   E+  LFR ++      D   Y+ LI    + G    +
Sbjct: 531 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAAS 590

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
            EL   +     V D  T S++I+ L+ DG+++K++
Sbjct: 591 AELIKEMRSCGFVGDASTISMVINMLH-DGRLEKSY 625


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 128/215 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+K +E    L+ EM  +G+  D V + TL  GLF     + A K+F +M  DG
Sbjct: 330 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLC NG + +++E+F  ++  + +LDI  Y+ +I+G+CK+G+++   
Sbjct: 390 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +VVTY+ MI GL +   + +A+ L   M+E+   P+  T+ TLI   
Sbjct: 450 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS + +V ++L
Sbjct: 510 LRDGDKAASAELIREMRSCRFVGDASTIGLVANML 544



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M+  G +PD +   TL  GLF  ++   A  L D M + G
Sbjct: 85  LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 144

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + ++GLCK G I  +  L   +   K E D+  ++ +ID LCK   ++ AL
Sbjct: 145 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 204

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTYS +I  L + G+   A  L  DM E  + PN++TF  LI  F
Sbjct: 205 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 264

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +  +  +L   M ++++ PD
Sbjct: 265 VKEGKFVEAEKLHDDMIKRSIDPD 288



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
           +I+  CK + ++ ALNL+ EM +KGI+P+VV +++L                        
Sbjct: 190 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 38  -------FIGLFEIHQVERAF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                  F  L +    E  F    KL D+M +  +  D  TY   I+G C +  + ++ 
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 309

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  Y+ LI G CKS R+E   ELF  +    LV D VTY+ +I GL
Sbjct: 310 QMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 369

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           ++DG  D A  +F  M  + V P+++T+  L+ G     +  K +E+   M++  +  D 
Sbjct: 370 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 429

Query: 207 SIVSIVVDLLAK 218
            I + +++ + K
Sbjct: 430 YIYTTMIEGMCK 441



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  +   A  L+ +M+ + I PD+  +N+L  G     ++++A ++F+ M    
Sbjct: 260 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I G CK+  + +  ELFR +       D   Y+ LI GL   G  + A 
Sbjct: 320 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-------------------------- 155
           ++F  +    +  D++TYSI++ GL N+G+++KA                          
Sbjct: 380 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 439

Query: 156 ---------HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                     DLF  +    V PNV+T+ T+I G        +   LL KMKE   +PD+
Sbjct: 440 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDS 499

Query: 207 SIVSIVV 213
              + ++
Sbjct: 500 GTYNTLI 506



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           +L L  +M+  G +P +V  ++L  G     ++  A  L D+M   G   DT T+T  I 
Sbjct: 63  SLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 122

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GL  +    E+V L   +    C+ ++  Y  +++GLCK G +++A  L + +    + A
Sbjct: 123 GLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEA 182

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DVV ++ +I  L     +D A +LF +ME   + PNV+T+ +LI         S   +LL
Sbjct: 183 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
             M EK + P+    + ++D   K
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVK 266



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N ++E AL ++  M    IK D+ I+ T+  G+ +  +V+  + LF  +   
Sbjct: 399 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I GLC    + E+  L + ++      D   Y+ LI    + G    +
Sbjct: 459 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 518

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            EL   +     V D  T  ++ + L+ DG++DK+   FLDM
Sbjct: 519 AELIREMRSCRFVGDASTIGLVANMLH-DGRLDKS---FLDM 556



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%)

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +V S+ L   +  L  E  I   S L++G C   R+  A+ L   +       D +T++ 
Sbjct: 60  LVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 119

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +IHGL+   +  +A  L   M +    PN++T+G +++G  +  +      LL+KM+   
Sbjct: 120 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 179

Query: 202 VMPDASIVSIVVDLLAK 218
           +  D  I + ++D L K
Sbjct: 180 IEADVVIFNTIIDSLCK 196


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 128/215 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+K +E    L+ EM  +G+  D V + TL  GLF     + A K+F +M  DG
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLC NG + +++E+F  ++  + +LDI  Y+ +I+G+CK+G+++   
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +VVTY+ MI GL +   + +A+ L   M+E+   P+  T+ TLI   
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS + +V ++L
Sbjct: 511 LRDGDKAASAELIREMRSCRFVGDASTIGLVANML 545



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M+  G +PD +   TL  GLF  ++   A  L D M + G
Sbjct: 86  LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + ++GLCK G I  +  L   +   K E D+  ++ +ID LCK   ++ AL
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTYS +I  L + G+   A  L  DM E  + PN++TF  LI  F
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +  +  +L   M ++++ PD
Sbjct: 266 VKEGKFVEAEKLHDDMIKRSIDPD 289



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
           +I+  CK + ++ ALNL+ EM +KGI+P+VV +++L                        
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250

Query: 38  -------FIGLFEIHQVERAF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                  F  L +    E  F    KL D+M +  +  D  TY   I+G C +  + ++ 
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 310

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  Y+ LI G CKS R+E   ELF  +    LV D VTY+ +I GL
Sbjct: 311 QMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           ++DG  D A  +F  M  + V P+++T+  L+ G     +  K +E+   M++  +  D 
Sbjct: 371 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430

Query: 207 SIVSIVVDLLAK 218
            I + +++ + K
Sbjct: 431 YIYTTMIEGMCK 442



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  +I  AL L  +M+  G +P +V  ++L  G     ++  A  L D+M   
Sbjct: 50  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  I GL  +    E+V L   +    C+ ++  Y  +++GLCK G +++A
Sbjct: 110 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    + ADVV ++ +I  L     +D A +LF +ME   + PNV+T+ +LI  
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S   +LL  M EK + P+    + ++D   K
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  +   A  L+ +M+ + I PD+  +N+L  G     ++++A ++F+ M    
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I G CK+  + +  ELFR +       D   Y+ LI GL   G  + A 
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-------------------------- 155
           ++F  +    +  D++TYSI++ GL N+G+++KA                          
Sbjct: 381 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 440

Query: 156 ---------HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                     DLF  +    V PNV+T+ T+I G        +   LL KMKE   +PD+
Sbjct: 441 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDS 500

Query: 207 SIVSIVV 213
              + ++
Sbjct: 501 GTYNTLI 507



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 91/190 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +   N L   + ++ + +    L ++MQR G++ +  TY I I+  C+   I  ++ L
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +  L  E  I   S L++G C   R+  A+ L   +       D +T++ +IHGL+ 
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
             +  +A  L   M +    PN++T+G +++G  +  +      LL+KM+   +  D  I
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 209 VSIVVDLLAK 218
            + ++D L K
Sbjct: 188 FNTIIDSLCK 197



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N ++E AL ++  M    IK D+ I+ T+  G+ +  +V+  + LF  +   
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I GLC    + E+  L + ++      D   Y+ LI    + G    +
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 519

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            EL   +     V D  T  ++ + L+ DG++DK+   FLDM
Sbjct: 520 AELIREMRSCRFVGDASTIGLVANMLH-DGRLDKS---FLDM 557


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 125/219 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+CK  ++  A  L  EM   G+ P+VV ++T+  G     +V+ A+KLF +M  +
Sbjct: 166 VLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN 225

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   + GLC+NG + E+ EL   +R    + D  +Y  L+ GLCK+G++++A
Sbjct: 226 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 285

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F     G    DVV YS +I GL   G++D+A  LF  M EN+  P+V+TF  L+ G
Sbjct: 286 LKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDG 345

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + +   +  ++L  M+++N  P+    S ++D L K 
Sbjct: 346 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 384



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++  A  ++  M+ +GI+P+VV +N+L  G    + V+ A  L +EM   G
Sbjct: 377 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   IDGLCK G   E+  LF  ++   C  D+  YSCLI G CK  R+++A 
Sbjct: 437 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMAR 496

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  ++ DVVT+S ++ G  N G +D A  L  +M  +  +P+V T+ +L+ GF
Sbjct: 497 TLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGF 556

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++    +   +L +M ++   P+    + ++D   +
Sbjct: 557 CKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 593



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 119/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C+N  ++ A  L  EM  +G++PD   ++TL  GL +  +++ A K+F++     
Sbjct: 237 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD 296

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  I GLCK G + E+ +LF  +R   CE D+  ++ L+DGLCK  RL+ A 
Sbjct: 297 CPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 356

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++  ++       +V+TYS +I GL   GQ+  A ++F  M    + PNV+T+ +LIHGF
Sbjct: 357 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 416

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              N     + L+ +M     +PD    + ++D L K 
Sbjct: 417 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT 454



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 114/204 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C+  +++ A  L+ +M+  G  P++V +NTL  GL     ++ A++L DEM+  G
Sbjct: 202 VIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   + GLCK G I  ++++F       C  D+ AYS LI GLCK+GRL+ A 
Sbjct: 262 LQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEAC 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       DVVT++ ++ GL    ++ +A  +   ME+    PNVIT+ +LI G 
Sbjct: 322 KLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 381

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +     E+  +M  + + P+
Sbjct: 382 CKTGQVRDAQEVFKRMIVRGIEPN 405



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +I+ AL ++ +  +    PDVV ++TL  GL +  +++ A KLF++M+ + 
Sbjct: 272 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENS 331

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  +DGLCK   + E+ ++  T+    C  ++  YS LIDGLCK+G++  A 
Sbjct: 332 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 391

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  +VVTY+ +IHG      +D A  L  +M      P++IT+ TLI G 
Sbjct: 392 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 451

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +   L   MK K   PD    S ++    K E
Sbjct: 452 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 490



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK+ +++ A  L  EM   G  PD  I+N +   L +     +A   F  M+  
Sbjct: 64  VVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME-- 121

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+TI IDGLCK   + E+   F  ++      +   Y+ LI+G CK  ++  A
Sbjct: 122 -CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 180

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    L  +VVTYS +IHG     ++D A+ LF  M EN   PN++T+ TL+ G
Sbjct: 181 YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 240

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             R     +  ELL +M+E+ + PD
Sbjct: 241 LCRNGLMDEAYELLDEMRERGLQPD 265



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK   ++ A  L+ +M     +PDVV    L  GL +  +++ A ++ + M+   
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 366

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  IDGLCK G + ++ E+F+ + +   E ++  Y+ LI G C +  ++ AL
Sbjct: 367 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 426

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + D++TY+ +I GL   G+  +A+ LF DM+     P+VIT+  LI GF
Sbjct: 427 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 486

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++        L   M ++ V+PD    S +V+
Sbjct: 487 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVE 519



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   ++ A  +   M  +   P+V+ +++L  GL +  QV  A ++F  M   G
Sbjct: 342 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 401

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I G C    +  ++ L   +    C  DI  Y+ LIDGLCK+GR   A 
Sbjct: 402 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       DV+TYS +I G     ++D A  LF DM + AV P+V+TF TL+ G+
Sbjct: 462 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 521

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                      LL +M   +  PD    + +VD   K
Sbjct: 522 CNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK      A  L+ +M +K   PDV+ ++ L  G  ++ +++ A  LFD+M +  
Sbjct: 447 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T++  ++G C  G + ++  L   +    C  D+  Y+ L+DG CK GR+  A 
Sbjct: 507 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +     +VVTY+ +I      G+   A+ L  +M  N V PNVIT+ +LI GF
Sbjct: 567 RVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGF 626

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                + E  K++E L   +++N   D     +++D L + 
Sbjct: 627 CGTGDLEEARKILERLE--RDENCKADMFAYRVMMDGLCRT 665



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 113/212 (53%), Gaps = 3/212 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + + I+   ++       GI P+V  +  +  GL +   +++A +L +EM+  G   D  
Sbjct: 36  RARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAA 95

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y   I  LCK     ++++ FR++   +CE ++  ++ +IDGLCK+ RL  A   F  +
Sbjct: 96  IYNFVIHALCKARNTAKALDYFRSM---ECEKNVITWTIMIDGLCKANRLPEATTYFAKM 152

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +   V +  TY+++I+G     ++ +A+ L  +M+E+ +APNV+T+ T+IHGF R  + 
Sbjct: 153 KKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKV 212

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +L  +M E   MP+    + ++  L +N
Sbjct: 213 DTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 244



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK + I+ A  L+ +ML + + PDVV  +TL  G      V+ A +L +EM    
Sbjct: 482 LIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD 541

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TYT  +DG CK G +VE+  + + +    C+ ++  Y+ LID  C++G+  +A 
Sbjct: 542 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAY 601

Query: 122 ELFHSL---------------------------PRGVL---------VADVVTYSIMIHG 145
            L   +                            R +L          AD+  Y +M+ G
Sbjct: 602 RLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDG 661

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK-EKNVMP 204
           L   G+M  A +L   ++++   P    +  LI G  +  E  K +E+L +M   +   P
Sbjct: 662 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP 721

Query: 205 DASIVSIVVDLLAK 218
           +A     V+  LA+
Sbjct: 722 NAEAYEAVIQELAR 735



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 118 EIALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + AL  FH   +      +V TY+ +   L    ++D+   +  +     + PNV T+  
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
           +I G  +  +  K  ELL +M+E   +PDA+I + V+  L K   +  +L  F   E ++
Sbjct: 65  VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK 124

Query: 237 EV 238
            V
Sbjct: 125 NV 126


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 125/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+ K +  A+    EM++ G+ PDVV  +TL  G  +  +   A +LF  M + G
Sbjct: 312 LIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHG 371

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D +T  I +DGL K  +  E++ LFR L  +  +LDI  YS +++G+C SG+L  AL
Sbjct: 372 QLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDAL 431

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  L    +  DVVTY+IMI+GL  +G +D A DL + MEEN   P+  T+   + G 
Sbjct: 432 ELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 491

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R  E SK  + L  MK K    +A+   ++++  + N+
Sbjct: 492 LRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFSANK 530



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +  AL+L+S+M  KGI+P++  +N L  GL    + + A  L   M R G
Sbjct: 172 VVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKG 231

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +T+ +      K G I  +  +F  +  +  E ++  Y+ +I   C   +++ A+
Sbjct: 232 IMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAM 291

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R   + ++VTY+ +IHG      M+KA     +M  N + P+V+T+ TLI GF
Sbjct: 292 EVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGF 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +P    EL   M +   +PD    +I++D L K
Sbjct: 352 CKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFK 388



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 2/227 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K    A++L   M   G+KP+V  HN +   L  ++     F +   M + GV     
Sbjct: 38  KMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIV 97

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+T  ++GLC  G + +++     L+ +  E D      +I+GLCK G    AL     +
Sbjct: 98  TFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKM 157

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV  YS ++ GL  DG + +A DLF  M    + PN+ T+  LIHG    +  
Sbjct: 158 EEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRW 217

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI--SLNSLPSFTVH 232
            +   LL  M  K +MPD    +++     K  +     S+ SF  H
Sbjct: 218 KEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGH 264



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 94/204 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C    +  A+     +   G + D      +  GL ++     A     +M+   
Sbjct: 102 IVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQN 161

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  +DGLCK+G + E+++LF  +     + ++  Y+CLI GLC   R + A 
Sbjct: 162 CNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAA 221

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++ R  ++ DV T++++       G + +A  +F  M    +  NV+T+ ++I   
Sbjct: 222 PLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAH 281

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             +N+    +E+   M  K  +P+
Sbjct: 282 CMLNQMKDAMEVFDLMIRKGCLPN 305



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 100/213 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C     + A  L + M+ KGI PDV   N +     +   + RA  +F  M   G
Sbjct: 207 LIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMG 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I   C    + +++E+F  +    C  +I  Y+ LI G C++  +  A+
Sbjct: 267 IEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAM 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  DVVT+S +I G    G+   A +LF  M ++   P++ T   ++ G 
Sbjct: 327 YFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGL 386

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + +  S+ + L  ++++ N   D  I SI+++
Sbjct: 387 FKCHFHSEAMSLFRELEKMNSDLDIIIYSIILN 419



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 53/93 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG C + ++  AL L+S + SKG+K DVV +N +  GL +   ++ A  L  +M+ +
Sbjct: 416 IILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEEN 475

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G   D  TY +F+ GL +   I +S +    ++
Sbjct: 476 GCPPDECTYNVFVQGLLRRYEISKSTKYLMFMK 508



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 35/221 (15%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K ++ AL+ Y +M++    P V   N LF  + ++     A  L   M   GV  +  T+
Sbjct: 5   KSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTH 64

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
            I I+ LC+   +  +V  F  L ++                      +I +E       
Sbjct: 65  NIVINCLCR---LNHTVFGFSVLGLM---------------------FKIGVE------- 93

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                 +VT++ +++GL  +G + +A      +++     +  T G +I+G  ++   S 
Sbjct: 94  ----PSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSA 149

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
            +  L KM+E+N   D +  S VVD L K+ +   +L  F+
Sbjct: 150 ALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFS 190



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G  K      A++L+ E+       D++I++ +  G+    ++  A +LF  +   
Sbjct: 381 IILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSK 440

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY I I+GLCK G + ++ +L   +    C  D   Y+  + GL +   +  +
Sbjct: 441 GVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKS 500

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
            +    +      A+  T  ++I+  ++  + ++A  +FL
Sbjct: 501 TKYLMFMKGKGFRANATTTKLLIN-YFSANKENRAFQVFL 539


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK   I+  L L+ +M  +G+  D V +NTL  G  E+ ++  A +LF EM   
Sbjct: 408 ILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR 467

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY I +DGLC NG   +++E+F  +   K ELDI  Y+ +I G+C + +++ A
Sbjct: 468 KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 527

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF SLP   +   V TY+IMI GL   G + +A  LF  MEE+  AP+  T+  LI  
Sbjct: 528 WDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 587

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +   + +K ++L+ ++K      DAS + +V+D+L+   +
Sbjct: 588 HLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRL 628



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   ++ A  +   M+SKG  P++   N L  G  + ++++   +LF +M   G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V ADT TY   I G C+ G +  + ELF+ +   K   +I  Y  L+DGLC +G  E AL
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  +  D+  Y+I+IHG+ N  ++D A DLF  +    V P V T+  +I G 
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    S+   L  KM+E    PD    +I++
Sbjct: 554 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  AL L   M+  G KPD++  NTL  GL    +   A  L D+M   G
Sbjct: 164 LINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   ++ +CK+G    ++EL R +     +LD   YS +IDGLCK G L+ A 
Sbjct: 224 CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAF 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  +++TY+I+I G  N G+ D    L  DM +  + PNV+TF  LI  F
Sbjct: 284 NLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  EL  +M  + + PD    + ++D   K
Sbjct: 344 VKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 116/213 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C     +    L  +M+ + I P+VV  + L     +  ++  A +L  EM   
Sbjct: 303 ILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A DT TYT  IDG CK  ++ ++ ++   +    C+ +I+ ++ LI+G CK+ R++  
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF  +    +VAD VTY+ +I G    G+++ A +LF +M    V PN++T+  L+ G
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                E  K +E+  K+++  +  D  I +I++
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 118/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ + K  ++  A  L+ EM+ +GI PD + + +L  G  + + +++A ++ D M   
Sbjct: 338 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   + RT+ I I+G CK   I + +ELFR + +     D   Y+ LI G C+ G+L +A
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 457

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    +  ++VTY I++ GL ++G+ +KA ++F  +E++ +  ++  +  +IHG
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 517

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               ++     +L   +  K V P     +I++  L K
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCK 555



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+ +++  A +   +++  G +P+ +  +TL  GL    +V  A +L D M   
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T    ++GLC +G   E++ L   +    C+ +   Y  +++ +CKSG+  +A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +    +  D V YSI+I GL   G +D A +LF +ME   +  N+IT+  LI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F          +LL  M ++ + P+    S+++D   K
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 102/205 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK+ +   A+ L  +M  + IK D V ++ +  GL +   ++ AF LF+EM+  G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY I I G C  G   +  +L R +   K   ++  +S LID   K G+L  A 
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  D +TY+ +I G   +  +DKA+ +   M      PN+ TF  LI+G+
Sbjct: 354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 413

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            + N     +EL  KM  + V+ D 
Sbjct: 414 CKANRIDDGLELFRKMSLRGVVADT 438



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 117/236 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK+  ++ A NL++EM  KGI  +++ +N L  G     + +   KL  +M + 
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+++ ID   K G + E+ EL + +       D   Y+ LIDG CK   L+ A
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 387

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       ++ T++I+I+G     ++D   +LF  M    V  + +T+ TLI G
Sbjct: 388 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 447

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
           F  + + +   EL  +M  + V P+     I++D L  N  S  +L  F   E+ +
Sbjct: 448 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C + +   A+ L  +M+  G +P+ V +  +   + +  Q   A +L  +M+   
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+I IDGLCK+G +  +  LF  + +     +I  Y+ LI G C +GR +   
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +VVT+S++I     +G++ +A +L  +M    +AP+ IT+ +LI GF
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   K  +++  M  K   P+    +I+++   K
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 415



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 105/205 (51%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+ +M+     P V+  + LF  + +  Q +    L  +M+  G+A +  T +I I+
Sbjct: 72  AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMIN 131

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C+   +  +      +  L  E +   +S LI+GLC  GR+  ALEL   +       
Sbjct: 132 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 191

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D++T + +++GL   G+  +A  L   M E    PN +T+G +++   +  + +  +ELL
Sbjct: 192 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            KM+E+N+  DA   SI++D L K+
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKH 276


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 118/204 (57%), Gaps = 2/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK K ++ A+NL  EML K + PD V +N+L  GL +  ++  A  L +EM   
Sbjct: 295 IMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR 354

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TYT  +D LCKN  + ++  LF  ++    +  +  Y+ LIDGLCK GRL+ A
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 414

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            ELF H L +G  + DV TY++MI GL  +G  D+A  +   ME+N   PN +TF  +I 
Sbjct: 415 QELFQHLLVKGCCI-DVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIR 473

Query: 180 GFIRINEPSKVIELLHKMKEKNVM 203
                +E  K  +LLH+M  K ++
Sbjct: 474 SLFEKDENDKAEKLLHEMIAKGLL 497



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK   ++ A NL + M  +GIKP VV ++TL  G   + +V+ A ++F  M + 
Sbjct: 225 ILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQM 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  +Y I I+GLCK   + E++ L R +       D   Y+ LIDGLCKSGR+  A
Sbjct: 285 GVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + +      ADVVTY+ ++  L  +  +DKA  LF+ M+E  + P + T+  LI G
Sbjct: 345 LNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDG 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +        EL   +  K    D    ++++  L K
Sbjct: 405 LCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCK 442



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 119/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A +LYSEM ++GI PD + + TL  G   + Q+  AF L DEM    
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKN 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y I I+ LCK G + E+  L   +     +  +  YS L+DG C  G ++ A 
Sbjct: 216 INPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAK 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH++ +  +  +V +Y+IMI+GL    ++D+A +L  +M    + P+ +T+ +LI G 
Sbjct: 276 QIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +    +  + L+++M  +    D    + ++D L KN+
Sbjct: 336 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQ 374



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 1/239 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  E   A+ L   +  +  +P+VV++NT+  GL +   V  A+ L+ EM   G
Sbjct: 121 LLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I G C  G ++ +  L   + +      +  Y+ LI+ LCK G ++ A 
Sbjct: 181 IFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAK 240

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +   VVTYS ++ G    G++  A  +F  M +  V PNV ++  +I+G 
Sbjct: 241 NLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGL 300

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHERQEEVD 239
            +     + + LL +M  KN++PD    + ++D L K+    ++L     +H R +  D
Sbjct: 301 CKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPAD 359



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 109/211 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K+   A++L  +M  KGI+ + V  N L      + Q+  +F +  ++ + G   DT 
Sbjct: 22  KMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTI 81

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T    + GLC  G + +S+     +     ++D  +Y  L++GLCK G    A++L   +
Sbjct: 82  TLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMI 141

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  +VV Y+ +I GL  D  +++A+DL+ +M+   + P+ IT+ TLI+GF  + + 
Sbjct: 142 EDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQL 201

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                LL +M  KN+ P   I +I+++ L K
Sbjct: 202 MGAFSLLDEMILKNINPGVYIYNILINALCK 232



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   E++ +L+ + +++++G + D V + TL  GL +I +   A KL   ++   
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRS 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   IDGLCK+  + E+ +L+  +       D   Y+ LI G C  G+L  A 
Sbjct: 146 TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAF 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +   V  Y+I+I+ L  +G + +A +L   M +  + P V+T+ TL+ G+
Sbjct: 206 SLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGY 265

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E     ++ H M +  V P+    +I+++ L K
Sbjct: 266 CLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCK 302



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P ++  N +   L ++ Q   A  L  +M+  G+ A+  T  I I+  C  G +  S  +
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +  L  + D    + L+ GLC  G ++ +L     +       D V+Y  +++GL  
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            G+   A  L   +E+ +  PNV+ + T+I G  +    ++  +L  +M  + + PDA
Sbjct: 128 IGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDA 185


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 128/220 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC  K ++  + ++  +  +G+  + V ++ L  G  +  +++ A +LF EM   G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I +DGLC NG + +++E+F  L+  K +L I  Y+ +I+G+CK G++E A 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF SLP   +  +V+TY++MI GL   G + +A+ L   MEE+  APN  T+ TLI   
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +R  + +   +L+ +MK      DAS + +V+D+L   E+
Sbjct: 554 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGEL 593



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+  +   A ++  +++  G +PD    NTL  GLF   +V  A  L D M  +
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++G+C++G    +++L R +     + D+  YS +ID LC+ G ++ A
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +    + + VVTY+ ++ GL   G+ +    L  DM    + PNVITF  L+  
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F++  +  +  EL  +M  + + P+    + ++D
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G     ++  A+ L   M+  G +PDVV +N++  G+        A  L  +M+   
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY+  ID LC++G I  ++ LF+ +     +  +  Y+ L+ GLCK+G+     
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +V +V+T+++++     +G++ +A++L+ +M    ++PN+IT+ TL+ G+
Sbjct: 284 LLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              N  S+   +L  M      PD
Sbjct: 344 CMQNRLSEANNMLDLMVRNKCSPD 367



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 2/202 (0%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G CK  K  +GAL L  +M+S+ I P+V+  N L     +  +++ A +L+ EM   
Sbjct: 269 LVRGLCKAGKWNDGAL-LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY   +DG C    + E+  +   +   KC  DI  ++ LI G C   R++  
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F ++ +  LVA+ VTYSI++ G    G++  A +LF +M  + V P+V+T+G L+ G
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
                +  K +E+   +++  +
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKM 469



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C++ +   AL+L  +M  + +K DV  ++T+   L     ++ A  LF EM+  G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + +   TY   + GLCK G   +   L + +   +   ++  ++ L+D   K G+L+ A 
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    +  +++TY+ ++ G     ++ +A+++   M  N  +P+++TF +LI G+
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +      +++   + ++ ++ +A   SI+V
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 104/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + K+    L+   ++   GI  ++   N +        +   A+ +  ++ + G   DT 
Sbjct: 100 RTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTT 159

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I GL   G + E+V L   +    C+ D+  Y+ +++G+C+SG   +AL+L   +
Sbjct: 160 TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM 219

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               + ADV TYS +I  L  DG +D A  LF +ME   +  +V+T+ +L+ G  +  + 
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    LL  M  + ++P+    ++++D+  K
Sbjct: 280 NDGALLLKDMVSREIVPNVITFNVLLDVFVK 310



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +V     L  G+ +I + + A  LF EM R         ++ F   + +       ++  
Sbjct: 53  NVCFRERLRSGIVDIKK-DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           + L +     +I   + +I+  C+  +   A  +   + +     D  T++ +I GL+ +
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++ +A  L   M EN   P+V+T+ ++++G  R  + S  ++LL KM+E+NV  D    
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231

Query: 210 SIVVDLLAKN 219
           S ++D L ++
Sbjct: 232 STIIDSLCRD 241


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 124/210 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK K I+ A  L++EM+ +G+ P+ V +NTL  GL ++  +  A  LF  M  +
Sbjct: 383 ILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTN 442

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY+I +DG CK GY  ++  LFR ++    + ++  Y+ LID +CKSG L  A
Sbjct: 443 GNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDA 502

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  L    L  +   Y+ +I+GL  +G +D+A + F +MEE+   P+ I++  +I G
Sbjct: 503 RKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRG 562

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           F+   + S+ ++L+ +M++K  + D    +
Sbjct: 563 FLHHKDESRAVQLIGEMRDKGFIADVGTTA 592



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ + K++ +  AL+++S M  KGI PD+  +N+L  GL    Q + A  L +EM+   
Sbjct: 244 IIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLN 303

Query: 62  VAADTRTYTIFIDGLCKNGYI-----------------------------------VESV 86
           +  D  T+ + +D +CK G +                                   VE+ 
Sbjct: 304 IMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEAR 363

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF  +    C+ D+ +Y+ LI+G CK  R++ A +LF+ +    L  + V+Y+ +IHGL
Sbjct: 364 KLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGL 423

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G + +A +LF +M  N   PN+ T+  L+ GF +     K   L   M+     P+ 
Sbjct: 424 CQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNL 483

Query: 207 SIVSIVVDLLAKN 219
            + +I++D + K+
Sbjct: 484 VMYNILIDAMCKS 496



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK  +   A+ L+ +M+++G +PDV  + T+  GL +I +   A  L  +M+  G
Sbjct: 174 LINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAG 233

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  ID   K+  + E++++F  +++     DI  Y+ LI GLC   + + A 
Sbjct: 234 CQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEAS 293

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ D+VT+++++  +  +G++ +A  +   M E  V P+V+T+ +L++G+
Sbjct: 294 ALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGY 353

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +E  +  +L   M  K   PD    +I+++   K
Sbjct: 354 SLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCK 390



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 107/203 (52%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           ++L  +M   G+ P++   + L      + +V+ AF +  ++ + G+     T+T  I+ 
Sbjct: 118 ISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINW 177

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LCK G   +++ELF  +    C  D+  Y+ +I+GLCK G    A  L   +       +
Sbjct: 178 LCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPN 237

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTYS +I     D ++++A D+F  M+   ++P++ T+ +LI G    ++  +   LL+
Sbjct: 238 VVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLN 297

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +M+  N+MPD    +++VD + K
Sbjct: 298 EMRSLNIMPDIVTFNVLVDTICK 320



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 111/229 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CK  ++  A  +   M   G++PDVV +++L  G     +V  A KLFD M   
Sbjct: 313 VLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITK 372

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y I I+G CK   I E+ +LF  +       +  +Y+ LI GLC+ G L  A
Sbjct: 373 GCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREA 432

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF ++     + ++ TYSI++ G    G   KA  LF  M+     PN++ +  LI  
Sbjct: 433 RNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDA 492

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +        +L  ++  K + P+A I + +++ L K  +   +L +F
Sbjct: 493 MCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAF 541



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 107/210 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +   + ++ A ++ ++++  G++P +V   TL   L ++ +  +A +LFD+M   
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  I+GLCK G    +  L + +    C+ ++  YS +ID   K  R+  A
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  D+ TY+ +I GL N  Q  +A  L  +M    + P+++TF  L+  
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
             +  + S+   +L  M E  V PD    S
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEPDVVTYS 347



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  E   A  L  +M   G +P+VV ++T+     +  +V  A  +F  M+  G
Sbjct: 209 IINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKG 268

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I GLC      E+  L   +R L    DI  ++ L+D +CK G++  A 
Sbjct: 269 ISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQ 328

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++    +  DVVTYS +++G     ++ +A  LF  M      P+V ++  LI+G+
Sbjct: 329 GVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGY 388

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++    +  +L ++M  + + P+
Sbjct: 389 CKVKRIDEAKQLFNEMIHQGLTPN 412



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 69  YTIFIDGLCKNGYIVESV-ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           +T  +  + K G   ++V  L + + +     +I   S LI+      R+++A  +   +
Sbjct: 100 FTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKI 159

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +  L   +VT++ +I+ L   G+  +A +LF DM      P+V T+ T+I+G  +I E 
Sbjct: 160 IKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGET 219

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    LL KM+E    P+    S ++D
Sbjct: 220 AAAAGLLKKMEEAGCQPNVVTYSTIID 246


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 128/220 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC  K ++  + ++  +  +G+  + V ++ L  G  +  +++ A +LF EM   G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I +DGLC NG + +++E+F  L+  K +L I  Y+ +I+G+CK G++E A 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF SLP   +  +V+TY++MI GL   G + +A+ L   MEE+  APN  T+ TLI   
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +R  + +   +L+ +MK      DAS + +V+D+L   E+
Sbjct: 554 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGEL 593



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   ++  A+ L   M+  G +PD+V +N++  G+        AF +  +M+   
Sbjct: 164 LINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERN 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY+  ID LC++G I  ++ LF+ +     +  +  Y+ L+ GLCK+G+     
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +V +V+T+++++     +G++ +A++L+ +M    ++PN+IT+ TL+ G+
Sbjct: 284 LLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              N  S+   +L  M      PD
Sbjct: 344 CMQNRLSEANNMLDLMVRNKCSPD 367



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+  +   A ++  +++  G +PD    NTL  GL    +V +A  L D M  +
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVEN 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++G+C++G    + ++ R +     + D+  YS +ID LC+ G ++ A
Sbjct: 188 GCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +    + + VVTY+ ++ GL   G+ +    L  DM    + PNVITF  L+  
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F++  +  +  EL  +M  + + P+    + ++D
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 2/202 (0%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G CK  K  +GAL L  +M+S+ I P+V+  N L     +  +++ A +L+ EM   
Sbjct: 269 LVRGLCKAGKWNDGAL-LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY   +DG C    + E+  +   +   KC  DI  ++ LI G C   R++  
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F ++ +  LVA+ VTYSI++ G    G++  A +LF +M  + V P+V+T+G L+ G
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
                +  K +E+   +++  +
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKM 469



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 105/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + K+    L+   ++   GI  ++   N +        +   A+ +  ++ + G   DT 
Sbjct: 100 RTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTT 159

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I+GLC  G + ++V L   +    C+ D+  Y+ +++G+C+SG   +A ++   +
Sbjct: 160 TFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKM 219

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               + ADV TYS +I  L  DG +D A  LF +ME   +  +V+T+ +L+ G  +  + 
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    LL  M  + ++P+    ++++D+  K
Sbjct: 280 NDGALLLKDMVSREIVPNVITFNVLLDVFVK 310



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 110/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C++ +   A ++  +M  + +K DV  ++T+   L     ++ A  LF EM+  G
Sbjct: 199 IVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + +   TY   + GLCK G   +   L + +   +   ++  ++ L+D   K G+L+ A 
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    +  +++TY+ ++ G     ++ +A+++   M  N  +P+++TF +LI G+
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +      +++   + ++ ++ +A   SI+V
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 89/190 (46%), Gaps = 1/190 (0%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +V     L  G+ +I + + A  LF EM R         ++ F   + +       ++  
Sbjct: 53  NVCFRERLRSGIVDIKK-DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           + L +     +I   + +I+  C+  +   A  +   + +     D  T++ +I+GL  +
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLE 171

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++ KA  L   M EN   P+++T+ ++++G  R  + S   ++L KM+E+NV  D    
Sbjct: 172 GKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTY 231

Query: 210 SIVVDLLAKN 219
           S ++D L ++
Sbjct: 232 STIIDSLCRD 241


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 118/204 (57%), Gaps = 2/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK K ++ A+NL  EML K + PD V +N+L  GL +  ++  A  L +EM   
Sbjct: 258 IMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR 317

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TYT  +D LCKN  + ++  LF  ++    +  +  Y+ LIDGLCK GRL+ A
Sbjct: 318 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 377

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            ELF H L +G  + DV TY++MI GL  +G  D+A  +   ME+N   PN +TF  +I 
Sbjct: 378 QELFQHLLVKGCCI-DVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIR 436

Query: 180 GFIRINEPSKVIELLHKMKEKNVM 203
                +E  K  +LLH+M  K ++
Sbjct: 437 SLFEKDENDKAEKLLHEMIAKGLL 460



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 106/203 (52%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           ++L  +M  KGI+ ++V  + L      + Q+  +F L  ++ + G   +T T+T  + G
Sbjct: 30  ISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKG 89

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LC  G + + +     +     + +  +Y  L++GLCK+G    A++L   +       +
Sbjct: 90  LCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPN 149

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VV YS +I GL  D  +++A+DL+ +M+   + PNVIT+ TLI  F    +      LLH
Sbjct: 150 VVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLH 209

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +M  KN+ PD    SI++D L K
Sbjct: 210 EMILKNINPDVYTFSILIDALCK 232



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 38/275 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C   ++  + +L  ++L  G  P+ +   TL  GL    +V++     D++   
Sbjct: 50  ILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQ 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK------- 113
               +  +Y   ++GLCK G    +++L R +       ++  YS +IDGLCK       
Sbjct: 110 AFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEA 169

Query: 114 ----------------------------SGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                       +G+L  A  L H +    +  DV T+SI+I  
Sbjct: 170 YDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDA 229

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  +G+   A  +F  M +  V PNV ++  +I+G  +     + + LL +M  KN++PD
Sbjct: 230 LCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPD 287

Query: 206 ASIVSIVVDLLAKNEISLNSLPSFT-VHERQEEVD 239
               + ++D L K+    ++L     +H R +  D
Sbjct: 288 TVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPAD 322



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 73/149 (48%)

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           +  L K  Y +  + L + + +   E ++   S LI+  C  G++  +  L   + +   
Sbjct: 17  LGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGY 76

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             + +T++ ++ GL   G++ K       +   A   N +++GTL++G  +  E    I+
Sbjct: 77  XPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIK 136

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           LL  +++++  P+  + S ++D L K+++
Sbjct: 137 LLRMIEDRSTRPNVVMYSAIIDGLCKDKL 165


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 129/220 (58%), Gaps = 5/220 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK + I+ A  ++ EM  +G+ P+   +NTL  G ++     +  +LF +M   
Sbjct: 85  ILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWK-----QKIQLFKDMHAQ 139

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY+IF+ GL K GY+ +++ELFR ++      D+  Y+ LID +CKSG+LE A
Sbjct: 140 GCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDA 199

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    L+ DV +++ +I GL  +G +D+A+  F  ME +   P+  ++  ++ G
Sbjct: 200 RELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRG 259

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F++ N  S+  +L  +M ++    DA   ++  DLL+K++
Sbjct: 260 FLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSKDD 299



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 5/234 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +I  A  +   M+ KG++P+ V +++L  G    ++V  A K+F+ M   
Sbjct: 15  ILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKVFNAMITR 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y I I+G CK   I E+ ++F  +       +   Y+ L+ G  K       
Sbjct: 75  GCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWKQ-----K 129

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  +       D+VTYSI +HGL   G +D+A +LF +M+ N + P+++ +  LI  
Sbjct: 130 IQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDA 189

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
             +  +     EL  K+  K ++PD    + ++  L +  +   +  +F   ER
Sbjct: 190 MCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMER 243



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 5/198 (2%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M S  I PD V  N L   L +  ++  A  +   M   GV  +T TY+  ++G      
Sbjct: 1   MTSFIIMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + E+ ++F  +    C  D+ +Y+ LI+G CK+ R++ A ++F  +    L+ +  TY+ 
Sbjct: 61  VFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++ G +      +   LF DM     +P+++T+   +HG  +     + +EL  +M+   
Sbjct: 121 LLGGFWK-----QKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNY 175

Query: 202 VMPDASIVSIVVDLLAKN 219
           + PD  I +I++D + K+
Sbjct: 176 LNPDLVIYNILIDAMCKS 193


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 2/237 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC  K ++  + ++  +  +G+  + V ++ L  G  +  +++ A +LF EM   G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I +DGLC NG + +++E+F  L+  K +L I  Y+ +I+G+CK G++E A 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF SLP   +  +V+TY++MI GL   G + +A+ L   MEE+  APN  T+ TLI   
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL--AKNEISLNSLPSFTVHERQE 236
           +R  + +   +L+ +MK      DAS + +V+D+L  A   ++L    S     RQ+
Sbjct: 554 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQD 610



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+  +   A ++  +++  G +PD    NTL  GLF   +V  A  L D M  +
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++G+C++G    +++L R +     + D+  YS +ID LC+ G ++ A
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +    + + VVTY+ ++ GL   G+ +    L  DM    + PNVITF  L+  
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F++  +  +  EL  +M  + + P+    + ++D
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G     ++  A+ L   M+  G +PDVV +N++  G+        A  L  +M+   
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY+  ID LC++G I  ++ LF+ +     +  +  Y+ L+ GLCK+G+     
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +V +V+T+++++     +G++ +A++L+ +M    ++PN+IT+ TL+ G+
Sbjct: 284 LLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              N  S+   +L  M      PD
Sbjct: 344 CMQNRLSEANNMLDLMVRNKCSPD 367



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 109/199 (54%), Gaps = 2/199 (1%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G CK  K  +GAL L  +M+S+ I P+V+  N L     +  +++ A +L+ EM   
Sbjct: 269 LVRGLCKAGKWNDGAL-LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY   +DG C    + E+  +   +   KC  DI  ++ LI G C   R++  
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F ++ +  LVA+ VTYSI++ G    G++  A +LF +M  + V P+V+T+G L+ G
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447

Query: 181 FIRINEPSKVIELLHKMKE 199
                +  K +E+   +++
Sbjct: 448 LCDNGKLEKALEIFEDLQK 466



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C++ +   AL+L  +M  + +K DV  ++T+   L     ++ A  LF EM+  G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + +   TY   + GLCK G   +   L + +   +   ++  ++ L+D   K G+L+ A 
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    +  +++TY+ ++ G     ++ +A+++   M  N  +P+++TF +LI G+
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +      +++   + ++ ++ +A   SI+V
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 104/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + K+    L+   ++   GI  ++   N +        +   A+ +  ++ + G   DT 
Sbjct: 100 RTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTT 159

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I GL   G + E+V L   +    C+ D+  Y+ +++G+C+SG   +AL+L   +
Sbjct: 160 TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM 219

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               + ADV TYS +I  L  DG +D A  LF +ME   +  +V+T+ +L+ G  +  + 
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    LL  M  + ++P+    ++++D+  K
Sbjct: 280 NDGALLLKDMVSREIVPNVITFNVLLDVFVK 310



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +V     L  G+ +I + + A  LF EM R         ++ F   + +       ++  
Sbjct: 53  NVCFRERLRSGIVDIKK-DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           + L +     +I   + +I+  C+  +   A  +   + +     D  T++ +I GL+ +
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++ +A  L   M EN   P+V+T+ ++++G  R  + S  ++LL KM+E+NV  D    
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231

Query: 210 SIVVDLLAKN 219
           S ++D L ++
Sbjct: 232 STIIDSLCRD 241


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 2/237 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC  K ++  + ++  +  +G+  + V ++ L  G  +  +++ A +LF EM   G
Sbjct: 364 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 423

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I +DGLC NG + +++E+F  L+  K +L I  Y+ +I+G+CK G++E A 
Sbjct: 424 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 483

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF SLP   +  +V+TY++MI GL   G + +A+ L   MEE+  APN  T+ TLI   
Sbjct: 484 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 543

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL--AKNEISLNSLPSFTVHERQE 236
           +R  + +   +L+ +MK      DAS + +V+D+L  A   ++L    S     RQ+
Sbjct: 544 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQD 600



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+  +   A ++  +++  G +PD    NTL  GLF   +V  A  L D M  +
Sbjct: 118 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++G+C++G    +++L R +     + D+  YS +ID LC+ G ++ A
Sbjct: 178 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 237

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +    + + VVTY+ ++ GL   G+ +    L  DM    + PNVITF  L+  
Sbjct: 238 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 297

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F++  +  +  EL  +M  + + P+    + ++D
Sbjct: 298 FVKEGKLQEANELYKEMITRGISPNIITYNTLMD 331



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G     ++  A+ L   M+  G +PDVV +N++  G+        A  L  +M+   
Sbjct: 154 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 213

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY+  ID LC++G I  ++ LF+ +     +  +  Y+ L+ GLCK+G+     
Sbjct: 214 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 273

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +V +V+T+++++     +G++ +A++L+ +M    ++PN+IT+ TL+ G+
Sbjct: 274 LLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 333

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              N  S+   +L  M      PD
Sbjct: 334 CMQNRLSEANNMLDLMVRNKCSPD 357



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 2/202 (0%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G CK  K  +GAL L  +M+S+ I P+V+  N L     +  +++ A +L+ EM   
Sbjct: 259 LVRGLCKAGKWNDGAL-LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 317

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY   +DG C    + E+  +   +   KC  DI  ++ LI G C   R++  
Sbjct: 318 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 377

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F ++ +  LVA+ VTYSI++ G    G++  A +LF +M  + V P+V+T+G L+ G
Sbjct: 378 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 437

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
                +  K +E+   +++  +
Sbjct: 438 LCDNGKLEKALEIFEDLQKSKM 459



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C++ +   AL+L  +M  + +K DV  ++T+   L     ++ A  LF EM+  G
Sbjct: 189 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 248

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + +   TY   + GLCK G   +   L + +   +   ++  ++ L+D   K G+L+ A 
Sbjct: 249 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 308

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    +  +++TY+ ++ G     ++ +A+++   M  N  +P+++TF +LI G+
Sbjct: 309 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 368

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +      +++   + ++ ++ +A   SI+V
Sbjct: 369 CMVKRVDDGMKVFRNISKRGLVANAVTYSILV 400



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 104/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + K+    L+   ++   GI  ++   N +        +   A+ +  ++ + G   DT 
Sbjct: 90  RTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTT 149

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I GL   G + E+V L   +    C+ D+  Y+ +++G+C+SG   +AL+L   +
Sbjct: 150 TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM 209

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               + ADV TYS +I  L  DG +D A  LF +ME   +  +V+T+ +L+ G  +  + 
Sbjct: 210 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 269

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    LL  M  + ++P+    ++++D+  K
Sbjct: 270 NDGALLLKDMVSREIVPNVITFNVLLDVFVK 300



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +V     L  G+ +I + + A  LF EM R         ++ F   + +       ++  
Sbjct: 43  NVCFRERLRSGIVDIKK-DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 101

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           + L +     +I   + +I+  C+  +   A  +   + +     D  T++ +I GL+ +
Sbjct: 102 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 161

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++ +A  L   M EN   P+V+T+ ++++G  R  + S  ++LL KM+E+NV  D    
Sbjct: 162 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 221

Query: 210 SIVVDLLAKN 219
           S ++D L ++
Sbjct: 222 STIIDSLCRD 231



 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A +L  EM + G+A +T TY+  IDG CK   + E+ ++   L + K + DI+    L+ 
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQML-DLMVTKGDSDIRY---LLA 773

Query: 110 GLCKSGRLEIALELFHSLP 128
           GL +  R     E + +LP
Sbjct: 774 GLMRKKRKGSETEGWENLP 792


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 129/219 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGY + K+I+ A+ +  E+  KG+KP +V  N L  GLFE+ + + A   FDEM   
Sbjct: 358 ILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSA 417

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   + G  KNG + E++  F  L   + + +IQ Y+ +IDGLCK+G+L+ A
Sbjct: 418 GHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKA 477

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  LP   L  DV+TY+ MI G   +G +D+A D+   ME+N    +  T+  ++ G
Sbjct: 478 HATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRG 537

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F+R N+ S++   L ++  K+   +A+ V +++D++A++
Sbjct: 538 FLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAED 576



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 121/237 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ +CK+  ++GA +L +EM  K I PD+  ++TL   L ++ Q E    LF EM   
Sbjct: 218 IVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHL 277

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+   IDGLCK G + ++ E+ R +     + D+  Y+ +IDG    G+++ A
Sbjct: 278 NIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRA 337

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F S+    +  D+++Y+I+I+G     ++D+A  +  ++ +  + P+++T   L+HG
Sbjct: 338 REIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHG 397

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
              +           +M     +PD      ++    KN +   ++  F   ER+ E
Sbjct: 398 LFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE 454



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G     +++ A++L+ +++ + I +P+ V++ T+  GL +    ++AF L   M++ 
Sbjct: 148 LIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQG 207

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +TRTYTI ID  CK+G +  +  L   ++      DI  YS LID LCK  + E  
Sbjct: 208 STKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENV 267

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  +V T++ +I GL  +G+++ A ++   M E  V P+VIT+  +I G
Sbjct: 268 RTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDG 327

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +    +  +  E+   M  K++ PD    +I+++  A+ +
Sbjct: 328 YGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQK 367



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  C     +   ++ +    KGI  + V   TL  GLF  ++V+ A  LF ++ R+
Sbjct: 112 IVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRE 171

Query: 61  GVAADTRT-YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +       Y   ++GLCK G+  ++ +L R +     + + + Y+ +ID  CK G L+ 
Sbjct: 172 NICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDG 231

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L + + +  +  D+ TYS +I  L    Q +    LFL+M    + PNV TF ++I 
Sbjct: 232 ATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVID 291

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  +  +     E++  M EK V PD    ++++D
Sbjct: 292 GLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIID 326



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 121/257 (47%), Gaps = 36/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  ++E A  +   M+ KG+ PDV+ +N +  G     QV+RA ++FD M    
Sbjct: 289 VIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKS 348

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-------RILKCEL--------------- 99
           +  D  +Y I I+G  +   I E++++ R +        I+ C +               
Sbjct: 349 IEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQ 408

Query: 100 -------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+  +  L+ G  K+G +E A+  FH L R     ++  Y+ +I GL
Sbjct: 409 NFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGL 468

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++DKAH  F  +    + P+VIT+  +I G+ +     +  ++L KM++   + D 
Sbjct: 469 CKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADN 528

Query: 207 SIVSIVV-DLLAKNEIS 222
              +++V   L  N++S
Sbjct: 529 RTYNVIVRGFLRSNKVS 545


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 127/220 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+N ++ GAL + +EM+ +G   DVV +NTL  GL     ++ A +LF EM   
Sbjct: 404 ILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVER 463

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T T  I G CK+G + +++ LF T+ +   + D+  Y+ L+DG CK G +E A
Sbjct: 464 GVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKA 523

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL++ +    +    +++SI+I+G  + G + +A  L+ +M+E  + P ++T  T+I G
Sbjct: 524 KELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKG 583

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++R    SK  + L+ M  + V PD    + +++   K E
Sbjct: 584 YLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEE 623



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 122/210 (58%), Gaps = 4/210 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAAD 65
           C+ +++  A  +++EML +G+ PD++  +++ +G+F  + ++ RA   F++M+  G+  D
Sbjct: 340 CRKEDVWEAERVFNEMLQRGVVPDLISFSSI-VGVFSRNGELGRALAYFEKMKGVGLVPD 398

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
           T  YTI I+G C+N  +  ++++   +    C +D+  Y+ L++GLC+   L+ A ELF 
Sbjct: 399 TVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFK 458

Query: 126 SL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
            +  RGV   D  T + +IHG   DG M KA  LF  M   ++ P+V+T+ TL+ GF ++
Sbjct: 459 EMVERGVF-PDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKV 517

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            E  K  EL + M  + + P     SI+++
Sbjct: 518 GEMEKAKELWYDMISREIFPSYISFSILIN 547



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 124/232 (53%), Gaps = 3/232 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK+  +  AL+L+  M  + +KPDVV +NTL  G  ++ ++E+A +L+ +M    
Sbjct: 475 LIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISRE 534

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     +++I I+G C  G + E+  L+  ++    +  +   + +I G  ++G L  A 
Sbjct: 535 IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAN 594

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +  +++    +  D +TY+ +I+    +   D+A  L  +MEE  + PN++T+  ++ GF
Sbjct: 595 DFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGF 654

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
            R     +   +LHKM +K + PD S  + +++     +   N   +F VH+
Sbjct: 655 SRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKD---NMKEAFRVHD 703



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK    E A  +  EML  G+ P+    N + +       V  A ++F+EM + G
Sbjct: 300 LINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRG 359

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  +    +NG +  ++  F  ++ +    D   Y+ LI+G C++  +  AL
Sbjct: 360 VVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGAL 419

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +     V DVVTY+ +++GL     +D A +LF +M E  V P+  T  TLIHG+
Sbjct: 420 KMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGY 479

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +K + L   M  +++ PD    + ++D   K
Sbjct: 480 CKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCK 516



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 101/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N YC+   +  A  L   M  KG+KP +  +N L  GL +    ERA ++ DEM   G
Sbjct: 265 LVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVG 324

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +   C+   + E+  +F  +       D+ ++S ++    ++G L  AL
Sbjct: 325 LCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRAL 384

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    LV D V Y+I+I+G   +  +  A  +  +M E     +V+T+ TL++G 
Sbjct: 385 AYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGL 444

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R        EL  +M E+ V PD   ++ ++
Sbjct: 445 CRGKMLDDADELFKEMVERGVFPDFYTLTTLI 476



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  E+E A  L+ +M+S+ I P  +  + L  G   +  V  AF+L+DEM+  G
Sbjct: 510 LMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKG 569

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T    I G  + G + ++ +   T+       D   Y+ LI+   K    + A 
Sbjct: 570 IKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAF 629

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L +++    L+ ++VTY+ ++ G    G+M +A  +   M +  + P+  T+ +LI+G+
Sbjct: 630 FLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGY 689

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +  +   +   +  +M ++  +PD
Sbjct: 690 VSKDNMKEAFRVHDEMLQRGFVPD 713



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 100/219 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y + +++      +  +  +G    +   N L   + ++  V+ A+K++++  + 
Sbjct: 159 LLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKS 218

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T  I ++ LCK+G +         +       D+  Y+ L++  C+ G +  A
Sbjct: 219 GNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEA 278

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    L   + TY+ +I+GL  +G  ++A  +  +M    + PN  TF  ++  
Sbjct: 279 FGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVE 338

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R  +  +   + ++M ++ V+PD    S +V + ++N
Sbjct: 339 SCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRN 377



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/178 (18%), Positives = 80/178 (44%), Gaps = 2/178 (1%)

Query: 31  VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
           VV+ + L     +  ++    + F  +++ G           +  + K G++  + +++ 
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLE-IALELFHSLPRGVLVADVVTYSIMIHGLYND 149
                   +++   + +++ LCK G+L+ + + L     +GV  AD+VTY+ +++     
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGV-YADLVTYNTLVNAYCRR 272

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
           G + +A  L   M    + P + T+  LI+G  +     +   +L +M    + P+A+
Sbjct: 273 GLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAA 330



 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 35/66 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+ ++  ++ A  +  +M+ KGI PD   + +L  G      ++ AF++ DEM + G
Sbjct: 650 ILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRG 709

Query: 62  VAADTR 67
              D +
Sbjct: 710 FVPDDK 715


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 125/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+ K +  A+    EM++ G+ P++V  NTL  G  +  +   A +LF  M + G
Sbjct: 364 LIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHG 423

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D +T  I +DGL K  +  E++ LFR L  +  +LDI  YS +++G+C SG+L  AL
Sbjct: 424 QLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDAL 483

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  L    +  DVVTY+IMI+GL  +G +D A DL + MEEN   P+  T+   + G 
Sbjct: 484 ELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 543

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R  E SK  + L  MK K    +A+   ++++  + N+
Sbjct: 544 LRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFSANK 582



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +  A +L+S+M  KGI+PD+  +N L  GL    + + A  L   M R G
Sbjct: 224 VVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKG 283

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +T+ +      K G I  +  +F  +  +  E D+  YS +I   C   +++ A+
Sbjct: 284 IMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAM 343

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R   + ++VTY+ +IHG      M+KA     +M  N + PN++T+ TLI GF
Sbjct: 344 EVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGF 403

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +P    EL   M +   +PD    +I++D L K
Sbjct: 404 CKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFK 440



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K    A++L   M   G+KP+V  HN +   L  ++     F +   M + GV     
Sbjct: 90  KMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIV 149

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+T  ++GLC  G + +++     L+ +  E D      +I+GLCK G    AL     +
Sbjct: 150 TFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKM 209

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV  Y+ ++ GL  DG + +A DLF  M    + P++ T+  LIHG    +  
Sbjct: 210 EEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRW 269

Query: 188 SKVIELLHKMKEKNVMPDASIVSIV 212
            +   LL  M  K +MPD    +++
Sbjct: 270 KEAAPLLANMMRKGIMPDVQTFNVI 294



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 4/215 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+        ++   M   G++P +V   T+  GL     V +A +  D ++  
Sbjct: 118 IVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDM 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  +D  T    I+GLCK G+   ++   + +    C LD+ AY+ ++DGLCK G +  A
Sbjct: 178 GYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEA 237

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    +  D+ TY+ +IHGL N  +  +A  L  +M    + P+V TF  +   
Sbjct: 238 WDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGR 297

Query: 181 FIRINEPSKVIELL----HKMKEKNVMPDASIVSI 211
           F++    S+   +     H   E +V+  +SI+ +
Sbjct: 298 FLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGV 332



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C    +  A+     +   G + D      +  GL ++     A     +M+   
Sbjct: 154 IVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQN 213

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   +DGLCK+G + E+ +LF  +     + D+  Y+CLI GLC   R + A 
Sbjct: 214 CNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAA 273

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++ R  ++ DV T++++       G + +A  +F  M    +  +V+T+ ++I   
Sbjct: 274 PLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVH 333

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             +N+    +E+   M  K  +P+
Sbjct: 334 CMLNQMKDAMEVFDLMIRKGCLPN 357



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 100/213 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C     + A  L + M+ KGI PDV   N +     +   + RA  +F  M   G
Sbjct: 259 LIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMG 318

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I   C    + +++E+F  +    C  +I  Y+ LI G C+   +  A+
Sbjct: 319 IEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAM 378

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  ++VT++ +I G    G+   A +LF  M ++   P++ T   ++ G 
Sbjct: 379 YFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGL 438

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + +  S+ + L  ++++ N   D  I SI+++
Sbjct: 439 FKCHFHSEAMSLFRELEKMNSDLDIIIYSIILN 471



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG C + ++  AL L+S + SKG+K DVV +N +  GL +   ++ A  L  +M+ +
Sbjct: 468 IILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEEN 527

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVE 87
           G   D  TY +F+ GL +   I +S +
Sbjct: 528 GCPPDECTYNVFVQGLLRRYEISKSTK 554



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G  K      A++L+ E+       D++I++ +  G+    ++  A +LF  +   
Sbjct: 433 IILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSK 492

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY I I+GLCK G + ++ +L   +    C  D   Y+  + GL +   +  +
Sbjct: 493 GVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKS 552

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
            +    +      A+  T  ++I+  ++  + ++A  +FL
Sbjct: 553 TKYLMFMKGKGFRANATTTKLLIN-YFSANKENRAFQVFL 591



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 35/221 (15%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K ++ AL+ Y +M++    P V   N LF  + ++     A  L   M   GV  +  T+
Sbjct: 57  KSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTH 116

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
            I I+ LC+   +  +V  F  L ++                      +I +E       
Sbjct: 117 NIVINCLCR---LNHTVFGFSVLGLM---------------------FKIGVE------- 145

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                 +VT++ +++GL  +G + +A      +++     +  T G +I+G  ++   S 
Sbjct: 146 ----PSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSA 201

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
            +  L KM+E+N   D +  + VVD L K+ +   +   F+
Sbjct: 202 ALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFS 242


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 124/215 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K ++  + L+ EM  +G+  + V + TL  G F+  + + A  +F +M  DG
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I +DGLC NG +  ++ +F  L+  K E DI  Y+ +I+G+CK+G++E   
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGW 521

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +VVTY+ M+ G    G  ++A  LF +M+E    P+  T+ TLI   
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAH 581

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS + +V ++L
Sbjct: 582 LRDGDKAASAELIREMRSCRFVGDASTIGLVTNML 616



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C  K +  ALNL++EM +KGI+P+VV +N+L   L    +   A +L  +M    
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T++  ID   K G +VE+ +L+  +     + DI  YS LI+G C   RL+ A 
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 381

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       +VVTY+ +I G     ++D+  +LF +M +  +  N +T+ TLIHGF
Sbjct: 382 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
            +  E      +  +M    V+PD    SI++D L  N     +L  F   +R +
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 13/237 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    I  A++L  +M+  G +PD    NTL  GLF  ++   A  L D M   G
Sbjct: 157 LLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ++GLCK G I  ++ L + +   K E  +  Y+ +ID LC    +  AL
Sbjct: 217 CQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDAL 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTY+ +I  L N G+   A  L  DM E  + PNV+TF  LI  F
Sbjct: 277 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 336

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           ++  +  +  +L  +M ++++ PD    S +++              F +H+R +E 
Sbjct: 337 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 380



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL + ++M+  G +PD+V  N+L  G    +++  A  L  +M   
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+ T+   I GL ++    E+V L   + +  C+ D+  Y  +++GLCK G +++A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +G +   VV Y+ +I  L N   ++ A +LF +M+   + PNV+T+ +LI  
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + P+    S ++D   K
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 108/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK  +I+ AL+L  +M    I+P VVI+NT+   L     V  A  LF EM   
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I  LC  G   ++  L   +   K   ++  +S LID   K G+L  A
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  + +  +  D+ TYS +I+G     ++D+A  +F  M      PNV+T+ TLI G
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +     + +EL  +M ++ ++ +    + ++
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 109/220 (49%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A+NL+ +M+     P +V  + L   + ++++ +    L ++MQ  G++ +  TY+
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   +  ++ +   +  L  E DI   + L++G C   R+  A+ L   +   
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D  T++ +IHGL+   +  +A  L   M      P+++T+G +++G  +  +    
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           + LL KM++  + P   I + ++D L   +   ++L  FT
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFT 280



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N ++E AL ++  +    ++PD+  +N +  G+ +  +VE  + LF  +   
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TYT  + G C+ G   E+  LFR ++      D   Y+ LI    + G    +
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAAS 590

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            EL   +     V D  T  ++ + L+ DG++DK+   FL M
Sbjct: 591 AELIREMRSCRFVGDASTIGLVTNMLH-DGRLDKS---FLKM 628


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI+G CKN E + A  L+  M S    P +V +NTL  GLF   ++ERA  LF EM    
Sbjct: 120 LIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR 179

Query: 58  ---QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
                D  + +  TY++ IDGLCK   + ++VEL  +++   C  D+  Y+ L+DGLCK 
Sbjct: 180 SHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 239

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            ++  A E+   +     V ++VTY+ ++HGL    ++  A  L  DM      PNV+T+
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GTLI G  ++        +L  M +K   PD  I +++++ L K +
Sbjct: 300 GTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 345



 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   ++ A  + ++M+ KG  PD++I+N L  GL +  QV+ +  L       G
Sbjct: 302 LIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 361

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I GLC++  + E+  L   ++   C  D+  YS LIDGLCK+G+++ A 
Sbjct: 362 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 421

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +      ADVVTYS +I GL   G++D+AH L   M      P+ +T+ +LI G 
Sbjct: 422 DLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +N   + IEL+ +M+  N  P A   +I++  + + E
Sbjct: 482 CDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 520



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C+  EI+ A   + EM SK + P+V + + L  GL +  +   A + F  MQ  G
Sbjct: 15  LLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSG 74

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ADT  YT  + GL K   + +++ +   +R   CE ++  Y+ LIDGLCK+   + A 
Sbjct: 75  IVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQ 134

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-------EENAVAPNVITF 174
           ELF  +        +VTY+ ++ GL+  G++++A  LF +M        ++  +PNVIT+
Sbjct: 135 ELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITY 194

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             LI G  + N  S+ +ELL  MK +   PD    +I+VD L K
Sbjct: 195 SVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCK 238



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 118/213 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ ++ L    +S GIKPDVV ++++  GL   ++++ A +L   ++  
Sbjct: 336 MLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR 395

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  IDGLCK G + E+ +L+  +    C+ D+  YS LIDGLCK+GR++ A
Sbjct: 396 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEA 455

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R       +TY+ +I GL +   +D+A +L  +ME +  AP+ +T+  LIHG
Sbjct: 456 HLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHG 515

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             R+      + LL + K + V    + +  + 
Sbjct: 516 MCRMERVDSAVVLLEQAKARCVAAGGTALDTIA 548



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 121/260 (46%), Gaps = 42/260 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK K    AL  +  M   GI  D VI+  L  GL++  ++++A  +  EM+  
Sbjct: 49  ILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDH 108

Query: 61  GVAADTRTYTIFIDGLCKNGYI---------VESVE--------------LFRTLRIL-- 95
           G   +  TY   IDGLCKN            ++SVE              LFRT ++   
Sbjct: 109 GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERA 168

Query: 96  -----------------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138
                            +C  ++  YS LIDGLCK+ R+  A+EL  S+       DV+T
Sbjct: 169 MALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVIT 228

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           Y+I++ GL  + ++  A ++  +M +    PN++T+ +L+HG  R    S  + L+  M 
Sbjct: 229 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 288

Query: 199 EKNVMPDASIVSIVVDLLAK 218
            +   P+      ++D L K
Sbjct: 289 CRGCTPNVVTYGTLIDGLCK 308



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   +  A+ L   M ++G  PDV+ +  L  GL +  +V  A+++  EM   
Sbjct: 196 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA 255

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   + GLC+   + +++ L R +    C  ++  Y  LIDGLCK GR++ A
Sbjct: 256 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 315

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D++ Y+++I+GL    Q+D++  L        + P+V+T+ ++I+G
Sbjct: 316 CAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYG 375

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   +   LL  +K +   PD  + S ++D L K
Sbjct: 376 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 413



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-------IKPDVVIHNTLFIGLFEIHQVERAFKLF 54
           L++G  +  ++E A+ L+ EML +          P+V+ ++ L  GL + ++V +A +L 
Sbjct: 155 LLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELL 214

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           + M+  G + D  TYTI +DGLCK   +  + E+ R +    C  ++  Y+ L+ GLC++
Sbjct: 215 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRA 274

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            R+  AL L   +       +VVTY  +I GL   G++  A  +  DM +    P+++ +
Sbjct: 275 RRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIY 334

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             LI+G  + ++  + I LL +     + PD    S V+  L ++
Sbjct: 335 NMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS 379



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 5/185 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A +LY  M   G   DVV ++TL  GL +  +V+ A  L   M R G
Sbjct: 407 LIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 466

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T TY   I GLC   ++ E++EL   +    C      Y+ LI G+C+  R++ A+
Sbjct: 467 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAV 526

Query: 122 ELF-----HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            L        +  G    D + YS +I GL   G++ +A D F +M +N V P+ IT+  
Sbjct: 527 VLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSI 586

Query: 177 LIHGF 181
           L+ G 
Sbjct: 587 LLEGL 591



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   ++ A  L + M+  G  P  + +N+L  GL +++ ++ A +L +EM+R  
Sbjct: 442 LIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSN 501

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-----RTLRILKCELDIQAYSCLIDGLCKSGR 116
            A    TY I I G+C+   +  +V L      R +      LD  AYS LIDGLCK+GR
Sbjct: 502 CAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGR 561

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
           +  AL+ F  +    ++ D +TYSI++ GL     + +   L LD
Sbjct: 562 VAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLD 606



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 35/158 (22%)

Query: 97  CELDIQAYSCLI-----------------------------------DGLCKSGRLEIAL 121
           C+ D+  Y+ L+                                   DGLCK+ R   AL
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F ++    +VAD V Y+ ++ GL+ + ++D+A  +  +M ++   PNV+T+ +LI G 
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + NEP +  EL   MK     P     + ++D L + 
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRT 162



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
           P+V T+  L+ GF R  E  +      +M+ KN++P+  + SI++D L K + S+++L  
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 229 FTVHE 233
           F   +
Sbjct: 67  FRAMQ 71


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 124/218 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK   I+  L L+ +M  +G+  D V +NTL  G  E+ ++E A +LF EM   
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  +Y I +DGLC NG   +++E+F  +   K ELDI  Y+ +I G+C + +++ A
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 511

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF SLP   +  DV TY+IMI GL   G + +A  LF  MEE+  +PN  T+  LI  
Sbjct: 512 WDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   + +K  +L+ ++K      DAS +   +  LA+
Sbjct: 572 HLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLAR 609



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 116/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +++ A ++   M+SKG  P++   N L  G  + + ++   +LF +M   G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V ADT TY   I G C+ G +  + ELF+ +   +   DI +Y  L+DGLC +G  E AL
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  +  D+  Y+I+IHG+ N  ++D A DLF  +    V P+V T+  +I G 
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    S+   L  KM+E    P+    +I++
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  ++  A  L+ EM+ +GI PD V + +L  G  + +Q+++A  + D M   G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + RT+ I I+G CK   I + +ELFR + +     D   Y+ LI G C+ G+LE+A 
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    +  D+V+Y I++ GL ++G+ +KA ++F  +E++ +  ++  +  +IHG 
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++     +L   +  K V PD    +I++  L K
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCK 539



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 35/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------ 54
           I+I+G CK+  ++ A NL++EM  KG K D++I+ TL  G     + +   KL       
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 55  -----------------------------DEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                         EM + G++ DT TYT  IDG CK   + ++
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             +   +    C  +I+ ++ LI+G CK+  ++  LELF  +    +VAD VTY+ +I G
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G+++ A +LF +M    V P+++++  L+ G     EP K +E+  K+++  +  D
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 206 ASIVSIVV 213
             I +I++
Sbjct: 492 IGIYNIII 499



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  AL L   M+  G KP ++  N L  GL    +V  A  L D M   G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +  +CK+G    ++EL R +   K +LD   YS +IDGLCK G L+ A 
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +      AD++ Y+ +I G    G+ D    L  DM +  + P+V+ F  LI  F
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  EL  +M ++ + PD    + ++D   K
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 116/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C N ++  A+ L   M+  G +P+ V +  +   + +  Q   A +L  +M+   
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+I IDGLCK+G +  +  LF  + I   + DI  Y+ LI G C +GR +   
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  DVV +S +I     +G++ +A +L  +M +  ++P+ +T+ +LI GF
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            + N+  K   +L  M  K   P+    +I+++   K  +  + L  F
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELF 410



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 101/200 (50%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+ +   A+ L  +M  + IK D V ++ +  GL +   ++ AF LF+EM+  G  AD 
Sbjct: 223 CKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YT  I G C  G   +  +L R +   K   D+ A+S LID   K G+L  A EL   
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  +  D VTY+ +I G   + Q+DKA+ +   M      PN+ TF  LI+G+ + N 
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 187 PSKVIELLHKMKEKNVMPDA 206
               +EL  KM  + V+ D 
Sbjct: 403 IDDGLELFRKMSLRGVVADT 422



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+ +++  A +   +++  G +PD V  +TL  GL    +V  A +L D M   
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T    ++GLC NG + ++V L   +     + +   Y  ++  +CKSG+  +A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +    +  D V YSI+I GL  DG +D A +LF +ME      ++I + TLI G
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F          +LL  M ++ + PD    S ++D   K
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 24/245 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N E E AL ++ ++    ++ D+ I+N +  G+    +V+ A+ LF  +   
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------RILKCELDIQAY 104
           GV  D +TY I I GLCK G + E+  LFR +                R    E D    
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581

Query: 105 SCLIDGLCKSG------RLEIALELFHSLPRGVLVADVVTYSIMIHG--LYNDGQMDKAH 156
           + LI+ + + G       L  AL     + +     DV T++ ++    L  +  +  A 
Sbjct: 582 AKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAP 641

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            LF +M+     PNV+T+ T+I G +  N  S+V  +L +M E+   P+A   S  +  L
Sbjct: 642 TLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGL 701

Query: 217 AKNEI 221
            K ++
Sbjct: 702 CKQDL 706



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 102/205 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+ EM     +P ++  + LF  +    Q +    L  +M+  G+A +  T +I I+
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C+   +  +      +  L  E D   +S LI+GLC  GR+  ALEL   +       
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            ++T + +++GL  +G++  A  L   M E    PN +T+G ++    +  + +  +ELL
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            KM+E+ +  DA   SI++D L K+
Sbjct: 236 RKMEERKIKLDAVKYSIIIDGLCKD 260



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 24/225 (10%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G C   +++ A +L+  +  KG+KPDV  +N +  GL +   +  A  LF +M+ D
Sbjct: 497 IIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--------------------RILKC--E 98
           G + +  TY I I      G   +S +L   +                    R+LK   E
Sbjct: 557 GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHE 616

Query: 99  LDIQAYSCLIDGLC--KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
            D+  ++ L+   C  ++  +  A  LF ++       +VVTY+ +I GL N   + +  
Sbjct: 617 PDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVP 676

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
            +   M E    PN +T  T I G  + +     I LL KM+  N
Sbjct: 677 GVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMENDN 721



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-------------GVAADTRTYTIFID 74
           K  V     L  G+ +I + + A  LF EM R               V A T+ Y + +D
Sbjct: 35  KGKVSYRERLRSGIVDIKE-DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLD 93

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            LCK   +        TL I+            I+  C+  +L +A      + +     
Sbjct: 94  -LCKQMELKGIAHNLYTLSIM------------INCCCRCRKLSLAFSAMGKIIKLGYEP 140

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VT+S +I+GL  +G++ +A +L   M E    P +IT   L++G     + S  + L+
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +M E    P+      V+ ++ K+
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKS 225


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 121/203 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CKNK ++ ALNL+ EM  K + P +V +++L  GL +  ++   + L DEM+  
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TY+  IDGLCKNG++  ++ LF  ++  +   +I  ++ L+DGLCK GRL+ A
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDA 463

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  L       +V TY++MI+G    G +++A  +   ME+N   PN  TF T+I  
Sbjct: 464 QEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIA 523

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
             + +E  K  +LL +M  + ++
Sbjct: 524 LFKKDENDKAEKLLRQMIARGLL 546



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 108/183 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +++ A ++ + ML   +KPDV+ ++TL  G F +++V++A  +F+ M   
Sbjct: 274 ILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TYTI I+G CKN  + E++ LF+ +        I  YS LIDGLCKSGR+   
Sbjct: 334 GVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYV 393

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +      ADV+TYS +I GL  +G +D+A  LF  M++  + PN+ TF  L+ G
Sbjct: 394 WDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDG 453

Query: 181 FIR 183
             +
Sbjct: 454 LCK 456



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   A+    ++  +  KPDVV++NT+   + +   V  A+ LF EM   G
Sbjct: 170 LINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++AD  TY   I G C  G + E++ L   + +     ++  Y+ L+D LCK G+++ A 
Sbjct: 230 ISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV+TYS ++ G +   ++ KA  +F  M    V P+V T+  LI+GF
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L  +M +KN++P     S ++D L K+
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM  KGI  DVV +NTL  G   + +++ A  L +EM    
Sbjct: 205 IIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKT 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE---------------------------------- 87
           +  +  TY I +D LCK G + E+                                    
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 88  -LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  + ++    D+  Y+ LI+G CK+  ++ AL LF  + +  +V  +VTYS +I GL
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++    DL  +M +     +VIT+ +LI G  +     + I L +KMK++ + P+ 
Sbjct: 385 CKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNI 444

Query: 207 SIVSIVVDLLAK 218
              +I++D L K
Sbjct: 445 FTFTILLDGLCK 456



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 118/234 (50%), Gaps = 1/234 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ AL+ + ++L++G + + V + TL  G+ +I     A K   ++    
Sbjct: 135 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRL 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   ID +CK   + E+  LF  + +     D+  Y+ LI G C  G+L+ A+
Sbjct: 195 TKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAI 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I++  L  +G++ +A  +   M +  V P+VIT+ TL+ G+
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
             + E  K   + + M    V PD    +I+++   KN++   +L  F  +H++
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQK 368



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ + K K    A++L   +  KGI+PD++  N L      + Q+   F +  ++ + G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T    I GLC  G + +++     L     +L+  +Y+ LI+G+CK G    A+
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAI 184

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +   +   DVV Y+ +I  +     + +A+ LF +M    ++ +V+T+ TLI+GF
Sbjct: 185 KFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGF 244

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +  + I LL++M  K + P+    +I+VD L K
Sbjct: 245 CIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 121/203 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CKNK ++ ALNL+ EM  K + P +V +++L  GL +  ++   + L DEM+  
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TY+  IDGLCKNG++  ++ LF  ++  +   +I  ++ L+DGLCK GRL+ A
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDA 463

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  L       +V TY++MI+G    G +++A  +   ME+N   PN  TF T+I  
Sbjct: 464 QEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIA 523

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
             + +E  K  +LL +M  + ++
Sbjct: 524 LFKKDENDKAEKLLRQMIARGLL 546



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 108/183 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +++ A ++ + ML   +KPDV+ ++TL  G F +++V++A  +F+ M   
Sbjct: 274 ILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TYTI I+G CKN  + E++ LF+ +        I  YS LIDGLCKSGR+   
Sbjct: 334 GVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYV 393

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +      ADV+TYS +I GL  +G +D+A  LF  M++  + PN+ TF  L+ G
Sbjct: 394 WDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDG 453

Query: 181 FIR 183
             +
Sbjct: 454 LCK 456



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +  GA+ L  ++  +  KP+V +++T+   L +   V  A+ LF EM   G
Sbjct: 170 LINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++AD  TY+  I G C  G + E++ L   + +     ++  Y+ L+D LCK G+++ A 
Sbjct: 230 ISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV+TYS ++ G +   ++ KA  +F  M    V P+V T+  LI+GF
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L  +M +KN++P     S ++D L K+
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM  KGI  DVV ++TL  G     +++ A  L +EM    
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE---------------------------------- 87
           +  +  TY I +D LCK G + E+                                    
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 88  -LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  + ++    D+  Y+ LI+G CK+  ++ AL LF  + +  +V  +VTYS +I GL
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++    DL  +M +     +VIT+ +LI G  +     + I L +KMK++ + P+ 
Sbjct: 385 CKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNI 444

Query: 207 SIVSIVVDLLAK 218
              +I++D L K
Sbjct: 445 FTFTILLDGLCK 456



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 1/234 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ AL+ + ++L++G + + V + TL  G+ +I     A KL  ++    
Sbjct: 135 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRL 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  ID LCK   + E+  LF  + +     D+  YS LI G C  G+L+ A+
Sbjct: 195 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I++  L  +G++ +A  +   M +  V P+VIT+ TL+ G+
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
             + E  K   + + M    V PD    +I+++   KN++   +L  F  +H++
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQK 368



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C   +I    ++ +++L +G  PD V  NTL  GL    QV++A    D++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+G+CK G    +++L R +     + +++ YS +ID LCK   +  A
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEA 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    + ADVVTYS +I+G   +G++ +A  L  +M    + PNV T+  L+  
Sbjct: 219 YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +   +L  M +  V PD    S ++D
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ + K K    A++L   +  KGI+PD++  N L      + Q+   F +  ++ + G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T    I GLC  G + +++     L     +L+  +Y+ LI+G+CK G    A+
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAI 184

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +   +   +V  YS +I  L     + +A+ LF +M    ++ +V+T+ TLI+GF
Sbjct: 185 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  + I LL++M  K + P+    +I+VD L K
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 35/173 (20%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           ++V  F  +  ++    I  ++ ++D   K      A+ L H L    +  D++T +I+I
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVIT------------------------------ 173
           +   + GQ+     +   + +    P+ +T                              
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 174 -----FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                + TLI+G  +I +    I+LL K+  +   P+  + S ++D L K ++
Sbjct: 162 LNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 214


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 123/205 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC  K I+ A  L++EM+ +G+ P+ V + TL     ++ ++  A +LF +M  +
Sbjct: 376 ILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN 435

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY++ ++G CK GY+ ++  LFR ++    + ++  Y+ LID +CKSG L  A
Sbjct: 436 GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  L    L  DV  Y+ +I+GL  +G +D+A + F  MEE+   PN  ++  +I G
Sbjct: 496 RKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRG 555

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F++  + S+ ++L+ +M++K  + D
Sbjct: 556 FLQHKDESRAVQLIGEMRDKGFVAD 580



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 113/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E   AL L+ +M+++G +PDV  + T+  GL ++ +   A  L  +M   G
Sbjct: 167 LINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVG 226

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  ID LCK+  + E++++F  ++       + +Y+ LI GLC   R + A 
Sbjct: 227 CQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEAS 286

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    ++ D+VT+S++I     +G + +A  +   M E  V PNVIT+ +L+HG+
Sbjct: 287 AMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGY 346

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               E  +  +L   M  +   PD    SI+++
Sbjct: 347 SLQMEVVEARKLFDVMITRGCKPDVFSYSILIN 379



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK++ +  AL+++S M +KGI P VV + +L  GL    + + A  + +EM    
Sbjct: 237 LIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN 296

Query: 62  VAADTRTYTIFIDGLCKNGYI-----------------------------------VESV 86
           +  D  T+++ ID  CK G +                                   VE+ 
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEAR 356

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF  +    C+ D+ +YS LI+G C   R++ A +LF+ +    L  + V+Y+ +IH  
Sbjct: 357 KLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAF 416

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++ +A +LF DM  N   P++ T+  L+ GF +     K   L   M+   + P+ 
Sbjct: 417 CQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNL 476

Query: 207 SIVSIVVDLLAKN 219
            + +I++D + K+
Sbjct: 477 VMYTILIDSMCKS 489



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           +  ++L  +M   G+ P+    N L      +  V+  F +  ++ + G+     T+T  
Sbjct: 108 DAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTL 167

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+GLCK G   +++ELF  +    C+ D+  Y+ +I+GLCK G    A  L   +     
Sbjct: 168 INGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGC 227

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             DVVTYS +I  L  D  +++A D+F  M+   ++P V+++ +LI G    +   +   
Sbjct: 228 QPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASA 287

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           +L++M   N+MPD    S+++D+  K
Sbjct: 288 MLNEMTSLNIMPDIVTFSLLIDIFCK 313



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 107/205 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C  + ++   ++ ++++  G++P ++   TL  GL +  +  +A +LFD+M   
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  I+GLCK G    +  L + +  + C+ D+  YS LID LCK   +  A
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +   VV+Y+ +I GL +  +  +A  +  +M    + P+++TF  LI  
Sbjct: 251 LDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDI 310

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F +     +   +L  M E  V P+
Sbjct: 311 FCKEGNVLEAQGVLKTMTEMGVEPN 335



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 112/233 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +CK   +  A  +   M   G++P+V+ +N+L  G     +V  A KLFD M   
Sbjct: 306 LLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITR 365

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y+I I+G C    I E+ +LF  +       +  +Y+ LI   C+ G+L  A
Sbjct: 366 GCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREA 425

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +     + D+ TYS+++ G    G + KA  LF  M+   + PN++ +  LI  
Sbjct: 426 RELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDS 485

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
             +    +   +L  ++    + PD  I + +++ L K  +   +L +F   E
Sbjct: 486 MCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKME 538



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 36/222 (16%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA-FKLFDEMQRDGVAADTRT 68
           + I+ AL  ++ ML +   P ++  N L   +  + Q   A   L  +M+  G++ +T  
Sbjct: 69  RNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNT-- 126

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
                                       C L+I     LI+  C    +++   +   + 
Sbjct: 127 ----------------------------CTLNI-----LINCFCLMQHVDLGFSVLAKVI 153

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           +  L   ++T++ +I+GL   G+  +A +LF DM      P+V T+ T+I+G  ++ E +
Sbjct: 154 KLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETA 213

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
               L+ KM E    PD    S ++D L K+ +   +L  F+
Sbjct: 214 AAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFS 255



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL  + +M   G  P+   +N +  G  +     RA +L  EM+  G
Sbjct: 517 IINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576

Query: 62  VAADTRT 68
             AD  T
Sbjct: 577 FVADEGT 583


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 126/210 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK K I+ A  L++EM+ +G  P+ V +NTL  GL ++ ++  A  LF  M  +
Sbjct: 260 ILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTN 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY I +DG CK GY+ ++  LFR ++    + ++  Y+ L++ +CKSG L+ A
Sbjct: 320 GNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDA 379

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    L  +V  Y+ +I+GL  +G +D+A + F +ME++   P+  ++  +I G
Sbjct: 380 RELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRG 439

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           F++  + S+ + L+ +M+++  + DA   +
Sbjct: 440 FLQHKDESRAVHLIGEMRDRGFITDAGTTA 469



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 108/205 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+ + ++   ++ ++ +  G++P +V   TL  GL ++ +  +A +LFD+M   
Sbjct: 15  ILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVAR 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  I+GLCK G    +  LF+ +    C+L++  YS LI  LCK  R+  A
Sbjct: 75  GCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +   + TY+ +I GL N  +  +A  L  +M    + PNV+TF  L+  
Sbjct: 135 LDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDT 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F +  +      +L  M E  V PD
Sbjct: 195 FCKEGKVLAAEGVLKTMTEMGVEPD 219



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 116/229 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +CK  ++  A  +   M   G++PDVV +N+L  G     +V  A KLFD M   
Sbjct: 190 VLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITK 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y+I I+G CK   I E+ +LF  +       +  +Y+ LI GLC+ GRL  A
Sbjct: 250 GCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF ++     + ++ TY+I++ G    G + KA  LF  M+   + PN++ +  L++ 
Sbjct: 310 QDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNA 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +        EL  ++    + P+  I + +++ L K  +   +L +F
Sbjct: 370 MCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAF 418



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK + +  AL+++S M +K I P +  + +L  GL    + + A  L +EM    
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 62  VAADTRTYTIFIDGLCKNGYI-----------------------------------VESV 86
           +  +  T+ + +D  CK G +                                   VE+ 
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF  +    C+ D+ +YS LI+G CK+ R++ A +LF+ +       + V+Y+ +IHGL
Sbjct: 241 KLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGL 300

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++ +A DLF +M  N   PN+ T+  L+ GF +     K   L   M+   + P+ 
Sbjct: 301 CQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNL 360

Query: 207 SIVSIVVDLLAKN 219
            + +I+V+ + K+
Sbjct: 361 VMYNILVNAMCKS 373



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 110/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GY    E+  A  L+  M++KG KPDV  ++ L  G  +  +++ A +LF+EM   G
Sbjct: 226 LMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +Y   I GLC+ G + E+ +LF+ +       ++  Y+ L+DG CK G L  A 
Sbjct: 286 STPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAF 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++    L  ++V Y+I+++ +   G +  A +LF ++    + PNV  + T+I+G 
Sbjct: 346 RLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGL 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     + +E    M++    PD    ++++
Sbjct: 406 CKEGLLDEALEAFRNMEDDGCPPDEFSYNVII 437



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 99/193 (51%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G+ P+    N L     ++ +V+  F +  +  + G+     T+T  I+GL K G   ++
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           VELF  +    C+ D   Y+ +I+GLCK G   +A  LF  +       +VVTYS +IH 
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++++A D+F  M+   ++P + T+ +LI G    +   +   LL++M   N+MP+
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 206 ASIVSIVVDLLAK 218
               +++VD   K
Sbjct: 185 VVTFNVLVDTFCK 197



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING  K  +   A+ L+ +M+++G +PD   + T+  GL +I +   A  LF +M+  G
Sbjct: 51  LINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  I  LCK   + E++++F  ++       I  Y+ LI GLC   R + A 
Sbjct: 111 CQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEAS 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ +VVT+++++     +G++  A  +   M E  V P+V+T+ +L++G+
Sbjct: 171 ALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGY 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               E  +  +L   M  K   PD    SI+++   K
Sbjct: 231 SMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCK 267


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 125/210 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYCK K I+ A  L++EM+ +G+ PD V +NTL  GL ++ ++  A  LF  M  +
Sbjct: 380 ILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSN 439

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY++ +DG CK GY+ ++  LFR ++    + DI  Y+ LID +CK G L+ A
Sbjct: 440 GNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDA 499

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  L    L+ +V  Y+ +I+ L  +G +D+A + F +ME +   P+  ++  +I G
Sbjct: 500 RKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRG 559

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           F++  + S+  +L+ +M+++  + +A   +
Sbjct: 560 FLQYKDESRAAQLIGEMRDRGFVAEAGTTT 589



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK+K +  AL+++S M +K I PD+  +N+L  GL    + + A  L +EM   
Sbjct: 240 ILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSL 299

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL------------- 107
            +  +  T+ + +D +CK G + E+  +F+T+  +  E D+  YS L             
Sbjct: 300 NIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEA 359

Query: 108 ----------------------IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                 I G CK+ R++ A +LF+ +    L  D V Y+ +IHG
Sbjct: 360 RKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHG 419

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++ +A DLF +M  N   P++ T+  L+ GF +     K   L   M+   + PD
Sbjct: 420 LCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPD 479

Query: 206 ASIVSIVVDLLAK 218
            ++ +I++D + K
Sbjct: 480 IAMYNILIDAMCK 492



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGA-LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L++   K  +  GA ++L  +M   G+ PD+   + L      + +V+ AF +F +M + 
Sbjct: 100 LLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKL 159

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+   I+GLCK G   ++VE F       C+  +  Y+ +I+GLCK G    A
Sbjct: 160 GLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAA 219

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       +VVTY+I+I  L  D  +++A D+F  M+   ++P++ T+ +LI G
Sbjct: 220 AGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQG 279

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   +   LL++M   N+MP+    +++VD + K
Sbjct: 280 LCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 108/210 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +   + ++ A +++S+M+  G++PD V  NTL  GL ++ +  +A + FD+ +  
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS 194

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TYT  I+GLCK G    +  LF+ +    C+ ++  Y+ LID LCK   +  A
Sbjct: 195 GCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEA 254

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  D+ TY+ +I GL N  +  +A  L  +M    + PN+ TF  L+  
Sbjct: 255 LDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDA 314

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
             +  + S+   +   M E  V PD    S
Sbjct: 315 ICKEGKVSEAQGVFKTMTEMGVEPDVVTYS 344



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   A+  + +  + G +P V  + T+  GL +I +   A  LF +M+  G
Sbjct: 171 LINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG 230

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I ID LCK+  + E++++F  ++  +   DI  Y+ LI GLC   R + A 
Sbjct: 231 CQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEAS 290

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ ++ T+++++  +  +G++ +A  +F  M E  V P+V+T+ +L++G+
Sbjct: 291 ALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGY 350

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               E  +  +L   M  K   PDA   +I++
Sbjct: 351 SLRMEIVEARKLFDAMITKGCKPDAFSYNILI 382



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 114/229 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CK  ++  A  ++  M   G++PDVV +++L  G     ++  A KLFD M   
Sbjct: 310 VLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITK 369

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y I I G CK   I E+ +LF  +       D   Y+ LI GLC+ GRL  A
Sbjct: 370 GCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREA 429

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF ++     + D+ TYS+++ G   +G + KA  LF  M+   + P++  +  LI  
Sbjct: 430 QDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDA 489

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +        +L  ++  + ++P+  I + +++ L K  +   +L +F
Sbjct: 490 MCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAF 538



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GY    EI  A  L+  M++KG KPD   +N L  G  +  +++ A +LF+EM   G
Sbjct: 346 LMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG 405

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I GLC+ G + E+ +LF+ +       D+  YS L+DG CK G L  A 
Sbjct: 406 LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAF 465

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  D+  Y+I+I  +   G +  A  LF ++    + PNV  + T+I+  
Sbjct: 466 RLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNL 525

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     + +E    M+     PD    ++++
Sbjct: 526 CKEGLLDEALEAFRNMEGDGCPPDEFSYNVII 557



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 98/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  E   A  L+ +M   G +P+VV +N L   L +   V  A  +F  M+   
Sbjct: 206 IINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKR 265

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I GLC      E+  L   +  L    +I  ++ L+D +CK G++  A 
Sbjct: 266 ISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQ 325

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F ++    +  DVVTYS +++G     ++ +A  LF  M      P+  ++  LI G+
Sbjct: 326 GVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGY 385

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L ++M  + + PD
Sbjct: 386 CKAKRIDEAKQLFNEMIHQGLTPD 409



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 1/163 (0%)

Query: 69  YTIFIDGLCKNG-YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           +T  +  + K G Y    + L + + +     DI   S LID      R+++A  +F  +
Sbjct: 97  FTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKM 156

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +  L  D VT++ +I+GL   G+  +A + F D E +   P V T+ T+I+G  +I E 
Sbjct: 157 IKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGET 216

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           +    L  KM+E    P+    +I++D L K+++   +L  F+
Sbjct: 217 TAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFS 259


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 126/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  ++E    L SEM   G   DVV +N L     +  ++E+A+  F EM+R G
Sbjct: 241 LIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQG 300

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  T++ F+D  CK G + E+++LF  +R+     +   Y+ L+DG CK+GRL+ A+
Sbjct: 301 VVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAI 360

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    LV +VVTY++M+ GL  +G++ +A ++   ME   V  N + + TLIHG 
Sbjct: 361 VLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGH 420

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N   + ++LL++MK K +  D S+   ++  L K++
Sbjct: 421 FMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQ 459



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK+++++ A +L  +M   G++P+ VI+ T+   LF+  +   A  L  ++   G
Sbjct: 451 LIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSG 510

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   IDGLCK G I E++  F  +R L  + ++QAY+ LIDG CK G L  A+
Sbjct: 511 FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAM 570

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  D V Y+ +I G      +  A  L   M E+ +  ++  +   I GF
Sbjct: 571 HLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGF 630

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +N   +   +L +M    + PD ++ + ++
Sbjct: 631 CNMNMMQEARGVLSEMIGTGITPDKTVYNCLI 662



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK  ++  A N+ S M   G+K + +++ TL  G F  +  ERA  L ++M+  
Sbjct: 380 VMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNK 439

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I GLCK+  + E+  L   +       +   Y+ ++D L K+G+   A
Sbjct: 440 GMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEA 499

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L H +       +VVTY  +I GL   G + +A   F  M E  + PNV  +  LI G
Sbjct: 500 VALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDG 559

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +I   +K + L+++M +K +  D  + + ++D
Sbjct: 560 FCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID 593



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   ++ A+ L  EM+ +G+ P+VV +  +  GL +  +V  A  +   M+R G
Sbjct: 346 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGG 405

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+   YT  I G   N     +++L   ++    ELD+  Y  LI GLCK  +++ A 
Sbjct: 406 VKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAK 465

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L H +    L  + V Y+ ++  L+  G+  +A  L   + ++   PNV+T+  LI G 
Sbjct: 466 SLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGL 525

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S+ I   +KM+E  + P+    + ++D   K
Sbjct: 526 CKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCK 562



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + P+    N + + L    Q     +LFD +       +  T+ I ID LCK G +VE+ 
Sbjct: 165 VPPNTRTCNHILLRLARNRQGGLVRRLFDLLP----VPNVFTFNIVIDFLCKEGELVEAR 220

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  ++ + C  D+  Y+ LIDG  K G LE   +L   + +    ADVVTY+ +I+  
Sbjct: 221 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCF 280

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+M+KA+  F +M+   V  NV+TF T +  F +     + ++L  +M+ + +MP+ 
Sbjct: 281 SKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE 340

Query: 207 SIVSIVVD 214
              + +VD
Sbjct: 341 FTYTSLVD 348



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+  N   E AL+L ++M +KG++ DV ++ TL  GL +  +V+ A  L  +M   G
Sbjct: 416 LIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCG 475

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  YT  +D L K G   E+V L   +     + ++  Y  LIDGLCK+G +  A+
Sbjct: 476 LRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAI 535

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    L  +V  Y+ +I G    G ++KA  L  +M +  ++ + + + +LI G+
Sbjct: 536 SHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGY 595

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++         L  KM E  +  D
Sbjct: 596 MKQANLQDAFALKTKMIESGLQLD 619



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 92/190 (48%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+V   N +   L +  ++  A  LF  M+  G + D  TY   IDG  K G + E  +L
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +R   C  D+  Y+ LI+   K GR+E A   F  + R  +VA+VVT+S  +     
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G + +A  LF  M    + PN  T+ +L+ G  +       I LL +M  + ++P+   
Sbjct: 318 EGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 377

Query: 209 VSIVVDLLAK 218
            +++VD L K
Sbjct: 378 YTVMVDGLCK 387



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 1/190 (0%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           KE E A+ L  ++L  G +P+VV +  L  GL +   +  A   F++M+  G+  + + Y
Sbjct: 495 KESE-AVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAY 553

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           T  IDG CK G + +++ L   +      LD   Y+ LIDG  K   L+ A  L   +  
Sbjct: 554 TALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIE 613

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             L  D+  Y+  I G  N   M +A  +  +M    + P+   +  LI  + ++    +
Sbjct: 614 SGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEE 673

Query: 190 VIELLHKMKE 199
              L ++M+ 
Sbjct: 674 ASSLQNEMES 683



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   I  A++ +++M   G+ P+V  +  L  G  +I  + +A  L +EM   G
Sbjct: 521 LIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG 580

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   YT  IDG  K   + ++  L   +     +LD+  Y+C I G C    ++ A 
Sbjct: 581 MSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEAR 640

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
            +   +    +  D   Y+ +I      G M++A  L  +ME 
Sbjct: 641 GVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 6/202 (2%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P VV  +TL   L +   ++ A +    +++  V  +TRT    +  L +N        L
Sbjct: 134 PSVV--DTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARN----RQGGL 187

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
            R L  L    ++  ++ +ID LCK G L  A  LF  +       DVVTY+ +I G   
Sbjct: 188 VRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGK 247

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G +++   L  +M ++  A +V+T+  LI+ F +     K      +MK + V+ +   
Sbjct: 248 CGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVT 307

Query: 209 VSIVVDLLAKNEISLNSLPSFT 230
            S  VD   K  +   ++  F 
Sbjct: 308 FSTFVDAFCKEGLVQEAMKLFA 329


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 126/221 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YCK K ++  + L+ E+ SKG+ P+ + +NTL +G  +  ++  A +LF EM   
Sbjct: 419 ILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 478

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY I +DGLC NG + +++E+F  ++  +  L I  Y+ +I G+C + +++ A
Sbjct: 479 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 538

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF SL    +  DVVTY++MI GL   G + +A  LF  M+E+   P+  T+  LI  
Sbjct: 539 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 598

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +  +     +EL+ +MK      D+S + +V+D+L+   +
Sbjct: 599 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRL 639



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +  A  ++  M+SKG +PD+V ++ L     +  +V+   +LF E+   G
Sbjct: 385 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   + G C++G +  + ELF+ +        +  Y  L+DGLC +G L  AL
Sbjct: 445 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 504

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  +   +  Y+I+IHG+ N  ++D A  LF  + +  V P+V+T+  +I G 
Sbjct: 505 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 564

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    S+   L  KMKE    PD    +I++
Sbjct: 565 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 114/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C + + +    +  EM+ + I PDVV  + L     +  ++  A +L++EM   G
Sbjct: 315 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 374

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT TY   IDG CK   + E+ ++F  +    CE DI  YS LI+  CK+ R++  +
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 434

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L+ + +TY+ ++ G    G+++ A +LF +M    V P+V+T+G L+ G 
Sbjct: 435 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 494

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               E +K +E+  KM++  +     I +I++
Sbjct: 495 CDNGELNKALEIFEKMQKSRMTLGIGIYNIII 526



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    +  A+ L   M+    +PD+V  +TL  GL    +V  A  L D M   G
Sbjct: 175 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 234

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++ LCK+G    +++LFR +     +  +  YS +ID LCK G  + AL
Sbjct: 235 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 294

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    + ADVVTYS +I GL NDG+ D    +  +M    + P+V+TF  LI  F
Sbjct: 295 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 354

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  EL ++M  + + PD    + ++D   K
Sbjct: 355 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 391



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK+   + AL+L++EM  KGIK DVV +++L  GL    + +   K+  EM   
Sbjct: 279 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 338

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T++  ID   K G ++E+ EL+  +       D   Y+ LIDG CK   L  A
Sbjct: 339 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 398

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +       D+VTYSI+I+      ++D    LF ++    + PN IT+ TL+ G
Sbjct: 399 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 458

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  + +   EL  +M  + V P      I++D L  N
Sbjct: 459 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 497



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  AL L   M+  G +PD V +  +   L +      A  LF +M+   
Sbjct: 210 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 269

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A    Y+I ID LCK+G   +++ LF  + +   + D+  YS LI GLC  G+ +   
Sbjct: 270 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 329

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    ++ DVVT+S +I     +G++ +A +L+ +M    +AP+ IT+ +LI GF
Sbjct: 330 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 389

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   +  ++   M  K   PD    SI+++   K
Sbjct: 390 CKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 426



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN YC+ K++  A ++       G +PD +  +TL  G     +V  A  L D M   
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T +  I+GLC  G + E++ L   +     + D   Y  +++ LCKSG   +A
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 258

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  +    + A VV YSI+I  L  DG  D A  LF +ME   +  +V+T+ +LI G
Sbjct: 259 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 318

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +     ++L +M  +N++PD    S ++D+  K
Sbjct: 319 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 356



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 97/209 (46%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A++L+  M+     P  +  N L   +    Q +        M+ +G+  D  T T
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   ++ +  +      L  E D   +S L++G C  GR+  A+ L   +   
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D+VT S +I+GL   G++ +A  L   M E    P+ +T+G +++   +    +  
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 258

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++L  KM+E+N+       SIV+D L K+
Sbjct: 259 LDLFRKMEERNIKASVVQYSIVIDSLCKD 287



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 20/220 (9%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-ADTRTYTIFIDGLC 77
           Y E L  GI  D+ +++   I LFE     R      +  R   A A T+ Y + + G C
Sbjct: 67  YKERLRNGI-VDIKVNDA--IDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVL-GFC 122

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K             + +   E D+   + +I+  C+  +L  A  +     +     D +
Sbjct: 123 KG------------MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTI 170

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T+S +++G   +G++ +A  L   M E    P+++T  TLI+G       S+ + L+ +M
Sbjct: 171 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 230

Query: 198 KEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            E    PD      V++ L K   S NS  +  +  + EE
Sbjct: 231 VEYGFQPDEVTYGPVLNRLCK---SGNSALALDLFRKMEE 267


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 126/221 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YCK K ++  + L+ E+ SKG+ P+ + +NTL +G  +  ++  A +LF EM   
Sbjct: 390 ILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY I +DGLC NG + +++E+F  ++  +  L I  Y+ +I G+C + +++ A
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 509

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF SL    +  DVVTY++MI GL   G + +A  LF  M+E+   P+  T+  LI  
Sbjct: 510 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 569

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +  +     +EL+ +MK      D+S + +V+D+L+   +
Sbjct: 570 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRL 610



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +  A  ++  M+SKG +PD+V ++ L     +  +V+   +LF E+   G
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   + G C++G +  + ELF+ +        +  Y  L+DGLC +G L  AL
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  +   +  Y+I+IHG+ N  ++D A  LF  + +  V P+V+T+  +I G 
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    S+   L  KMKE    PD    +I++
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 114/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C + + +    +  EM+ + I PDVV  + L     +  ++  A +L++EM   G
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT TY   IDG CK   + E+ ++F  +    CE DI  YS LI+  CK+ R++  +
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L+ + +TY+ ++ G    G+++ A +LF +M    V P+V+T+G L+ G 
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               E +K +E+  KM++  +     I +I++
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    +  A+ L   M+    +PD+V  +TL  GL    +V  A  L D M   G
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++ LCK+G    +++LFR +     +  +  YS +ID LCK G  + AL
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    + ADVVTYS +I GL NDG+ D    +  +M    + P+V+TF  LI  F
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  EL ++M  + + PD    + ++D   K
Sbjct: 326 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 362



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK+   + AL+L++EM  KGIK DVV +++L  GL    + +   K+  EM   
Sbjct: 250 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 309

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T++  ID   K G ++E+ EL+  +       D   Y+ LIDG CK   L  A
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 369

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +       D+VTYSI+I+      ++D    LF ++    + PN IT+ TL+ G
Sbjct: 370 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 429

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  + +   EL  +M  + V P      I++D L  N
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 468



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  AL L   M+  G +PD V +  +   L +      A  LF +M+   
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A    Y+I ID LCK+G   +++ LF  + +   + D+  YS LI GLC  G+ +   
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    ++ DVVT+S +I     +G++ +A +L+ +M    +AP+ IT+ +LI GF
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 360

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   +  ++   M  K   PD    SI+++   K
Sbjct: 361 CKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 397



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN YC+ K++  A ++       G +PD +  +TL  G     +V  A  L D M   
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T +  I+GLC  G + E++ L   +     + D   Y  +++ LCKSG   +A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  +    + A VV YSI+I  L  DG  D A  LF +ME   +  +V+T+ +LI G
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +     ++L +M  +N++PD    S ++D+  K
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 97/209 (46%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A++L+  M+     P  +  N L   +    Q +        M+ +G+  D  T T
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   ++ +  +      L  E D   +S L++G C  GR+  A+ L   +   
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D+VT S +I+GL   G++ +A  L   M E    P+ +T+G +++   +    +  
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++L  KM+E+N+       SIV+D L K+
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKD 258



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 20/220 (9%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-ADTRTYTIFIDGLC 77
           Y E L  GI  D+ +++   I LFE     R      +  R   A A T+ Y + + G C
Sbjct: 38  YKERLRNGI-VDIKVNDA--IDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVL-GFC 93

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K             + +   E D+   + +I+  C+  +L  A  +     +     D +
Sbjct: 94  KG------------MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTI 141

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T+S +++G   +G++ +A  L   M E    P+++T  TLI+G       S+ + L+ +M
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201

Query: 198 KEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            E    PD      V++ L K   S NS  +  +  + EE
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCK---SGNSALALDLFRKMEE 238


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 121/215 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K ++  + L+ EM  +G+  + V + TL  GLF+    + A ++F EM  DG
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDG 461

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   +DGLCKNG + +++ +F  L+  K E  I  Y+ +I+G+CK+G++E   
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    +  DVV Y+ MI G    G  ++A  LF +M+E+   PN   + TLI   
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  +     EL+ +M+      DAS + +V ++L
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
           +I+G CKNK ++ ALNL+ EM +KGI+P+VV +++L   L                    
Sbjct: 262 IIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 42  -----FEIHQVERAF----------KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                F    +  AF          KL+DEM +  +     TY+  I+G C +  + E+ 
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+ +YS LI G CK+ R++  +ELF  + +  LV + VTY+ +I GL
Sbjct: 382 QMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGL 441

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G  D A ++F +M  + V PN++T+ TL+ G  +  +  K + +   ++   + P  
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501

Query: 207 SIVSIVVDLLAK 218
              +I+++ + K
Sbjct: 502 YTYNIMIEGMCK 513



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 13/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC +K I  A+ L  +M   G +P+ V  NTL  GLF  ++   A  L D M   G
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKG 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ++GLCK G    +  L   +   K E  +  Y+ +IDGLCK+  ++ AL
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDAL 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTYS +I  L N G+   A  L  DM E  + P+V TF  LI  F
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           ++  +  +  +L  +M ++++ P     S +++              F +H+R +E  +
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN-------------GFCMHDRLDEAKQ 382



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL +  +M+  G +P++V  ++L  G     ++  A  L D+M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T T+   I GL  +    E+V L   +    C+ D+  Y  +++GLCK G  ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + + +G L   V+ Y+ +I GL  +  MD A +LF +ME   + PNV+T+ +LI  
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + PD    S ++D   K
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 111/216 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  + + A  L ++M    ++P V+I+ T+  GL +   ++ A  LF EM+  
Sbjct: 226 VVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK 285

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I  LC  G   ++  L   +   K   D+  +S LID   K G+L  A
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  + +  +   +VTYS +I+G     ++D+A  +F  M      P+V+++ TLI G
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKG 405

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           F +     + +EL  +M ++ ++ +    + ++  L
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGL 441



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 106/210 (50%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A+ L+ EM+     P ++  + L   + ++++ +    L ++MQ  G+  +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   +  ++ +   +  L  E +I   S L++G C S R+  A+ L   +   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               + VT++ +IHGL+   +  +A  L   M      P+++T+G +++G  +  +    
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             LL+KM++  + P   I + ++D L KN+
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNK 270



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G CK  ++E   +L+  +  KG+KPDVV +NT+  G       E A  LF EM+ D
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   ++  Y   I    ++G    S EL + +R      D      L+  +   GRL+
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLD 622



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 1/179 (0%)

Query: 40  GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           GL E+ +++ A  LF EM +         ++  +  + K       + L   ++ L    
Sbjct: 56  GLSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPH 114

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           +   YS LI+  C+  +L +AL +   + +     ++VT S +++G  +  ++ +A  L 
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             M      PN +TF TLIHG    N+ S+ + L+ +M  K   PD     +VV+ L K
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCK 233


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 121/215 (56%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI G+CK K +E  + ++ EM  +G+  + V +N L  GLF+    + A ++F EM  DG
Sbjct: 1016 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 1075

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            V  +  TY   +DGLCKNG + +++ +F  L+  K E  I  Y+ +I+G+CK+G++E   
Sbjct: 1076 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 1135

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +LF +L    +  DVV Y+ MI G    G  ++A  LF +M+E+   PN   + TLI   
Sbjct: 1136 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 1195

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +R  +     EL+ +M+      DAS + +V ++L
Sbjct: 1196 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 1230



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+   +  A++L  +M+  G KPD+V +N +   L +  +V  AF  F E++R G
Sbjct: 264 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 323

Query: 62  VAADTRTYTIFIDGLC-----------------------------------KNGYIVESV 86
           +  +  TYT  ++GLC                                   KNG ++E+ 
Sbjct: 324 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 383

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ELF  +  +  + DI  YS LI+GLC   R++ A ++F  +     +ADVV+Y+ +I+G 
Sbjct: 384 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 443

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               +++    LF +M +  +  N +T+ TLI GF +  +  K  E   +M    + PD 
Sbjct: 444 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 503

Query: 207 SIVSIVVDLLAKN 219
              +I++  L  N
Sbjct: 504 WTYNILLGGLCDN 516



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 114/209 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C +  I+ A  ++  M+SKG   DVV +NTL  G  +  +VE   KLF EM + G
Sbjct: 404 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 463

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ++T TY   I G  + G + ++ E F  +       DI  Y+ L+ GLC +G LE AL
Sbjct: 464 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 523

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  D+VTY+ +I G+   G++++A  LF  +    + P+++T+ T++ G 
Sbjct: 524 VIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 583

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
                  +V  L  KMK++ +M +   +S
Sbjct: 584 CTKGLLHEVEALYTKMKQEGLMKNDCTLS 612



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C +     A  L S+M+ K I P+V+ ++ L     +  +V  A +LF+EM R  
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I+GLC +  I E+ ++F  +    C  D+ +Y+ LI+G CK+ R+E  +
Sbjct: 394 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  LV++ VTY+ +I G +  G +DKA + F  M+   ++P++ T+  L+ G 
Sbjct: 454 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 513

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               E  K + +   M+++ +  D    + V+  + K
Sbjct: 514 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 550



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 13/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC +K I  A+ L  +M   G +P+ V  NTL  GLF  ++   A  L D M   G
Sbjct: 771 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 830

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ++GLCK G    +  L   +   K E  +  Y+ +IDGLCK   ++ AL
Sbjct: 831 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 890

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTYS +I  L N G+   A  L  DM E  + P+V TF  LI  F
Sbjct: 891 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 950

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           ++  +  +  +L  +M ++++ P     S +++              F +H+R +E  +
Sbjct: 951 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN-------------GFCMHDRLDEAKQ 996



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 35/252 (13%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-----------VER- 49
            +I+G CK K ++ ALNL+ EM +KGI+P+VV +++L   L    +           +ER 
Sbjct: 876  IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 935

Query: 50   -----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                   A KL+DEM +  +     TY+  I+G C +  + E+ 
Sbjct: 936  INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 995

Query: 87   ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++F  +    C  D+  Y+ LI G CK  R+E  +E+F  + +  LV + VTY+I+I GL
Sbjct: 996  QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 1055

Query: 147  YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            +  G  D A ++F +M  + V PN++T+ TL+ G  +  +  K + +   ++   + P  
Sbjct: 1056 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 1115

Query: 207  SIVSIVVDLLAK 218
               +I+++ + K
Sbjct: 1116 YTYNIMIEGMCK 1127



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL +  +M+  G +P++V  ++L  G     ++  A  L D+M   
Sbjct: 735 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T T+   I GL  +    E++ L   +    C+ D+  Y  +++GLCK G  ++A
Sbjct: 795 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + + +G L   V+ Y+ +I GL     MD A +LF +ME   + PNV+T+ +LI  
Sbjct: 855 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + PD    S ++D   K
Sbjct: 915 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 952



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 114/216 (52%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +++NG CK  + + A NL ++M    ++P V+I+NT+  GL +   ++ A  LF EM+  
Sbjct: 840  VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 899

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  +  TY+  I  LC  G   ++  L   +   K   D+  +S LID   K G+L  A
Sbjct: 900  GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 959

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +L+  + +  +   +VTYS +I+G     ++D+A  +F  M      P+V+T+ TLI G
Sbjct: 960  EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 1019

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            F +     + +E+  +M ++ ++ +    +I++  L
Sbjct: 1020 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 1055



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 111/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + KN ++  A  L+ EM+   I PD+V +++L  GL    +++ A ++FD M   G
Sbjct: 369 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  +Y   I+G CK   + + ++LFR +       +   Y+ LI G  ++G ++ A 
Sbjct: 429 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 488

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F  +    +  D+ TY+I++ GL ++G+++KA  +F DM++  +  +++T+ T+I G 
Sbjct: 489 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGM 548

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  +   L   +  K + PD
Sbjct: 549 CKTGKVEEAWSLFCSLSLKGLKPD 572



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C   ++  AL++  +ML  G +PD V   +L  G    ++V  A  L D+M   
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   ID LCK   + ++ + F+ +       ++  Y+ L++GLC S R   A
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+TYS ++     +G++ +A +LF +M   ++ P+++T+ +LI+G
Sbjct: 348 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 407

Query: 181 FI---RINEPSKVIELL 194
                RI+E +++ +L+
Sbjct: 408 LCLHDRIDEANQMFDLM 424



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI G  +  + + A  ++ EM+S G+ P+++ +NTL  GL +  ++E+A  +F+ +QR 
Sbjct: 1050 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 1109

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             +     TY I I+G+CK G + +  +LF  L +   + D+ AY+ +I G C+ G  E A
Sbjct: 1110 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 1169

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
              LF  +     + +   Y+ +I     DG  + + +L  +M     A +  T G
Sbjct: 1170 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG 1224



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K K+ +  ++L  +M   GI+ D+   N +        QV  A  +  +M + G
Sbjct: 194 LLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLG 253

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T    ++G C+   + ++V L   +  +  + DI AY+ +ID LCK+ R+  A 
Sbjct: 254 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 313

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + R  +  +VVTY+ +++GL N  +   A  L  DM +  + PNVIT+  L+  F
Sbjct: 314 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 373

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  +  +  EL  +M   ++ PD    S +++ L 
Sbjct: 374 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 409



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 98/209 (46%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A++L+S+M+     P +V  N L   + ++ + +    L  +M+  G+  D  T+ 
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C    +  ++ +   +  L  E D      L++G C+  R+  A+ L   +   
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D+V Y+ +I  L    +++ A D F ++E   + PNV+T+  L++G    +  S  
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             LL  M +K + P+    S ++D   KN
Sbjct: 348 ARLLSDMIKKKITPNVITYSALLDAFVKN 376



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 104/208 (50%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A+ L+ EM+     P ++  + L   + ++++ +    L ++MQ  G+  +  TY+
Sbjct: 675 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 734

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   +  ++ +   +  L  E +I   S L++G C S R+  A+ L   +   
Sbjct: 735 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               + VT++ +IHGL+   +  +A  L   M      P+++T+G +++G  +  +    
Sbjct: 795 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
             LL+KM++  + P   I + ++D L K
Sbjct: 855 FNLLNKMEQGKLEPGVLIYNTIIDGLCK 882



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 25/239 (10%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C N E+E AL ++ +M  + +  D+V + T+  G+ +  +VE A+ LF  +   
Sbjct: 508 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 567

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR----------------ILKCELDIQAY 104
           G+  D  TYT  + GLC  G + E   L+  ++                 L  EL  +  
Sbjct: 568 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKML 627

Query: 105 SC-----LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           SC     L+  + KSG  + AL L  +   G    D     +  +GL ++ ++D A  LF
Sbjct: 628 SCGYAPSLLKDI-KSGVCKKALSLLRAFS-GKTSYD-YREKLSRNGL-SELKLDDAVALF 683

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +M ++   P++I F  L+    ++N+   VI L  +M+   +  +    SI+++   +
Sbjct: 684 GEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCR 742



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ T++I+I+      Q+  A  +   M +    P+ +T G+L++GF R N  S  + L+
Sbjct: 222 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 281

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            KM E    PD    + ++D L K +   ++   F   ER+
Sbjct: 282 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 322


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 119/203 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK+K ++ ALNL+ EM  K + PD V +++L  GL +  ++   + L DEM+  
Sbjct: 592 ILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR 651

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TY   IDGLCKNG++ +++ LF  ++      +   ++ L+DGLCK GRL+ A
Sbjct: 652 GQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDA 711

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  L       DV  Y++MI+G    G +++A  +   MEEN   PN +TF  +I+ 
Sbjct: 712 QEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINA 771

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
             + +E  K  +LL +M  + ++
Sbjct: 772 LFKKDENDKAEKLLRQMIARGLL 794



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 114/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++   K  +++ A ++ + ML   +KPDV  +NTL  G   +++V++A  +F+ M   
Sbjct: 522 ILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLM 581

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TYTI I+G CK+  + E++ LF+ +       D   YS L+DGLCKSGR+   
Sbjct: 582 GVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYV 641

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +      ADV+TY+ +I GL  +G +DKA  LF  M++  + PN  TF  L+ G
Sbjct: 642 WDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDG 701

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +        E+   +  K    D  I ++++
Sbjct: 702 LCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMI 734



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM  KGI  DVV ++TL  G   + +++ A  L +EM    
Sbjct: 453 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKT 512

Query: 62  VAADTRTYTIFIDGLCK------------------------------NGYIV-----ESV 86
           +  D RTYTI +D L K                              NGY++     ++ 
Sbjct: 513 INPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQ 572

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  + ++    D+  Y+ LI+G CKS  ++ AL LF  + +  +V D VTYS ++ GL
Sbjct: 573 HVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGL 632

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++    DL  +M +     +VIT+ +LI G  +     K I L +KMK++ + P+ 
Sbjct: 633 CKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNT 692

Query: 207 SIVSIVVDLLAK 218
              +I++D L K
Sbjct: 693 FTFTILLDGLCK 704



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY    E++ A ++++ M   G+ PDV  +  L  G  +   V+ A  LF EM +  
Sbjct: 558 LMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN 617

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY+  +DGLCK+G I    +L   +R      D+  Y+ LIDGLCK+G L+ A+
Sbjct: 618 MVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAI 677

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  +  T++I++ GL   G++  A ++F D+       +V  +  +I+G 
Sbjct: 678 ALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGH 737

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + +L KM+E   +P+A    I+++ L K +
Sbjct: 738 CKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKD 776



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +  GA+ L  ++  +  KP+V +++T+   L +   V  A+ LF EM   G
Sbjct: 418 LINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++AD  TY+  I G C  G + E++ L   + +     D++ Y+ L+D L K G+++ A 
Sbjct: 478 ISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAK 537

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV TY+ +++G     ++ KA  +F  M    V P+V T+  LI+GF
Sbjct: 538 SVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 597

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L  +M +KN++PD    S +VD L K+
Sbjct: 598 CKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKS 635



 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 122/240 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ AL+ + ++L++G + + V + TL  G+ +I     A KL  ++    
Sbjct: 383 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRL 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  ID LCK   + E+  LF  + +     D+  YS LI G C  G+L+ A+
Sbjct: 443 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  DV TY+I++  L  +G++ +A  +   M +  V P+V T+ TL++G+
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGY 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
           + + E  K   + + M    V PD    +I+++   K+++   +L  F    ++  V ++
Sbjct: 563 LLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDT 622



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 34/252 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS----------------------------------KG 26
           I+ING+CK K ++ ALNL+ EM+                                   KG
Sbjct: 278 IMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKG 337

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I+PD+   N L      + Q+   F +  ++ + G    T T    I GLC  G + +++
Sbjct: 338 IQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKAL 397

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                L     +L+  +Y+ LI+G+CK G    A++L   +   +   +V  YS +I  L
Sbjct: 398 HFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDAL 457

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                + +A+ LF +M    ++ +V+T+ TLI+GF  + +  + I LL++M  K + PD 
Sbjct: 458 CKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDV 517

Query: 207 SIVSIVVDLLAK 218
              +I+VD L K
Sbjct: 518 RTYTILVDALGK 529



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 104/196 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  +   A+    ++  +  KP+V ++NT+   L +   V  A+ LF EM   G
Sbjct: 104 LINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG 163

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++A+  TY+  I G C  G + E++ L   + +     ++  Y+ L+D LCK G+++ A 
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  + ++V+TYS ++ G +   ++ KA  +F  M    V P+V ++  +I+GF
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283

Query: 182 IRINEPSKVIELLHKM 197
            +I    K + L  +M
Sbjct: 284 CKIKRVDKALNLFKEM 299



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 113/213 (53%), Gaps = 1/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM  KGI  +VV ++TL  G   + +++ A  L + M    
Sbjct: 139 IIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKT 198

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY I +D LCK G + E+  +   +     + ++  YS L+DG      ++ A 
Sbjct: 199 INPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQ 258

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++    +  DV +Y+IMI+G     ++DKA +LF +M  +   P +I F  ++  F
Sbjct: 259 HVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP-IIQFNKILDSF 317

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++   S  + L H+++ K + PD   ++I+++
Sbjct: 318 AKMKHYSTAVSLSHRLELKGIQPDLFTLNILIN 350



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ AL+ + ++L++G + + V + TL  G+  I     A K   ++    
Sbjct: 69  LIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRL 128

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK   + E+  LF  + +     ++  YS LI G C  G+L+ AL
Sbjct: 129 AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEAL 188

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I++  L  +G++ +A  +   M +  V  NVIT+ TL+ G+
Sbjct: 189 GLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGY 248

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E  K   + + M    V PD    +I+++   K
Sbjct: 249 FLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCK 285



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 116/255 (45%), Gaps = 34/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +++ A ++ + ML   +K +V+ ++TL  G F +++V++A  +F+ M   
Sbjct: 208 ILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------------RILKCELDIQAYSC-- 106
           GV  D  +Y I I+G CK   + +++ LF+ +            +IL     ++ YS   
Sbjct: 268 GVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAV 327

Query: 107 --------------------LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                               LI+  C  G++     +   + +       VT + +I GL
Sbjct: 328 SLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGL 387

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              GQ+ KA      +       N +++ TLI+G  +I +    I+LL K+  +   P+ 
Sbjct: 388 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNV 447

Query: 207 SIVSIVVDLLAKNEI 221
            + S ++D L K ++
Sbjct: 448 EMYSTIIDALCKYQL 462



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 2/178 (1%)

Query: 43  EIHQVERAFKL--FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
            I  V+ A  L    ++ + G   DT T    I GLC  G + E++     L     +L+
Sbjct: 38  SIQNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLN 97

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
             +Y+ LI+G+C+ G    A++    +   +   +V  Y+ +I  L     + +A+ LF 
Sbjct: 98  QVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFS 157

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +M    ++ NV+T+ TLI+GF  + +  + + LL+ M  K + P+    +I+VD L K
Sbjct: 158 EMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCK 215



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L RG    D VT + +I GL   GQ+ +A      +       N +++ TLI+G  RI +
Sbjct: 55  LKRG-YPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGD 113

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               I+ L K+  +   P+  + + ++D L K ++
Sbjct: 114 TRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQL 148


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 4/232 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  ++E A  L+ +M S+   P+VV ++ L  GL ++ +++ A +L  EM R  
Sbjct: 257 LIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 316

Query: 62  --VAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
             V  +  TY  F+DGLCK     E+ EL R+LR   L+   D   +S LIDGLCK G++
Sbjct: 317 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQI 376

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  +F  +  G  V +V+TY+ +++GL    +M++AH +   M +  V P+VIT+  L
Sbjct: 377 DEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 436

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           +  F + +   + +ELLH M  +   P+    + ++D L K++ S  +   F
Sbjct: 437 VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMF 488



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 131/235 (55%), Gaps = 7/235 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEM---LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI+  CK  ++E A  L+ +M   +S+   P+VV ++ L  GL ++ +++ A +L  EM 
Sbjct: 748 LIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMM 807

Query: 59  RDG--VAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKS 114
           R    V  +  TY  F+DGLCK   + E+ EL R+LR   L+   D   +S LIDGLCK 
Sbjct: 808 RKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKC 867

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G+ + A  +F  +  G  V +VVTY+++++GL    +M++AH +   M +  V P+VIT+
Sbjct: 868 GQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITY 927

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             L+  F + +   + +ELLH M  +   P+    + ++D L K++ S  +   F
Sbjct: 928 SVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMF 982



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 118/213 (55%), Gaps = 5/213 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +I+ A +++ +M++ G  P+V+ +N L  GL +  ++ERA  + + M   G
Sbjct: 366 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY++ +D  CK   + E++EL   +    C  ++  ++ +IDGLCKS R   A 
Sbjct: 426 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAF 485

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++F  +  +  LV D +TY  +I GL+  G+  +A  L   M +    P+   F   I+G
Sbjct: 486 QMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFNCCING 541

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             ++ + S+ +++ ++M E  ++PD    +I++
Sbjct: 542 LSKLGDVSRALQVYNRMLELELVPDKVTFNILI 574



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 40/258 (15%)

Query: 1   ILINGYCKNKEIEGALNLY-SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I++   C+  E   AL ++  EM   G+ P +V +NT+  GL + +++    +LF+E+  
Sbjct: 185 IVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVE 244

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  TY   ID LCK G + E+  L   +    C  ++  YS LI+GLCK GR++ 
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDE 304

Query: 120 ALELFHSLPR-------------------------------------GVL--VADVVTYS 140
           A EL   + R                                     G L    D VT+S
Sbjct: 305 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 364

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I GL   GQ+D+A  +F DM      PNVIT+  L++G  + ++  +   ++  M +K
Sbjct: 365 TLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 424

Query: 201 NVMPDASIVSIVVDLLAK 218
            V PD    S++VD   K
Sbjct: 425 GVTPDVITYSVLVDAFCK 442



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 114/213 (53%), Gaps = 8/213 (3%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G CK  + + A N++ +M++ G  P+VV +N L  GL +  ++ERA  + + M   G
Sbjct: 860  LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG 919

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            V  D  TY++ +D  CK  ++ E++EL   +    C  ++  ++ +IDGLCKS +   A 
Sbjct: 920  VTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAF 979

Query: 122  ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +  +  L  D +TY  +I GL+  G   +A  L   M +    P+   F   I+G
Sbjct: 980  QMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFNCCING 1035

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              ++ + S+    LH+M E  ++PD    +I++
Sbjct: 1036 LSKLGDVSRA---LHRMLELELVPDKVTFNILI 1065



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-R 59
           +L++ +CK   ++ AL L   M S+G  P+VV  N++  GL +  +   AF++FD+M  +
Sbjct: 435 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALK 494

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D  TY   IDGL + G   ++  L   +     + D  A++C I+GL K G +  
Sbjct: 495 HGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMP----DPDTYAFNCCINGLSKLGDVSR 550

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL++++ +    LV D VT++I+I G    G  ++A  LF +M    + P+V+TFG LI 
Sbjct: 551 ALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 610

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +  +     ++L  M    V P+    + +V  L K+
Sbjct: 611 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKS 650



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK    E A  L+ EM++K ++PDV+    L  GL +  QVE A  + D M   
Sbjct: 572 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 631

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   + GLCK+G I E+ +    +    C  D   Y  L+  LC++ R + A
Sbjct: 632 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 691

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   L       D VTY+I++ GL+  GQ ++A  +  +M      P+V+T+ TLI  
Sbjct: 692 LQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDS 751

Query: 181 FIRINEPSKVIELLHKMK---EKNVMPDASIVSIVVDLLAK 218
             +  +  +   L   M     +  +P+    S++++ L K
Sbjct: 752 LCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCK 792



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 105/216 (48%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           ING  K  ++  AL +Y+ ML   + PD V  N L  G  +    E+A  LF+EM    +
Sbjct: 539 INGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 598

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  T+   IDGLCK G +  + ++   +  L    ++  Y+ L+ GLCKSGR+E A +
Sbjct: 599 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQ 658

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
               +     V D +TY  +++ L    + D A  L  +++     P+ +T+  L+ G  
Sbjct: 659 FLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLW 718

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +  + I +L +M  K   PD    + ++D L K
Sbjct: 719 KSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK 754



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 13/239 (5%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
            +LING CK   I+ A  L  EM+ K   + P+++ +N+   GL +   +  A +L   + 
Sbjct: 785  VLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSL- 843

Query: 59   RDG---VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            RDG   V+ DT T++  IDGLCK G   E+  +F  +       ++  Y+ L++GLCK+ 
Sbjct: 844  RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTD 903

Query: 116  RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            ++E A  +  S+    +  DV+TYS+++        +D+A +L   M      PNV+TF 
Sbjct: 904  KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFN 963

Query: 176  TLIHGFIRINEPSKVIELLHKMKEKN-VMPDASIVSIVVDLL------AKNEISLNSLP 227
            ++I G  + ++  +  ++   M  K+ + PD      ++D L       + E+ L+++P
Sbjct: 964  SIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMP 1022



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 8/187 (4%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-R 59
            +L++ +CK   ++ AL L   M S+G  P+VV  N++  GL +  Q   AF++FD+M  +
Sbjct: 929  VLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLK 988

Query: 60   DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             G+A D  TY   IDGL + G+  ++  L   +     + D  A++C I+GL K G +  
Sbjct: 989  HGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMP----DPDTYAFNCCINGLSKLGDVSR 1044

Query: 120  ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            AL   H +    LV D VT++I+I G    G  ++A  LF +M    + P+V+TFG LI 
Sbjct: 1045 AL---HRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 1101

Query: 180  GFIRINE 186
            G  +  +
Sbjct: 1102 GLCKAGQ 1108



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 32/250 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLF------------------ 42
           +I+G CK+     A  ++ +M L  G+ PD + + TL  GLF                  
Sbjct: 471 IIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDP 530

Query: 43  -------------EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
                        ++  V RA ++++ M    +  D  T+ I I G CK G   ++  LF
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALF 590

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             +     + D+  +  LIDGLCK+G++E A ++   +    +  +VVTY+ ++HGL   
Sbjct: 591 EEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKS 650

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++++A     +M  +   P+ IT+G+L++   R +     ++L+ ++K     PD    
Sbjct: 651 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 710

Query: 210 SIVVDLLAKN 219
           +I+VD L K+
Sbjct: 711 NILVDGLWKS 720



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +L+NG CK  ++E A  +   M+ KG+ PDV+ ++ L     +   V+ A +L   M   
Sbjct: 894  VLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASR 953

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
            G   +  T+   IDGLCK+    E+ ++F  +  LK  L  D   Y  LIDGL ++G   
Sbjct: 954  GCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDM-TLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 119  IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             A  L  ++P      D   ++  I+GL   G + +A    L++E   + P+ +TF  LI
Sbjct: 1013 QAEVLLDAMPD----PDTYAFNCCINGLSKLGDVSRALHRMLELE---LVPDKVTFNILI 1065

Query: 179  HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             G  +     +   L  +M  KN+ PD      ++D L K
Sbjct: 1066 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 1105



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS-GRLEIALELFHS 126
           ++  +++ L K+G   ++++LFR+    +C  +   YS L+    K+ G +E  L  F  
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRR 172

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEENAVAPNVITFGTLIHGFIRIN 185
           +        V  Y+I++  L   G+  +A ++F  +M  + VAP ++T+ T+I+G  + N
Sbjct: 173 I--RSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSN 230

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           E    +EL  ++ E+   PD    + ++D L K
Sbjct: 231 ELGAGMELFEELVERGHHPDVVTYNTLIDSLCK 263



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 29/152 (19%)

Query: 2    LINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +I+G CK+ +   A  ++ +M L  G+ PD + + TL  GLF      +A  L D M   
Sbjct: 965  IIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDP 1024

Query: 61   GVAA----------------------------DTRTYTIFIDGLCKNGYIVESVELFRTL 92
               A                            D  T+ I I G CK G   ++  LF  +
Sbjct: 1025 DTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEM 1084

Query: 93   RILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
                 + D+  +  LIDGLCK+G++E   ++ 
Sbjct: 1085 VAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 121/215 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + ++ EM  +G+  + V +N L  GLF+    + A ++F EM  DG
Sbjct: 197 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 256

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   +DGLCKNG + +++ +F  L+  K E  I  Y+ +I+G+CK+G++E   
Sbjct: 257 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 316

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    +  DVV Y+ MI G    G  ++A  LF +M+E+   PN   + TLI   
Sbjct: 317 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 376

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  +     EL+ +M+      DAS + +V ++L
Sbjct: 377 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 411



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-----------VER- 49
           +I+G CK K ++ ALNL+ EM +KGI+P+VV +++L   L    +           +ER 
Sbjct: 57  IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 116

Query: 50  -----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                  A KL+DEM +  +     TY+  I+G C +  + E+ 
Sbjct: 117 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 176

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  Y+ LI G CK  R+E  +E+F  + +  LV + VTY+I+I GL
Sbjct: 177 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 236

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G  D A ++F +M  + V PN++T+ TL+ G  +  +  K + +   ++   + P  
Sbjct: 237 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 296

Query: 207 SIVSIVVDLLAK 218
              +I+++ + K
Sbjct: 297 YTYNIMIEGMCK 308



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 114/216 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  + + A NL ++M    ++P V+I+NT+  GL +   ++ A  LF EM+  
Sbjct: 21  VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 80

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I  LC  G   ++  L   +   K   D+  +S LID   K G+L  A
Sbjct: 81  GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 140

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  + +  +   +VTYS +I+G     ++D+A  +F  M      P+V+T+ TLI G
Sbjct: 141 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 200

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           F +     + +E+  +M ++ ++ +    +I++  L
Sbjct: 201 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 236



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           + L   M++KG +PD+V +  +  GL +    + AF L ++M++  +      Y   IDG
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LCK  ++ +++ LF+ +       ++  YS LI  LC  GR   A  L   +    +  D
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIE 192
           V T+S +I     +G++ +A  L+ +M + ++ P+++T+ +LI+GF    R++E  ++ E
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
               M  K+  PD    + ++    K
Sbjct: 181 F---MVSKHCFPDVVTYNTLIKGFCK 203



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G  +  + + A  ++ EM+S G+ P+++ +NTL  GL +  ++E+A  +F+ +QR 
Sbjct: 231 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 290

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY I I+G+CK G + +  +LF  L +   + D+ AY+ +I G C+ G  E A
Sbjct: 291 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 350

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
             LF  +     + +   Y+ +I     DG  + + +L  +M     A +  T G
Sbjct: 351 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG 405



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L D M   G   D  TY + ++GLCK G    +  L   +   K E  +  Y+ +IDGLC
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K   ++ AL LF  +    +  +VVTYS +I  L N G+   A  L  DM E  + P+V 
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
           TF  LI  F++  +  +  +L  +M ++++ P     S +++              F +H
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN-------------GFCMH 169

Query: 233 ERQEEVDE 240
           +R +E  +
Sbjct: 170 DRLDEAKQ 177


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 121/215 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + ++ EM  +G+  + V +N L  GLF+    + A ++F EM  DG
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   +DGLCKNG + +++ +F  L+  K E  I  Y+ +I+G+CK+G++E   
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    +  DVV Y+ MI G    G  ++A  LF +M+E+   PN   + TLI   
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  +     EL+ +M+      DAS + +V ++L
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 13/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC +K I  A+ L  +M   G +P+ V  NTL  GLF  ++   A  L D M   G
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ++GLCK G    +  L   +   K E  +  Y+ +IDGLCK   ++ AL
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +VVTYS +I  L N G+   A  L  DM E  + P+V TF  LI  F
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           ++  +  +  +L  +M ++++ P     S +++              F +H+R +E  +
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN-------------GFCMHDRLDEAKQ 382



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
           +I+G CK K ++ ALNL+ EM +KGI+P+VV +++L   L                    
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 42  -----FEIHQVERAF----------KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                F    +  AF          KL+DEM +  +     TY+  I+G C +  + E+ 
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  Y+ LI G CK  R+E  +E+F  + +  LV + VTY+I+I GL
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G  D A ++F +M  + V PN++T+ TL+ G  +  +  K + +   ++   + P  
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501

Query: 207 SIVSIVVDLLAK 218
              +I+++ + K
Sbjct: 502 YTYNIMIEGMCK 513



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL +  +M+  G +P++V  ++L  G     ++  A  L D+M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T T+   I GL  +    E++ L   +    C+ D+  Y  +++GLCK G  ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + + +G L   V+ Y+ +I GL     MD A +LF +ME   + PNV+T+ +LI  
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + PD    S ++D   K
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 114/216 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  + + A NL ++M    ++P V+I+NT+  GL +   ++ A  LF EM+  
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I  LC  G   ++  L   +   K   D+  +S LID   K G+L  A
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  + +  +   +VTYS +I+G     ++D+A  +F  M      P+V+T+ TLI G
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 405

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           F +     + +E+  +M ++ ++ +    +I++  L
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G  +  + + A  ++ EM+S G+ P+++ +NTL  GL +  ++E+A  +F+ +QR 
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 495

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY I I+G+CK G + +  +LF  L +   + D+ AY+ +I G C+ G  E A
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
             LF  +     + +   Y+ +I     DG  + + +L  +M     A +  T G
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG 610



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 104/208 (50%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A+ L+ EM+     P ++  + L   + ++++ +    L ++MQ  G+  +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   +  ++ +   +  L  E +I   S L++G C S R+  A+ L   +   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               + VT++ +IHGL+   +  +A  L   M      P+++T+G +++G  +  +    
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
             LL+KM++  + P   I + ++D L K
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCK 268


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 122/215 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK K++   + L+ +M  +G+  + V + TL  G F+    + A  +F +M  DG
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   +DGLCKNG + +++ +F  L+  K E DI  Y+ + +G+CK+G++E   
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGW 505

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  DV+ Y+ MI G    G  ++A+ LF+ M+E+   P+  T+ TLI   
Sbjct: 506 DLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAH 565

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+      DAS   +V D+L
Sbjct: 566 LRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 600



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 22/262 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+  ++  AL +  +M+  G  P +V  N+L  G    +++  A  L D+M   
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  + GL ++    E+V L   + +  C+ D+  Y  +I+GLCK G  ++A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + + +G + ADVV YS +I  L     +D A +LF +M+   + P+V T+ +LI  
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK---------------------N 219
                  S    LL  M E+ + P+    + ++D  AK                     N
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344

Query: 220 EISLNSL-PSFTVHERQEEVDE 240
            ++ NSL   F +H+R +E  +
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQ 366



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C       A  L S+ML + I P+VV  N+L     +  ++  A KLFDEM +  
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I+G C +  + E+ ++F  +    C  D+  Y+ LI+G CK+ ++   +
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + R  LV + VTY+ +IHG +     D A  +F  M  + V PN++T+ TL+ G 
Sbjct: 401 ELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K + +   +++  + PD    +I+ + + K
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCK 497



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + ++ ALNL++EM +KGI+PDV  +++L   L    +   A +L  +M    
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   ID   K G ++E+ +LF  +     + +I  Y+ LI+G C   RL+ A 
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 365

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +     + DVVTY+ +I+G     ++    +LF DM    +  N +T+ TLIHGF
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + ++      +  +M    V P+    + ++D L KN
Sbjct: 426 FQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 119/272 (43%), Gaps = 41/272 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    I  A+ L  +M+  G +PD V   TL  GLF+ ++   A  L + M   G
Sbjct: 141 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 200

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLCK G    ++ L   +   K E D+  YS +ID LCK   ++ AL
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF------- 174
            LF  +    +  DV TYS +I  L N G+   A  L  DM E  + PNV+TF       
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320

Query: 175 ----------------------------GTLIHGFI---RINEPSKVIELLHKMKEKNVM 203
                                        +LI+GF    R++E  ++  L   M  K+ +
Sbjct: 321 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL---MVSKDCL 377

Query: 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           PD    + +++   K +  ++ +  F    R+
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 110/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  E + ALNL ++M    I+ DVVI++T+   L +   V+ A  LF EM   G
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I  LC  G   ++  L   +   K   ++  ++ LID   K G+L  A 
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  +  ++VTY+ +I+G     ++D+A  +F  M      P+V+T+ TLI+GF
Sbjct: 331 KLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +    +EL   M  + ++ +    + ++
Sbjct: 391 CKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 108/220 (49%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A++L+ EM+     P +V  + L   + ++ + +      ++M+  GV+ +  TY 
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+ LC+   +  ++ +   +  L     I   + L++G C   R+  A+ L   +   
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D VT++ ++HGL+   +  +A  L   M      P+++T+G +I+G  +  EP   
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           + LL+KM++  +  D  I S V+D L K     ++L  FT
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFT 264



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+  G CK  ++E   +L+  +  KG+KPDV+ +NT+  G  +    E A+ LF +M+ D
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   D+ TY   I    ++G    S EL + +R  +   D   Y  + D L   GRL+
Sbjct: 550 GPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML-HDGRLD 606


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 1/240 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK   +  A ++ + M+ +G +PD+V  NTL  G    + V  A KLFD     
Sbjct: 293 ILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAEC 352

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +Y I I G CKN  I E++ LF  +   K   +I  YS LIDGLCKSGR+  A
Sbjct: 353 GITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYA 412

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF ++  G    +V+TY+IM+  L     +DKA +LF  M E  + PNV ++  LI+G
Sbjct: 413 WELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILING 472

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV-HERQEEVD 239
           + +     + + L  +M  +N++PD+   + ++D L K+    ++   F V H+    VD
Sbjct: 473 YCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVD 532



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 108/184 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYCKN  I+ AL+L+++M  K + P++V +++L  GL +  ++  A++LF  +   
Sbjct: 363 ILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDG 422

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY I +D LCK   + +++ELF  +       ++ +Y+ LI+G CKS R++ A
Sbjct: 423 GPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEA 482

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  + R  LV D VTY+ +I GL   G++  A +LF  M +     +VIT+  L   
Sbjct: 483 MNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDA 542

Query: 181 FIRI 184
           F +I
Sbjct: 543 FSKI 546



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 35/276 (12%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK+  +  A +LYS+++ +GI PDV  +  L  G   + Q     +L  +M   
Sbjct: 223 MIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDR 282

Query: 61  GVAADTRTYTIFIDGLCKNGY-----------------------------------IVES 85
            V  +  TY I ID LCK G                                    +VE+
Sbjct: 283 NVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEA 342

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +LF T        D+ +Y+ LI G CK+ R++ AL LF+ +    L  ++VTYS +I G
Sbjct: 343 RKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDG 402

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++  A +LF  + +   +PNVIT+  ++    +I    K IEL + M E+ + P+
Sbjct: 403 LCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPN 462

Query: 206 ASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            S  +I+++   K++    ++  F    R+  V +S
Sbjct: 463 VSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDS 498



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   ++  A  L+      GI PDV  +N L IG  + ++++ A  LF++M    
Sbjct: 329 LMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK 388

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TY+  IDGLCK+G I  + ELF  +       ++  Y+ ++D LCK   ++ A+
Sbjct: 389 LAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAI 448

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ +    L  +V +Y+I+I+G     ++D+A +LF +M    + P+ +T+  LI G 
Sbjct: 449 ELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGL 508

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S   EL + M +     D    +I+ D  +K
Sbjct: 509 CKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSK 545



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C N E+  AL  +  ++++G   D V + TL  GL +I     AF+L  +M+   
Sbjct: 154 IMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQV 213

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y + +DGLCK+G + E+ +L+  +     + D+  Y+CLI G C  G+     
Sbjct: 214 VRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVT 273

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +V TY+I+I  L   G + KAHD+   M E    P+++TF TL+ G+
Sbjct: 274 RLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGY 333

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N+  +  +L     E  + PD    +I++    KN 
Sbjct: 334 CLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNN 372



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 108/211 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K    A++L  +M  +GI P +V  + L      +  +  AF +   + + G   +  
Sbjct: 90  KMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAI 149

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T T  + GLC NG + +++E   ++      LD   Y  LI+GLCK G    A EL H +
Sbjct: 150 TLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKM 209

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              V+  +VV Y++++ GL  DG + +A DL+ D+    + P+V T+  LIHGF  + + 
Sbjct: 210 EGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQW 269

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +V  LL  M ++NV  +    +I++D L K
Sbjct: 270 REVTRLLCDMVDRNVNLNVYTYNILIDALCK 300



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 96/205 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC    +  A ++   +L +G + + +   T+  GL    +V +A +  D +   
Sbjct: 118 ILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQ 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GLCK G   E+ EL   +       ++  Y+ ++DGLCK G +  A
Sbjct: 178 GFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEA 237

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  DV TY+ +IHG    GQ  +   L  DM +  V  NV T+  LI  
Sbjct: 238 RDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDA 297

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     K  ++ + M E+   PD
Sbjct: 298 LCKKGMLGKAHDMRNLMIERGQRPD 322



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK+K I+ A+NL+ EM  + + PD V +N L  GL +  ++  A++LF+ M   
Sbjct: 468 ILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDG 527

Query: 61  GVAADTRTYTIFIDGLCKNGYIV 83
           G   D  TY I  D   K  +++
Sbjct: 528 GPPVDVITYNILFDAFSKIQHVI 550



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 35/208 (16%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           I+ A+ L++ +++    P VV  N +   + ++     A  L  +M   G+     T +I
Sbjct: 59  IDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSI 118

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I+  C  G++  +  +   +     +L+    + ++ GLC +G +  ALE FH      
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALE-FHD----- 172

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                   S++  G   D                      +T+GTLI+G  +I    +  
Sbjct: 173 --------SVVAQGFLLDE---------------------VTYGTLINGLCKIGLTREAF 203

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ELLHKM+ + V P+  I +++VD L K+
Sbjct: 204 ELLHKMEGQVVRPNVVIYNMIVDGLCKD 231


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK   I+  L L+ EM  +G+  + V +NTL  G  +  ++E A KLF EM   
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  +Y I +DGLC NG + +++E+F  +   K ELDI  Y  +I G+C + +++ A
Sbjct: 468 RVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDA 527

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF SLP   +  D   Y+IMI  L     + KA  LF  M E   AP+ +T+  LI  
Sbjct: 528 WDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA 587

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +  ++ +   EL+ +MK      D S V +V+++L+  E+
Sbjct: 588 HLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGEL 628



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C    +  AL L   M+  G KP ++  NTL  GL    +V  A  L D M   G
Sbjct: 164 LLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   ++ +CK+G    ++EL R +     +LD   YS +IDGLCK G L+ A 
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAF 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +      AD++TY+ +I G  N G+ D    L  DM +  ++PNV+TF  LI  F
Sbjct: 284 NLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSF 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  +LL +M ++ + P+    + ++D   K
Sbjct: 344 VKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 113/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C N ++  A+ L   M+  G +P+ V +  +   + +  Q   A +L  +M+   
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+I IDGLCK+G +  +  LF  + I   + DI  Y+ LI G C +GR +   
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +VVT+S++I     +G++ +A  L  +M +  +APN IT+ +LI GF
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + N   + I+++  M  K   PD    +I+++
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 35/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL------------------- 41
           I+I+G CK+  ++ A NL++EM  KG K D++ +NTL  G                    
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 42  --------FEI--------HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                   F +         ++  A +L  EM + G+A +T TY   IDG CK   + E+
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           +++   +    C+ DI  ++ LI+G CK+ R++  LELF  +    ++A+ VTY+ ++ G
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G+++ A  LF +M    V P+++++  L+ G     E  K +E+  K+++  +  D
Sbjct: 448 FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507

Query: 206 ASIVSIVV 213
             I  I++
Sbjct: 508 IGIYMIII 515



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 122/220 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ + K  ++  A  L  EM+ +GI P+ + +N+L  G  + +++E A ++ D M   
Sbjct: 338 VLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISK 397

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+ I I+G CK   I + +ELFR + +     +   Y+ L+ G C+SG+LE+A
Sbjct: 398 GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVA 457

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    +  D+V+Y I++ GL ++G+++KA ++F  +E++ +  ++  +  +IHG
Sbjct: 458 KKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG 517

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               ++     +L   +  K V  DA   +I++  L + +
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKD 557



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK+ +   A+ L  +M  + IK D V ++ +  GL +   ++ AF LF+EM+  G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TY   I G C  G   +  +L R +   K   ++  +S LID   K G+L  A 
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  + +TY+ +I G   + ++++A  +   M      P+++TF  LI+G+
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            + N     +EL  +M  + V+ +    + +V
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLV 445



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 103/205 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+ +M+     P V+  N LF  + +  Q E    L  +M+  G+A    T +I I+
Sbjct: 72  AVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMIN 131

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C+   +  +      +  L  E D   ++ L++GLC   R+  ALEL   +       
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            ++T + +++GL  +G++  A  L   M E    PN +T+G +++   +  + +  +ELL
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            KM+E+N+  DA   SI++D L K+
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKD 276


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 121/215 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + ++ EM  +G+  + V + TL  G F+    + A  +F +M  DG
Sbjct: 362 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I +DGLC NG +  ++ +F  ++    +LDI  Y+ +I+ LCK+G++E   
Sbjct: 422 VHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGW 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +VVTY+ M+ G    G  ++A  LF++M+E+   PN  T+ TLI   
Sbjct: 482 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRAR 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+      DAS   +V ++L
Sbjct: 542 LRDGDEAASAELIKEMRSCGFAGDASTFGLVTNML 576



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I IN +C+  ++  AL +  +M+  G  P +V  N+L  G    +++  A  L D+M   
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  + GL ++    E+V L   + +  C+ D+  Y  +I+GLCK G  ++A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + + +G + ADVV Y+ +I GL     MD A DLF  ME   + P+V T+  LI  
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M EKN+ PD    + ++D   K
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK K ++ A +L+++M +KGIKPDV  +N L   L    +   A +L  +M    
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D   +   ID   K G +VE+ +L+   ++   C  D+ AY+ LI G CK  R+E  
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG 375

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+F  + +  LV + VTY+ +IHG +     D A  +F  M  + V P+++T+  L+ G
Sbjct: 376 MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDG 435

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     + +   M+++++  D    + +++ L K
Sbjct: 436 LCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 1/236 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  E + ALNL ++M    I+ DVVI+NT+  GL +   ++ AF LF++M+  G
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I  LC  G   ++  L   +       D+  ++ LID   K G+L  A 
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 122 ELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L+  + +      DVV Y+ +I G     ++++  ++F +M +  +  N +T+ TLIHG
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHG 400

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
           F +  +      +  +M    V PD    +I++D L  N     +L  F   ++++
Sbjct: 401 FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD 456



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 105/208 (50%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A+ L+ +M+     P +V  + L   + ++++ +    L ++MQ  G++ +  TY+
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           IFI+  C+   +  ++ +   +  L     I   + L++G C   R+  A+ L   +   
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D VT++ ++HGL+   +  +A  L   M      P+++T+G +I+G  +  EP   
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + LL+KM++  +  D  I + ++D L K
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCK 262



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N  +E AL ++  M  + +K D+V + T+   L +  +VE  + LF  +   
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TYT  + G C+ G   E+  LF  ++      +   Y+ LI    + G    +
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            EL   +       D  T+ ++ + L+ DG++DK+   FLDM
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNMLH-DGRLDKS---FLDM 588


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK K I  AL L  EM++ G+ PDVV  +TL  G  +  + E A +LF  M    
Sbjct: 358 LIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHD 417

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T  I +DGL K  +  E++ LFR +  +  EL++  Y+ ++DG+C  G+L  A 
Sbjct: 418 QHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQ 477

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  LP   +  DVV Y+ MI GL  +G +D A +L + MEEN   PN  T+   + G 
Sbjct: 478 ELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGL 537

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  + S+  + L  MK K +  DA+   +++   + N+
Sbjct: 538 LQRYDISRSTKYLLLMKGKGLSADATTTELLISYFSANK 576



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 124/233 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK+  +  ALNL+S M SKGI+PD+V +N+L  GL    + + A  L   M R G
Sbjct: 218 IMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKG 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + +T+ + +D  CK+G I  +  +   +  +  E D+  Y+ +I G C   ++  A+
Sbjct: 278 IMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAV 337

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +     + ++VTYS +IHG      ++KA  L  +M  + + P+V+T+ TLI GF
Sbjct: 338 KVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGF 397

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
            +  +P    EL   M E +  P+    +I++D L K +    ++  F   E+
Sbjct: 398 CKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEK 450



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C         ++   M   G+ P VV   TL  GL     V RA +  D ++  
Sbjct: 111 IIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDM 170

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ-AYSCLIDGLCKSGRLEI 119
           G  +++ TY   I+GLCK G    ++     ++   C+LD+  AYS ++D LCK G +  
Sbjct: 171 GHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCE 230

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL LF  +    +  D+V Y+ +IHGL N G+  +A  L  +M    + PNV TF  L+ 
Sbjct: 231 ALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVD 290

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            F +    S+   ++  M    V PD    + V+ 
Sbjct: 291 NFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVIS 325



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 3/228 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K     ++L   + S GIKPDV     +   L  ++     F +   M + GV     
Sbjct: 83  KMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVV 142

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   I+GLC  G +  +     +L  +  + +   Y  +I+GLCK+G    A+     +
Sbjct: 143 TFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKI 202

Query: 128 P-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
             R   +  V+ YS ++  L  DG + +A +LF  M    + P+++ + +LIHG      
Sbjct: 203 KGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGR 262

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI--SLNSLPSFTVH 232
             +   LL  M  K +MP+    +++VD   K+ +     ++  F VH
Sbjct: 263 WKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVH 310



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVI-HNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +ING CK  +  GA+    ++  +    DVVI ++T+   L +   V  A  LF  M   
Sbjct: 182 IINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSK 241

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I GLC  G   E+  L   +       ++Q ++ L+D  CK G +  A
Sbjct: 242 GIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRA 301

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  DVVTY+ +I G     QM  A  +F  M      PN++T+ +LIHG
Sbjct: 302 KTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHG 361

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +    +K + LL +M    + PD    S ++    K
Sbjct: 362 WCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCK 399



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G  K +    A++L+ EM    ++ +VVI+N +  G+    ++  A +LF  +   
Sbjct: 427 IILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSK 486

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  I GLCK G + ++  L   +    C  +   Y+  + GL +   +  +
Sbjct: 487 GIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRS 546

Query: 121 LELFHSLPRGVLVADVVTYSIMI 143
            +    +    L AD  T  ++I
Sbjct: 547 TKYLLLMKGKGLSADATTTELLI 569


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK + I+ A +L+ EML KG+ PDVV +NT+  GLF+  +   A +L+  M    
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I I+GLCKN ++ E+ ++F +L     +LDI   + +I  L K GR E A+
Sbjct: 583 TQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAM 642

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++    LV DV TY ++   L  +G +++  +LF  MEEN  APN      L+   
Sbjct: 643 DLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWL 702

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
           +   + ++    L K+ EKN   +AS  S+++ + ++ E      SLP
Sbjct: 703 LHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSRGEYQQLAKSLP 750



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E A  L+ E+L +GI+ D V  NTL   L    +V  A +L D M R G
Sbjct: 418 LVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVG 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y   +DG C  G I E+ +L   +  +  + D   Y+ L+ G CK+ R++ A 
Sbjct: 478 VRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAY 537

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  DVVTY+ ++HGL+  G+  +A +L+L M  +    N+ T+  +I+G 
Sbjct: 538 SLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGL 597

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   +  ++ H +  K++  D    +I++  L K
Sbjct: 598 CKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLK 634



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A+  +++M+ +G+ PD+ + ++L  GL  + + E+A +LF E+   G
Sbjct: 383 LIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT  +   +  LC+ G ++E+  L   +  +    D+ +Y+ L+DG C +GR++ A 
Sbjct: 443 IRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D VTY+ ++HG     ++D A+ LF +M    + P+V+T+ T++HG 
Sbjct: 503 KLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGL 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S+  EL   M       +    +I+++ L KN
Sbjct: 563 FQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKN 600



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI---KPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           IL+ G+C  K  E AL L S M   G     P+VV + T+  GL +   V+RA  +F  M
Sbjct: 169 ILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHM 228

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              GV  +  TYT  I G    G   E V++ + +     + D   Y+ L+D LCK+GR 
Sbjct: 229 IDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRC 288

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGT 176
             A  +F S+ R  +  +V  Y I++HG   +G + + H  FLD M  N V+P+   F  
Sbjct: 289 TEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHS-FLDLMVGNGVSPDHHIFNI 347

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   + +     + + +  KM+++ + P+      ++D L K
Sbjct: 348 MFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCK 389



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 35/250 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDV------------------------------ 31
           L+   C+   +  A  L   ML  G++PDV                              
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIG 512

Query: 32  -----VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                V +NTL  G  +  +++ A+ LF EM   G+  D  TY   + GL + G   E+ 
Sbjct: 513 LKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAK 572

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           EL+ ++   + +++I  Y+ +I+GLCK+  ++ A ++FHSL    L  D+ T +IMI  L
Sbjct: 573 ELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGAL 632

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+ + A DLF  +    + P+V T+  +    I+     ++ EL   M+E    P++
Sbjct: 633 LKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNS 692

Query: 207 SIVSIVVDLL 216
            +++ +V  L
Sbjct: 693 RMLNALVRWL 702



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 36  TLFIGLF-EIHQVERAFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNGYIVESVE-LFRTL 92
           T+ IG F  + +++  F  F  + + G    DT  ++  + GLC    + E+ + L R +
Sbjct: 96  TILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRM 155

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR---GVLVADVVTYSIMIHGLYND 149
               C  D+ +YS L+ G C   R E ALEL   +     G    +VVTY+ +I GL   
Sbjct: 156 PEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKA 215

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
             +D+A  +F  M +  V PN  T+  LIHG++ I +  +V+++L +M    + PD  I 
Sbjct: 216 QMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIY 275

Query: 210 SIVVDLLAKN 219
           ++++D L KN
Sbjct: 276 AVLLDYLCKN 285



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 101/214 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CKN     A N++  ++ KGIKP+V I+  L  G      +       D M  +
Sbjct: 277 VLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGN 336

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D   + I      K   I E++ +F  +R  +   +I  Y  LID LCK GR++ A
Sbjct: 337 GVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDA 396

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F+ +    +  D+  +S +++GL    + +KA +LF ++ +  +  + + F TL+  
Sbjct: 397 VLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCN 456

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R     +   L+  M    V PD    + +VD
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVD 490



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 102/205 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+   Y K   I+ A++++ +M  + + P++V +  L   L ++ +V+ A   F++M  +
Sbjct: 347 IMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDE 406

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   ++  + GLC      ++ ELF  +      LD   ++ L+  LC+ GR+  A
Sbjct: 407 GMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEA 466

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +  DV++Y+ ++ G    G++D+A  L   +    + P+ +T+ TL+HG
Sbjct: 467 QRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHG 526

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + +         L  +M  K + PD
Sbjct: 527 YCKARRIDDAYSLFREMLMKGLTPD 551



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CKN  ++ A  ++  + SK ++ D+   N +   L +  + E A  LF  +   
Sbjct: 592 IIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAY 651

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY +  + L K G + E  ELF  +       + +  + L+  L   G +  A
Sbjct: 652 GLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRA 711

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
                 L       +  T S++I  +Y+ G+  +
Sbjct: 712 GAYLSKLDEKNFSLEASTTSMLI-SIYSRGEYQQ 744


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 118/197 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING  K K ++ AL+L+ EM  KGI PD V +N+L  GL ++ ++  A++L DEM  +
Sbjct: 344 IMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNN 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ AD  TY   ID LCKN +I +++ L + ++    +  +  Y+ LIDGLCK GRL+ A
Sbjct: 404 GIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNA 463

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       +  TY+IMI+GL  +G  ++A  L   ME N + P+ +T+ T+I  
Sbjct: 464 QDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRA 523

Query: 181 FIRINEPSKVIELLHKM 197
             R +E  K  +LL +M
Sbjct: 524 LFRKDENEKAEKLLREM 540



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK+K +  A  LYSEM++K I PDVV  N+L +G   + Q++ AF LF EM   
Sbjct: 204 IIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLK 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T++I +D LCK+G I  +  +   +       D+  YS L+DG C    +  A
Sbjct: 264 NINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKA 323

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F ++ R  +     +Y+IMI+GL     +D+A  LF +M    +AP+ +T+ +LI G
Sbjct: 324 KHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDG 383

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             ++   S   +L+ +M    +  D    + ++D+L KN 
Sbjct: 384 LCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNH 423



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 112/211 (53%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           N     A++L  ++  KGI P +V  N L      + ++  AF +F ++ + G    T T
Sbjct: 72  NNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTIT 131

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           +   I+G+C NG + E++     +  L   LD  +Y  LI+GLCK G    AL++   + 
Sbjct: 132 FNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIE 191

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
             ++  DVV Y+I+I+ L  D  +  A+ L+ +M    ++P+V+TF +LI GF  + +  
Sbjct: 192 GKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLK 251

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   L H+M  KN+ PD    SI+VD L K+
Sbjct: 252 EAFGLFHEMVLKNINPDVYTFSILVDALCKD 282



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   E+  A +++S M   G+ P    +N +  GL +I  V+ A  LF EM   G
Sbjct: 310 LMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT TY   IDGLCK G I  + +L   +       DI  Y+ LID LCK+  ++ A+
Sbjct: 370 IAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAI 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +   + TY+I+I GL   G++  A D+F D+     + N  T+  +I+G 
Sbjct: 430 ALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGL 489

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNE 220
            +    ++   LL KM+   ++PDA +  +I+  L  K+E
Sbjct: 490 CKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDE 529



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C N +++ AL+ +  +++ G   D V + TL  GL +I +   A ++  +++   
Sbjct: 135 LINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKL 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y I I+ LCK+  + ++ +L+  +   +   D+  ++ LI G C  G+L+ A 
Sbjct: 195 VNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAF 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +    +  DV T+SI++  L  DG + +A ++   M +  V P+V+T+ +L+ G+
Sbjct: 255 GLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGY 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +NE +K   +   M    V P A   +I+++ L K
Sbjct: 315 CLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGK 351



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK+  I  A N+ + M+ +G+ PDVV +++L  G   +++V +A  +F  M R 
Sbjct: 274 ILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRL 333

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA    +Y I I+GL K   + E++ LF+ +       D   Y+ LIDGLCK GR+  A
Sbjct: 334 GVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYA 393

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    + AD++TY+ +I  L  +  +DKA  L   +++  + P++ T+  LI G
Sbjct: 394 WQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDG 453

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +        ++   +  K    +A   +I+++ L K
Sbjct: 454 LCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCK 491



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E   AL +  ++  K +  DVV++N +   L +   V  A++L+ EM    
Sbjct: 170 LINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKR 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  T+   I G C  G + E+  LF  + +     D+  +S L+D LCK G +  A 
Sbjct: 230 ISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAK 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  ++ DVVTYS ++ G     +++KA  +F  M    VAP+  ++  +I+G 
Sbjct: 290 NMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGL 349

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I    + + L  +M  K + PD    + ++D L K
Sbjct: 350 GKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCK 386



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C   +++ A  L+ EM+ K I PDV   + L   L +   + RA  +   M + G
Sbjct: 240 LILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  +DG C    + ++  +F T+  L       +Y+ +I+GL K   ++ AL
Sbjct: 300 VIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEAL 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D VTY+ +I GL   G++  A  L  +M  N +  +++T+ +LI   
Sbjct: 360 SLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +   K I L+ K+K++ + P     +I++D L K
Sbjct: 420 CKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCK 456


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK+ ++   + L+ E++ +G  PDVV +NTL   L +   +E A +L  +M   G
Sbjct: 43  IINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRG 102

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
              +  TY++ I+GLCK G I E+ EL + +    C++  +I  Y+  +DGLCK      
Sbjct: 103 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE 162

Query: 120 ALELFHSLPRGVL--VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           A EL  SL  G L    D VT+S +I GL   GQ+D+A  +F DM      PNVIT+  L
Sbjct: 163 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNAL 222

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++G  + ++  +   ++  M +K V PD    S++VD   K
Sbjct: 223 VNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCK 263



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 4/208 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  ++E A  L+ +M S+G  P+VV ++ L  GL ++ +++ A +L  EM R  
Sbjct: 78  LIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 137

Query: 62  --VAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
             V  +  TY  F+DGLCK     E+ EL R+LR   L+   D   +S LIDGLCK G++
Sbjct: 138 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQI 197

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  +F  +  G  V +V+TY+ +++GL    +M++AH +   M +  V P+VIT+  L
Sbjct: 198 DEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 257

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +  F + +   + +ELLH M  +   P+
Sbjct: 258 VDAFCKASRVDEALELLHGMASRGCTPN 285



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 110/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK    E A  L+ EM++K ++PDV+    L  GL +  QVE A  + D M   
Sbjct: 296 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 355

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   + GLCK+G I E+ +    +    C  D   Y  L+  LC++ R + A
Sbjct: 356 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 415

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   L       D VTY+I++ GL+  G+ ++A  +  +M      P+  TF     G
Sbjct: 416 LQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSG 475

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R    +  +ELL  +  K ++PDA+  S ++D + ++
Sbjct: 476 LHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRS 514



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  ++E A  +   M+ KG+ PDV+ ++ L     +  +V+ A +L   M   G
Sbjct: 222 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRG 281

Query: 62  VAA-----DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
                   D  T+ I I G CK G   ++  LF  +     + D+  +  LIDGLCK+G+
Sbjct: 282 CTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 341

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +E A ++   +    +  +VVTY+ ++HGL   G++++A     +M  +   P+ IT+G+
Sbjct: 342 VEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGS 401

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L++   R +     ++L+ ++K     PD    +I+VD L K+
Sbjct: 402 LVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKS 444



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 5/211 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDV-----VIHNTLFIGLFEIHQVERAFKLFD 55
           +L++ +CK   ++ AL L   M S+G  P+V     V  N L  G  +    E+A  LF+
Sbjct: 256 VLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFE 315

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM    +  D  T+   IDGLCK G +  + ++   +  L    ++  Y+ L+ GLCKSG
Sbjct: 316 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 375

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R+E A +    +     V D +TY  +++ L    + D A  L  +++     P+ +T+ 
Sbjct: 376 RIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYN 435

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            L+ G  +  +  + I +L +M  K   PD+
Sbjct: 436 ILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 466



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 69  YTIFIDGLCKNGYIVESVELFRT-LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           Y I +  LC+ G    ++E+FR  +        I  Y+ +I+GLCKS  L   +ELF  L
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DVVTY+ +I  L   G +++A  L  DM      PNV+T+  LI+G  ++   
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 188 SKVIELLHKMKEK--NVMPDASIVSIVVDLLAKNEIS 222
            +  EL+ +M  K  +V+P+    +  +D L K  ++
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMT 160



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK+  IE A     EM+S G  PD + + +L   L    + + A +L  E++  G
Sbjct: 367 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 426

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY I +DGL K+G   +++ +   +     + D   ++    GL +SG L   +
Sbjct: 427 WDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTM 486

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           EL   +    ++ D  T S ++  +   G++D    +  + E
Sbjct: 487 ELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G  K+ + E A+ +  EM+ KG +PD       F GL     +    +L   +   
Sbjct: 436 ILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAK 495

Query: 61  GVAADTRTYTIFIDGLCKNGYI 82
           G+  D  T +  +D +C++G +
Sbjct: 496 GMLPDATTCSSILDWVCRSGKL 517


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   I+ A + + +MLS GI P VV +NT+  GLF+  +   A +L+  M   G
Sbjct: 559 LLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ++GLCK+  + E++++F+ L     +L+I  ++ +I  L K GR E A+
Sbjct: 619 TKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAM 678

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++P   LV +VVTY +++  L  +G +++   LF  ME+N  APN      L+   
Sbjct: 679 DLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 738

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
           +   + S+    L K+ E+N   +AS  S+++ + + +E      SLP
Sbjct: 739 LHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLP 786



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 129/237 (54%), Gaps = 7/237 (2%)

Query: 8    KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
            K + I+ A +L+ EML KG+ PDVV +NT+  GLF+  +   A +L+  M       +  
Sbjct: 803  KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY 862

Query: 68   TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            TY I ++GLCK+  + E+ ++F++L     +L+I  ++ +I  L K GR E A++LF ++
Sbjct: 863  TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 922

Query: 128  PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            P   LV DVVTY ++   L  +G +++   LFL ME++    +      L+   ++  + 
Sbjct: 923  PANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDI 982

Query: 188  SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLPSFTVHERQEEVDESN 242
            S+    L K+ EKN   +AS  S ++ L ++ E      SLP     E+   ++E+N
Sbjct: 983  SRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSLP-----EKYRLLNEAN 1034



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+    +++   NL+ EM+ +GI PDVV + T+  GL +    +RA  +F +M  +G
Sbjct: 209 VINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNG 268

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G    G   E V +   +     + +   Y  L++ LCK+GR   A 
Sbjct: 269 VKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREAR 328

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+    +   V TY IM+HG    G + + HDL   M  N ++PN   F      +
Sbjct: 329 FFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAY 388

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     K +++ +KM+++ + PDA     ++D L K
Sbjct: 389 AKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCK 425



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A   +++M+++G+ PD+V+ ++L  GL  + + E+  +LF EM   G
Sbjct: 419 LIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   +  LCK G ++E   L  ++  +    D+ +Y+ LIDG C +G ++ A 
Sbjct: 479 IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEAS 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  +Y+ ++HG    G++D A+  F  M  N + P V+T+ T++HG 
Sbjct: 539 KLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGL 598

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S+  EL   M       D    +I+++ L K+
Sbjct: 599 FQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKS 636



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           ILI  +C+   +E     +  +L  G + D ++ N L  GL +  +V  A   L   M  
Sbjct: 99  ILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPE 158

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   DT +Y I + GLC      E++EL   +   ++  C  ++ +YS +I+G    G+
Sbjct: 159 LGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQ 218

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++    LF  +    +  DVVTY+ +I GL      D+A  +F  M +N V PN+ T+  
Sbjct: 219 VDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNC 278

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LIHG++ I +  +V+ +L +M      P+      +++ L KN
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKN 321



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E    L+ EML+ GI P++V  NT+   L +  +V    +L D ++  G
Sbjct: 454 LVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG 513

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y   IDG C  G I E+ +L   +  +  + D  +Y+ L+ G CK+GR++ A 
Sbjct: 514 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY 573

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    +   VVTY+ ++HGL+   +  +A +L+L+M  +    ++ T+  +++G 
Sbjct: 574 SHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGL 633

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + I++   +  K +  +    +I++  L K
Sbjct: 634 CKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLK 670



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  CKN     A   +  M+ KGIKP V  +  +  G      +     L + M  +G
Sbjct: 314 LLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +   + IF     K G I +++++F  +R      D  +Y  LID LCK GR++ A 
Sbjct: 374 ISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAE 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    +  D+V +S +++GL    + +K  +LF +M    + PN++ F T++   
Sbjct: 434 VKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNL 493

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  ++++ +  M    V PD    + ++D
Sbjct: 494 CKEGRVMEGQRLVDSIECM---GVRPDVISYNTLID 526



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 7/202 (3%)

Query: 11  EIEGALNLYSEMLSK---GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           E E  ++L++ M+      + P+   ++ L      +  +E  F  F  + + G   D  
Sbjct: 71  ESETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHI 130

Query: 68  TYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
                ++GLC    + E+++ L + +  L C  D  +Y+ L+ GLC   R E ALEL H 
Sbjct: 131 VINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHM 190

Query: 127 LPRGVLVA---DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +    + +   +VV+YS +I+G + +GQ+DK ++LFL+M +  + P+V+T+ T+I G  +
Sbjct: 191 MADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCK 250

Query: 184 INEPSKVIELLHKMKEKNVMPD 205
                +   +  +M +  V P+
Sbjct: 251 AQLFDRAEAVFQQMIDNGVKPN 272



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFE-------IHQVERAFKLFDEMQRD---GVAA 64
           AL L+ E+L       VV  N L   +           + E    LF+ M RD    VA 
Sbjct: 33  ALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVAP 92

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE-L 123
           +  TY+I I   C+ G++      F  +      +D    + L++GLC   R+  A++ L
Sbjct: 93  NRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVL 152

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV---APNVITFGTLIHG 180
              +P    + D V+Y+I++ GL N+ + ++A +L   M ++ V    PNV+++ T+I+G
Sbjct: 153 LQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVING 212

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F    +  K   L  +M ++ + PD    + V+D L K ++
Sbjct: 213 FFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQL 253



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 109/252 (43%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK +  + A  ++ +M+  G+KP++  +N L  G   I + +   ++ +EM   G
Sbjct: 244 VIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC--------- 112
              +  TY   ++ LCKNG   E+   F ++     +  +  Y  ++ G           
Sbjct: 304 PKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMH 363

Query: 113 --------------------------KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                     K G ++ A+++F+ + +  L  D V+Y  +I  L
Sbjct: 364 DLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDAL 423

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A   F  M    V P+++ F +L++G   +++  KV EL  +M    + P+ 
Sbjct: 424 CKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNI 483

Query: 207 SIVSIVVDLLAK 218
              + ++  L K
Sbjct: 484 VFFNTILCNLCK 495



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 97/204 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I  + Y K   I+ A++++++M  +G+ PD V +  L   L ++ +V+ A   F++M  +
Sbjct: 383 IFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINE 442

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   ++  + GLC      +  ELF  +  +    +I  ++ ++  LCK GR+   
Sbjct: 443 GVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEG 502

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  S+    +  DV++Y+ +I G    G +D+A  L   M    + P+  ++ TL+HG
Sbjct: 503 QRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHG 562

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           + +            KM    + P
Sbjct: 563 YCKAGRIDSAYSHFRKMLSNGITP 586



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 101/206 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++GY     +    +L + M++ GI P+  I N  F    +   +++A  +F++M++ 
Sbjct: 348 IMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQ 407

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  +Y   ID LCK G + ++   F  +       DI  +S L+ GLC   + E  
Sbjct: 408 GLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKV 467

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    +  ++V ++ ++  L  +G++ +   L   +E   V P+VI++ TLI G
Sbjct: 468 EELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDG 527

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
                   +  +LL  M    + PD+
Sbjct: 528 HCLAGTIDEASKLLEGMVSVGLKPDS 553



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 104/247 (42%), Gaps = 28/247 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK+  ++ A+ ++  + SKG++ +++  N +   L +  + E A  LF  +  +
Sbjct: 628 IILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 687

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + ++ L + G + E   LF  +       + Q  + L+  L   G +  A
Sbjct: 688 GLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 747

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYND----------------------------GQM 152
                 L       +  T S++I    +D                             ++
Sbjct: 748 GAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRI 807

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           D A+ LF +M    + P+V+T+ T++HG  +    S+  EL   M       +    +I+
Sbjct: 808 DDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNII 867

Query: 213 VDLLAKN 219
           ++ L K+
Sbjct: 868 LNGLCKS 874



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK+  ++ A  ++  + SKG++ +++  N +   L +  + E A  LF  +  +
Sbjct: 866 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 925

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY +  + L + G + E   LF T+      LD +  + L+  L + G +  A
Sbjct: 926 GLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRA 985


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   ++ A+ L S+M  K + P  V +N+L  GL +  +   A+ L +EM   
Sbjct: 86  VLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  I G CK+    +++ +F  L       D+  YSCLIDGLCK GRL+ A
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ++LF  + + G  + + VTY+ +I G    G+MD+A +L   M E   +P+V+T+ TL++
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 264

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEIS 222
           GF ++       +LL++M  K + PD    + ++D L + N +S
Sbjct: 265 GFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLS 308



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK K +E AL    +M+SKG  PDV  +  +   L   +++  A K  +EM    
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR---------------------------- 93
           +  +  TYT+ IDGLCK G + E+V L   +R                            
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYD 136

Query: 94  ------ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
                    C  DI  Y+ LI G CKS + + AL +F  L       DVVTYS +I GL 
Sbjct: 137 LLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLC 196

Query: 148 NDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            +G++ +A DLF  M +  +  PN +T+ +LI GF R+ +  + + LL +M E    PD 
Sbjct: 197 KEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDV 256

Query: 207 SIVSIVVDLLAK 218
              + +++   K
Sbjct: 257 VTYTTLMNGFCK 268



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 127/253 (50%), Gaps = 34/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+K+ + AL ++ +++++G +PDVV ++ L  GL +  +++ A  LF  M + G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 62  VA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T TY   I G C+ G + E++ L   +       D+  Y+ L++G CK  RL+ A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA------------------HDLFLD- 161
            +L + + R  L  DVVT++ ++ GL  + ++  A                  ++  LD 
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 162 --------------MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
                         +EE    PNV++F  +I G  ++N  S+ +EL+ + + +   PD  
Sbjct: 336 YCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 395

Query: 208 IVSIVVDLLAKNE 220
           + + V+D L + +
Sbjct: 396 MYTTVIDGLCREK 408



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 114/217 (52%), Gaps = 11/217 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+  +++ A+NL   M   G  PDVV + TL  G  ++ +++ A+ L ++M R G
Sbjct: 227 LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           +  D  T+T  +DGLC+   + ++V +   +R   C   +  Y+ ++DG C++ +LE A 
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 121 ---LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              LE     P      +VV+++IMI GL    +  +A +L  +       P+V+ + T+
Sbjct: 347 KFMLEEMDCPP------NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTV 400

Query: 178 IHGFIRINEPSKVIELLHKM-KEKNVMPDASIVSIVV 213
           I G  R  +  +   +  KM +E   +P++   S ++
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLI 437



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 38/233 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+CK   ++ A +L ++M  KG+ PDVV   +L  GL   +++  A  +  EM+R  
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 62  VAADTRTYTIFIDG---------------------------------LCKNGYIVESVEL 88
            +    TY   +DG                                 LCK     E++EL
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMEL 381

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLY 147
               R  +C  D+  Y+ +IDGLC+  +++ A  ++   L     + + +TYS +I GL 
Sbjct: 382 VEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLC 441

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           N G +D+A        E    PN+ T+  LI  F + N      ELL  M ++
Sbjct: 442 NAGMLDRARGYI----EKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 1/195 (0%)

Query: 24  SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
           +     D V + +L  GL ++ ++E+A     +M   G   D  TYT  I  LC    + 
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E+ +    +       ++  Y+ LIDGLCK GR++ A+ L   + R   V   VTY+ +I
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLI 122

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            GL    +  +A+DL  +M  +   P++ T+ TLI GF +  +    + +  ++  +   
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 204 PDASIVSIVVDLLAK 218
           PD    S ++D L K
Sbjct: 183 PDVVTYSCLIDGLCK 197



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 1/170 (0%)

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +  +AD  TYT  I GLCK   + +++     +       D+  Y+ +I  LC   RL  
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +    +    L  +VVTY+++I GL   G++D+A  L   M +  V P  +T+ +LI 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLIS 123

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           G  +    S+  +LL +M     +PD    + ++    K++ S ++L  F
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVF 173



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           I+I G CK      A+ L  E   +   PDVV++ T+  GL    +V+ A +++ +M + 
Sbjct: 364 IMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEE 423

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   ++ TY+  I GLC  G +  +    R      C  +I  Y+ LID   K+ R E 
Sbjct: 424 PGCLPNSITYSTLITGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDED 479

Query: 120 ALELFHSL 127
           A EL   +
Sbjct: 480 ARELLDDM 487


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   ++ A+ L S+M  K + P  V +N+L  GL +  +   A+ L +EM   
Sbjct: 86  VLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  I G CK+    +++ +F  L       D+  YSCLIDGLCK GRL+ A
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ++LF  + + G  + + VTY+ +I G    G+MD+A +L   M E   +P+V+T+ TL++
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 264

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEIS 222
           GF ++       +LL++M  K + PD    + ++D L + N +S
Sbjct: 265 GFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLS 308



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK K +E AL    +M+SKG  PDV  +  +   L   +++  A K  +EM    
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR---------------------------- 93
           +  +  TYT+ IDGLCK G + E+V L   +R                            
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYD 136

Query: 94  ------ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
                    C  DI  Y+ LI G CKS + + AL +F  L       DVVTYS +I GL 
Sbjct: 137 LLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLC 196

Query: 148 NDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            +G++ +A DLF  M +  +  PN +T+ +LI GF R+ +  + + LL +M E    PD 
Sbjct: 197 KEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDV 256

Query: 207 SIVSIVVDLLAK 218
              + +++   K
Sbjct: 257 VTYTTLMNGFCK 268



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 127/253 (50%), Gaps = 34/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+K+ + AL ++ +++++G +PDVV ++ L  GL +  +++ A  LF  M + G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 62  VA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T TY   I G C+ G + E++ L   +       D+  Y+ L++G CK  RL+ A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA------------------HDLFLD- 161
            +L + + R  L  DVVT++ ++ GL  + ++  A                  ++  LD 
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 162 --------------MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
                         +EE    PNV++F  +I G  ++N  S+ +EL+ + + +   PD  
Sbjct: 336 YCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 395

Query: 208 IVSIVVDLLAKNE 220
           + + V+D L + +
Sbjct: 396 MYTTVIDGLCREK 408



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 114/217 (52%), Gaps = 11/217 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+  +++ A+NL   M   G  PDVV + TL  G  ++ +++ A+ L ++M R G
Sbjct: 227 LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           +  D  T+T  +DGLC+   + ++V +   +R   C   +  Y+ ++DG C++ +LE A 
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 121 ---LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              LE     P      +VV+++IMI GL    +  +A +L  +       P+V+ + T+
Sbjct: 347 KFMLEEMDCPP------NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTV 400

Query: 178 IHGFIRINEPSKVIELLHKM-KEKNVMPDASIVSIVV 213
           I G  R  +  +   +  KM +E   +P++   S +V
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLV 437



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 38/233 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+CK   ++ A +L ++M  KG+ PDVV   +L  GL   +++  A  +  EM+R  
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 62  VAADTRTYTIFIDG---------------------------------LCKNGYIVESVEL 88
            +    TY   +DG                                 LCK     E++EL
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMEL 381

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLY 147
               R  +C  D+  Y+ +IDGLC+  +++ A  ++   L     + + +TYS ++ GL 
Sbjct: 382 VEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLC 441

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           N G +D+A        E    PN+ T+  LI  F + N      ELL  M ++
Sbjct: 442 NAGMLDRARGYI----EKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 1/195 (0%)

Query: 24  SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
           +     D V + +L  GL ++ ++E+A     +M   G   D  TYT  I  LC    + 
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E+ +    +       ++  Y+ LIDGLCK GR++ A+ L   + R   V   VTY+ +I
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLI 122

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            GL    +  +A+DL  +M  +   P++ T+ TLI GF +  +    + +  ++  +   
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 204 PDASIVSIVVDLLAK 218
           PD    S ++D L K
Sbjct: 183 PDVVTYSCLIDGLCK 197



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 1/170 (0%)

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +  +AD  TYT  I GLCK   + +++     +       D+  Y+ +I  LC   RL  
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +    +    L  +VVTY+++I GL   G++D+A  L   M +  V P  +T+ +LI 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLIS 123

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           G  +    S+  +LL +M     +PD    + ++    K++ S ++L  F
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVF 173



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           I+I G CK      A+ L  E   +   PDVV++ T+  GL    +V+ A +++ +M + 
Sbjct: 364 IMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEE 423

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   ++ TY+  + GLC  G +  +    R      C  +I  Y+ LID   K+ R E 
Sbjct: 424 PGCLPNSITYSTLVTGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDED 479

Query: 120 ALELFHSL 127
           A EL   +
Sbjct: 480 ARELLDDM 487


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN E + A  L+  M S    P +V +NTL  GLF   ++ERA  LF EM  D 
Sbjct: 16  LIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEML-DR 74

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  ++ I + GLC+ G I  ++E FR +   +C  ++  YS LIDGLCK+ R+  A+
Sbjct: 75  RSHDVISFNILVTGLCRAGKIETALEFFRKMDD-RCSPNVITYSVLIDGLCKANRVSQAV 133

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  S+       DV+TY+I++ GL  + ++  A ++  +M +    PN++T+ +L+HG 
Sbjct: 134 ELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGL 193

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R    S  + L+  M  +   P+      ++D L K
Sbjct: 194 CRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   ++ A  + ++M+ KG  PD++I+N L  GL +  QV+ +  L       G
Sbjct: 224 LIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 283

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I GLC++  + E+  L   ++   C  D+  YS LIDGLCK+G+++ A 
Sbjct: 284 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 343

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +      ADVVTYS +I GL   G++D+AH L   M      P+ +T+ +LI G 
Sbjct: 344 DLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 403

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +N   + IEL+ +M+  N  P A   +I++  + + E
Sbjct: 404 CDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 442



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ ++ L    +S GIKPDVV ++++  GL   ++++ A +L   ++  
Sbjct: 258 MLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR 317

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  IDGLCK G + E+ +L+  +    C+ D+  YS LIDGLCK+GR++ A
Sbjct: 318 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEA 377

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R       +TY+ +I GL +   +D+A +L  +ME +  AP+ +T+  LIHG
Sbjct: 378 HLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHG 437

Query: 181 FIRINE-PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R+    S  ++   +M +  V+PD    SI+++ L K++
Sbjct: 438 MCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSK 478



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   +  A+ L   M ++G  PDV+ +  L  GL +  +V  A+++  EM   
Sbjct: 118 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   + GLC+   + +++ L R +    C  ++  Y  LIDGLCK GR++ A
Sbjct: 178 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 237

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D++ Y+++I+GL    Q+D++  L        + P+V+T+ ++I+G
Sbjct: 238 CAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYG 297

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   +   LL  +K +   PD  + S ++D L K
Sbjct: 298 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+  +IE AL  + +M  +   P+V+ ++ L  GL + ++V +A +L + M+  
Sbjct: 84  ILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMKAR 142

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TYTI +DGLCK   +  + E+ R +    C  ++  Y+ L+ GLC++ R+  A
Sbjct: 143 GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDA 202

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +       +VVTY  +I GL   G++  A  +  DM +    P+++ +  LI+G
Sbjct: 203 LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLING 262

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + ++  + I LL +     + PD    S V+  L ++
Sbjct: 263 LCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS 301



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G   +  TY   IDGLCKN     + ELF  ++ ++C   +  Y+ L+DGL ++G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 117 LEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           LE A+ LF   L R     DV++++I++ GL   G+++ A + F  M++   +PNVIT+ 
Sbjct: 61  LERAMALFQEMLDR--RSHDVISFNILVTGLCRAGKIETALEFFRKMDDRC-SPNVITYS 117

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            LI G  + N  S+ +ELL  MK +   PD    +I+VD L K
Sbjct: 118 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCK 160


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 118/205 (57%), Gaps = 2/205 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK K ++ A+NL  EML K + PD V +++L  GL ++ ++     L  EM   
Sbjct: 295 IIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHR 354

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+  TY   +DGLCKN  + +++ LF  ++    + +   Y+ LIDGLCK GRL+  
Sbjct: 355 GQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKG 414

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             LF H L +G  + DV TY++MI GL  +G  D+A  +   ME+N   PN +TF  +I 
Sbjct: 415 QALFQHLLVKGYCI-DVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIR 473

Query: 180 GFIRINEPSKVIELLHKMKEKNVMP 204
             +  +E  K  +LLH+M  K ++P
Sbjct: 474 SLLEKDENDKAEKLLHEMIAKGLLP 498



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 118/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK  E   A+ L   +  +  +PDVV+++T+  GL +   V+ A+ L+ EM   
Sbjct: 120 ILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNAR 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TYT  I G C  G ++E+  L   + +     +I  Y+ LID LCK G+++ +
Sbjct: 180 GIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKES 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  DVV YSI++ G    G++ KA  +FL M +  V P+V ++  +I+G
Sbjct: 240 KNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIING 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + + LL +M  KN++PD    S ++D L K
Sbjct: 300 LCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCK 337



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K ++ A +LYSEM ++GI PDV+ + TL  G     Q+  AF L +EM    
Sbjct: 156 IIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKN 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ID LCK G + ES  L   +     + D+  YS L+DG C  G ++ A 
Sbjct: 216 INPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAK 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +  +  DV +Y+I+I+GL    ++D+A +L  +M    + P+ +T+ +LI G 
Sbjct: 276 QIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGL 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++   + +++L  +M  +    +    + ++D L KN+
Sbjct: 336 CKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQ 374



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  +++ + NL + M  KG+KPDVVI++ L  G   + +V++A ++F  M + G
Sbjct: 226 LIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y I I+GLCK   + E++ L R +       D   YS LIDGLCK GR+   L
Sbjct: 286 VNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTIL 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +      A++VTY+ ++ GL  +  +DKA  LF+ M+E  + PN  T+  LI G 
Sbjct: 346 DLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGL 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     K   L   +  K    D    ++++  L K
Sbjct: 406 CKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCK 442



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 114/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C   ++  + ++  ++L  G +P+ +I NTL  GL    +V+++    D++   
Sbjct: 50  ILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQ 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y I ++GLCK G    +++L RT+       D+  YS +IDGLCK   ++ A
Sbjct: 110 GFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEA 169

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  DV+TY+ +I G    GQ+ +A  L  +M    + PN+ T+ TLI  
Sbjct: 170 YDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDT 229

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +   LL  M +K V PD  I SI++D
Sbjct: 230 LCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMD 263



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 108/211 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K     ++L  +M +KGI PD+V  + L      + Q+  +F +  ++ + G   +T 
Sbjct: 22  KMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTI 81

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
                + GLC  G + +S+     +     ++D  +Y  L++GLCK G    A++L  ++
Sbjct: 82  ILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTI 141

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DVV YS +I GL  D  +D+A+DL+ +M    + P+VIT+ TLI GF    + 
Sbjct: 142 EDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQL 201

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   LL++M  KN+ P+    + ++D L K
Sbjct: 202 MEAFGLLNEMILKNINPNIYTYNTLIDTLCK 232



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 35/193 (18%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P ++    +   L ++        L  +M+  G+  D  T +I I+  C  G +  S  +
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +  L  + +    + L+ GLC  G ++ +L  FH               ++  G   
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLH-FHD-------------KVVAQGF-- 111

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
             QMD+                 +++G L++G  +I E    I+LL  +++++  PD  +
Sbjct: 112 --QMDQ-----------------VSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVM 152

Query: 209 VSIVVDLLAKNEI 221
            S ++D L K+++
Sbjct: 153 YSTIIDGLCKDKL 165


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 6/200 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CKNK ++ ALNL+ EM  K + P +V +++L  GL +  ++   + L DEM+  
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR---ILKCELDIQAYSCLIDGLCKSGRL 117
           G+ A+  TY   IDGLCKNG++  ++ LF  ++   I  C      ++ L+DGLCK GRL
Sbjct: 404 GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSF---TFTILLDGLCKGGRL 460

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A E F  L       DV  Y++MI+G    G +++A  +   MEEN   PN +TF  +
Sbjct: 461 KDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDII 520

Query: 178 IHGFIRINEPSKVIELLHKM 197
           I+   + +E  K  +LL +M
Sbjct: 521 INALFKKDENDKAEKLLRQM 540



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +++ A N+ + ML   +KPDV+ ++TL  G F ++++++A  +F+ M   
Sbjct: 274 ILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +YTI I+G CKN  + E++ LF+ +        I  YS LIDGLCKSGR+   
Sbjct: 334 GVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYV 393

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    + A+V+TY+ +I GL  +G +D+A  LF  M++  + P   TF  L+ G
Sbjct: 394 WDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDG 453

Query: 181 FIR-----------------------------INEPSK------VIELLHKMKEKNVMPD 205
             +                             IN   K       + +L KM+E   +P+
Sbjct: 454 LCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPN 513

Query: 206 ASIVSIVVDLLAKNE 220
           A    I+++ L K +
Sbjct: 514 AVTFDIIINALFKKD 528



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM +KGI  DVV + TL  G     +++ A  L +EM    
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKT 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVE-----------------------------------SV 86
           +  +  TY I +D LCK G + E                                   + 
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQ 324

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  + ++    D+ +Y+ LI+G CK+  ++ AL LF  + +  +V  +VTYS +I GL
Sbjct: 325 HVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++    DL  +M +  +  NVIT+ +LI G  +     + I L +KMK++ + P +
Sbjct: 385 CKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCS 444

Query: 207 SIVSIVVDLLAK 218
              +I++D L K
Sbjct: 445 FTFTILLDGLCK 456



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +  GA+ L  ++  +  KP+V ++NT+   L +   V  A+ LF EM   G
Sbjct: 170 LINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++AD  TYT  I G C    + E++ L   + +     ++  Y+ L+D LCK G+++ A 
Sbjct: 230 ISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV+TYS ++ G +   ++ KA  +F  M    V P+V ++  LI+GF
Sbjct: 290 NVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGF 349

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L  +M +KN++P     S ++D L K+
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 1/234 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   ++  AL+ + ++L++GIK D V + TL  G+ +I     A KL  ++    
Sbjct: 135 LIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRL 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK   + E+  LF  +       D+  Y+ LI G C + +L+ A+
Sbjct: 195 TKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAI 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I++  L  +G++ +A ++   M +  V P+VIT+ TL+ G+
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGY 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
             + E  K   + + M    V PD    +I+++   KN++   +L  F  +H++
Sbjct: 315 FLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQK 368



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ + K K    A++L   +  KGI+PD++  N L      + Q+   F +  ++ + G
Sbjct: 65  ILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T T+T  I GLC  G + +++     L     + D  +Y  LI+G+CK G    A+
Sbjct: 125 YQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAI 184

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +   +   +V  Y+ +I  L     + +A+ LF +M    ++ +V+T+ TLI+GF
Sbjct: 185 KLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGF 244

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++  + I LL++M  K + P+    +I+VD L K
Sbjct: 245 CIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
            I  V+ A   F+ M           +   +D   K  +   +V L   L +   + D+ 
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLI 95

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             + LI+  C  G++     +   + +       +T++ +I GL   GQ++KA      +
Sbjct: 96  TLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKL 155

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               +  + +++GTLI+G  +I +    I+L+ K+  +   P+  + + ++D L K ++
Sbjct: 156 LAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQL 214


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 119/204 (58%), Gaps = 2/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK K ++ A+NL  EML K + P+ V +N+L  GL +  ++  A  L  E+   
Sbjct: 417 IMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHR 476

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TYT  +DGLCKN  + +++ LF  ++    + +   Y+ LIDGLCK  RL+ A
Sbjct: 477 GQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNA 536

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +LF H L +G  + DV TY++MI GL  +G +D+A  +   ME+N   P+ +TF  +I 
Sbjct: 537 QKLFQHILVKGCCI-DVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIR 595

Query: 180 GFIRINEPSKVIELLHKMKEKNVM 203
                +E  K  +LLH+M  K ++
Sbjct: 596 SLFEKDENDKAEKLLHEMIAKGLL 619



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A + Y+EM S+GI PDV+ ++TL  G     Q+  AF L +EM    
Sbjct: 278 IIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN 337

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYTI ID LCK G + E+  L   +     + ++  YS L+DG C  G +  A 
Sbjct: 338 INPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAK 397

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH++ +  +   V +Y+IMI+GL     +D+A +L  +M    V PN +T+ +LI G 
Sbjct: 398 QIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGL 457

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +    +  ++L+ ++  +    D    + ++D L KN+
Sbjct: 458 CKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQ 496



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK  +++ A NL   M  +G+KP+VV ++TL  G   + +V  A ++F  M + 
Sbjct: 347 ILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQT 406

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     +Y I I+GLCK   + E++ L R +       +   Y+ LIDGLCKSGR+  A
Sbjct: 407 EVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSA 466

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   L      ADV+TY+ ++ GL  +  +DKA  LF+ M+E  + PN  T+  LI G
Sbjct: 467 LDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDG 526

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +        +L   +  K    D    ++++  L K
Sbjct: 527 LCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCK 564



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 1/239 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  E   A+ L   +  +  +PDVV++NT+  GL +   V  A+  + EM   G
Sbjct: 243 LLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I G C  G ++ +  L   + +     D+  Y+ LID LCK G+L+ A 
Sbjct: 303 IFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAK 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  +VVTYS ++ G    G++  A  +F  M +  V P+V ++  +I+G 
Sbjct: 363 NLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGL 422

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHERQEEVD 239
            +     + + LL +M  KNV+P+    + ++D L K+    ++L     +H R +  D
Sbjct: 423 CKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPAD 481



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 113/219 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   E++ +L+ + +++++G + + V + TL  GL +I +   A KL   ++   
Sbjct: 208 LMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRS 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   IDGLCK+  + E+ + +  +       D+  YS LI G C +G+L  A 
Sbjct: 268 TRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAF 327

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  DV TY+I+I  L  +G++ +A +L   M +  V PNV+T+ TL+ G+
Sbjct: 328 SLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGY 387

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + E     ++ H M +  V P     +I+++ L K +
Sbjct: 388 CLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGK 426



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 108/211 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K    A++L  +M  KGI+PD+V  + L      + Q+  +F +  ++ + G   +T 
Sbjct: 144 KMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTI 203

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
             T  + GLC  G + +S+     +     +++  +Y  L++GLCK G    A++L   +
Sbjct: 204 ILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMI 263

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DVV Y+ +I GL  D  +++A+D + +M    + P+VIT+ TLI GF    + 
Sbjct: 264 EDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQL 323

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                LL++M  KN+ PD    +I++D L K
Sbjct: 324 MGAFSLLNEMTLKNINPDVYTYTILIDALCK 354



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 72/149 (48%)

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           +  L K  +   ++ L + + +   E D+   S LI+  C  G++  +  +   + +   
Sbjct: 139 LGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGY 198

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             + +  + ++ GL   G++ K+      +       N +++GTL++G  +I E    I+
Sbjct: 199 QPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIK 258

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           LL  +++++  PD  + + ++D L K+++
Sbjct: 259 LLRMIEDRSTRPDVVMYNTIIDGLCKDKL 287


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 125/221 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YCK K ++  + L+ E+ SKG+  D V +NTL  G  +  ++  A +LF EM   
Sbjct: 389 ILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSR 448

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY I +DGLC NG + +++E+F  ++  +  L I  Y+ +I G+C + +++ A
Sbjct: 449 GVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDA 508

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF SL    +  DV+TY++MI GL   G + +A  LF  M+E+  AP+  T+  LI  
Sbjct: 509 WSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRA 568

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +  +     +EL+ +MK +    DAS + +VV +L+   +
Sbjct: 569 HLGGSGVISSVELIEEMKMRGFAADASTIKMVVVMLSDGRL 609



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +  A  +   M+SKG +P++V ++ L     +  +V+   +LF E+   G
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ADT TY   + G C++G +  + ELF+ +        +  Y  L+DGLC +G L+ AL
Sbjct: 415 LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKAL 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  ++  +  Y+I+IHG+ N  ++D A  LF  +    V P+V+T+  +I G 
Sbjct: 475 EIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGL 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    S+   L  KMKE    P     +I++
Sbjct: 535 CKKGSLSEADMLFRKMKEDGCAPSDCTYNILI 566



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C    +  A+ L   M+    +P+VV  NTL  GL    +V  A  L D M + G
Sbjct: 145 LINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYG 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  TY   ++ +CK+G    +++LFR +     +  +  YS +ID LCK G L+ AL
Sbjct: 205 CEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDAL 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    + ADVV YS +I GL NDG+ D    +  +M    + PNV+TF  LI  F
Sbjct: 265 SLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVF 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +  +  EL ++M  + + PD    S ++D   K
Sbjct: 325 VKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCK 361



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 114/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C +   +    +  EM+ + I P+VV  + L     +  ++  A +L++EM   G
Sbjct: 285 IIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT TY+  IDG CK   + E+ ++   +    CE +I  YS LI+  CK+ R++  +
Sbjct: 345 IAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGM 404

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    LVAD VTY+ ++ G    G+++ A +LF +M    V P+V+T+G L+ G 
Sbjct: 405 RLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGL 464

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               E  K +E+  KM++  ++    I +I++
Sbjct: 465 CDNGELQKALEIFEKMQKSRMILGIGIYNIII 496



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+ +++  A ++    L  G +P+ +  +TL  G     +V  A  L D M   
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T    I+GLC  G + E++ L   +    CE +   Y  +++ +CKSG   +A
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  +    + A VV YSI+I  L  DG +D A  LF +ME   +  +V+ + ++I G
Sbjct: 229 LDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGG 288

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                      ++L +M  +N++P+    S ++D+  K
Sbjct: 289 LCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVK 326



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  AL L   M+  G + + + +  +   + +      A  LF +M+   
Sbjct: 180 LINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERS 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A    Y+I ID LCK+G + +++ LF  + +   + D+ AYS +I GLC  GR +   
Sbjct: 240 IKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGA 299

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    ++ +VVT+S +I     +G++ +A +L+ +M    +AP+ IT+ +LI GF
Sbjct: 300 KMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGF 359

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            + N   +  ++L  M  K   P+    SI+++   K +   N +  F
Sbjct: 360 CKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLF 407



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  ++  A  LY+EM+++GI PD + +++L  G  + +++  A ++ D M   G
Sbjct: 320 LIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKG 379

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+I I+  CK   +   + LF  +       D   Y+ L+ G C+SG+L +A 
Sbjct: 380 CEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAK 439

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    +   VVTY I++ GL ++G++ KA ++F  M+++ +   +  +  +IHG 
Sbjct: 440 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGM 499

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++      L   +  K V PD    ++++  L K
Sbjct: 500 CNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCK 536



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 96/209 (45%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A++L+  M+     P ++  + LF  +    + +       EM  +G+  +  T  
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   ++ +  +         E +   +S LI+G C  GR+  A+ L   +   
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               +VVT + +I+GL   G++ +A  L   M +     N IT+G +++   +    +  
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++L  KM+E+++       SIV+D L K+
Sbjct: 229 LDLFRKMEERSIKASVVQYSIVIDSLCKD 257


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 5/244 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK + I+ A +L+ EML KG+ P VV +NT+  GLF+I +   A +L+  M  + 
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNR 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYTI ++GLC+N ++ E+ ++F++L     +LDI   + +I  L K GR E A+
Sbjct: 583 RKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAM 642

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++    LV DV TY ++   L  +G +++  +LF  MEEN  APN      L+   
Sbjct: 643 DLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWL 702

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP---SFTVHERQE 236
           +   +  +    L K+ EKN   +AS  S+++ + ++ E      SLP    F     Q 
Sbjct: 703 LHRGDIGRAGVYLSKLDEKNFSLEASTTSMLISIYSRAEYQQLAKSLPEKYRFPQRSLQL 762

Query: 237 EVDE 240
            VD+
Sbjct: 763 SVDK 766



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A+  +++M+++G+ PD+ + ++L  GL  + + E+A KLF E+   G
Sbjct: 383 LIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   + I +  LC+ G ++E+  L   +  +    D+ +Y+ L+DG C +GR++ A 
Sbjct: 443 IRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ ++HG     ++D A+ LF +M    + P V+T+ T++HG 
Sbjct: 503 KLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGL 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I    +  EL   M       D    +I+++ L +N
Sbjct: 563 FQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRN 600



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI---KPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           IL+ G C  K  E AL L   M   G     P+VV + T+  GL +   V+RA  +F  M
Sbjct: 169 ILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHM 228

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              GV  +  TYT  I G    G   E V++ + +     + D   Y+ L+D LCK+GR 
Sbjct: 229 IDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRC 288

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGT 176
             A  +F SL R  +   V  Y I++HG   +G + + H  FLD M  N V+P+   F  
Sbjct: 289 TEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHS-FLDLMVRNGVSPDHHIFNI 347

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + + +     + + +  KM+++ + P       ++D L K
Sbjct: 348 MFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCK 389



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E A  L+ E+L +GI+ +    N L   L    +V  A +L D M R  
Sbjct: 418 LVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVD 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y   +DG C  G I E+ +L   +  +  + D   Y+ L+ G CK+ R++ A 
Sbjct: 478 VRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAY 537

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L   VVTY+ ++HGL+  G+  +A +L+L+M  N    ++ T+  +++G 
Sbjct: 538 SLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGL 597

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R N   +  ++   +  K++  D   ++I++  L K
Sbjct: 598 CRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLK 634



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 112/216 (51%), Gaps = 10/216 (4%)

Query: 13  EGALNLYSEML---SKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEMQRDGVAAD-TR 67
           E  ++L++ M+   S  + P    + T+ IG F  + +++  F  F  + + G + + T 
Sbjct: 71  ELVVSLFNRMIRECSVKVAPSSCTY-TILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTV 129

Query: 68  TYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            +   + GLC    + E+ + L R +    C L++ +Y+ L+ GLC   R E ALEL H 
Sbjct: 130 IFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHM 189

Query: 127 LPR---GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +     G    +VVTY+ +I GL     +D+A  +F  M +  V PN  T+  LIHG++ 
Sbjct: 190 MADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLS 249

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +V+++L +M    + PD  I ++++D L KN
Sbjct: 250 TGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKN 285



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CKN     A N++  ++ KGIKP V I+  L  G      +       D M R+
Sbjct: 277 VLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRN 336

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D   + I  +   K   I E++ +F  +R       +  Y  LID LCK GR++ A
Sbjct: 337 GVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDA 396

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F+ +    +  D+  +S +++GL    + +KA  LF ++ +  +  N   F  L+  
Sbjct: 397 VLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCN 456

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R     +   L+  M   +V PD    + +VD
Sbjct: 457 LCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVD 490



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 37/252 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C+   +  A  L   ML   ++PDV+ +NTL  G     +++ A KL D M   
Sbjct: 452 ILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSI 511

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK----------------------CE 98
           G+  D  TY   + G CK   I ++  LFR + ++K                      CE
Sbjct: 512 GLKPDEFTYNTLLHGYCKARRIDDAYSLFREM-LMKGLTPGVVTYNTILHGLFQIGRFCE 570

Query: 99  --------------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
                          DI  Y+ +++GLC++  ++ A ++F SL    L  D+ T +IMI 
Sbjct: 571 AKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIG 630

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L   G+ + A DLF  +    + P+V T+  +    I+     ++ EL   M+E    P
Sbjct: 631 ALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAP 690

Query: 205 DASIVSIVVDLL 216
           ++ +++ +V  L
Sbjct: 691 NSRMLNALVRWL 702



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 95/212 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  ++  M+ KG++P+   +  L  G     + +   ++  EM   G
Sbjct: 208 VIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHG 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + +D LCKNG   E+  +F +L     +  +  Y  L+ G    G L    
Sbjct: 268 LQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMH 327

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + R  +  D   ++IM +       +D+A  +F  M +  ++P V+ +G LI   
Sbjct: 328 SFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDAL 387

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++      +   ++M  + V PD  + S +V
Sbjct: 388 CKLGRVDDAVLKFNQMINEGVTPDIFVFSSLV 419



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 100/204 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ N Y K   I+ A++++ +M  + + P VV +  L   L ++ +V+ A   F++M  +
Sbjct: 347 IMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINE 406

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   ++  + GLC      ++ +LF  +      L+   ++ L+  LC+ GR+  A
Sbjct: 407 GVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEA 466

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +  DV++Y+ ++ G    G++D+A  L   M    + P+  T+ TL+HG
Sbjct: 467 QRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHG 526

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           + +         L  +M  K + P
Sbjct: 527 YCKARRIDDAYSLFREMLMKGLTP 550


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   I+ A +L+ +MLS GI P VV +NT+  GLF+  +   A +L+  M   G
Sbjct: 211 LLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 270

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   ++GLCK+  + E+ ++F++L     +L+I  ++ +I  L K GR E A+
Sbjct: 271 TKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 330

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++P   LV DVVTY ++   L  +G +++   LF  ME+N  APN      L+   
Sbjct: 331 DLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 390

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
           +   + S+    L K+ E+N   +AS  S+++ + + +E      SLP
Sbjct: 391 LHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLP 438



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 106/196 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A   +++M+++G+ P++V+ ++L  GL  I + E+  +LF EM   G
Sbjct: 71  LIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVG 130

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   +  LCK G ++E   L  ++  +    D+ +Y+ LIDG C +G ++ A 
Sbjct: 131 IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEAS 190

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +  +Y+ ++HG    G++D A+ LF  M  N + P V+T+ T++HG 
Sbjct: 191 KLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGL 250

Query: 182 IRINEPSKVIELLHKM 197
            +    S+  EL   M
Sbjct: 251 FQTKRFSEAKELYLNM 266



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E    L+ EML+ GI P++V  NT+   L +  +V    +L D ++  G
Sbjct: 106 LVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG 165

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y   IDG C  G I E+ +L   +  +  + +  +Y+ L+ G CK+GR++ A 
Sbjct: 166 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +   VVTY+ ++HGL+   +  +A +L+L+M  +     + T+ T+++G 
Sbjct: 226 SLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGL 285

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   +  ++   +  K +  +    +I++  L K
Sbjct: 286 CKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 322



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I  + Y K   I+ A++++++M   G+ PD V +  L   L ++ +V+ A   F++M  +
Sbjct: 35  IFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINE 94

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   ++  + GLC      +  ELF  +  +    +I  ++ ++  LCK GR+   
Sbjct: 95  GVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEG 154

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  S+    +  DV++Y+ +I G    G +D+A  L   M    + PN  ++ TL+HG
Sbjct: 155 QRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHG 214

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           + +         L  KM    + P
Sbjct: 215 YCKAGRIDSAYSLFRKMLSNGITP 238



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 99/194 (51%), Gaps = 3/194 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY     +    +L + M++ GI P+  I N  F    +   +++A  +F++M++ G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  +Y   ID LCK G + ++   F  +       +I  +S L+ GLC   + E   
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    +  ++V ++ ++  L  +G++ +   L   +E   V P+VI++ TLI G 
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 182 I---RINEPSKVIE 192
                I+E SK++E
Sbjct: 181 CLAGTIDEASKLLE 194



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L + M  +G++ +   + IF     K G I +++++F  +R      D  +Y  LID LC
Sbjct: 17  LLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALC 76

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K GR++ A   F+ +    +  ++V +S +++GL +  + +K  +LF +M    + PN++
Sbjct: 77  KLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIV 136

Query: 173 TFGTLIHGFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            F T++       R+ E  ++++ +  M    V PD    + ++D
Sbjct: 137 FFNTILCNLCKEGRVMEGQRLVDSIECM---GVRPDVISYNTLID 178



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%)

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           M+HG  N G + + HDL   M  N ++PN   F      + +     K +++ +KM++  
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 202 VMPDASIVSIVVDLLAK 218
           + PDA     ++D L K
Sbjct: 61  LSPDAVSYGALIDALCK 77


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 7/243 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC    I+ A  L+ EML KG+ P VV +NT+  GLF+  +   A +L+  M   G
Sbjct: 490 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 549

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ++GLCK+  + E+ ++F++L     +L+I  ++ +I  L K GR E A+
Sbjct: 550 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 609

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++P   LV +VVTY ++   L  +G +++   LF  ME+N  APN      L+   
Sbjct: 610 DLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 669

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLPSFTVHERQEEVD 239
           +   + S+    L K+ E+N   +AS  S+++ +   +E      SLP     E+   ++
Sbjct: 670 LHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSLP-----EKYHFLN 724

Query: 240 ESN 242
           E+N
Sbjct: 725 EAN 727



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 1/244 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC     + A  ++  M+S G+ P  V +NTL  G     +++ A+ LF EM R G
Sbjct: 455 LISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 514

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY   + GL +     E+ EL+  +     + DI  Y+ +++GLCKS  ++ A 
Sbjct: 515 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAF 574

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F SL    L  +++T++IMI  L   G+ + A DLF  +  N + PNV+T+  +    
Sbjct: 575 KMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENL 634

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      +   L   M++    P++ ++ ++V  LL + +IS        + ER   V+ 
Sbjct: 635 IEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEA 694

Query: 241 SNVK 244
           S   
Sbjct: 695 STTS 698



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A   +++M+++G+ P++V+ N+L  GL  + + ERA +L  EM   G
Sbjct: 350 LIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG 409

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   I  LC  G ++E   L   +  +    D  +Y+ LI G C +GR + A 
Sbjct: 410 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAE 469

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    L    VTY+ ++HG  +  ++D A+ LF +M    V P V+T+ T++HG 
Sbjct: 470 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 529

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S+  EL   M       D    +I+++ L K+
Sbjct: 530 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKS 567



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + P+   ++ L   L  + +++ +F  F  + + G   +       + GLC    + E++
Sbjct: 94  VAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAM 153

Query: 87  E-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG---VLVADVVTYSIM 142
           + L + +  L C  D  +YS L+ G C   R E ALEL   +          +VVTY+ +
Sbjct: 154 DVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTV 213

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I GL      D+A  +F  M +N V PN  T+  LIHG++ I +  +V+++L KM  + +
Sbjct: 214 IDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGL 273

Query: 203 MPDASIVSIVVDLLAKNEISLNSLPSF 229
            PD      +++ L     +L+ + SF
Sbjct: 274 KPDCYTYGSLLNYLC----ALSEMHSF 296



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 35/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS---KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           IL+ G+C     E AL L   M +   +   P+VV + T+  GL +    +RA  +F +M
Sbjct: 174 ILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQM 233

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC----- 112
             +GV  +  TY   I G    G   E V++   +     + D   Y  L++ LC     
Sbjct: 234 IDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEM 293

Query: 113 ---------------------------KSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                      K G ++ A+++F+ + +  L  +VV Y  +I  
Sbjct: 294 HSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDA 353

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++D A   F  M    V PN++ F +L++G   +++  +  EL+++M ++ + P+
Sbjct: 354 LCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPN 413

Query: 206 ASIVSIVV 213
           A   + ++
Sbjct: 414 AVFFNTLI 421



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF---IGLFEIHQVERAFKLFDEMQ 58
           LI+GY    + +  + +  +M ++G+KPD   + +L      L E+H         D M 
Sbjct: 248 LIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHS------FLDLMV 301

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
            +G++ D   + IF     K G I +++++F  +R      ++  Y  LID LCK GR++
Sbjct: 302 ENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVD 361

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A   F+ +    +  ++V ++ +++GL    + ++A +L  +M +  + PN + F TLI
Sbjct: 362 DAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLI 421

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDA 206
                +    +   L+  M+   V PDA
Sbjct: 422 CNLCNVGRVMEGRRLIDLMEHVGVRPDA 449



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 39/263 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E A  L  EML +GI P+ V  NTL   L  + +V    +L D M+  G
Sbjct: 385 LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +YT  I G C  G   E+ ++F  +  +        Y+ L+ G C + R++ A 
Sbjct: 445 VRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 504

Query: 122 ELFHSLPR-----GVLV------------------------------ADVVTYSIMIHGL 146
            LF  + R     GV+                                D+ TY+I+++GL
Sbjct: 505 CLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGL 564

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                +D+A  +F  +    +  N+ITF  +I   ++       ++L   +    ++P+ 
Sbjct: 565 CKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNV 624

Query: 207 SIVSIVVDLLAKNEISLNSLPSF 229
               +   L+A+N I   SL  F
Sbjct: 625 ----VTYRLVAENLIEEGSLEEF 643



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           ILI   C+   ++ +   +  +L  G + + ++ N L  GL +  +V  A   L   M  
Sbjct: 103 ILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPE 162

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   DT +Y+I + G C      E++EL R +       C  ++  Y+ +IDGLCK+  
Sbjct: 163 LGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQL 222

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            + A  +F  +    +  +  TY+ +IHG  + G+  +   +   M    + P+  T+G+
Sbjct: 223 FDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGS 282

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L++    ++E    ++L   M E  + PD  I +I     AK
Sbjct: 283 LLNYLCALSEMHSFLDL---MVENGLSPDHHIFNIFFSAYAK 321



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C  K +  A++ L   M   G  PD V ++ L  G    ++ E A +L   M  D
Sbjct: 139 LLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMAND 198

Query: 61  ---GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
                  +  TYT  IDGLCK      +  +F+ +     + +   Y+CLI G    G+ 
Sbjct: 199 HGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKW 258

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           +  +++   +    L  D  TY  +++ L    +M    DL   M EN ++P+   F   
Sbjct: 259 KEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDL---MVENGLSPDHHIFNIF 315

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + +     K +++ +KM++  + P+      ++D L K
Sbjct: 316 FSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCK 356



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 67/158 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK+  ++ A  ++  + SKG++ +++    +   L +  + E A  LF  +  +
Sbjct: 559 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN 618

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY +  + L + G + E   LF  +       + Q  + L+  L   G +  A
Sbjct: 619 GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 678

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
                 L       +  T S++I    +D     A  L
Sbjct: 679 GAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSL 716


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 7/243 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC    I+ A  L+ EML KG+ P VV +NT+  GLF+  +   A +L+  M   G
Sbjct: 555 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ++GLCK+  + E+ ++F++L     +L+I  ++ +I  L K GR E A+
Sbjct: 615 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++P   LV +VVTY ++   L  +G +++   LF  ME+N  APN      L+   
Sbjct: 675 DLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLPSFTVHERQEEVD 239
           +   + S+    L K+ E+N   +AS  S+++ +   +E      SLP     E+   ++
Sbjct: 735 LHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLP-----EKYHFLN 789

Query: 240 ESN 242
           E+N
Sbjct: 790 EAN 792



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC     + A  ++  M+S G+ P  V +NTL  G     +++ A+ LF EM R G
Sbjct: 520 LISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY   + GL +     E+ EL+  +     + DI  Y+ +++GLCKS  ++ A 
Sbjct: 580 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAF 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F SL    L  +++T++IMI  L   G+ + A DLF  +  N + PNV+T+  +    
Sbjct: 640 KMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENL 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      +   L   M++    P++ ++ ++V  LL + +IS        + ER   V+ 
Sbjct: 700 IEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEA 759

Query: 241 SNV 243
           S  
Sbjct: 760 STT 762



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+    +++   NL+ EM+ +GI PDVV + T+  GL +    +RA  +F +M  +
Sbjct: 204 IVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I G    G   E V++   +     + D   Y  L++ LCK+GR   A
Sbjct: 264 GFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREA 323

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F S+ R  +   V TY I+IHG    G + + H     M EN ++P+   F      
Sbjct: 324 RFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSA 383

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     K +++ +KM++  + P+      ++D L K
Sbjct: 384 YAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCK 421



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A   +++M+++G+ P++V+ N+L  GL  + + ERA +L  EM   G
Sbjct: 415 LIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG 474

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   I  LC  G ++E   L   +  +    D  +Y+ LI G C +GR + A 
Sbjct: 475 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAE 534

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    L    VTY+ ++HG  +  ++D A+ LF +M    V P V+T+ T++HG 
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S+  EL   M       D    +I+++ L K+
Sbjct: 595 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKS 632



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           ILI  +C+   +E     +  +L  G + D +  N L  GL    +V  A   L   M  
Sbjct: 95  ILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPE 154

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   DT +YTI + GLC      E++EL   +      +C  ++ +YS +I+G    G+
Sbjct: 155 LGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQ 214

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++    LF  +    +  DVVTY+ +I GL      D+A  +F  M +N   PN  T+  
Sbjct: 215 VDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNC 274

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LIHG++ I +  +V+++L +M  + + PD      +++ L KN
Sbjct: 275 LIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKN 317



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 96/205 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  CKN     A   +  M+ KGIKP V  +  L  G      +       D M  +G
Sbjct: 310 LLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   + IF     K G I +++++F  +R      ++  Y  LID LCK GR++ A 
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    +  ++V ++ +++GL    + ++A +L  +M +  + PN + F TLI   
Sbjct: 430 VKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 489

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
             +    +   L+  M+   V PDA
Sbjct: 490 CNVGRVMEGRRLIDLMEHVGVRPDA 514



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 110/247 (44%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK +  + A  ++ +M+  G KP+   +N L  G   I + +   ++ +EM   G
Sbjct: 240 VIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC--------- 112
           +  D  TY   ++ LCKNG   E+   F ++     +  +  Y  LI G           
Sbjct: 300 LKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMH 359

Query: 113 --------------------------KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                     K G ++ A+++F+ + +  L  +VV Y  +I  L
Sbjct: 360 SFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 419

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A   F  M    V PN++ F +L++G   +++  +  EL+++M ++ + P+A
Sbjct: 420 CKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNA 479

Query: 207 SIVSIVV 213
              + ++
Sbjct: 480 VFFNTLI 486



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 39/263 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E A  L  EML +GI P+ V  NTL   L  + +V    +L D M+  G
Sbjct: 450 LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +YT  I G C  G   E+ ++F  +  +        Y+ L+ G C + R++ A 
Sbjct: 510 VRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 569

Query: 122 ELFHSLPR-----GVLV------------------------------ADVVTYSIMIHGL 146
            LF  + R     GV+                                D+ TY+I+++GL
Sbjct: 570 CLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGL 629

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                +D+A  +F  +    +  N+ITF  +I   ++       ++L   +    ++P+ 
Sbjct: 630 CKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNV 689

Query: 207 SIVSIVVDLLAKNEISLNSLPSF 229
               +   L+A+N I   SL  F
Sbjct: 690 ----VTYRLVAENLIEEGSLEEF 708



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 10/220 (4%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH---QVERAFKLFDEMQR---DGVAAD 65
           ++ AL L+ E+L       V   N L   +         E A   F+ M R   D VA +
Sbjct: 30  LDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPN 89

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE-LF 124
             TY+I I   C+ G++      F  +      +D  A + L+ GLC   R+  A++ L 
Sbjct: 90  LCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLL 149

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN---AVAPNVITFGTLIHGF 181
             +P    + D V+Y+I++ GL N+ + ++A +L   M ++      PNV+++  +I+GF
Sbjct: 150 QRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGF 209

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               +  K   L  +M ++ + PD    + V+D L K ++
Sbjct: 210 FTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQL 249



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 35/239 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY     +    +    M+  G+ PD  I N  F    +   +++A  +F++M++ 
Sbjct: 344 ILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +   Y   ID LCK G + ++   F  +       +I  ++ L+ GLC   + E A
Sbjct: 404 GLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERA 463

Query: 121 LELFHSL------PRGVLV-----------------------------ADVVTYSIMIHG 145
            EL + +      P  V                                D  +Y+ +I G
Sbjct: 464 EELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISG 523

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
               G+ D+A  +F  M    ++P  +T+ TL+HG+   +       L  +M  K V P
Sbjct: 524 YCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTP 582



 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 67/158 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK+  ++ A  ++  + SKG++ +++    +   L +  + E A  LF  +  +
Sbjct: 624 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN 683

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY +  + L + G + E   LF  +       + Q  + L+  L   G +  A
Sbjct: 684 GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 743

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
                 L       +  T S+++    +D     A  L
Sbjct: 744 GAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSL 781


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 127/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A +LYSEM+SKGI P+VV ++ L  G F + Q++ A  LF++M  + 
Sbjct: 203 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILEN 262

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +DG CK+G + E   +F  +     + ++  Y  L+DG C    +  A 
Sbjct: 263 IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAK 322

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +++ +  +  D+ +Y+I+I G     ++D+A +LF +M    + P+V+T+ +LI G 
Sbjct: 323 SILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGL 382

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++ + S  ++L+ +M ++ V PD    S ++D L KN 
Sbjct: 383 CKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 421



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 111/193 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK K+++ A+NL+ EM  K I PDVV +N+L  GL ++ ++  A KL DEM   
Sbjct: 342 ILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 401

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY+  +D LCKN  + +++ L   L+      ++  Y+ LIDGLCK GRLE A
Sbjct: 402 GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 461

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L        V TY++MIHG  N G  D+A  L   M++N+  P+ +T+  +I  
Sbjct: 462 HNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRS 521

Query: 181 FIRINEPSKVIEL 193
               +E  K  +L
Sbjct: 522 LFDKDENDKAEKL 534



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC  KE+  A ++   M  +G+ PD+  +N L  G  +I +V+ A  LF EM    
Sbjct: 308 LMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKH 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   IDGLCK G I  +++L   +       DI  YS ++D LCK+ +++ A+
Sbjct: 368 IIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  ++ TY+I+I GL   G+++ AH++F D+        V T+  +IHGF
Sbjct: 428 ALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGF 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNE 220
                  + + LL KMK+ + +PDA    I++  L  K+E
Sbjct: 488 CNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDE 527



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E   AL+L   +    ++P+VV+++T+  G+ +   V  AF L+ EM   G
Sbjct: 168 LIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+  I G    G + ++++LF  + +   + D+  ++ L+DG CK G+++   
Sbjct: 228 ISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGK 287

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  +VVTY  ++ G     +++KA  +   M +  V P++ ++  LI GF
Sbjct: 288 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGF 347

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I +  + + L  +M  K+++PD    + ++D L K
Sbjct: 348 CKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCK 384



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL  +  +++ G + D V + TL  GL ++ +   A  L   +  + 
Sbjct: 133 LIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNL 192

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y+  IDG+CK+ ++ ++ +L+  +       ++  YS LI G    G+L+ A+
Sbjct: 193 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAI 252

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  DV T++I++ G   DG+M +   +F  M +  + PNV+T+ +L+ G+
Sbjct: 253 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 312

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E +K   +L+ M ++ V PD    +I++D   K
Sbjct: 313 CLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCK 349



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 16/227 (7%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA---- 64
           N ++  A +L+S +L +   P  +  N +   L +         L  +M+ +G+      
Sbjct: 54  NNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFH 113

Query: 65  ------------DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
                       +T T+T  I GLC  G I +++     +  +  +LD   Y  LI GLC
Sbjct: 114 FQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLC 173

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K G    AL+L   +   ++  +VV YS +I G+  D  ++ A DL+ +M    ++PNV+
Sbjct: 174 KVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVV 233

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           T+  LI GF  + +    I+L +KM  +N+ PD    +I+VD   K+
Sbjct: 234 TYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD 280



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CKN +++ A+ L +++  +GI+P++  +  L  GL +  ++E A  +F+++   G
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT+ I G C  G   E++ L   ++   C  D   Y  +I  L      + A 
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAE 532

Query: 122 ELFHSLPRGVL 132
           +L   + RG+L
Sbjct: 533 KLREMITRGLL 543



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV----ITFGTLIHGFIRINEPSK 189
            + +T++ +I GL   GQ+ +A    L   +N VA       + +GTLIHG  ++ E   
Sbjct: 125 PNTITFTTLIKGLCLKGQIHQA----LLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRA 180

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++LL ++    V P+  + S ++D + K++
Sbjct: 181 ALDLLRRVDGNLVQPNVVMYSTIIDGMCKDK 211


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 126/215 (58%), Gaps = 3/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK K +E  + L+ EM  +G+  + V + T+  G F+    + A  +F +M  + 
Sbjct: 404 LINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR 463

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+I + GLC  G +  ++ +F+ L+  + EL+I  Y+ +I+G+CK+G++  A 
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  DVVTY+ MI GL +   + +A DLF  M+E+   PN  T+ TLI   
Sbjct: 524 DLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRAN 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+    + DAS +S+V ++L
Sbjct: 581 LRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC +K I  A+ L  +M+  G KPD     TL  GLF  ++   A  L D+M + G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G I  ++ L   +   + + ++  ++ +ID LCK   +E+A+
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAV 278

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  +VVTY+ +I+ L N G+   A  L  +M E  + PNV+TF  LI  F
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
            +  +  +  +L  +M ++++ PD    +I  +LL         +  F +H R +E  +
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPD----TITYNLL---------INGFCMHNRLDEAKQ 384



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 96/180 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  C       A  L S ML K I P+VV  N L    F+  ++  A KL +EM +  
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY + I+G C +  + E+ ++F+ +    C  +IQ Y+ LI+G CK  R+E  +
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + +  LV + VTY+ +I G +  G  D A  +F  M  N V  +++T+  L+HG 
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGL 478



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I IN +C+  ++  AL + ++M+  G +PD+V  ++L  G     ++  A  L D+M   
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  I GL  +    E+V L   +    C+ D+  Y  +++GLCK G +++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + +    + A+VV ++ +I  L     ++ A DLF +ME   + PNV+T+ +LI+ 
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M EK + P+    + ++D   K
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFK 340



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  +I+ ALNL ++M +  IK +VVI NT+   L +   VE A  LF EM+  G
Sbjct: 229 VVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I+ LC  G   ++  L   +   K   ++  ++ LID   K G+L  A 
Sbjct: 289 IRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  D +TY+++I+G     ++D+A  +F  M      PN+ T+ TLI+GF
Sbjct: 349 KLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGF 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +       +EL  +M ++ ++ +    + ++
Sbjct: 409 CKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 108/208 (51%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A++L+ +M+     P +V  N L   + ++++ E    L ++MQ  G++ D  TY+
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           IFI+  C+   +  ++ +   +  L  E DI   S L++G C S R+  A+ L   +   
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D  T++ +IHGL+   +  +A  L   M +    P+++T+GT+++G  +  +    
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + LL+KM+   +  +  I + ++D L K
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCK 270



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G   + +   A+ L  +M+ +G +PD+V + T+  GL +   ++ A  L ++M+   
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR 253

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+   +   ID LCK  ++  +V+LF  +       ++  Y+ LI+ LC  GR   A 
Sbjct: 254 IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS 313

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++    +  +VVT++ +I   + +G++ +A  L  +M + ++ P+ IT+  LI+GF
Sbjct: 314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              N   +  ++   M  K+ +P+    + +++   K
Sbjct: 374 CMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCK 410


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK + I  A+ +  EM++ G+  DVV  +TL  G  +  + E A +LF  M    
Sbjct: 294 LIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHH 353

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T  I +DGL K  +  E++ LFR +  +  EL+I  Y+ ++DG+C  G+   A 
Sbjct: 354 QLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDAR 413

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  LP   +  DVV Y+ MI GL  +G +D A DL + MEEN   PN  T+  L+ G 
Sbjct: 414 ELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGL 473

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  + S+  + L  MK K +  DA+   +++   + N+
Sbjct: 474 LQRYDISRSTKYLMLMKGKGLSADATTTELLISYFSANK 512



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 121/233 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK+  +  ALN +S M  KGI+PD+V +N+L  GL    +   A  L   M R G
Sbjct: 154 IMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKG 213

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + +T+ + +D  CK G I  +  +   +  +  E D+  Y+ +I G C   ++  A+
Sbjct: 214 IMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAV 273

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    L+ +VVTYS +IHG      ++KA  +  +M  N +  +V+T+ TLI GF
Sbjct: 274 KVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGF 333

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
            +   P   IEL   M E + +P+    +I++D L K +    ++  F   E+
Sbjct: 334 CKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEK 386



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C  K      ++   M   G++P VV   TL  GL     V  A +  D ++  
Sbjct: 47  IVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDM 106

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ-AYSCLIDGLCKSGRLEI 119
           G  +++ T+   I+GLCK G    ++     +       D+  AYS ++D LCK G L +
Sbjct: 107 GYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCL 166

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL  F  +    +  D+V Y+ +IHGL + G+ ++A  L  +M    + PNV TF  L+ 
Sbjct: 167 ALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVD 226

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            F +  + S+   ++  M    V PD    + V+ 
Sbjct: 227 NFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVIS 261



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 102/220 (46%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  A      +   G + +   H T+  GL ++     A    ++++   
Sbjct: 83  LINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRN 142

Query: 62  VAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              D    Y+  +D LCK+G +  ++  F  +     + D+ AY+ LI GLC  GR   A
Sbjct: 143 RGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEA 202

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++ R  ++ +V T+++++     +G++ +A  +   M    V P+V+T+ ++I G
Sbjct: 203 TTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISG 262

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +++ +  +++   M  K ++P+    S ++    K  
Sbjct: 263 HCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTR 302



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 7/230 (3%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K    A++L     S G+KPDV     +   L  +      F +   M + GV     
Sbjct: 19  KMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVV 78

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA---LELF 124
           T+   I+GLC  G +  +     +L  +  E +   +  +I+GLCK G    A   LE  
Sbjct: 79  TFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKI 138

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
               RG  +  ++ YS ++  L  DG +  A + F  M    + P+++ + +LIHG    
Sbjct: 139 EGRNRGFDL--LIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSF 196

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEIS-LNSLPSFTVH 232
              ++   LL  M  K +MP+    +++VD   K  +IS   ++  F VH
Sbjct: 197 GRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVH 246



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 2/237 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVI-HNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +ING CK  +  GA++   ++  +    D++I ++T+   L +   +  A   F  M   
Sbjct: 118 IINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCK 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I GLC  G   E+  L   +       ++Q ++ L+D  CK G++  A
Sbjct: 178 GIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRA 237

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  DVVTY+ +I G     QM+ A  +F  M    + PNV+T+ +LIHG
Sbjct: 238 KTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHG 297

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF-TVHERQE 236
           + +    +K I +L +M    +  D    S ++    K      ++  F T+HE  +
Sbjct: 298 WCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQ 354



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G  K +    A++L+ +M    ++ ++V +N +  G+    +   A +LF  +   
Sbjct: 363 IILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSK 422

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  I GLCK G + ++ +L   +    C  +   Y+ L+ GL +   +  +
Sbjct: 423 GIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRS 482

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
            +    +    L AD  T  ++I   ++  + + A  +FL
Sbjct: 483 TKYLMLMKGKGLSADATTTELLI-SYFSANKENSALQVFL 521


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 2/229 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ GYCK + ++ A +L+ EML KG+ P V  +NT+  GLF+  +   A +L+  M   
Sbjct: 516 ILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINS 575

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY I ++GLCKN ++ E+ ++FR L     +LD   ++ +I  L K GR E A
Sbjct: 576 RTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDA 635

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF ++    LV DVVTY ++   L  +G + +   LF  ME++  APN      L+  
Sbjct: 636 MDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRR 695

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
            +   + S+    L+K+ EKN   +AS  S+++ L ++ E      SLP
Sbjct: 696 LLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKSLP 744



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ +  ++E A NL+ EM+ +GI P+VV + T+  GL +   V+RA  +F +M   G
Sbjct: 167 VINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRG 226

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I G    G   E V++   +     E D   Y+ L+D LCK+GR   A 
Sbjct: 227 VKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREAR 286

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIHG 180
             F S+ R  +  DV  Y+I++HG    G + + H  FLD M  N V+PN   F  +   
Sbjct: 287 LFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHS-FLDLMVGNGVSPNRRIFNIMFCA 345

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     + + + +KM+++ + PD      ++D L K
Sbjct: 346 YAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCK 383



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A+  +++M+++G+ P++ + ++L  GL  + + E+A +LF E+   G
Sbjct: 377 LIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   +   +  LC  G ++E+  L   +  +    ++ +Y+ L+ G C +GR++ A 
Sbjct: 437 ICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAA 496

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +  TY+I++ G     ++D A+ LF +M    V P V T+ T++HG 
Sbjct: 497 KLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGL 556

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S+  EL   M       D    +I+++ L KN
Sbjct: 557 FQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKN 594



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CKN     A   +  M  KGIKPDV I+  L  G      +       D M  +
Sbjct: 271 LLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGN 330

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ + R + I      K   I E++ +F  +R      D+ ++  LID LCK GR++ A
Sbjct: 331 GVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDA 390

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F+ +    +  ++  +S +++GL   G+ +KA +LF ++ +  +  + + F TL+  
Sbjct: 391 VLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCN 450

Query: 181 FI---RINEPSKVIELL 194
                R+ E  ++I+L+
Sbjct: 451 LCNEGRVMEAQRLIDLM 467



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 35/240 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  ++ +M+ +G+KPD   +N L  G     + +   ++ +EM   G
Sbjct: 202 VIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
           +  D  TY + +D LCKNG   E+   F ++     + D+  Y+ L+ G    G L    
Sbjct: 262 LEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMH 321

Query: 118 -------------------------------EIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                          E A+ +F+ + +  L  DVV++  +I  L
Sbjct: 322 SFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDAL 381

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A   F  M    V PN+  F +L++G   + +  K  EL  ++ ++ +  DA
Sbjct: 382 CKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDA 441



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C    +  A  L   M+  G++P+V+ +NTL  G     +++ A KL D M  +G
Sbjct: 447 LMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNG 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYTI + G CK   + ++  LFR + +      +  Y+ ++ GL ++GR   A 
Sbjct: 507 LKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEAN 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+ ++       D+ TY+I+++GL  +  +D+A  +F  +       + +TF  +I   
Sbjct: 567 ELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGAL 626

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           ++       ++L   +    ++PD     +   L+A+N I   SL  F
Sbjct: 627 LKGGRKEDAMDLFATISAYGLVPDV----VTYRLIAENLIEEGSLGEF 670



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES---VELF-RTLRILKCELDIQ 102
           ++ A KLFDE+      A  R +   +  + + G    S   V LF R  R    ++   
Sbjct: 30  LDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPN 89

Query: 103 A--YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD-LF 159
           A  YS LI   C+ GRLE     F  + +     +V+  S ++ GL +  ++D+A D L 
Sbjct: 90  ACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILL 149

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L M E    P+V+ + T+I+GF R  +  K   L  +M ++ + P+    + V+D L K 
Sbjct: 150 LRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKA 209

Query: 220 EI 221
           ++
Sbjct: 210 QV 211


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 122/202 (60%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK K ++ AL+L+++M  KGI PD V +N+L  GL +  ++  A++L DEM  +G
Sbjct: 354 MINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNG 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  TY   ID LCKN ++ +++ L + ++    + D+  ++ LI GLCK GRL+ A 
Sbjct: 414 QPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQ 473

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L       +  TY+IM++GL  +G  D+A  L   M++N + P+ +T+ TLI   
Sbjct: 474 DVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQAL 533

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
              +E  K  +LL +M  ++V+
Sbjct: 534 FHKDENEKAEKLLREMIARDVV 555



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 112/215 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   ++  A ++ + +   G  P+   + T+  G  +I  V+ A  LF++MQ  G
Sbjct: 319 LMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKG 378

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY   IDGLCK+G I  + EL   +       +I  Y+CLID LCK+  ++ A+
Sbjct: 379 IAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAI 438

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  D+ T++I+I+GL   G++  A D+F D+     + N  T+  +++G 
Sbjct: 439 ALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGL 498

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +     +   LL KM +  ++PDA     ++  L
Sbjct: 499 CKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQAL 533



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK   ++GA N+   M+ +G+ P+VV +++L  G   ++QV +A  + + + + 
Sbjct: 283 ILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQM 342

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A +  +Y   I+G CK   + E++ LF  ++      D   Y+ LIDGLCKSGR+  A
Sbjct: 343 GAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYA 402

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +      A++ TY+ +I  L  +  +D+A  L   +++  + P++ TF  LI+G
Sbjct: 403 WELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYG 462

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++       ++   +  K    +A   +I+V+ L K
Sbjct: 463 LCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCK 500



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+K +  A  LYS+M++K I PDVV  + L  G   + Q+E AF LF EM    
Sbjct: 214 IIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKN 273

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +D LCK G +  +  +   +       ++  YS L+DG C   ++  A 
Sbjct: 274 INPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAK 333

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +++ +     +  +Y  MI+G      +D+A  LF DM+   +AP+ +T+ +LI G 
Sbjct: 334 HVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGL 393

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S   EL+ +M +     +    + ++D L KN
Sbjct: 394 CKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKN 431



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E   AL +  ++  K +K +VV++NT+   L +   V  A++L+ +M    
Sbjct: 179 LINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKK 238

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  T++  I G C  G + E+  LFR + +     D   ++ L+D LCK G L+ A 
Sbjct: 239 ISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAK 298

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  ++ +VVTYS ++ G     Q++KA  +   + +   APN  ++ T+I+GF
Sbjct: 299 NMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGF 358

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I    + + L + M+ K + PD    + ++D L K+
Sbjct: 359 CKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKS 396



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C N +++ AL+ +  +L+ G   D   + TL  GL +I +   A ++  ++    
Sbjct: 144 LIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKL 203

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   ID LCK+  ++++ EL+  +   K   D+  +S LI G C  G+LE A 
Sbjct: 204 VKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAF 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D  T++I++  L  +G +  A ++ + M +  V PNV+T+ +L+ G+
Sbjct: 264 GLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGY 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +N+ +K   +L+ + +    P+A     +++   K
Sbjct: 324 CLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCK 360



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 104/210 (49%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           N     A++L   +   GI PD+   N L      + ++  AF +  ++ + G   DT T
Sbjct: 81  NNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTIT 140

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           +   I GLC NG + E++     +  L   LD  +Y  LI+GLCK G    AL++   + 
Sbjct: 141 FNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKID 200

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
             ++  +VV Y+ +I  L     +  A++L+  M    ++P+V+TF  LI+GF  + +  
Sbjct: 201 GKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLE 260

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   L  +M  KN+ PD    +I+VD L K
Sbjct: 261 EAFGLFREMVLKNINPDYYTFNILVDALCK 290



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC   E+  A ++ +++L  G +PD +  NTL  GL    +V+ A    D +   
Sbjct: 108 ILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLAL 167

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G    ++++ R +     ++++  Y+ +ID LCK   +  A
Sbjct: 168 GFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDA 227

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +  DVVT+S +I+G    GQ+++A  LF +M    + P+  TF  L+  
Sbjct: 228 YELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDA 287

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +         +L  M ++ VMP+    S ++D
Sbjct: 288 LCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMD 321



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           I++NG CK    + A  L S+M   GI PD V + TL   LF   + E+A KL  EM  R
Sbjct: 493 IMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIAR 552

Query: 60  DGVAA 64
           D V A
Sbjct: 553 DVVYA 557



 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK   ++ A +++ ++LSKG   +   +N +  GL +    + A  L  +M  +
Sbjct: 458 ILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDN 517

Query: 61  GVAADTRTYTIFIDGL 76
           G+  D  TY   I  L
Sbjct: 518 GIIPDAVTYETLIQAL 533


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 114/212 (53%), Gaps = 1/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK  + E A +L + M  +  +P    +NTL  GL +   V+RA  L DE    G
Sbjct: 302 IMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSG 361

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I  DGLCK G I E+ EL + +    C  ++  Y+ LIDGLCK+ + E A 
Sbjct: 362 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAY 421

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  SL     V DVVTY+I++ GL  +G++DKA  +   M +    P+VIT+  L+ G 
Sbjct: 422 ELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 481

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIV 212
            R     +   +  +M  K+   DA + VS+V
Sbjct: 482 CRTGRVDEAHHIFKEMVSKDCTADALAYVSLV 513



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C+  + +GAL    EM  + + PDV  +N L  GL +  + ++A ++  EM   G
Sbjct: 232 IIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRG 291

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T+   +DGLCK G    +  L   +    C      Y+ LI GLCK   ++ A 
Sbjct: 292 VTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAK 351

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L         V DVVTYSI+  GL   G++D+A +L  +M      PN++T+ TLI G 
Sbjct: 352 DLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGL 411

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + ++  K  ELL  +     +PD    +I+VD L K
Sbjct: 412 CKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCK 448



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 32/250 (12%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +G CK   I+ A  L  EM  KG  P++V +NTL  GL +  + E+A++L + +   
Sbjct: 371 ILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSS 430

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYTI +DGLCK G + +++++   +    C   +  Y+ L++GLC++GR++ A
Sbjct: 431 GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEA 490

Query: 121 LELFHSLPRGVLVADVVTYSIMIHG------------------------LYN-------- 148
             +F  +      AD + Y  +++G                        +YN        
Sbjct: 491 HHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCK 550

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G++D+  ++F DM      PN+ T+  ++ G  +  +  +    L  M     +PD   
Sbjct: 551 EGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVS 610

Query: 209 VSIVVDLLAK 218
            +I++D L K
Sbjct: 611 YNIIIDGLFK 620



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK   ++ AL +   ML +G  P V+ +  L  GL    +V+ A  +F EM   
Sbjct: 441 IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 500

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              AD   Y   ++G CK+    E+ ++   +R       I  Y+ L+DG CK GRL+  
Sbjct: 501 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTP---YIDVYNALMDGYCKEGRLDEI 557

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     V ++ TY+I++ GL   G++D+A      M      P+V+++  +I G
Sbjct: 558 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDG 617

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + ++P +  ++L +M +  + PDA   + ++    K E
Sbjct: 618 LFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEE 657



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  + + A  +  EM+ +G+ PD V  N++  GL +  + ERA  L   M   
Sbjct: 266 ILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 325

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  TY   I GLCK   +  + +L           D+  YS L DGLCK GR++ A
Sbjct: 326 NCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEA 385

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +       ++VTY+ +I GL    + +KA++L   +  +   P+V+T+  ++ G
Sbjct: 386 FELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDG 445

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +     K ++++  M ++   P     + +++ L + 
Sbjct: 446 LCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRT 484



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 4/203 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++  ML  G  PD   ++ +   L +++Q+++AF + D+ +  G   +   YTI     C
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + +++E+FR +       D  AY+ +I G C+    + ALE    +    +  DV 
Sbjct: 207 KTGRLKDALEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVF 262

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+I+I GL    + DKA ++  +M +  V P+ +TF +++ G  +  +  +   LL  M
Sbjct: 263 TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 322

Query: 198 KEKNVMPDASIVSIVVDLLAKNE 220
            E+N  P     + ++  L K +
Sbjct: 323 AERNCRPSCCTYNTLISGLCKQQ 345



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 4/209 (1%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K+ + A+  +     +G K      N     L E    +R   +F+ M   G A D+ TY
Sbjct: 104 KDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTY 163

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
            + I  LC+   I ++  +    ++   + ++  Y+ L    CK+GRL+ ALE+F ++P 
Sbjct: 164 HLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS 223

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                D + Y+ +IHG       D A +   +M E  VAP+V T+  LI G  + ++  K
Sbjct: 224 ----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDK 279

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             E+LH+M ++ V PD    + ++D L K
Sbjct: 280 ASEMLHEMVDRGVTPDTVTFNSIMDGLCK 308



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 114/220 (51%), Gaps = 8/220 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK--PDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           L+NGYCK+   + A     + +  GI+  P + ++N L  G  +  +++    +F++M  
Sbjct: 512 LVNGYCKSSRTKEA-----QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMAC 566

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   + +TY I +DGLCK+G + E+     ++    C  D+ +Y+ +IDGL K+ + + 
Sbjct: 567 RGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 626

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ++   + +  +  D VTY+ ++     + + D A  +  +M +  V P+ +T+ TLI 
Sbjct: 627 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS 686

Query: 180 GFIRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAK 218
           G  + N      EL+H+M +   V+   +  + ++D L K
Sbjct: 687 GLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCK 726



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK+ +++ A      M S G  PDVV +N +  GLF+  + + A ++ D+M + 
Sbjct: 578 IVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQA 637

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   +   CK     ++V + + +     + D   Y+ LI GL ++ RL  A
Sbjct: 638 GIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA 697

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL H + R G +V+   TY+ +I  L  +G + +A  L   M  + V  N +T+   I 
Sbjct: 698 YELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFID 757

Query: 180 GFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
                 R++E S ++  +  +++     + S  ++++ L    ++   S
Sbjct: 758 RLCKEGRLDEASSLLSEMDTLRD-----EVSYTTVIIGLCKAEQLDRAS 801



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 42/249 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  +CK +  + A+ +   M+  G+ PD V +NTL  GL + +++  A++L  EM R+G
Sbjct: 649 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 708

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V +   TY   ID LCK G + +++ L   +     E +   Y+  ID LCK GRL+ A
Sbjct: 709 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEA 768

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH-------------------DLFLD 161
             L   +     + D V+Y+ +I GL    Q+D+A                    +L +D
Sbjct: 769 SSLLSEMD---TLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLID 825

Query: 162 -----------------MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                            M +   +P+VIT+  +I    ++++  K  EL  +M  + ++ 
Sbjct: 826 AFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIV- 884

Query: 205 DASIVSIVV 213
            AS VS  V
Sbjct: 885 -ASSVSYTV 892



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 60/100 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ + K K ++ AL L   M+ +G  P V+ +N +   L ++ +V++A++LFDEM   
Sbjct: 822 LLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVR 881

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G+ A + +YT+ I GLC  G   E++++   +    CE+D
Sbjct: 882 GIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEID 921



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 17/195 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           I I+  CK   ++ A +L SEM       D V + T+ IGL +  Q++RA KL  EM   
Sbjct: 754 IFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAV 810

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+   + T+ + ID   K   + E++ L   +    C   +  Y+ +I  LCK  +++ 
Sbjct: 811 KGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDK 870

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN----------AVAP 169
           A ELF  +    +VA  V+Y+++I+GL   G+  +A  +  +M  +           VAP
Sbjct: 871 AWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKWEDVAP 930

Query: 170 NV---ITFGTLIHGF 181
           +     TFG     F
Sbjct: 931 HSQFQTTFGPCYSSF 945


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   I+ A  L+ EML KG+ P V  +NT+  GLF   +   A +L+  M +  
Sbjct: 686 LLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSR 745

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY+I +DG CKN    E+ ++F++L  +  +LDI  ++ +IDGL K GR E A+
Sbjct: 746 KLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAM 805

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++P   LV  VVTY ++   L  +G +++   LF  ME++  APN      LI   
Sbjct: 806 DLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKL 865

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
           +   E  +    L K+ EKN   +AS  S+++ L ++ E      SLP
Sbjct: 866 LDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSLP 913



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 122/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK +E++ A +++ +M+ KG+KP+ V +NT+  GL +  +V+ A  +F +M   G
Sbjct: 231 IIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKG 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY   IDGLCK   +  +  +F+ +     + D   Y+ +IDGLCK+  ++ A 
Sbjct: 291 VKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAE 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    +  D +TY+I+I GL     +D+A  +F  M +  V PN  T+  LIHG+
Sbjct: 351 GVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGY 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   +  +V++ + +M   ++ PD     +++D L KN
Sbjct: 411 LSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKN 448



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C    ++ A+ L   M+S G+KP++V +NTL  G  +  +++ A+ LF EM R G
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY   ++GL ++G   E+ EL+  +   +    I  YS ++DG CK+   + A 
Sbjct: 711 VTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAF 770

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F SL    L  D++T++IMI GL+  G+ + A DLF  +  N + P+V+T+  +    
Sbjct: 771 KIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENL 830

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEI 221
           I      ++  L   M++    P++ ++ +++  LL + EI
Sbjct: 831 IEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEI 871



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + I+ A  ++ +M+ KG+KPD + +  +  GL +   V+RA  +F +M   G
Sbjct: 336 IIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G    G   E V+  + +     E D+  Y  L+D LCK+G+   A 
Sbjct: 396 VKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEAR 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF S+ R  +   V  Y IM+HG    G + + HDL   M  N ++PN   F T+I  +
Sbjct: 456 SLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAY 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +V+ +  KMK++ + P+      ++D L K
Sbjct: 516 AKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCK 552



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 119/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A+  +++M+++G+ P+ V+ N+L  GL  + + E+  +LF EM   G
Sbjct: 546 LIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG 605

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   +   +  LCK G ++E+  L  ++  +  + D+ +Y+ LIDG C + R++ A+
Sbjct: 606 IRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAV 665

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  ++V+Y+ ++HG    G++D A+ LF +M    V P V T+ T+++G 
Sbjct: 666 KLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGL 725

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R    S+  EL   M +   +      SI++D   KN
Sbjct: 726 FRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKN 763



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 70/282 (24%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  ++ +M+ +G+KPD V +NT+  GL +   +++A  +F +M   G
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360

Query: 62  VAADTRTYTIFIDGLCK------------------------------NGYIV-----ESV 86
           V  D  TYTI IDGLCK                              +GY+      E V
Sbjct: 361 VKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVV 420

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +  + +     E D+  Y  L+D LCK+G+   A  LF S+ R  +   V  Y IM+HG 
Sbjct: 421 QRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGY 480

Query: 147 YNDGQMDKAHDL-----------------------------------FLDMEENAVAPNV 171
              G + + HDL                                   F+ M++  ++PNV
Sbjct: 481 GKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNV 540

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +T+GTLI    ++      +   ++M  + V P+  + + +V
Sbjct: 541 VTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLV 582



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E    L+ EML++GI+PD+V  NT+   L +  +V  A +L D M   G
Sbjct: 581 LVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMG 640

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   IDG C    + E+V+L   +     + +I +Y+ L+ G CK+GR++ A 
Sbjct: 641 LKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAY 700

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R  +   V TY+ +++GL+  G+  +A +L+++M ++    ++ T+  ++ GF
Sbjct: 701 CLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGF 760

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   +  ++   +   ++  D    +I++D L K
Sbjct: 761 CKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFK 797



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           L+ G C  K +  A++ L  +M   G +  VV +NTL  GL +  + E A +L   M   
Sbjct: 125 LLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDG 184

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           Q    + D  +Y I I+G    G + ++  LF  + +     D+  Y+ +IDGLCK+  +
Sbjct: 185 QDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMGV---SPDVVTYNTIIDGLCKAQEV 241

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A ++F  +    +  + VTY+ +I GL    ++D A  +F  M +  V P+ +T+ T+
Sbjct: 242 DRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTI 301

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I G  +     +   +  +M ++ V PD    + ++D L K +
Sbjct: 302 IDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQ 344



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  Y K   I+  ++++ +M  +G+ P+VV + TL   L ++ +V+ A   F++M  +G
Sbjct: 511 VICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEG 570

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   +   + GLC      +  ELF  +       DI  ++ ++  LCK GR+  A 
Sbjct: 571 VTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEAR 630

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    L  DV++Y+ +I G     +MD+A  L   M    + PN++++ TL+HG+
Sbjct: 631 RLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGY 690

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +         L  +M  K V P     + +++ L ++
Sbjct: 691 CKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRS 728



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 103/214 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CKN +   A +L+  M+ KGIKP V I+  +  G  +   +     L + M  +
Sbjct: 440 LLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVAN 499

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ + R +   I    K   I E + +F  ++      ++  Y  LID LCK GR++ A
Sbjct: 500 GISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDA 559

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F+ +    +  + V ++ +++GL    + +K  +LFL+M    + P+++ F T++  
Sbjct: 560 VLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCN 619

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +     +   L+  M    + PD    + ++D
Sbjct: 620 LCKEGRVMEARRLIDSMVCMGLKPDVISYNTLID 653



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVER----------- 49
           I+I+G CK + ++ A  ++ +M+ KG+KP+   +N L  G     Q E            
Sbjct: 370 IIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAH 429

Query: 50  ------------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                   A  LFD M R G+      Y I + G  K G + E 
Sbjct: 430 DLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEM 489

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +L   +       + + ++ +I    K   ++  + +F  + +  L  +VVTY  +I  
Sbjct: 490 HDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDA 549

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++D A   F  M    V PN + F +L++G   +++  KV EL  +M  + + PD
Sbjct: 550 LCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPD 609

Query: 206 ASIVSIVVDLLAK 218
               + V+  L K
Sbjct: 610 IVFFNTVLCNLCK 622



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 10/175 (5%)

Query: 50  AFKLFDEMQRDGVAADTRTY----TIFIDGLCKNGYIVESVELFRTLRIL--KCELDIQA 103
           A KLFDE+      A  R      ++     C +   +      R LR    K   D   
Sbjct: 27  ALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCCT 86

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-HDLFLDM 162
           YS +I   C+ GRLE+    F  + +     D +  + ++ GL +  ++ +A H L   M
Sbjct: 87  YSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQM 146

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM---KEKNVMPDASIVSIVVD 214
            E      V+++ TL+ G        +  ELLH M   ++ +  PD    +IV++
Sbjct: 147 PEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G+CKN   + A  ++  + S  ++ D++  N +  GLF+  + E A  LF  +  +
Sbjct: 755 IILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPAN 814

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+     TY +  + L + G + E   LF  +
Sbjct: 815 GLVPSVVTYRLIAENLIEEGSLEELDCLFSVM 846


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 118/212 (55%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CKN E+  A  L   M   G+ PD V++ T+  G  ++  V  A KLFDEM+R  +  D 
Sbjct: 323 CKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDI 382

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I G+CK+G +VE+ E+F  + +   E D   Y+ LIDG CK+G ++ A  + + 
Sbjct: 383 VTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQ 442

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  +VVTY+ +  GL  +G++D A++L  +M    + PNV T+ T+++G  +I  
Sbjct: 443 MVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGN 502

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + ++L+ +M      PD    + ++D   K
Sbjct: 503 IEQTVKLMEEMDLAGFYPDTITYTTLMDAYCK 534



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 112/203 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK   +  A  L+ EM  K I PD+V + ++  G+ +  ++  A ++F+EM   G
Sbjct: 353 VISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG 412

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G + E+  +   +       ++  Y+ L DGLCK+G +++A 
Sbjct: 413 LEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVAN 472

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H + R  L  +V TY+ +++GL   G +++   L  +M+     P+ IT+ TL+  +
Sbjct: 473 ELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAY 532

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            ++ E +K  ELL  M  K + P
Sbjct: 533 CKMGEMAKAHELLRIMLNKRLQP 555



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  E++ A +++++M+ KG+ P+VV +  L  GL +  +++ A +L  EM R G
Sbjct: 423 LIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG 482

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ++GLCK G I ++V+L   + +     D   Y+ L+D  CK G +  A 
Sbjct: 483 LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAH 542

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L   +VT++++++G    G ++    L   M E  + PN  TF +L+  +
Sbjct: 543 ELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQY 602

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N      E+   M ++ VMPD++  +I++
Sbjct: 603 CIKNNMRATTEIYKAMHDRGVMPDSNTYNILI 634



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 1/234 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+ ++  A  +++EML KG++PD V +  L  G  +  +++ AF + ++M + G
Sbjct: 388 VIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKG 447

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT   DGLCKNG I  + EL   +     + ++  Y+ +++GLCK G +E  +
Sbjct: 448 LTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTV 507

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       D +TY+ ++      G+M KAH+L   M    + P ++TF  L++GF
Sbjct: 508 KLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGF 567

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHER 234
                      L+  M EK +MP+A+   S++     KN +   +     +H+R
Sbjct: 568 CMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR 621



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  C+  ++  A NL  +M  +G  PDVV +  +  G   I ++++  KL DE++  
Sbjct: 247 IVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGK 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I  LCKNG +VE+ +L R +R      D   Y+ +I G CK G +  A
Sbjct: 307 GLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAA 366

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  + R  +V D+VTY+ +IHG+   G+M +A ++F +M    + P+ +T+  LI G
Sbjct: 367 CKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDG 426

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +  E  +   + ++M +K + P+    + + D L KN
Sbjct: 427 YCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKN 465



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 37/250 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CKN EI+ A  L  EM  KG++P+V  +NT+  GL +I  +E+  KL +EM   G
Sbjct: 458 LADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAG 517

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TYT  +D  CK G + ++ EL R +   + +  +  ++ L++G C SG LE   
Sbjct: 518 FYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGE 577

Query: 122 EL---------------FHSL---------------------PRGVLVADVVTYSIMIHG 145
            L               F+SL                      RGV+  D  TY+I+I G
Sbjct: 578 RLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVM-PDSNTYNILIKG 636

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                 M +A  L  +M E   +    T+  LI GF +  +  +  +L  +M++  ++ +
Sbjct: 637 HCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAE 696

Query: 206 ASIVSIVVDL 215
             I  I VD+
Sbjct: 697 KDIYDIFVDV 706



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 98/183 (53%), Gaps = 16/183 (8%)

Query: 47  VERAFKLFDEM---QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-------RILK 96
           V ++F LF EM         +    + ++   L +NG+++E+ +LF  L        +  
Sbjct: 149 VSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDS 208

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           C L +   SC  +G      ++IA+++F   P   +  + V+ +I++H L   G++ +AH
Sbjct: 209 CNLFLSRLSCNFEG------IKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAH 262

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +L + M +    P+V+++G ++ G+ RI E  KV++L+ ++K K + PD  I + ++ LL
Sbjct: 263 NLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLL 322

Query: 217 AKN 219
            KN
Sbjct: 323 CKN 325



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +E    L   ML KGI P+    N+L       + +    +++  M   
Sbjct: 562 VLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR 621

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+ TY I I G CK   + E+  L + +      +    Y  LI G  K  +   A
Sbjct: 622 GVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEA 681

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
            +LF  + +  LVA+   Y I +   Y +G  +
Sbjct: 682 RKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWE 714



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  YC    +     +Y  M  +G+ PD   +N L  G  +   ++ A+ L  EM   G
Sbjct: 598 LMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKG 657

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI--LKCELDIQAYSCLIDGLCKSGRLEI 119
            +    TY   I G  K    VE+ +LF  +R   L  E DI  Y   +D   + G  EI
Sbjct: 658 YSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDI--YDIFVDVNYEEGNWEI 715

Query: 120 ALEL 123
            LEL
Sbjct: 716 TLEL 719


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 113/197 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+CK K+++ A+NL+ EM    I PDVV +N+L  GL ++ ++  A KL DEM   
Sbjct: 357 IMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 416

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   +D LCKN  + +++ L   ++    + DI  Y+ L+DGLCK+GRLE A
Sbjct: 417 GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDA 476

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L     + DV  Y+ MI G  + G  D++ DL   MEEN   PN +T+  +I  
Sbjct: 477 RIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICS 536

Query: 181 FIRINEPSKVIELLHKM 197
               +E  K  +LL +M
Sbjct: 537 LFDKDENDKAEKLLREM 553



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 124/218 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK K +  A +LYSEM+SKGI PDVV +N L  G   + +++ A  LF++M  + 
Sbjct: 218 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFEN 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+ I +DG CK   + E+  +   +     + D+  Y+ L+D  C    +  A 
Sbjct: 278 INPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAK 337

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++ +  +  ++ +YSIMIHG     ++D+A +LF +M  N + P+V+T+ +LI G 
Sbjct: 338 HIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGL 397

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ + S  ++L+ +M ++ V  D    + ++D L KN
Sbjct: 398 CKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKN 435



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   AL L   +  K ++P+VV++NT+   + ++  V  AF L+ EM   G
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I G C  G + ++ +LF  +       ++  ++ L+DG CK  RL+ A 
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAK 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV TY+ ++       +++KA  +F  + +  V PN+ ++  +IHGF
Sbjct: 303 NVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGF 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I +  + + L  +M   N++PD    + ++D L K
Sbjct: 363 CKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCK 399



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 106/183 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK + ++ A N+ + M+ +GIKPDV  +N+L      + +V +A  +F+ + + 
Sbjct: 287 ILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQR 346

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  +Y+I I G CK   + E++ LF+ +       D+  Y+ LIDGLCK G++  A
Sbjct: 347 GVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYA 406

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +  D +TY+ ++  L  + Q+DKA  L   M++  + P++ T+ TL+ G
Sbjct: 407 LKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDG 466

Query: 181 FIR 183
             +
Sbjct: 467 LCK 469



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 108/211 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+      ++L+ +M   GI  D+VI + L     ++ Q   +F +  ++ + G   +  
Sbjct: 84  KSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVI 143

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T T  I GLC  G I ++++    +  L   L+  +Y  LI+GLCK G+   AL+L   +
Sbjct: 144 TLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRV 203

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  +VV Y+ +I  +     +++A DL+ +M    ++P+V+T+  LI GF  + + 
Sbjct: 204 DGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKM 263

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +L +KM  +N+ P+    +I+VD   K
Sbjct: 264 KDATDLFNKMIFENINPNVYTFNILVDGFCK 294



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN + +  +   + ++ +++L  G +P+V+   TL  GL    Q+ +A +  D++   
Sbjct: 112 ILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVAL 171

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+GLCK G    +++L R +     + ++  Y+ +ID +CK   +  A
Sbjct: 172 GFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 231

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  DVVTY+ +I G    G+M  A DLF  M    + PNV TF  L+ G
Sbjct: 232 FDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDG 291

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +     +   +L  M ++ + PD    + ++D
Sbjct: 292 FCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMD 325



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL  + ++++ G   + V + TL  GL ++ Q   A +L   +    
Sbjct: 148 LIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKL 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   ID +CK   + E+ +L+  +       D+  Y+ LI G C  G+++ A 
Sbjct: 208 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDAT 267

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  +V T++I++ G   + ++ +A ++   M +  + P+V T+ +L+  +
Sbjct: 268 DLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E +K   + + + ++ V P+    SI++    K
Sbjct: 328 CLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCK 364


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 3/227 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF--IGLFEIHQVERAFKLFDEMQR 59
           LI+G+CK  +IE A  LY EML  GI P++V++NTL    G  +   +  AFKLFDEM  
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS 726

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G++ D   Y I IDG  K G + +++ LF   +  K    + A++ LID  CK G++  
Sbjct: 727 KGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQ-QKSVGSLSAFNSLIDSFCKHGKVIE 785

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +    L  ++VTY+I+I        M++A  LFLDME   + PN +T+ +L+ 
Sbjct: 786 ARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLL 845

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            + +I    K+I L   M+ + +  DA    ++     K   SL +L
Sbjct: 846 SYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEAL 892



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G+CK K  + A  ++  M S G+ P+   +  L  G  +   +E A ++ DEM   
Sbjct: 316 LLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITR 375

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I G+ K G + +++ LF  + +   E D   Y+ LIDG  KS  +  A
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKA 435

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L     TYS++I GL +   + KA+++   M  N V PNV  +GTLI  
Sbjct: 436 CELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKA 495

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           +++ +     IELL  M    V+PD
Sbjct: 496 YVQESRYEMAIELLKIMIANGVLPD 520



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 125/242 (51%), Gaps = 12/242 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF----EIHQVERAFKLFDEM 57
           LI G C+ K++E A  L  +M  KGIKP+   +   FI L+    EI   ER FK   +M
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA-FINLYSKSGEIQVAERYFK---DM 582

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              G+  +   YTI I G C  G  VE++  F+ +       DI+AYS +I  L K+G+ 
Sbjct: 583 LSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKT 642

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A+ +F    +  +V DV  Y+ +I G   +G ++KA  L+ +M  N + PN++ + TL
Sbjct: 643 KEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 178 I--HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           I  +G+ +    ++  +L  +M  K + PD  I  I++D   K      +L  F  HE Q
Sbjct: 703 INDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLF--HEAQ 760

Query: 236 EE 237
           ++
Sbjct: 761 QK 762



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K   IE AL +  EM+++G+K +VV +N +  G+ +  ++ +A  LF+EM   G
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY + IDG  K+  + ++ EL   ++  K       YS LI GLC S  L+ A 
Sbjct: 412 IEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + R  +  +V  Y  +I     + + + A +L   M  N V P++  +  LI G 
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  +  +   LL  M EK + P+A      ++L +K+
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKS 569



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G C+   ++ AL +   M+ KG+ PD   +  L  G  +  + + A  +F+ M   G
Sbjct: 282 FIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSG 341

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  IDG  K G I E++ +   +     +L++  Y+ +I G+ K+G +  A+
Sbjct: 342 LNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAM 401

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  D  TY+++I G      M KA +L  +M+   + P+  T+  LI G 
Sbjct: 402 SLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGL 461

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              ++  K  E+L +M    V P+
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPN 485



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 106/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G  K  E+  A++L++EML  GI+PD   +N L  G  + H + +A +L  EM+   
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARK 446

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY++ I GLC +  + ++ E+   +     + ++  Y  LI    +  R E+A+
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    ++ D+  Y+ +I GL    ++++A  L +DM E  + PN  T+G  I+ +
Sbjct: 507 ELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLY 566

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  E          M    ++P+  I +I++
Sbjct: 567 SKSGEIQVAERYFKDMLSSGIVPNNVIYTILI 598



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 45/247 (18%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y  M+   I PDV  +  +     ++  V +   +  EM+++    +  TY  FI GLC
Sbjct: 229 VYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLC 287

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP--------- 128
           + G + E++E+ + +       D   Y+ L+DG CK  R + A  +F S+P         
Sbjct: 288 QTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF 347

Query: 129 ---------------------------RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
                                      RG L  +VVTY+ MI G+   G+M KA  LF +
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRG-LKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-------D 214
           M    + P+  T+  LI G+++ ++ +K  ELL +MK + + P     S+++       D
Sbjct: 407 MLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466

Query: 215 LLAKNEI 221
           L   NE+
Sbjct: 467 LQKANEV 473



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 103/235 (43%), Gaps = 36/235 (15%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A +++   +S+G  P ++  N L   L + + +   +K++  M    +  D  TYT  I 
Sbjct: 191 ASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIK 250

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE------------ 122
             CK G +++   +   +   +C+ ++  Y+  I GLC++G ++ ALE            
Sbjct: 251 AHCKVGDVIKGKMVLSEME-KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGP 309

Query: 123 -----------------------LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
                                  +F S+P   L  +  TY+ +I G   +G +++A  + 
Sbjct: 310 DGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK 369

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +M    +  NV+T+  +I G  +  E +K + L ++M    + PD    ++++D
Sbjct: 370 DEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLID 424



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 81/174 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ Y K + +E A  L+ +M ++ I P+ + + +L +   +I    +   LF +M+  
Sbjct: 807 ILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEAR 866

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D   Y +     CK G  +E+++L     +   +L+   +  LI  LCK  ++   
Sbjct: 867 GIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTV 926

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           LEL   + +  L     T + ++ G Y  G  D+A  +   M+     P  ++ 
Sbjct: 927 LELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSL 980



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 101/200 (50%), Gaps = 5/200 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK+ ++  A  L+ +M+ K + P++V +  L     +   +E A +LF +M+   
Sbjct: 773 LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 832

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TYT  +    + G   + + LF+ +       D  AY  +    CK G+   AL
Sbjct: 833 IIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEAL 892

Query: 122 ELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L + SL  G+ + D V  +++ H L  + Q+    +L  +M +  ++ +  T  TL+ G
Sbjct: 893 KLLNKSLVEGIKLEDDVFDALIFH-LCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLG 951

Query: 181 FIRI---NEPSKVIELLHKM 197
           F +    +E SKV+ ++ ++
Sbjct: 952 FYKSGNEDEASKVLGVMQRL 971



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+  L K+  + +  +++ S+    +V DV TY+ +I      G + K   +  +ME+  
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC 272

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS---- 222
             PN+ T+   I G  +     + +E+   M EK + PD    +++VD   K + S    
Sbjct: 273 -KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 223 --LNSLPS 228
               S+PS
Sbjct: 332 LIFESMPS 339


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+   +  AL ++  M  +G   P+ V ++ L  GL E+ ++E AF L D+M   
Sbjct: 236 LLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK 295

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    TRTYT+ I  LC  G I ++  LF  +    C+ ++  Y+ LIDGLC+ G++E A
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEA 355

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  +   V+TY+ +I+G   DG++  A +L   ME+ A  PNV TF  L+ G
Sbjct: 356 NGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ +P K + LL +M +  + PD    ++++D L +
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C    I+ A NL+ EM+++G KP+V  +  L  GL    ++E A  +  +M +D
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I+G CK+G +V + EL   +    C+ +++ ++ L++GLC+ G+   A
Sbjct: 366 GIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    L  D+V+Y+++I GL  +G M+ A+ L   M    + P+ +TF  +I+ 
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINA 485

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +       L  M  K +  D    + ++D
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLID 519



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C+   +E A  L  +M  KG +P    +  L   L +   +++AF LFDEM   
Sbjct: 271 ILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIAR 330

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYT+ IDGLC++G I E+  + R +        +  Y+ LI+G CK GR+  A
Sbjct: 331 GCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPA 390

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +     +V T++ ++ GL   G+  KA  L   M +N ++P+++++  LI G
Sbjct: 391 FELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDG 450

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R    +   +LL  M   ++ PD    + +++   K 
Sbjct: 451 LCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQ 489



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 114/219 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C++ +IE A  +  +M+  GI P V+ +N L  G  +  +V  AF+L   M++ 
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + RT+   ++GLC+ G   ++V L + +       DI +Y+ LIDGLC+ G + +A
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L  S+    L  D +T++ +I+     G+ D A      M    ++ + +T  TLI G
Sbjct: 461 YKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              + +    + +L  + +  ++     +++++D+L+K 
Sbjct: 521 VCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKG 559



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK+  +  A  L + M  +  KP+V   N L  GL  + +  +A  L   M  +G
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--------------- 106
           ++ D  +Y + IDGLC+ G++  + +L  ++     E D   ++                
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVAS 496

Query: 107 --------------------LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                               LIDG+C  G+   AL +  +L +  ++    + ++++  L
Sbjct: 497 AFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDML 556

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++ +   +   + +  + P+V+T+ TL+ G IR  + S    +L  MK    +P+ 
Sbjct: 557 SKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNV 616

Query: 207 SIVSIVVDLLAK 218
              +I+++ L +
Sbjct: 617 YPYTIIINGLCQ 628



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 41/234 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF---------- 51
           +IN +CK  + + A      ML KGI  D V   TL  G+  + +   A           
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMR 541

Query: 52  -------------------KLFDEM------QRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                              KL +E+       + G+     TYT  +DGL ++G I  S 
Sbjct: 542 MLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSF 601

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +   +++  C  ++  Y+ +I+GLC+ GR+E A +L  ++    +  + VTY++M+ G 
Sbjct: 602 RMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF------IRINEPSKVIELL 194
            N+G++D+A +    M E     N   + +L+ GF      IR  +P  + EL+
Sbjct: 662 VNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELI 715



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G + +   +++L + L ++     A+  +  M+ DG       Y   ++ LCKNGY  E+
Sbjct: 155 GFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGY-TEA 213

Query: 86  VELFRTLRILKCE--LDIQAYSCLIDGLCKSGRLEIALELFHSLPR-GVLVADVVTYSIM 142
            E+F   +ILK    LD    + L+ G C+   L  AL++F  + R G    + V+YSI+
Sbjct: 214 AEMF-MCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSIL 272

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           IHGL   G++++A  L   M E    P+  T+  LI          K   L  +M  +  
Sbjct: 273 IHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGC 332

Query: 203 MPDASIVSIVVDLLAKN 219
            P+    ++++D L ++
Sbjct: 333 KPNVHTYTVLIDGLCRD 349



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 34/234 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CKN   E A     ++L  G   D  I  +L +G      +  A K+FD M R+G
Sbjct: 201 IVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREG 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A                                      +YS LI GLC+ GRLE A 
Sbjct: 261 TCAPNSV----------------------------------SYSILIHGLCEVGRLEEAF 286

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +          TY+++I  L + G +DKA +LF +M      PNV T+  LI G 
Sbjct: 287 GLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGL 346

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            R  +  +   +  KM +  + P     + +++   K+   + +    TV E++
Sbjct: 347 CRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 57/248 (22%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING C+   +E A  L S M   G+ P+ V +  +  G     +++RA +    M   
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680

Query: 61  GVAADTRTYTIFIDG----------------------------------------LCKNG 80
           G   + R Y+  + G                                        LCK G
Sbjct: 681 GYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEG 740

Query: 81  YIVESVELFRTLRILKCELDIQ-AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
              ES  L +T  ILK  + ++ A   +++  C   +    +EL   + +   V    ++
Sbjct: 741 RTDESNGLVQT--ILKSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSF 798

Query: 140 SIMIHGLYNDGQMDKAHDLFLDM-------EENAVAPNVITFGTLIHGFIRINEPSKVIE 192
            ++I GL  +G  ++A +L +++       E++ V P V          +   + S+VI+
Sbjct: 799 CLVIQGLKKEGDTERARELVMELLTSNGVVEKSGVLPYV-------ECLMETGDCSEVID 851

Query: 193 LLHKMKEK 200
           L+ ++  +
Sbjct: 852 LVDQLHSR 859


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 118/215 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K +E  + L+ EM  +G+  + V + TL  G F+    + A  +F +M   G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY I +DGLCKNG + +++ +F  L+    E DI  Y+ +I+G+CK+G++E   
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF +L    +  +V+ Y+ MI G    G  ++A  L   M+E+   PN  T+ TLI   
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRAR 583

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  +     EL+ +M+      DAS + +V ++L
Sbjct: 584 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 618



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 121/217 (55%), Gaps = 10/217 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C +  ++ A +++  M+SK   P+VV ++TL  G  +  +VE   +LF EM + G
Sbjct: 369 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG 428

Query: 62  VAADTRTYTIFIDGL-----CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           +  +T TYT  I G      C N  +V     F+ +  +    +I  Y+ L+DGLCK+G+
Sbjct: 429 LVGNTVTYTTLIHGFFQARDCDNAQMV-----FKQMVSVGVHPNILTYNILLDGLCKNGK 483

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L  A+ +F  L R  +  D+ TY+IMI G+   G+++   +LF ++    V+PNVI + T
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +I GF R     +   LL KMKE   +P++   + ++
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLI 580



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 121/237 (51%), Gaps = 13/237 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC +K I  A+ L  +M+  G KPD     TL  GLF  ++   A  L D+M + G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G I  ++ L + +   K E D+  Y+ +IDGLCK   ++ AL
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDAL 278

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  DV TYS +I  L N G+   A  L  DM E  + PNV+TF  LI  F
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           ++  +  +  +L  +M ++++ PD    S +++              F +H+R +E 
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 382



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I IN +C+  ++  AL + ++M+  G +PD+V  ++L  G     ++  A  L D+M   
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  I GL  +    E+V L   +    C+ D+  Y  +++GLCK G +++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +G + ADVV Y+ +I GL     MD A +LF +M+   + P+V T+ +LI  
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + P+    S ++D   K
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK K ++ ALNL++EM +KGI+PDV  +++L   L    +   A +L  +M    
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T++  ID   K G +VE+ +L+  +     + DI  YS LI+G C   RL+ A 
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       +VVTYS +I G     ++++  +LF +M +  +  N +T+ TLIHGF
Sbjct: 384 HMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +      +  +M    V P+    +I++D L KN
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  +I+ AL+L  +M    I+ DVVI+NT+  GL +   ++ A  LF EM   G
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I  LC  G   ++  L   +   K   ++  +S LID   K G+L  A 
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + +  +  D+ TYS +I+G     ++D+A  +F  M      PNV+T+ TLI GF
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     + +EL  +M ++ ++ +    + ++
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G   + +   A+ L  +M+ +G +PD+V + T+  GL +   ++ A  L  +M++  
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK 253

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD   Y   IDGLCK  ++ +++ LF  +       D+  YS LI  LC  GR   A 
Sbjct: 254 IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDAS 313

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +VVT+S +I     +G++ +A  L+ +M + ++ P++ T+ +LI+GF
Sbjct: 314 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 373

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               R++E   + EL   M  K+  P+    S ++    K
Sbjct: 374 CMHDRLDEAKHMFEL---MISKDCFPNVVTYSTLIKGFCK 410



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 114/220 (51%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A++L+ +M+     P +V  N L   + ++++ E    L ++MQ  G++ D  TY+
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           IFI+  C+   +  ++ +   +  L  E DI   S L++G C S R+  A+ L   +   
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D  T++ +IHGL+   +  +A  L   M +    P+++T+GT+++G  +  +    
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           + LL KM++  +  D  I + ++D L K +   ++L  FT
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFT 282



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CKN ++  A+ ++  +    ++PD+  +N +  G+ +  +VE  ++LF  +   
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +   Y   I G C+ G   E+  L + ++      +   Y+ LI    + G  E +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            EL   +       D  T  ++ + L+ DG++DK+   FLDM
Sbjct: 593 AELIKEMRSCGFAGDASTIGLVTNMLH-DGRLDKS---FLDM 630


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 116/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC    ++ A  L+  +   G K DV  +N    G  ++ +V  A ++FDEM R+G
Sbjct: 296 LMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   ID LCK G +  + E+ +T+       DI     L+DGLCKS RL+ A+
Sbjct: 356 VVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAI 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ L    L  DV +Y+I+IHG     +M +A +L  DM    + P+++T+  LI G 
Sbjct: 416 LLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            R    S    LL++M  K  +PD    SI++D L K +
Sbjct: 476 CRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQ 514



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  C+N  ++     Y+EM+  G+ P+   + +L  GL  + +    F L DEM R 
Sbjct: 190 IVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRR 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      +T+ IDGLCKNG +VE+ E+F  +     E +I   + L+ G C  G +++A
Sbjct: 250 GLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF ++       DV TY++ IHG    G++  A  +F +M    V PN++T+ +LI  
Sbjct: 310 RELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDC 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  E S   E++  M    + PD     I++D L K++
Sbjct: 370 LCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSK 409



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  E+ GA  +   M   G+ PD+V    L  GL +  ++++A  LF+++   G
Sbjct: 366 LIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +YTI I G C +  + E++ L R + +      I  YSCLIDGLC+SGR+  A 
Sbjct: 426 LTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAW 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +     + D +TYSI++  L+    +D+A  LF  M +  + P+V+ +  +I G+
Sbjct: 486 RLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGY 545

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + I L  +M  KN++PD    +I+ + + K+
Sbjct: 546 CKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKS 583



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+GYCK   +  A+ ++ EM  +G+ P++V +N+L   L +  +V  A+++   M R 
Sbjct: 330 VFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRS 389

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T  I +DGLCK+  + +++ LF  L       D+ +Y+ LI G C S R+  A
Sbjct: 390 GLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEA 449

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    LV  +VTYS +I GL   G++  A  L  +M      P+ IT+  L+  
Sbjct: 450 MNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDA 509

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +     + + L ++M ++ + PD    +I++D   K+E
Sbjct: 510 LWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSE 549



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 87/151 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C ++ +  A+NL  +M  K + P +V ++ L  GL    ++  A++L +EM   
Sbjct: 435 ILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVK 494

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT TY+I +D L K  ++ E+V LF  +     E D+  Y+ +IDG CKS R++ A
Sbjct: 495 GPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEA 554

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           + LF  +    LV D+VTY+I+ + ++  G 
Sbjct: 555 INLFREMHMKNLVPDIVTYTILFNAVFKSGS 585



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 106/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK+K ++ A+ L+++++  G+ PDV  +  L  G     ++  A  L  +M   
Sbjct: 400 ILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLK 459

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY+  IDGLC++G I  +  L   + +     D   YS L+D L K   L+ A
Sbjct: 460 NLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEA 519

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+ + +  L  DV+ Y+IMI G     ++D+A +LF +M    + P+++T+  L + 
Sbjct: 520 VFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNA 579

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             +    S   + ++ +++ N  P
Sbjct: 580 VFKSGSNSYEWKFVNVIRDINPPP 603



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 8/187 (4%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
            F +  V  +F +F ++ + G   DT      + GLC NG +++++E    +      L+
Sbjct: 82  FFHLGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLN 141

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPR-------GVLV-ADVVTYSIMIHGLYNDGQM 152
             +Y  LI+GLC++GR+  A+ L   + +       G  V  +VV YSI+I  L  +G +
Sbjct: 142 EVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFV 201

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           D+  + + +M  N V PN  T+G+LI G   + +  +   L+ +M  + +     + +++
Sbjct: 202 DEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVL 261

Query: 213 VDLLAKN 219
           +D L KN
Sbjct: 262 IDGLCKN 268


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 122/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK KE++ A++L SEM+ KG+ PDV    +L  G  E+ +   A +LF  M+  G
Sbjct: 365 LIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHG 424

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T  + +DGL K     E+V LFR +     +LDI  Y+ ++DG+CK G+L  A 
Sbjct: 425 QVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDAR 484

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+IMI GL  +G +D A +L   M+EN   PN  ++   + G 
Sbjct: 485 KLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGL 544

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R  + ++  + L  MK+K    DA+   +++  L+ NE
Sbjct: 545 LRKYDIARSRKYLQIMKDKGFPVDATTAELLIRFLSANE 583



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEM-QR 59
           +++G CK   +  AL L  EM    ++P+VV +N L  GL  E         LF+EM   
Sbjct: 221 ILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAE 280

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D +T++I +DG CK G ++ +  +   +  +  E ++  Y+ LI G C   ++E 
Sbjct: 281 KGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEE 340

Query: 120 ALELFHSLPR---GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           A+ +F  + R   G L   VVT++ +IHG     ++DKA  L  +M    + P+V T+ +
Sbjct: 341 AMRVFGLMVREGEGCL-PSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTS 399

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           LI GF  + +P    EL   MKE   +P+    ++V+D L K
Sbjct: 400 LIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLK 441



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I IN  C  ++      +   M   G++P +V  NT+  GL     V  A  L ++M+  
Sbjct: 115 IAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENL 174

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   + RTY   ++GLCK G    ++E  + +       ++  Y+ ++DGLCK G +  A
Sbjct: 175 GYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEA 234

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYND-GQMDKAHDLFLDM-EENAVAPNVITFGTLI 178
           L L H +    +  +VVTY+ +I GL  + G   +   LF +M  E  + P+V TF  L+
Sbjct: 235 LGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILV 294

Query: 179 HGFIR 183
            GF +
Sbjct: 295 DGFCK 299



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 2/198 (1%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           DV   N     L  + +    F +   M + G+     T    ++GLC  G +  ++ L 
Sbjct: 109 DVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLV 168

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             +  L    + + Y  L++GLCK G    ALE    + +  L  +VV Y+ ++ GL   
Sbjct: 169 EKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKR 228

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI-RINEPSKVIELLHKM-KEKNVMPDAS 207
           G + +A  L  +M    V PNV+T+  LI G         + + L ++M  EK ++PD  
Sbjct: 229 GLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQ 288

Query: 208 IVSIVVDLLAKNEISLNS 225
             SI+VD   K  + L +
Sbjct: 289 TFSILVDGFCKEGLLLRA 306



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK  ++  A  L S +L KG+K D   +N +  GL     ++ A +L  +M+ +
Sbjct: 469 IMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKEN 528

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G   +  +Y +F+ GL +   I  S +  + ++
Sbjct: 529 GCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMK 561


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K + +  A+ L  EML  G  P VV + TL  GL    + + A ++ D M   G
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
            A +  TY+  +DGLCK G + E++  F  + R       + AYS LIDGLCK+G+++ A
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEA 438

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + R   + DVVT+SI+I+GL + G++D   +LF  M E    P+++T+ TL+  
Sbjct: 439 YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDR 498

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
             R +   +  +L  +M+   + PD S
Sbjct: 499 LCRASRVDEAFDLFQQMRSDGLSPDRS 525



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K   +E A+ +  +M   G  PD V +NTL  G F+  ++  A  L  EM   G
Sbjct: 284 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG 343

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT    GLC++G   E+VE+   +    C  +   YS ++DGLCK+GR+  AL
Sbjct: 344 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEAL 403

Query: 122 ELFHSLPRGVLVAD-VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             F  + R  +VA  V+ YS +I GL   G++D+A++    M      P+V+TF  LI+G
Sbjct: 404 GYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILING 463

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     +EL   M E+  +PD    + +VD L +
Sbjct: 464 LCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCR 501



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 2/240 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEM--LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           ++I G CK  EIE A  +  EM  +  G+ PDV+  N++  GL +  ++  A  +F    
Sbjct: 176 LIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 235

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G   +  TY+  IDGL K   + E+++L   +  L C  +   YS ++DGL K GR+E
Sbjct: 236 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 295

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ +   +     + D VTY+ +I G +   ++ +A  L  +M E    P+V+T+ TL 
Sbjct: 296 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 355

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           HG  R     + +E+L  M  +   P+A   S +VD L K      +L  F    R E V
Sbjct: 356 HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV 415



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK + I  A N++   L +G +P+VV ++TL  GL ++ +++ A +L  +M   G
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+T TY+  +DGL K G + ++V + R +R   C  D   Y+ LIDG  K  RL  A+
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 333

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +        VVTY+ + HGL   G+ D+A ++   M     APN IT+ +++ G 
Sbjct: 334 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 393

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAK 218
            +    ++ +    KM +++ V P     S ++D L K
Sbjct: 394 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCK 431



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+++++ A+ L+ +M+ K I PDVV +  L  GL +  +V+ A+ LF+E +  G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIA 120
                 TY   IDGLCK G I  ++ L+  + I       +  YS LIDGLC+   ++  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       + VTY+ +++ L   G+  +A  L   M  N   P +ITFG +I G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 181 FIRINEPSKVIELLHK--MKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  E      ++ +  M E  + PD    + V+D L K +  L++
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDA 227



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 5/195 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G C++   + A+ +   M ++G  P+ + ++++  GL +  +V  A   F++M RD 
Sbjct: 354 LCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDE 413

Query: 62  VAAD-TRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           V A     Y+  IDGLCK G I E+ E   R +R  +   D+  +S LI+GLC +GR++ 
Sbjct: 414 VVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIP-DVVTFSILINGLCDAGRIDT 472

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            LELF  +     V D+VTY+ ++  L    ++D+A DLF  M  + ++P+  T  T+IH
Sbjct: 473 GLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIH 532

Query: 180 GFIRIN--EPSKVIE 192
           G + +N  E +K I+
Sbjct: 533 GLLEVNRDEDAKRIQ 547



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 41/76 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C    I+  L L+  M  +G  PD+V + TL   L    +V+ AF LF +M+ D
Sbjct: 459 ILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSD 518

Query: 61  GVAADTRTYTIFIDGL 76
           G++ D  T    I GL
Sbjct: 519 GLSPDRSTRRTMIHGL 534


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  +  +I  A ++Y  M S+G  PDVV  +T+  GL +  ++  A ++F  M+  G
Sbjct: 276 LIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 335

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +   Y+  I GLCK   +  ++E+   ++   C  D   Y+ LIDGLCKSG +E A 
Sbjct: 336 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 395

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +       DV TY+I++ G    G  D A  +F DM  +  +PNV+T+GTLI G 
Sbjct: 396 AFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGL 455

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + +K       MKE+   PD+ + S +VD L K+
Sbjct: 456 CKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKS 493



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   +E A++L  +++  G  PDVV + +L  GL +  +   A+KLF EM   G
Sbjct: 206 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 265

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT  YT  I GL + G I ++  +++T+    C  D+   S +IDGLCK+GR+  A+
Sbjct: 266 LVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAV 325

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F S+    L  + V YS +IHGL    +MD A ++   M++    P+ IT+  LI G 
Sbjct: 326 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 385

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +         +M E    PD    +I+V    K
Sbjct: 386 CKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   KNK+I+ A+ L  ++ + G  P +  +N L  GL ++ ++E A  L  ++  +G
Sbjct: 171 IVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 230

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  IDGL K     E+ +LF+ + +    LD   Y+ LI GL ++G++  A 
Sbjct: 231 CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQAS 290

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++ ++     V DVVT S MI GL   G++  A  +F  ME   +APN + +  LIHG 
Sbjct: 291 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 350

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +    +E+L +MK+    PD    +I++D L K+
Sbjct: 351 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 388



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   I  A+ ++  M ++G+ P+ V+++ L  GL +  +++ A ++  +M++  
Sbjct: 311 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 370

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY I IDGLCK+G +  +   F  +    C+ D+  Y+ L+ G CK+G  + A 
Sbjct: 371 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAAC 430

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       +VVTY  +I GL    Q+ KA   F  M+E    P+   + +L+ G 
Sbjct: 431 GVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGL 490

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +  +      L  +M+   V    +   ++  L   N +
Sbjct: 491 CKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRV 530



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI GYC  +E E A  +  EM    G+ P +  HN +  GL +  +V  A   F+    
Sbjct: 99  VLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTT 158

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G   D  TYT  +D L KN  I ++V L   +    C   I  Y+ L++GLCK GRLE 
Sbjct: 159 NGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 218

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A++L   +       DVVTY+ +I GL  + +  +A+ LF +M    +  + + +  LI 
Sbjct: 219 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIR 278

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G ++  +  +   +   M  +  +PD   +S ++D L K
Sbjct: 279 GLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 2/183 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK+ ++E A   + EML  G KPDV  +N L  G  +    + A  +FD+M   
Sbjct: 380 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSS 439

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + +  TY   I GLCK   + ++   F+ ++   C  D   YS L+DGLCKSG+LE  
Sbjct: 440 HCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGG 499

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + R   VA+  T + +I  L    ++D+A  LF  + +  + P+   + ++I  
Sbjct: 500 CMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIIST 557

Query: 181 FIR 183
            I+
Sbjct: 558 LIK 560



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 2/226 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L++ + + K    A NL    L+    PDV   N L  G     + E AF +  EM+ D 
Sbjct: 65  LLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDY 124

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA   +T+ + + GLCK+G ++ +++ F T     C +DI  Y+ ++D L K+ +++ A
Sbjct: 125 GVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDA 184

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +        + TY+ +++GL   G++++A DL   + +N   P+V+T+ +LI G
Sbjct: 185 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 244

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEISLNS 225
             +     +  +L  +M  + ++ D     +++  LL   +I   S
Sbjct: 245 LGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQAS 290


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 122/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML +GIKP  ++++ +  GLFE  +   A   F EM   G
Sbjct: 578 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESG 637

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY I + GL KN    E++ LF+ LR +  +++I   + +IDG+ ++ R+E A 
Sbjct: 638 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 697

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV  VVTYSIMI  L  +G +++A D+F  M+     PN      ++   
Sbjct: 698 DLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVREL 757

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 758 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFS 793



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 117/216 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KPDVV + T+   L  I +++ A + F++M   
Sbjct: 402 VLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ 461

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D   Y   I G C +G ++++ EL   +      LDI  +S +I+ LCK GR+  A
Sbjct: 462 GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA 521

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L  D V Y++++ G    G+M+KA  +F  M    + PNV+ +GTL++G
Sbjct: 522 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 581

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +I    + + L  +M ++ + P   + SI++D L
Sbjct: 582 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A     +M++K + P+   +N L  G     Q + A ++F EM+R  
Sbjct: 263 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 322

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T ++ +  LCK G I E+ ++F T+ +     D+ +Y+ +++G    G L    
Sbjct: 323 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 382

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  D  T++++I    N G +DKA  +F +M ++ V P+V+T+ T+I   
Sbjct: 383 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 442

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            RI +    +E  ++M ++ V PD
Sbjct: 443 CRIGKMDDAMEKFNQMIDQGVAPD 466



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L+ EM+ +GI PD+V +N++   L +   +++A     +M    
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G    G   E+V +F+ +R      D+   S L+  LCK G+++ A 
Sbjct: 288 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DV +Y+IM++G    G +    DLF  M  + +AP+  TF  LI  +
Sbjct: 348 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 407

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K + + ++M++  V PD      V+  L +
Sbjct: 408 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 444



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++   +    E AL  + ++L  G++ +++I N L  G  E  + + A   L      
Sbjct: 119 ILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPE 178

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y+I +  LC  G   ++ +L R +      C  ++ AY+ +IDG  K G +
Sbjct: 179 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 238

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LF  + +  +  D+VTY+ ++H L     MDKA      M    V PN  T+  L
Sbjct: 239 NKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNL 298

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+G+    +  + + +  +M+  +++PD   +S+++  L K
Sbjct: 299 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 107/219 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C+  +++ A+  +++M+ +G+ PD   +N L  G      + +A +L  E+  +G
Sbjct: 438 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG 497

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  I+ LCK G ++++  +F     +    D   Y+ L+DG C  G++E AL
Sbjct: 498 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 557

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F ++    +  +VV Y  +++G    G++D+   LF +M +  + P+ I +  +I G 
Sbjct: 558 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                        H+M E  +  D    +IV+  L KN 
Sbjct: 618 FEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNR 656



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C +  +  A  L SE+++ G+  D+V  +++   L ++ +V  A  +FD     G
Sbjct: 473 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + +DG C  G + +++ +F  +     E ++  Y  L++G CK GR++  L
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +    + YSI+I GL+  G+   A   F +M E+ +A ++ T+  ++ G 
Sbjct: 593 SLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 652

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     + I L  +++  NV  +   ++ ++D
Sbjct: 653 FKNRCFDEAIFLFKELRAMNVKINIITLNTMID 685



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CK  +I+ A +++  M  KG  PDV  +N +  G      +     LFD M  D
Sbjct: 332 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 391

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D  T+ + I      G + +++ +F  +R    + D+  Y  +I  LC+ G+++ A
Sbjct: 392 GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 451

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E F+ +    +  D   Y+ +I G    G + KA +L  ++  N +  +++ F ++I+ 
Sbjct: 452 MEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINN 511

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD---LLAKNEISL 223
             ++        +        + PDA + ++++D   L+ K E +L
Sbjct: 512 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 557



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+ K  + AL+ L       G  PDV  ++ L   L +  +  +A  L   M   
Sbjct: 155 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 214

Query: 61  GV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   + +   Y   IDG  K G + ++ +LF+ +       D+  Y+ ++  LCK+  ++
Sbjct: 215 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 274

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++ +  TY+ +I+G  + GQ  +A  +F +M  +++ P+V+T   L+
Sbjct: 275 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 334

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  +  ++   M  K   PD    +I+++
Sbjct: 335 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 370



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 56/224 (25%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELF-------RTL 92
           E A  L DE+QR G     R    F+  L        C++G  + +V LF       +  
Sbjct: 49  EEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGP 107

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF---------------------------- 124
           R+L        Y+ L+D   ++ R E+AL  F                            
Sbjct: 108 RVL--SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRT 165

Query: 125 --------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV--APNVITF 174
                   H  P    V DV +YSI++  L + G+  +A DL   M E     +PNV+ +
Sbjct: 166 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAY 225

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+I GF +  + +K  +L  +M ++ + PD    + VV  L K
Sbjct: 226 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCK 269


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 120/212 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  E++    L  EM   G K DVV +N L     +  ++E A+  F  M+R+G
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  T++ F+D  CK G + E+++LF  +R+    L+   Y+CLIDG CK+GRL+ A+
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAI 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +VVTY++++ GL  + ++ +A D+   ME+  V  N + + TLIHG 
Sbjct: 349 VLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  K + LL +MK K +  D S+   ++
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGALI 440



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ A +L ++M   G++P+ +I+ T+    F+  +V  A  +  ++   G
Sbjct: 439 LIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   IDGLCK G I E++  F  +R L  + ++QAY+ L+DGLCK+G L  A+
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  D V Y+ ++ G    G +  A  L   M ++ +  ++  +   I GF
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGF 618

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +N   +  E+  +M    + PD ++ + ++
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 650



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK   +E A   ++ M  +G+  +VV  +T      +   V  A KLF +M+  G
Sbjct: 264 LINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  IDG CK G + +++ L   +      L++  Y+ L+DGLCK  ++  A 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  + A+ + Y+ +IHG + +   +KA  L  +M+   +  ++  +G LI G 
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +++  +   LL KM E  + P+  I + ++D   K+
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKS 481



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++ +CK   +  A+ L+++M  +G+  +   +  L  G  +  +++ A  L DEM R G
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT+ +DGLCK   + E+ ++ R +       +   Y+ LI G   +   E AL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D+  Y  +I GL N  ++D+A  L   M+E+ + PN I + T++   
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  + I +L K+ +    P+      ++D L K
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCK 515



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   ++ A+ L  EM+ +G+  +VV +  L  GL +  +V  A  +   M++ G
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+   YT  I G   N    +++ L   ++    ELDI  Y  LI GLC   +L+ A 
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAK 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  + + Y+ M+   +  G++ +A  +   + ++   PNVIT+  LI G 
Sbjct: 454 SLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGL 513

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + I   +KM++  + P+    + +VD L KN
Sbjct: 514 CKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKN 551



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+  NK  E AL L SEM +KG++ D+ ++  L  GL  +H+++ A  L  +M   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  +D   K+G + E++ + + +     + ++  Y  LIDGLCK+G ++ A+
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    L  +V  Y+ ++ GL  +G +++A  LF +M    ++ + + +  L+ G+
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGY 583

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++         L  KM +  +  D
Sbjct: 584 LKQGNLHDAFALKAKMIDSGLQLD 607



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+ ++  A+ +  ++L  G +P+V+ +  L  GL +   ++ A   F++M+  G+  + +
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            YT  +DGLCKNG + E+V+LF  +      LD   Y+ L+DG  K G L  A  L   +
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L  D+  Y+  I G  N   M +A ++F +M  + +AP+   +  LI  + ++   
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNL 659

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVD 214
            + I L  +M+   V+P  +      D
Sbjct: 660 EEAISLQDEMER--VLPSCTDSDTATD 684



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+V   N +   L +  ++  A  LF  M+  G   D  T+   IDG  K G + E  +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +R   C+ D+  Y+ LI+  CK GR+E A   F ++ R  ++A+VVT+S  +     
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G + +A  LF  M    +A N  T+  LI G  +       I LL +M  + V  +   
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 209 VSIVVDLLAK 218
            +++VD L K
Sbjct: 366 YTVLVDGLCK 375



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + P+    N + + L          +LF+++     A +  T+ I ID LCK G + E+ 
Sbjct: 153 VPPNTRTCNHILLRLARDRSGRLVRRLFEQLP----APNVFTFNIVIDFLCKEGELAEAR 208

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  ++ + C  D+  ++ LIDG  K G L+   +L   + R    ADVVTY+ +I+  
Sbjct: 209 SLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCF 268

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+M+ A+  F  M+   V  NV+TF T +  F +     + ++L  +M+ + +  + 
Sbjct: 269 CKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNE 328

Query: 207 SIVSIVVD 214
              + ++D
Sbjct: 329 FTYTCLID 336



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 2/179 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   I+ A++ +++M   G+ P+V  +  L  GL +   +  A +LF+EM   G
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   YT  +DG  K G + ++  L   +     +LD+  Y+C I G C    +  A 
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           E+F  +    +  D   Y+ +I      G +++A  L  +ME   V P+     T   G
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER--VLPSCTDSDTATDG 685



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++  ++ +ID LCK G L  A  LF  +     + DVVT++ +I G    G++D+   L 
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +M  +    +V+T+  LI+ F +             MK + VM +    S  VD   K 
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKE 306

Query: 220 EISLNSLPSFT 230
            +   ++  F 
Sbjct: 307 GLVREAMKLFA 317


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 1/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK  + E A +L + M  +  +P    +NTL  GL +   V+RA  L DE    G
Sbjct: 51  IMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I  DGLCK G I E+ EL + +    C  ++  Y+ LIDGLCK+ + E A 
Sbjct: 111 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAY 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  +L     V DVVTY+I++ GL  +G++DKA  +   M +    P+VIT+  L+ G 
Sbjct: 171 ELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIV 212
            R     +   +  +M  K+   DA + VS+V
Sbjct: 231 CRTGRVDEAHHIFKEMVSKDCTADALAYVSLV 262



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 99/197 (50%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  + + PDV  +N L  GL +  + ++A ++  EM   GV  DT T+   +DGLCK G 
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
              +  L   +    C      Y+ LI GLCK   ++ A  L         V DVVTYSI
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +  GL   G++D+A +L  +M  N   PN++T+ TLI G  + ++  K  ELL  +    
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 202 VMPDASIVSIVVDLLAK 218
            +PD    +I+VD L K
Sbjct: 181 FVPDVVTYTIIVDGLCK 197



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 32/250 (12%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +G CK   I+ A  L  EM   G  P++V +NTL  GL +  + E+A++L + +   
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSS 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYTI +DGLCK G + +++++   +    C   +  Y+ L++GLC++GR++ A
Sbjct: 180 GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHG------------------------LYN-------- 148
             +F  +      AD + Y  +++G                        +YN        
Sbjct: 240 HHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCK 299

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G++D+  ++F DM      PN+ T+  ++ G  +  +  +    L  M     +PD   
Sbjct: 300 EGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVS 359

Query: 209 VSIVVDLLAK 218
            +I++D L K
Sbjct: 360 YNIIIDGLFK 369



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK   ++ AL +   ML +G  P V+ +  L  GL    +V+ A  +F EM   
Sbjct: 190 IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              AD   Y   ++G CK+    E+ ++   +R       I  Y+ L+DG CK GRL+  
Sbjct: 250 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTP---YIDVYNALMDGYCKEGRLDEI 306

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     V ++ TY+I++ GL   G++D+A      M      P+V+++  +I G
Sbjct: 307 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDG 366

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + ++P +  ++L +M +  + PDA   + ++    K E
Sbjct: 367 LFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEE 406



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  + + A  +  EM+ +G+ PD V  N++  GL +  + ERA  L   M   
Sbjct: 15  ILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  TY   I GLCK   +  +  L           D+  YS L DGLCK GR++ A
Sbjct: 75  NCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +       ++VTY+ +I GL    + +KA++L   +  +   P+V+T+  ++ G
Sbjct: 135 FELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDG 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +     K ++++  M ++   P     + +++ L + 
Sbjct: 195 LCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRT 233



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 114/220 (51%), Gaps = 8/220 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK--PDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           L+NGYCK+   + A     + +  GI+  P + ++N L  G  +  +++    +F++M  
Sbjct: 261 LVNGYCKSSRTKEA-----QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMAC 315

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   + +TY I +DGLCK+G + E+     ++    C  D+ +Y+ +IDGL K+ + + 
Sbjct: 316 RGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 375

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ++   + +  +  D VTY+ ++     + + D A  +  +M +  V P+ +T+ TLI 
Sbjct: 376 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS 435

Query: 180 GFIRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAK 218
           G  + N      EL+H+M +   V+   +  + ++D L K
Sbjct: 436 GLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCK 475



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 42/249 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  +CK +  + A+ +   M+  G+ PD V +NTL  GL + +++  A++L  EM R+G
Sbjct: 398 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 457

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V +   TY   ID LCK G + +++ L   +     E +   Y+  ID LCK GRL+ A
Sbjct: 458 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEA 517

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH-------------------DLFLD 161
             L   +     + D V+Y+ +I GL    Q+D+A                    +L +D
Sbjct: 518 SSLLSEMD---TLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLID 574

Query: 162 -----------------MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                            M +   +P+VIT+  +I    ++++  K  EL  +M  + ++ 
Sbjct: 575 AFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIV- 633

Query: 205 DASIVSIVV 213
            AS VS  V
Sbjct: 634 -ASSVSYTV 641



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK+ +++ A      M S G  PDVV +N +  GLF+  + + A ++ D+M + 
Sbjct: 327 IVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQA 386

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   +   CK     ++V + + +     + D   Y+ LI GL ++ RL  A
Sbjct: 387 GIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA 446

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL H + R G +V+   TY+ +I  L  +G + +A  L   M  + V  N +T+   I 
Sbjct: 447 YELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFID 506

Query: 180 GFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
                 R++E S ++  +  +++     + S  ++++ L    ++   S
Sbjct: 507 RLCKEGRLDEASSLLSEMDTLRD-----EVSYTTVIIGLCKAEQLDRAS 550



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 69/127 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ + K K ++ AL L   M+ +G  P V+ +N +   L ++ +V++A++LFDEM   
Sbjct: 571 LLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVR 630

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A + +YT+ I GLC  G   E++++   +    CE+D      L   L   GR E A
Sbjct: 631 GIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEA 690

Query: 121 LELFHSL 127
            EL   +
Sbjct: 691 AELLRRM 697



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 4/201 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           I I+  CK   ++ A +L SEM       D V + T+ IGL +  Q++RA KL  EM   
Sbjct: 503 IFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAV 559

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+   + T+ + ID   K   + E++ L   +    C   +  Y+ +I  LCK  +++ 
Sbjct: 560 KGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDK 619

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +    +VA  V+Y+++I+GL   G+  +A  +  +M  +    + +    L  
Sbjct: 620 AWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYL 679

Query: 180 GFIRINEPSKVIELLHKMKEK 200
                    +  ELL +M  K
Sbjct: 680 ALRGQGRGEEAAELLRRMTTK 700



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  DV TY+I+I GL    + DKA ++  +M +  V P+ +TF +++ G  +  +  +  
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 65

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LL  M E+N  P     + ++  L K +
Sbjct: 66  SLLAVMAERNCRPSCCTYNTLISGLCKQQ 94


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 120/212 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  E++    L  EM   G K DVV +N L     +  ++E A+  F  M+R+G
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  T++ F+D  CK G + E+++LF  +R+    L+   Y+CLIDG CK+GRL+ A+
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAI 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +VVTY++++ GL  + ++ +A D+   ME+  V  N + + TLIHG 
Sbjct: 349 VLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  K + LL +MK K +  D S+   ++
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGALI 440



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK   +E A   ++ M  +G+  +VV  +T      +   V  A KLF +M+  G
Sbjct: 264 LINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  IDG CK G + +++ L   +      L++  Y+ L+DGLCK  ++  A 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  + A+ + Y+ +IHG + +   +KA  L  +M+   +  ++  +G LI G 
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +++  +   LL KM E  + P+  I + ++D   K+
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKS 481



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 104/215 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++ +CK   +  A+ L+++M  +G+  +   +  L  G  +  +++ A  L DEM R G
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT+ +DGLCK   + E+ ++ R +       +   Y+ LI G   +   E AL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D+  Y  +I GL N  ++D+A  L   M+E+ + PN I + T++   
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +  +  + I +L K+ +    P+   ++  V L 
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLF 513



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+V   N +   L +  ++  A  LF  M+  G   D  T+   IDG  K G + E  +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +R   C+ D+  Y+ LI+  CK GR+E A   F ++ R  ++A+VVT+S  +     
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G + +A  LF  M    +A N  T+  LI G  +       I LL +M  + V  +   
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 209 VSIVVDLLAK 218
            +++VD L K
Sbjct: 366 YTVLVDGLCK 375



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + P+    N + + L          +LF+++     A +  T+ I ID LCK G + E+ 
Sbjct: 153 VPPNTRTCNHILLRLARDRSGRLVRRLFEQLP----APNVFTFNIVIDFLCKEGELAEAR 208

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  ++ + C  D+  ++ LIDG  K G L+   +L   + R    ADVVTY+ +I+  
Sbjct: 209 SLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCF 268

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+M+ A+  F  M+   V  NV+TF T +  F +     + ++L  +M+ + +  + 
Sbjct: 269 CKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNE 328

Query: 207 SIVSIVVD 214
              + ++D
Sbjct: 329 FTYTCLID 336



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 22/207 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+  NK  E AL L SEM +KG++ D+ ++  L  GL  +H+++ A  L  +M   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 62  VAADTRTYTIFIDGLCK----------------------NGYIVESVELFRTLRILKCEL 99
           +  +   YT  +D   K                      NG + E+V+LF  +      L
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSL 523

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D   Y+ L+DG  K G L  A  L   +    L  D+  Y+  I G  N   M +A ++F
Sbjct: 524 DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVF 583

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINE 186
            +M  + +AP+   +  LI     I E
Sbjct: 584 SEMIGHGIAPDRAVYNCLITQIPEIRE 610



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++  ++ +ID LCK G L  A  LF  +     + DVVT++ +I G    G++D+   L 
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +M  +    +V+T+  LI+ F +             MK + VM +    S  VD   K 
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKE 306

Query: 220 EISLNSLPSFT 230
            +   ++  F 
Sbjct: 307 GLVREAMKLFA 317


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 118/203 (58%), Gaps = 2/203 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G+CK+K ++ ALNL+ EM  K + P +V + +L  GL +  ++   ++L DEM   
Sbjct: 250 IMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDR 309

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ AD  TY   IDGLCKNG++  ++ LF  ++  +   D   ++ L+DGLCK GRL+ A
Sbjct: 310 GIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXR--FDRLTFTILLDGLCKGGRLKDA 367

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  L       DV  Y++MI+G    G +++A  +   ME+N   P+ +TF  +I+ 
Sbjct: 368 QEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINA 427

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               +E  K  +LLH+M  + ++
Sbjct: 428 LFEKDENDKAEKLLHEMIARGLL 450



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 117/219 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +C   +I    ++ +++L +G +P  +   TL  GL    QV +A    D++   
Sbjct: 110 ILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQ 169

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +Y   I+G+CK G    +++L R +     + +++ Y+ +ID LCK   +  A
Sbjct: 170 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 229

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    + A+VV+Y+IMI G      +D+A +LF +M +  + P ++T+G+L+ G
Sbjct: 230 YGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDG 289

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +    S V EL+ +M ++ +  D    + ++D L KN
Sbjct: 290 LCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKN 328



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 6/207 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +  GA+ L  ++  +  KP+V ++NT+   L +   V  A+ LF EM   G
Sbjct: 181 LINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG 240

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++A+  +Y I I G CK+  + E++ LF+ +        I  Y  L+DGLCKSGR+    
Sbjct: 241 ISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVW 300

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    + ADV+TY+ +I GL  +G +D+A  LF  M++     + +TF  L+ G 
Sbjct: 301 ELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXRF--DRLTFTILLDGL 358

Query: 182 I---RINEPSKVIE-LLHKMKEKNVMP 204
               R+ +  +V + LL K  + +V P
Sbjct: 359 CKGGRLKDAQEVFQDLLTKEYDLDVYP 385



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM +KGI  +VV +N +  G  +   V+ A  LF EM +  
Sbjct: 216 IIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKN 275

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   +DGLCK+G I    EL   +       D+  Y+ LIDGLCK+G L+ A+
Sbjct: 276 MVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAI 335

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +       D +T++I++ GL   G++  A ++F D+       +V  +  +I+G+
Sbjct: 336 ALFNKMKDXRF--DRLTFTILLDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGY 393

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +     + + +  KM++   +P A    I+++ L
Sbjct: 394 CKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINAL 428



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   ++  AL+ + ++L++GIK D V + TL  G+ +I     A KL  ++    
Sbjct: 146 LIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRL 205

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK   + E+  LF  +       ++ +Y+ +I G CKS  ++ AL
Sbjct: 206 TKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEAL 265

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +V  +VTY  ++ GL   G++    +L  +M +  +  +VIT+ +LI G 
Sbjct: 266 NLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGL 325

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + I L +KMK+     D    +I++D L K
Sbjct: 326 CKNGHLDRAIALFNKMKDXRF--DRLTFTILLDGLCK 360



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 35/245 (14%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           + ++ A++ ++ ML     P V+  N +      +     A  L   ++  G+  D  T 
Sbjct: 49  QNVDDAVSQFNSMLCMRHTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTL 108

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
            I ++  C  G I     +   +     +     ++ LI GLC  G++  AL     L  
Sbjct: 109 NILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLA 168

Query: 130 GVLVADVVTYSIMIHGLYN--------------DGQMDK--------------------- 154
             +  D V+Y  +I+G+                DG++ K                     
Sbjct: 169 QGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSE 228

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A+ LF +M    ++ NV+++  +I GF +     + + L  +M +KN++P       ++D
Sbjct: 229 AYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMD 288

Query: 215 LLAKN 219
            L K+
Sbjct: 289 GLCKS 293



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 76/179 (42%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
            I  V+ A   F+ M           +   +D      +   +V L   L +   + D  
Sbjct: 47  SIQNVDDAVSQFNSMLCMRHTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFF 106

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             + L++  C  G++     +   + +       +T++ +I GL   GQ++KA      +
Sbjct: 107 TLNILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKL 166

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               +  + +++GTLI+G  +I +    I+L+ K+  +   P+  + + ++D L K ++
Sbjct: 167 LAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQL 225


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 120/212 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  E++    L  EM   G K DVV +N L     +  ++E A+  F  M+R+G
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  T++ F+D  CK G + E+++LF  +R+    L+   Y+CLIDG CK+GRL+ A+
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAI 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +VVTY++++ GL  + ++ +A D+   ME+  V  N + + TLIHG 
Sbjct: 349 VLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  K + LL +MK K +  D S+   ++
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGALI 440



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ A +L ++M   G++P+ +I+ T+    F+  +V  A  +  ++   G
Sbjct: 439 LIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   IDGLCK G I E++  F  +R L  + ++QAY+ L+DGLCK+G L  A+
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  D V Y+ ++ G    G +  A  L   M ++ +  ++  +   I GF
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGF 618

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +N   +  E+  +M    + PD ++ + ++
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 650



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK   +E A   ++ M  +G+  +VV  +T      +   V  A KLF +M+  G
Sbjct: 264 LINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  IDG CK G + +++ L   +      L++  Y+ L+DGLCK  ++  A 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  + A+ + Y+ +IHG + +   +KA  L  +M+   +  ++  +G LI G 
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +++  +   LL KM E  + P+  I + ++D   K+
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKS 481



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++ +CK   +  A+ L+++M  +G+  +   +  L  G  +  +++ A  L DEM R G
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT+ +DGLCK   + E+ ++ R +       +   Y+ LI G   +   E AL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D+  Y  +I GL N  ++D+A  L   M+E+ + PN I + T++   
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  + I +L K+ +    P+      ++D L K
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCK 515



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   ++ A+ L  EM+ +G+  +VV +  L  GL +  +V  A  +   M++ G
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+   YT  I G   N    +++ L   ++    ELDI  Y  LI GLC   +L+ A 
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAK 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  + + Y+ M+   +  G++ +A  +   + ++   PNVIT+  LI G 
Sbjct: 454 SLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGL 513

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + I   +KM++  + P+    + +VD L KN
Sbjct: 514 CKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKN 551



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+  NK  E AL L SEM +KG++ D+ ++  L  GL  +H+++ A  L  +M   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  +D   K+G + E++ + + +     + ++  Y  LIDGLCK+G ++ A+
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    L  +V  Y+ ++ GL  +G +++A  LF +M    ++ + + +  L+ G+
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGY 583

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++         L  KM +  +  D
Sbjct: 584 LKQGNLHDAFALKAKMIDSGLQLD 607



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+ ++  A+ +  ++L  G +P+V+ +  L  GL +   ++ A   F++M+  G+  + +
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            YT  +DGLCKNG + E+V+LF  +      LD   Y+ L+DG  K G L  A  L   +
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L  D+  Y+  I G  N   M +A ++F +M  + +AP+   +  LI  + ++   
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNL 659

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVD 214
            + I L  +M+   V+P  +      D
Sbjct: 660 EEAISLQDEMER--VLPSCTDSDTATD 684



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+V   N +   L +  ++  A  LF  M+  G   D  T+   IDG  K G + E  +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +R   C+ D+  Y+ LI+  CK GR+E A   F ++ R  ++A+VVT+S  +     
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G + +A  LF  M    +A N  T+  LI G  +       I LL +M  + V  +   
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 209 VSIVVDLLAK 218
            +++VD L K
Sbjct: 366 YTVLVDGLCK 375



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + P+    N + + L          +LF+++     A +  T+ I ID LCK G + E+ 
Sbjct: 153 VPPNTRTCNHILLRLARDRSGRLVRRLFEQLP----APNVFTFNIVIDFLCKEGELAEAR 208

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  ++ + C  D+  ++ LIDG  K G L+   +L   + R    ADVVTY+ +I+  
Sbjct: 209 SLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCF 268

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+M+ A+  F  M+   V  NV+TF T +  F +     + ++L  +M+ + +  + 
Sbjct: 269 CKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNE 328

Query: 207 SIVSIVVD 214
              + ++D
Sbjct: 329 FTYTCLID 336



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   I+ A++ +++M   G+ P+V  +  L  GL +   +  A +LF+EM   G
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   YT  +DG  K G + ++  L   +     +LD+  Y+C I G C    +  A 
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           E+F  +    +  D   Y+ +I      G +++A  L  +ME 
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++  ++ +ID LCK G L  A  LF  +     + DVVT++ +I G    G++D+   L 
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +M  +    +V+T+  LI+ F +             MK + VM +    S  VD   K 
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKE 306

Query: 220 EISLNSLPSFT 230
            +   ++  F 
Sbjct: 307 GLVREAMKLFA 317


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 119/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C    I  A +++  M + G+ P++  +NT+  G  +I  V++A +L+ EM  D
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ I IDGLCK   +V + +    +       +I  Y+CLIDG CK+G L  A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  ++ DV TYSI+I GL    +M++A  L  +M++    PN +T+ TLI G
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     K IE+  +M EK + P+    S ++D   K
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYCK   ++ AL LY EML  G+ P+VV    L  GL +  ++  A K   +M   G
Sbjct: 269 MMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   IDG CK G + E++ L   +   +   D+  YS LI GLC   R+E A 
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +   + + VTY+ +I G   +G M+KA ++   M E  + PN+ITF TLI G+
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
            +  +    + L  +M  K ++PD    + ++D   K+    N+  +F +H+  +E 
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG---NTKEAFRLHKEMQEA 502



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 106/193 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +  AL+L+SE+    I PDV  ++ L  GL  + ++E A  L  EM++ G
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   IDG CK G + +++E+   +     E +I  +S LIDG CK+G++E A+
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    L+ DVV Y+ +I G + DG   +A  L  +M+E  + PNV T   LI G 
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518

Query: 182 IRINEPSKVIELL 194
            +    S  I+L 
Sbjct: 519 CKDGRISDAIKLF 531



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 111/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G  K    +    +Y +M+++G  P+VV + TL  G        +AF+LFDEM   
Sbjct: 163 MVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +      YTI I GLC    I E+  +FRT+R      ++  Y+ ++DG CK   ++ A
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL+  +    L+ +VVT+ I+I GL    +M  A    +DM    V PN+  +  LI G
Sbjct: 283 LELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +    S+ + L  ++++  ++PD    SI++
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  E+  A     +M S G+ P++ ++N L  G  +   +  A  L  E+++ 
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY+I I GLC    + E+  L + ++      +   Y+ LIDG CK G +E A
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  +++T+S +I G    G+M+ A  L+ +M    + P+V+ +  LI G
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +     +   L  +M+E  + P+   +S ++D L K+
Sbjct: 483 HFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKD 521



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 3/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + +   +E AL +Y +M    + P +   N +  GL +  + +  +K++ +M   
Sbjct: 131 VLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVAR 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY   IDG C+ G  +++  LF  +   K    +  Y+ LI GLC   R+  A
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F ++    ++ ++ TY+ M+ G      + KA +L+ +M  + + PNV+TFG LI G
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +E     + L  M    V+P+  + + ++D   K
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCK 345



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 81/160 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C    +E A  L  EM  KG  P+ V +NTL  G  +   +E+A ++  +M   
Sbjct: 373 ILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEK 432

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T++  IDG CK G +  ++ L+  + I     D+ AY+ LIDG  K G  + A
Sbjct: 433 GIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEA 492

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
             L   +    L  +V T S +I GL  DG++  A  LFL
Sbjct: 493 FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
            N+ S + S    P+V     L I   E+  VE A  ++ +M    V    +   + +DG
Sbjct: 113 FNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDG 167

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L K G      +++  +       ++  Y  LIDG C+ G    A  LF  +    +   
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VV Y+I+I GL  + ++ +A  +F  M  + + PN+ T+ T++ G+ +I    K +EL  
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQ 287

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNE 220
           +M    ++P+     I++D L K +
Sbjct: 288 EMLGDGLLPNVVTFGILIDGLCKTD 312



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 89/208 (42%), Gaps = 14/208 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y     +  A N++ E+ SK    +++   ++     +  +  +A +LF +MQ D 
Sbjct: 672 LISMYSATGNVADAHNMFDEIPSK----NLISWTSVISAYVDNQRPNKALQLFRQMQMDD 727

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T T+ +      G +     +   +R    + D+   + LI+   K G +  A 
Sbjct: 728 VQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTAR 787

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHG 180
                LP      + VT+  ++    + G +++    F  M+E+ ++ P +  FG ++  
Sbjct: 788 RFSLVLP------NDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDL 841

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
             R    ++  E + KM    V P+A +
Sbjct: 842 LCRAGLLTEAYEFILKMP---VRPNAVV 866


>gi|414591640|tpg|DAA42211.1| TPA: hypothetical protein ZEAMMB73_215753 [Zea mays]
          Length = 299

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 122/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML +GIKP  ++++ +  GLF+  +   A   F EM   G
Sbjct: 60  LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG 119

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY I + GL KN    E++ LF+ LR +  +++I   + +IDG+ ++ R+E A 
Sbjct: 120 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 179

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV  VVTYSIMI  L  +G +++A D+F  M+     PN      ++   
Sbjct: 180 DLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVREL 239

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 240 LKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFS 275



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A N++   ++ G+ PD V+++ L  G   + ++E+A ++FD M   G+  +   Y   ++
Sbjct: 3   AQNIFDLKVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVN 62

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK G I E + LFR +     +     YS +IDGL ++GR   A   FH +    +  
Sbjct: 63  GYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAM 122

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ TY+I++ GL+ +   D+A  LF ++    V  N+IT  T+I G  +     +  +L 
Sbjct: 123 DICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLF 182

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
             +    ++P     SI++  L K
Sbjct: 183 ASISRSRLVPSVVTYSIMITNLIK 206



 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D   YS L+DG C  G++E AL +F ++    +  +VV Y  +++G    G++D+   LF
Sbjct: 18  DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 77

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINE--PSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +M +  + P+ I +  +I G  +     P+KV    H+M E  +  D    +IV+  L 
Sbjct: 78  REMLQRGIKPSTILYSIIIDGLFQAGRTVPAKV--KFHEMTESGIAMDICTYNIVLRGLF 135

Query: 218 KNE 220
           KN 
Sbjct: 136 KNR 138


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 116/213 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK    + AL LY +ML +G+ PDVV    L  GL +  +++ A  LF  M +  
Sbjct: 258 LMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFS 317

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   ID  CK G + E++ LF  L   +   D+  YS LI GLC   R E A 
Sbjct: 318 VTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAG 377

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  ++A+ VTY+ +I G   +G+MDKA ++   M EN V PNVITF TLI G+
Sbjct: 378 NIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGY 437

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +I      + +  +M  K++ PD    + ++D
Sbjct: 438 CKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMID 470



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 110/206 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K    E    +Y EM+S G+ P V+   TL  G      + RA ++FDEM+  G+     
Sbjct: 159 KTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVI 218

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            YTI I GLC +  I E+  + R +R +    ++  Y+ L+DG CK    + AL L+  +
Sbjct: 219 VYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDM 278

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               LV DVVT+ I+I GL   G+M  A +LF++M + +V PN+  + +LI  + ++ + 
Sbjct: 279 LGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDV 338

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVV 213
           S+ + L  +++   V PD    SI++
Sbjct: 339 SEAMALFLELERFEVSPDVFTYSILI 364



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 105/193 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK  ++  A+ L+ E+    + PDV  ++ L  GL  + + E A  +F++M ++G
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG 387

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A++ TY   IDG CK G + +++E+   +     E ++  +S LIDG CK   L+ A+
Sbjct: 388 ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAM 447

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +    L  DVVTY+ MI G    G M +A  L+ DM +N + PN  T   L+ G 
Sbjct: 448 GIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGL 507

Query: 182 IRINEPSKVIELL 194
            +  + S  +EL 
Sbjct: 508 CKDGKISDALELF 520



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 122/255 (47%), Gaps = 23/255 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C     E A N++ +M  +GI  + V +N+L  G  +  ++++A ++  +M  +
Sbjct: 362 ILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTEN 421

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T++  IDG CK   +  ++ ++  + I     D+  Y+ +IDG CK G ++ A
Sbjct: 422 GVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEA 481

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF----------LDMEENAVAP- 169
           L+L+  +    +  +  T S ++ GL  DG++  A +LF           +++     P 
Sbjct: 482 LKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPS 541

Query: 170 --NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI----------VSIVVDLLA 217
             N + +  LIHG  +  + SK ++L   M+   + PD  I          V  ++ +L 
Sbjct: 542 LTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYILMMLH 601

Query: 218 KNEISLNSLPSFTVH 232
            + +    +P+  VH
Sbjct: 602 ADMLKFGVIPNSAVH 616



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 3/212 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK + +E AL++Y ++   G    +   N L   L +  + E  +++++EM  +G++   
Sbjct: 126 CKMELVEEALSMYHKV---GAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSV 182

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+   IDG C+ G ++ + E+F  +R+      +  Y+ LI GLC   ++E A  +  +
Sbjct: 183 ITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRA 242

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  +V TY+ ++ G        +A  L+ DM    + P+V+TFG LI G  +  E
Sbjct: 243 MREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGE 302

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 L   M + +V P+ ++ + ++D   K
Sbjct: 303 MKAARNLFVNMIKFSVTPNIAVYNSLIDAYCK 334



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
           R+   +     Y  LI  LCK   +E AL ++H +   + +      +++++ L   G+ 
Sbjct: 107 RLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKVGAALTIQAC---NVLLYVLVKTGRF 163

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           +    ++ +M  N ++P+VITFGTLI G  R  +  +  E+  +M+ K ++P   + +I+
Sbjct: 164 ELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTIL 223

Query: 213 V-DLLAKNEI 221
           +  L + N+I
Sbjct: 224 IRGLCSDNKI 233


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 124/219 (56%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C + ++E A  L++EM S    PDVV +NTL   + +  +VE   KLF+ M+  
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T++  I GLC+ G + +++E+F ++    C+ +   Y+ LI GLC++ ++  A
Sbjct: 250 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIH 179
            ELF  + +  +  D V Y+ +I G    G MD+A  L+ +M   A + P ++TF TLI 
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 369

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF ++ +  +  EL+ +M  K +  D+    I++  L++
Sbjct: 370 GFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSR 408



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 112/205 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K + ++ A +L+ EM+  G  PD ++   L +GL +  +V+ A + F +M + G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y + + GLC +G + ++  LF  ++   C  D+  Y+ L+D +CK+ R+E   
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++     V +V+T+S +IHGL   G+++KA ++F  M E    PN  T+ TLI G 
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R  +  +  EL  KM +  + PDA
Sbjct: 301 CRAEKVIQARELFEKMTQACIPPDA 325



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  +++ +L + SEM+ +G  P +  +++L   L +  +V+ A  LFDEM R 
Sbjct: 85  ILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRG 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   +   I GLC+ G + ++ E F+ +    C+ ++  Y+ L+ GLC SG+LE A
Sbjct: 145 GHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       DVVTY+ ++  +    ++++   LF  M      PNVITF TLIHG
Sbjct: 205 NTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHG 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R  E  K +E+   M E    P+    + ++  L + E
Sbjct: 265 LCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAE 304



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+  E+E AL ++  ML  G KP+   + TL  GL    +V +A +LF++M +  
Sbjct: 261 LIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQAC 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D   Y   I G CK G + E+ +L+R +      +  I  ++ LIDG CK G+L  A
Sbjct: 321 IPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRA 380

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L AD  TY I+I GL    ++D+A +++  M E     + ++  + + G
Sbjct: 381 NELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGG 440

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +   +    ++   +P+     I+ + L K
Sbjct: 441 LCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 478



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 1/159 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI GYCK   ++ A  LY EM    G++P +V  NTL  G  ++ ++ RA +L  EM   
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 390

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+AAD+ TY I I GL +   + E++E+++ +R  K  LD  +    + GLCK+G ++ A
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
             +F +  +   V +  T+ I+   L   G+++ A  L 
Sbjct: 451 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 1/202 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           LI+G C+ +++  A  L+ +M    I PD V +N+L  G  +   ++ A KL+ EM    
Sbjct: 296 LISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGA 355

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T+   IDG CK G +  + EL   +       D   Y  LI GL ++ +L+ A
Sbjct: 356 GLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEA 415

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE++  +     + D V+    + GL   G +D+A+ +F    ++   PN  TF  L   
Sbjct: 416 LEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSES 475

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
            I++       +L+   K +++
Sbjct: 476 LIKLGRVEDAQKLMEPAKARDI 497



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+   +AA+  TY+  I  L K     ES ++   +    C  D+ A++ ++ G  +S  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +E A E++  +       D V+Y I+IHGL   G++D++  +  +M      P++  + +
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L+    +         L  +M      PD
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPD 149



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 35/232 (15%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  K I  +V  ++++   L +  + E ++K+ +EM   G   D   +   + G  ++  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE------------------- 122
           + ++ E+++ +     + D  +Y  LI GL K G+L+ +L+                   
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 123 ----------------LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
                           LF  + RG    D + +  +I GL   G++  A + F  M ++ 
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             PNV  +  L+HG     +  +   L  +MK  +  PD    + ++D + K
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 117/212 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK   +EGA  ++ EM+ +G+ PDVV +NTL  G  ++  +  +  +F EM + G
Sbjct: 87  MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 146

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  I   CK G + ++V L   +R     ++   ++ LIDG CK G L+ AL
Sbjct: 147 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDAL 206

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  +   VV Y+ +I+G    G+MD A +L  +ME   V P+V+T+ T+I G+
Sbjct: 207 LAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 266

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++       +L  KM +K V+PDA   S ++
Sbjct: 267 CKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   +  +L ++SEM  +G+ PDVV   +L     +   +E+A  L  +M+  G
Sbjct: 122 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 181

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G++ +++     +R    +  +  Y+ LI+G CK GR+++A 
Sbjct: 182 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 241

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  DVVTYS +I G    G +D A  L   M +  V P+ IT+ +LI G 
Sbjct: 242 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 301

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                 +   EL   M +  V PD    + ++D
Sbjct: 302 CEEKRLNDACELFENMLQLGVQPDEFTYTTLID 334



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 3/231 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++ A  L  EM +K +KPDVV ++T+  G  ++  ++ AF+L  +M + G
Sbjct: 227 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  I GLC+   + ++ ELF  +  L  + D   Y+ LIDG CK G +E AL
Sbjct: 287 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 346

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  ++ DVVTYS++I+GL    +  +AH L   +      P+ I +  L+   
Sbjct: 347 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCC 406

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
            +  E   V+ LL     K +M +A    +   +L +N     S+ S  +H
Sbjct: 407 SKA-EFKSVVALLKGFCMKGLMKEAD--KVYQSMLDRNWKLDGSVYSILIH 454



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 1/205 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    +E A+ +  +M   G  P+ V +NTL        +++ A ++   M+ +
Sbjct: 15  ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 74

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G A  +  T+   ++GLCK G +  + ++F  +       D+ +Y+ L+ G CK G L  
Sbjct: 75  GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 134

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           +L +F  + +  LV DVVT++ +IH     G +++A  L   M E  +  N +TF  LI 
Sbjct: 135 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 194

Query: 180 GFIRINEPSKVIELLHKMKEKNVMP 204
           GF +       +  + +M++  + P
Sbjct: 195 GFCKKGFLDDALLAVEEMRKCGIQP 219



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 103/198 (52%), Gaps = 1/198 (0%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+  G+ P+V  +N L   L    ++E A  +  +M+  G A +  TY   +   C+ G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 82  IVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
           +  +  +   +R     + ++  ++ +++GLCK+GR+E A ++F  + R  L  DVV+Y+
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            ++ G    G + ++  +F +M +  + P+V+TF +LIH   +     + + L+ +M+E+
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 201 NVMPDASIVSIVVDLLAK 218
            +  +    + ++D   K
Sbjct: 181 GLRMNEVTFTALIDGFCK 198



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 15/195 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ K +  A  L+  ML  G++PD   + TL  G  +   VE+A  L DEM R G
Sbjct: 297 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 356

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------------FRTLRILKCELDIQAYSC 106
           V  D  TY++ I+GL K+    E+  L               +  L +   + + ++   
Sbjct: 357 VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVA 416

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+ G C  G ++ A +++ S+       D   YSI+IHG    G + KA      M  + 
Sbjct: 417 LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSG 476

Query: 167 VAPNVITFGTLIHGF 181
            +PN  +  +L+ G 
Sbjct: 477 FSPNSTSTISLVRGL 491



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKLF--- 54
           LI+G+CK   +E AL+L+ EM+ KG+ PDVV ++ L  GL +  + + A    FKL+   
Sbjct: 332 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 391

Query: 55  ---DEMQRDGV-----AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
              D ++ D +      A+ ++    + G C  G + E+ ++++++     +LD   YS 
Sbjct: 392 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 451

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           LI G C+ G +  AL     + R     +  +   ++ GL+ +G + +A +   D+
Sbjct: 452 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 507



 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C    ++ A  +Y  ML +  K D  +++ L  G      V +A     +M R G
Sbjct: 417 LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSG 476

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
            + ++ +    + GL + G +VE+    + L +  C L D +A   LID   K G ++  
Sbjct: 477 FSPNSTSTISLVRGLFEEGMVVEADNAIQDL-LTCCPLADAEASKALIDLNRKEGNVDAL 535

Query: 121 LELFHSLPR 129
           +++   + R
Sbjct: 536 IDVLCGMAR 544



 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+C+   +  AL+ + +ML  G  P+     +L  GLFE   V  A     ++   
Sbjct: 451 ILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTC 510

Query: 61  GVAADTRTYTIFID 74
              AD       ID
Sbjct: 511 CPLADAEASKALID 524


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 123/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML +GIKP  ++++ +  GLF+  +   A   F EM   G
Sbjct: 588 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESG 647

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY I + GL KN    E++ LF+ LR +  +++I   + +IDG+ ++ R+E A 
Sbjct: 648 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 707

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV +VVTYSIMI  L  +G +++A D+F  M+     PN      ++   
Sbjct: 708 DLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVREL 767

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 768 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFS 803



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 116/216 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KPDVV + T+   L  I +++ A + F++M   
Sbjct: 412 VLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ 471

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D   Y   I G C +G ++++ EL   +      LDI  +S +I+ LCK GR+  A
Sbjct: 472 GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA 531

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L  D V YS+++ G    G+M+KA  +F  M    + PNV+ + TL++G
Sbjct: 532 QNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNG 591

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +I    + + L  +M ++ + P   + SI++D L
Sbjct: 592 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 627



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A     +M++K + P+   +N L  G     Q + A ++F EM+R  
Sbjct: 273 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 332

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T ++ +  LCK G I E+ ++F T+ +     D+ +Y+ +++G    G L    
Sbjct: 333 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 392

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  D  T++++I    N G +DKA  +F +M ++ V P+V+T+ T+I   
Sbjct: 393 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 452

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            RI +    +E  ++M ++ V PD
Sbjct: 453 CRIGKMDDAMEKFNQMIDQGVAPD 476



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L+ EM+ +GI PD+V +N++   L +   +++A     +M    
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G    G   E+V +F+ +R      D+   S L+  LCK G+++ A 
Sbjct: 298 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 357

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DV +Y+IM++G    G +    DLF  M  + +AP+  TF  LI  +
Sbjct: 358 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 417

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K + + ++M++  V PD      V+  L +
Sbjct: 418 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 454



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++   +    E AL  + ++L  G++ +++I N L  G  E  + + A   L      
Sbjct: 129 ILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPE 188

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y+I +  LC  G   ++ +L R +      C  ++ AY+ +IDG  K G +
Sbjct: 189 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 248

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LF  + +  +  D+VTY+ ++H L     MDKA      M    V PN  T+  L
Sbjct: 249 NKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNL 308

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+G+    +  + + +  +M+  +++PD   +S+++  L K
Sbjct: 309 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C +  +  A  L SE+++ G+  D+V  +++   L ++ +V  A  +FD     G
Sbjct: 483 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 542

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y++ +DG C  G + +++ +F  +     E ++  Y  L++G CK GR++  L
Sbjct: 543 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 602

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +    + YSI+I GL+  G+   A   F +M E+ +A ++ T+  ++ G 
Sbjct: 603 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 662

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     + I L  +++  NV  +   ++ ++D
Sbjct: 663 FKNRCFDEAIFLFKELRAMNVKINIITLNTMID 695



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY    + + A+ ++ EM    I PDVV  + L   L +  +++ A  +FD M   G
Sbjct: 308 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y I ++G    G +V+  +LF  +       D   ++ LI      G L+ A+
Sbjct: 368 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +    +  DVVTY  +I  L   G+MD A + F  M +  VAP+   +  LI GF
Sbjct: 428 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K  EL+ ++    +  D    S +++ L K
Sbjct: 488 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 524



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+ K  + AL+ L       G  PDV  ++ L   L +  +  +A  L   M   
Sbjct: 165 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 224

Query: 61  GV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   + +   Y   IDG  K G + ++ +LF+ +       D+  Y+ ++  LCK+  ++
Sbjct: 225 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 284

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++ +  TY+ +I+G  + GQ  +A  +F +M  +++ P+V+T   L+
Sbjct: 285 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 344

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  +  ++   M  K   PD    +I+++
Sbjct: 345 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 380



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 56/224 (25%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELF-------RTL 92
           E A  L DE+QR G     R    F+  L        C++G  + +V LF       +  
Sbjct: 59  EEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGP 117

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF---------------------------- 124
           R+L        Y+ L+D   ++ R E+AL  F                            
Sbjct: 118 RVL--SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRT 175

Query: 125 --------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV--APNVITF 174
                   H  P    V DV +YSI++  L + G+  +A DL   M E     +PNV+ +
Sbjct: 176 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAY 235

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+I GF +  + +K  +L  +M ++ + PD    + VV  L K
Sbjct: 236 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCK 279


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 123/216 (56%), Gaps = 2/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING+CK K+++ A  L   M+ KG  P+V     L  GL + ++V  A +L ++M   
Sbjct: 189 LVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTG 248

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY+  I+GLCK G + ++ ELF+ +    C  ++  ++ LIDGLCK+ R+E A
Sbjct: 249 GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEA 308

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV-APNVITFGTLIH 179
            +L+H +       D++TY+ +I GL    Q+D+A  LF  + E+ V A N +T+ TL H
Sbjct: 309 RQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFH 368

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVD 214
           G+  +   +    +   + +K   PD A+  S++++
Sbjct: 369 GYAALGRMADACRIFSMLVDKGFSPDLATYTSLILE 404



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 123/214 (57%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK   +  A  L  +M++ G  P+VV ++T+  GL +  QV+ A++LF  M+R 
Sbjct: 224 ILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERR 283

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+ I IDGLCK   I E+ +L+  +R   C  DI  Y+ LIDGLCKS +++ A
Sbjct: 284 NCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEA 343

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +LF ++P  GV  A+ VTYS + HG    G+M  A  +F  + +   +P++ T+ +LI 
Sbjct: 344 FQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLIL 403

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            + + +   +V+EL+ +M  K   P  + +S V+
Sbjct: 404 EYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 437



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 104/195 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   +E A  +   +++KG  P V++ N +  G  +   ++ A+KL + M   G   +  
Sbjct: 161 KYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVF 220

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+TI I GLCK   + E+ +L   +    C  ++  YS +I+GLCK G+++ A ELF  +
Sbjct: 221 TFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLM 280

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R     +VVT++I+I GL    ++++A  L+  M E   AP++IT+ +LI G  +  + 
Sbjct: 281 ERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQV 340

Query: 188 SKVIELLHKMKEKNV 202
            +  +L   + E  V
Sbjct: 341 DEAFQLFQTIPESGV 355



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 36/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF-DEMQR- 59
           L++  CK  + + A  +  EM+++G  PD V  +TL  GL +    E+AF++  D +QR 
Sbjct: 84  LVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRG 143

Query: 60  ----------------------------------DGVAADTRTYTIFIDGLCKNGYIVES 85
                                              G       + + I+G CK   +  +
Sbjct: 144 MGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSA 203

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +L   +    C  ++  ++ LI GLCK+ R+  A +L   +  G    +VVTYS +I+G
Sbjct: 204 YKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVING 263

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   GQ+D A++LF  ME     PNV+T   LI G  +     +  +L H+M+E    PD
Sbjct: 264 LCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD 323

Query: 206 ASIVSIVVDLLAKN 219
               + ++D L K+
Sbjct: 324 IITYNSLIDGLCKS 337



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 117/271 (43%), Gaps = 37/271 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+    +++ A+ L  EM S G + + V+H TL  GL +  +V  A + F  M +D
Sbjct: 14  ILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD 73

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D  TYT  +  LCK G   E+  + R +    C  D   +S LIDGLCK G  E A
Sbjct: 74  -CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQA 132

Query: 121 LELFHSLPR-------------------------------GVLVAD-----VVTYSIMIH 144
             +   + +                               GV++A      V+ ++++I+
Sbjct: 133 FRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVIN 192

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G      +D A+ L   M E    PNV TF  LI G  + N   +  +LL KM      P
Sbjct: 193 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSP 252

Query: 205 DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           +    S V++ L K     ++   F + ER+
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMERR 283



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK       + L  EM SKG  P V   + +  GLFE +  ERA +LFD M   G
Sbjct: 401 LILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGRLE 118
              D   Y + ++G+ +     +++ +   +   R  K      A   L++ LC+ GR +
Sbjct: 461 CTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTD 520

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L H +      A V +Y+ ++ GL    + D+A  +F  M     AP + T   +I
Sbjct: 521 DAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVI 580

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
                  +     EL+ +M +    PD
Sbjct: 581 SWLCSAAKVDDAYELVQRMSKLGCCPD 607



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 39/240 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK K IE A  LY  M   G  PD++ +N+L  GL +  QV+ AF+LF  +   
Sbjct: 294 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPES 353

Query: 61  GVAA------------------------------------DTRTYTIFIDGLCKNGYIVE 84
           GV+A                                    D  TYT  I   CK    VE
Sbjct: 354 GVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVE 413

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
            VEL   +        +   S ++ GL +    E A++LF S+       D + Y++++ 
Sbjct: 414 VVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVE 473

Query: 145 GLYNDGQMDKAHDLF---LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           G+    + +KA  +    +D  +    P+      L+    ++       +LLHKM E+ 
Sbjct: 474 GMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERG 533



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 37/226 (16%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+   +  L  G      ++ A +L +EM+ +G   +   +T  + GLC  G +VE++E 
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           FR +    C  D+  Y+ L+  LCK+G+ + A  +   +       D VT+S +I GL  
Sbjct: 67  FRAM-AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 149 DGQMDKAHDLFLDMEENAVA------------------------------------PNVI 172
            G  ++A  +  D+ +  +                                     P V+
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 185

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F  +I+GF +  +     +LL  M EK  +P+    +I++  L K
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCK 231



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 3/160 (1%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY I I G    G +  +++L   ++    E +   ++ L+ GLC +GR+  ALE F ++
Sbjct: 11  TYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 70

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+ ++H L   G+ D+A  +  +M     AP+ +TF TLI G  +    
Sbjct: 71  AKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSE 129

Query: 188 SKVIELLHKMKEKNVM-PDASIVSIVVDLLAK-NEISLNS 225
            +   +L  + ++ +   DA+  +I+  L  K N + L S
Sbjct: 130 EQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELAS 169



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C+    + A  L  +M  +G    V  +N L  GL  + + + A ++F+ M   G
Sbjct: 509 LVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAG 568

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T  + I  LC    + ++ EL + +  L C  DI+  + LI G CKSGR ++A 
Sbjct: 569 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 628

Query: 122 ELFHSLPRGVLVADVVTYSIM 142
           +L   +    L  +  T+ ++
Sbjct: 629 KLLEEMTEAGLEPNDTTHDLL 649


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 122/218 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G+C+   +   L LY EM  K   PDV++ N +   L +  +V+ A K+ +EM + 
Sbjct: 262 IVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKI 321

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I +DGLCK   + ++ ELF T+    C  DI +YS +++GLCK+ ++  A
Sbjct: 322 GAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDA 381

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    LV DVVT++I++ GL   G++D+A DL   M E+ V P+ +T  TL+HG
Sbjct: 382 RVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHG 441

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R     + + L   M EK  + D    +IV+  L +
Sbjct: 442 LCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCR 479



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 128/217 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+ ++ + A+ L+ ++++KG  PD V +N++ +GL     ++ A ++F +M   G
Sbjct: 193 LIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSG 252

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TY+I + G C+ G +   +EL+  +   +   D+   + +ID LCK+ +++ A 
Sbjct: 253 CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAH 312

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +   V DVVTY+I++ GL     +DKAH+LF  M +N  AP+++++  +++G 
Sbjct: 313 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N+      L  +M E+ ++PD    +I++D L K
Sbjct: 373 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCK 409



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  ++  AL +  EM  KG+ PDV  +  +   L    +V+ A +LF +M   G
Sbjct: 16  IISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +A+T  Y   I+GLCK+  I  + +L   +     E D   Y+ ++ GLC+ G++  A 
Sbjct: 76  CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAK 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF--LDMEENAVAPNVITFGTLIH 179
           + F S+P      DVV Y+ ++  LY +G++ +A  LF  +DM +  VAP++IT+ TLI 
Sbjct: 136 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLID 195

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
           GF R+ +  + ++L   +  K  MPD  +  SI++ L  K+ +
Sbjct: 196 GFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 238



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 37/255 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  C+  +++ A  L+ +M+ +G   + V +N L  GL +   +ERA+KL +EM   
Sbjct: 50  IIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASK 109

Query: 61  GVAADTRTYTIFIDGLC-----------------------------------KNGYIVES 85
           G   D  TY   + GLC                                   K G + E+
Sbjct: 110 GYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEA 169

Query: 86  VELFRTLRIL--KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
             LF+T+ +   K   D+  Y+ LIDG C+  + + A++LF  +     + D VTY+ ++
Sbjct: 170 WGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL 229

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            GL     MD+A ++F  M ++  APN  T+  ++ G  R+   ++ +EL  +M EK   
Sbjct: 230 LGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFS 289

Query: 204 PDASIVSIVVDLLAK 218
           PD  + + V+D+L K
Sbjct: 290 PDVLLCNAVIDMLCK 304



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  ++  A  L+  M+ + + PDVV  N L  GL +  +++ A  L D M   
Sbjct: 367 VVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEH 426

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  T T  + GLC++    E+V LF+ +       D+  ++ ++ GLC+ G+L  A
Sbjct: 427 NVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQA 486

Query: 121 LELFHSLPR--GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           L  F S+ +  G    DVVTY+ +++ L   G++D+A D F  M  +  AP+ + + TL+
Sbjct: 487 LLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLM 546

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
           +G  +     +   L   MKEK  + D
Sbjct: 547 NGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 2/207 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   ++ A  L+S M+  G  PD+V ++ +  GL + ++V  A  LFD M   
Sbjct: 332 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER 391

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T+ I +DGLCK G + E+ +L   +       D    + L+ GLC+  R + A
Sbjct: 392 KLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEA 451

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLI 178
           + LF  +     VADV+ ++I++ GL  +G++ +A   F  M   +   +P+V+T+ TL+
Sbjct: 452 VRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLV 511

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
           +  I      + ++   +M      PD
Sbjct: 512 NALIEAGRVDQAVDYFQQMTGSGCAPD 538



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK K+++ A  +  EM   G  PDVV +N L  GL + + V++A +LF  M  +G
Sbjct: 298 VIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 357

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  +Y++ ++GLCK   + ++  LF  +   K   D+  ++ L+DGLCK+G+L+ A 
Sbjct: 358 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 417

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    ++ D VT + ++HGL  D + D+A  LF  M E     +V+    ++ G 
Sbjct: 418 DLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGL 477

Query: 182 IRINEPSKVIELLHKM--KEKNVMPDASIVSIVVDLL 216
            R  + ++ +     M   +    PD    + +V+ L
Sbjct: 478 CREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNAL 514



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   G   D  TY+  I GLCK G + E++E+   +       D+  Y+ ++D LC++G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A ELFH +      A+ V Y+ +I+GL  D  +++A+ L  +M      P+ IT+ T
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++ G  R+ + S+  +    M  +   PD    + ++D L K
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK 162



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DVVTYS +I GL   G++ +A ++  +M E  V P+V T+  ++    R  +  +  EL 
Sbjct: 9   DVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELF 68

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNE 220
           HKM E+    +    + +++ L K+E
Sbjct: 69  HKMIERGCSANTVAYNALINGLCKDE 94


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 117/212 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK   +EGA  ++ EM+ +G+ PDVV +NTL  G  ++  +  +  +F EM + G
Sbjct: 229 MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  I   CK G + ++V L   +R     ++   ++ LIDG CK G L+ AL
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDAL 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  +   VV Y+ +I+G    G+MD A +L  +ME   V P+V+T+ T+I G+
Sbjct: 349 LAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++       +L  KM +K V+PDA   S ++
Sbjct: 409 CKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   +  +L ++SEM  +G+ PDVV   +L     +   +E+A  L  +M+  G
Sbjct: 264 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G++ +++     +R    +  +  Y+ LI+G CK GR+++A 
Sbjct: 324 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  DVVTYS +I G    G +D A  L   M +  V P+ IT+ +LI G 
Sbjct: 384 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                 +   EL   M +  V PD    + ++D
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 15/227 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++ A  L  EM +K +KPDVV ++T+  G  ++  ++ AF+L  +M + G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  I GLC+   + ++ ELF  +  L  + D   Y+ LIDG CK G +E AL
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG------ 175
            L   + R  ++ DVVTYS++I+GL    +  +AH L   +      P+ I +       
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCC 548

Query: 176 ---------TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                     L+ GF       +  ++   M ++N   D S+ SI++
Sbjct: 549 SKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 107/211 (50%), Gaps = 1/211 (0%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           +  +  A    S ML  G+ P+V  +N L   L    ++E A  +  +M+  G A +  T
Sbjct: 130 DASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVT 189

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           Y   +   C+ G +  +  +   +R     + ++  ++ +++GLCK+GR+E A ++F  +
Sbjct: 190 YNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEM 249

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R  L  DVV+Y+ ++ G    G + ++  +F +M +  + P+V+TF +LIH   +    
Sbjct: 250 VREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNL 309

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + + L+ +M+E+ +  +    + ++D   K
Sbjct: 310 EQAVALVAQMRERGLRMNEVTFTALIDGFCK 340



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    +E A+ +  +M   G  P+ V +NTL        +++ A ++   M+ +
Sbjct: 157 ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G A  +  T+   ++GLCK G +  + ++F  +       D+ +Y+ L+ G CK G L  
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           +L +F  + +  LV DVVT++ +IH     G +++A  L   M E  +  N +TF  LI 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           GF +       +  + +M++  + P 
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPS 362



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 15/196 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ K +  A  L+  ML  G++PD   + TL  G  +   VE+A  L DEM R G
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------------FRTLRILKCELDIQAYSC 106
           V  D  TY++ I+GL K+    E+  L               +  L +   + + ++   
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVA 558

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+ G C  G ++ A +++ S+       D   YSI+IHG    G + KA      M  + 
Sbjct: 559 LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSG 618

Query: 167 VAPNVITFGTLIHGFI 182
            +PN  +  +L+ G  
Sbjct: 619 FSPNSTSTISLVRGLF 634



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKLF--- 54
           LI+G+CK   +E AL+L+ EM+ KG+ PDVV ++ L  GL +  + + A    FKL+   
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 55  ---DEMQRDGV-----AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
              D ++ D +      A+ ++    + G C  G + E+ ++++++     +LD   YS 
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 593

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           LI G C+ G +  AL     + R     +  +   ++ GL+ +G + +A +   D+
Sbjct: 594 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 649



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C    ++ A  +Y  ML +  K D  +++ L  G      V +A     +M R G
Sbjct: 559 LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLID 109
            + ++ +    + GL + G +VE+    + L +  C L D +A   LID
Sbjct: 619 FSPNSTSTISLVRGLFEEGMVVEADNAIQDL-LTCCPLADAEASKALID 666



 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+C+   +  AL+ + +ML  G  P+     +L  GLFE   V  A     ++   
Sbjct: 593 ILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTC 652

Query: 61  GVAADTRTYTIFID 74
              AD       ID
Sbjct: 653 CPLADAEASKALID 666


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 121/220 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YC+ K ++  + L  E+  +G+  +   +NTL  G  E+  +  A  LF EM   G
Sbjct: 433 IIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG 492

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T  I + G C+N  + E++ELF  +++ K +LD  AY+ +I G+CK  +++ A 
Sbjct: 493 VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 552

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SLP   +  DV TY++MI G      +  A+ LF  M++N   P+  T+ TLI G 
Sbjct: 553 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 612

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++  E  K IEL+ +M+      DA  + +V DL+    +
Sbjct: 613 LKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRL 652



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF--------- 51
           ILI  +C   ++  +L+ + ++   G +PDVV  NTL  GL    ++  A          
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 52  -KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
             LFD+M   G+     T+   I+GLC  G ++E+  L   +      +D+  Y  +++G
Sbjct: 206 GSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 265

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +CK G  + AL L   +    +  DVV YS +I  L  DG    A  LF +M E  +APN
Sbjct: 266 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 325

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           V T+  +I GF      S    LL  M E+ + PD
Sbjct: 326 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 360



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C       A  L  +M+ + I PDV+  N L     +  ++  A KL DEM    
Sbjct: 332 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 391

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I G CK+    ++  +F     L    D+  ++ +ID  C++ R++  +
Sbjct: 392 IFPDTVTYNSMIYGFCKHNRFDDAKHMFD----LMASPDVVTFNTIIDVYCRAKRVDEGM 447

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  LVA+  TY+ +IHG      ++ A DLF +M  + V P+ IT   L++GF
Sbjct: 448 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 507

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
               +  + +EL   ++   +  D    +I++  + K    + + +   S  +H  + +V
Sbjct: 508 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 567

Query: 239 DESNV 243
              NV
Sbjct: 568 QTYNV 572



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  A  L ++M+ KG+  DVV + T+  G+ ++   + A  L  +M+   
Sbjct: 227 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  ID LCK+G+  ++  LF  +       ++  Y+C+IDG C  GR   A 
Sbjct: 287 IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 346

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  DV+T++ +I     +G++ +A  L  +M    + P+ +T+ ++I+GF
Sbjct: 347 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 406

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N       +   M      PD    + ++D+  +
Sbjct: 407 CKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCR 439



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 10/215 (4%)

Query: 2   LINGYCKNKEIEGAL----------NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF 51
           L++G C    I  AL          +L+ +M+  G+ P V+  NTL  GL    +V  A 
Sbjct: 182 LLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAA 241

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
            L ++M   G+  D  TY   ++G+CK G    ++ L   +     + D+  YS +ID L
Sbjct: 242 ALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL 301

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           CK G    A  LF  +    +  +V TY+ MI G  + G+   A  L  DM E  + P+V
Sbjct: 302 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDV 361

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +TF  LI   ++  +  +  +L  +M  + + PD 
Sbjct: 362 LTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDT 396



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K  ++  A  L  EML + I PD V +N++  G  + ++ + A  +FD M    
Sbjct: 367 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM---- 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID------------ 109
            + D  T+   ID  C+   + E ++L R +       +   Y+ LI             
Sbjct: 423 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 482

Query: 110 -----------------------GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                  G C++ +LE ALELF  +    +  D V Y+I+IHG+
Sbjct: 483 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 542

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A DLF  +  + V P+V T+  +I GF   +  S    L HKMK+    PD 
Sbjct: 543 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 602

Query: 207 SIVSIVV 213
           S  + ++
Sbjct: 603 STYNTLI 609



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+C+N+++E AL L+  +    I  D V +N +  G+ +  +V+ A+ LF  +   
Sbjct: 502 ILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH 561

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D +TY + I G C    I ++  LF  ++    E D   Y+ LI G  K+G ++ +
Sbjct: 562 GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 621

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +EL   +       D  T   M+  L  DG++DK+   F DM
Sbjct: 622 IELISEMRSNGFSGDAFTIK-MVADLITDGRLDKS---FSDM 659



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 111/221 (50%), Gaps = 12/221 (5%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEMQRDGVAADTRT 68
           K ++ A++ +  M+        V  N + IG+F  +++ + A  L+ +M+   +  +  +
Sbjct: 85  KSLDDAIDFFDYMVRSRPFYTAVDCNKV-IGVFVRMNRPDVAISLYRKMEIRRIPLNIYS 143

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-HSL 127
           + I I   C    +  S+  F  L  L  + D+  ++ L+ GLC   R+  AL LF + +
Sbjct: 144 FNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMV 203

Query: 128 PRGVLVAD---------VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             G L            V+T++ +I+GL  +G++ +A  L   M    +  +V+T+GT++
Sbjct: 204 ETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 263

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +G  ++ +    + LL KM+E ++ PD  I S ++D L K+
Sbjct: 264 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 304


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 121/220 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YC+ K ++  + L  E+  +G+  +   +NTL  G  E+  +  A  LF EM   G
Sbjct: 438 IIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG 497

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T  I + G C+N  + E++ELF  +++ K +LD  AY+ +I G+CK  +++ A 
Sbjct: 498 VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SLP   +  DV TY++MI G      +  A+ LF  M++N   P+  T+ TLI G 
Sbjct: 558 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 617

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++  E  K IEL+ +M+      DA  + +V DL+    +
Sbjct: 618 LKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRL 657



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-----------FEIHQVER 49
           ILI  +C   ++  +L+ + ++   G +PDVV  NTL  GL              + VE 
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 50  AF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            F     LFD+M   G+     T+   I+GLC  G ++E+  L   +      +D+  Y 
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            +++G+CK G  + AL L   +    +  DVV YS +I  L  DG    A  LF +M E 
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            +APNV T+  +I GF      S    LL  M E+ + PD
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C       A  L  +M+ + I PDV+  N L     +  ++  A KL DEM    
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I G CK+    ++  +F     L    D+  ++ +ID  C++ R++  +
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFD----LMASPDVVTFNTIIDVYCRAKRVDEGM 452

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  LVA+  TY+ +IHG      ++ A DLF +M  + V P+ IT   L++GF
Sbjct: 453 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 512

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
               +  + +EL   ++   +  D    +I++  + K    + + +   S  +H  + +V
Sbjct: 513 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 572

Query: 239 DESNV 243
              NV
Sbjct: 573 QTYNV 577



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  A  L ++M+ KG+  DVV + T+  G+ ++   + A  L  +M+   
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  ID LCK+G+  ++  LF  +       ++  Y+C+IDG C  GR   A 
Sbjct: 292 IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 351

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  DV+T++ +I     +G++ +A  L  +M    + P+ +T+ ++I+GF
Sbjct: 352 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N       +   M      PD    + ++D+  +
Sbjct: 412 CKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCR 444



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 94/192 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ L+ +M+  G+ P V+  NTL  GL    +V  A  L ++M   G+  D  TY   ++
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G+CK G    ++ L   +     + D+  YS +ID LCK G    A  LF  +    +  
Sbjct: 270 GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 329

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +V TY+ MI G  + G+   A  L  DM E  + P+V+TF  LI   ++  +  +  +L 
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389

Query: 195 HKMKEKNVMPDA 206
            +M  + + PD 
Sbjct: 390 DEMLHRCIFPDT 401



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K  ++  A  L  EML + I PD V +N++  G  + ++ + A  +FD M    
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM---- 427

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID------------ 109
            + D  T+   ID  C+   + E ++L R +       +   Y+ LI             
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487

Query: 110 -----------------------GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                  G C++ +LE ALELF  +    +  D V Y+I+IHG+
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 547

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A DLF  +  + V P+V T+  +I GF   +  S    L HKMK+    PD 
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 607

Query: 207 SIVSIVV 213
           S  + ++
Sbjct: 608 STYNTLI 614



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+C+N+++E AL L+  +    I  D V +N +  G+ +  +V+ A+ LF  +   
Sbjct: 507 ILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH 566

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D +TY + I G C    I ++  LF  ++    E D   Y+ LI G  K+G ++ +
Sbjct: 567 GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +EL   +       D  T   M+  L  DG++DK+   F DM
Sbjct: 627 IELISEMRSNGFSGDAFTIK-MVADLITDGRLDKS---FSDM 664



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++LY +M  + I  ++   N L     + H++  +   F ++ + G   D  T+   + 
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLH 184

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC    I E++ LF              Y      + ++G LE A+ LF  +    L  
Sbjct: 185 GLCLEDRISEALALF-------------GY------MVETGFLE-AVALFDQMVEIGLTP 224

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V+T++ +I+GL  +G++ +A  L   M    +  +V+T+GT+++G  ++ +    + LL
Sbjct: 225 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 284

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            KM+E ++ PD  I S ++D L K+
Sbjct: 285 SKMEETHIKPDVVIYSAIIDRLCKD 309


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 119/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C    I  A +++  M + G+ P++  +NT+  G  +I  V++A +L+ EM  D
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ I IDGLCK   +V + +    +       +I  Y+CLIDG CK+G L  A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  ++ DV TYSI+I GL    +M++A  L  +M++    PN +T+ TLI G
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     K IE+  +M EK + P+    S ++D   K
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYCK   ++ AL LY EML  G+ P+VV    L  GL +  ++  A K   +M   G
Sbjct: 269 MMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   IDG CK G + E++ L   +   +   D+  YS LI GLC   R+E A 
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +   + + VTY+ +I G   +G M+KA ++   M E  + PN+ITF TLI G+
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
            +  +    + L  +M  K ++PD    + ++D   K+    N+  +F +H+  +E 
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG---NTKEAFRLHKEMQEA 502



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 106/193 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +  AL+L+SE+    I PDV  ++ L  GL  + ++E A  L  EM++ G
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   IDG CK G + +++E+   +     E +I  +S LIDG CK+G++E A+
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    L+ DVV Y+ +I G + DG   +A  L  +M+E  + PNV T   LI G 
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518

Query: 182 IRINEPSKVIELL 194
            +    S  I+L 
Sbjct: 519 CKDGRISDAIKLF 531



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 112/217 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G  K    +    +Y +M+++G  P+VV + TL  G        +AF+LFDEM   
Sbjct: 163 MVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +      YTI I GLC    I E+  +FRT+R      ++  Y+ ++DG CK   ++ A
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL+  +    L+ +VVT+ I+I GL    +M  A    +DM    V PN+  +  LI G
Sbjct: 283 LELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           + +    S+ + L  ++++  ++PD    SI++  L 
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 13/225 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +E A+ + S+M  KGI+P+++  +TL  G  +  ++E A  L+ EM   G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  IDG  K+G   E+  L + ++      ++   SCLIDGLCK GR+  A+
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAI 528

Query: 122 ELF-------------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           +LF             + L R +   + V Y+ +I GL  DG++ KA   F DM  + + 
Sbjct: 529 KLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR 588

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           P+V T   +I G  R      V+ L   + +  ++P++S+  ++ 
Sbjct: 589 PDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLA 633



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 7/248 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  E+  A     +M S G+ P++ ++N L  G  +   +  A  L  E+++ 
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY+I I GLC    + E+  L + ++      +   Y+ LIDG CK G +E A
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  +++T+S +I G    G+M+ A  L+ +M    + P+V+ +  LI G
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-------EISLNSLPSFTVHE 233
             +     +   L  +M+E  + P+   +S ++D L K+       ++ L    + T   
Sbjct: 483 HFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542

Query: 234 RQEEVDES 241
           +  E+D S
Sbjct: 543 KTNELDRS 550



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 21/197 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  ++E A+ LY+EM+ KG+ PDVV +  L  G F+    + AF+L  EMQ  G
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAG 503

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-----------------RTLRILKCELDIQAY 104
           +  +  T +  IDGLCK+G I ++++LF                 R+L    C  +   Y
Sbjct: 504 LHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSL----CSPNHVMY 559

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI GLC  GR+  A + F  +    L  DV T  ++I G +    +     L  D+ +
Sbjct: 560 TALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILK 619

Query: 165 NAVAPNVITFGTLIHGF 181
             + PN   +  L  G+
Sbjct: 620 MGIIPNSSVYRVLAKGY 636



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 3/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + +   +E AL +Y +M    + P +   N +  GL +  + +  +K++ +M   
Sbjct: 131 VLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVAR 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY   IDG C+ G  +++  LF  +   K    +  Y+ LI GLC   R+  A
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F ++    ++ ++ TY+ M+ G      + KA +L+ +M  + + PNV+TFG LI G
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +E     + L  M    V+P+  + + ++D   K
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCK 345



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
            N+ S + S    P+V     L I   E+  VE A  ++ +M    V    +   + +DG
Sbjct: 113 FNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDG 167

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L K G      +++  +       ++  Y  LIDG C+ G    A  LF  +    +   
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VV Y+I+I GL  + ++ +A  +F  M  + + PN+ T+ T++ G+ +I    K +EL  
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQ 287

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNE 220
           +M    ++P+     I++D L K +
Sbjct: 288 EMLGDGLLPNVVTFGILIDGLCKTD 312



 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C +  I  A   +S+M   G++PDV     +  G F    +     L  ++ + G
Sbjct: 562 LIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMG 621

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE 87
           +  ++  Y +   G  ++GY+  ++ 
Sbjct: 622 IIPNSSVYRVLAKGYEESGYLKSALR 647


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 119/205 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I   CK K ++ AL+L++EM  KGI PD V +++L  GL +  ++  A++L D+M   
Sbjct: 315 IIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHAR 374

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TYT F+  LCKN  + ++V L + ++    + +I  Y+ LIDGLCK GR E A
Sbjct: 375 GQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENA 434

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L        V TY+IMI+GL  +G  D+A  L   ME+N   P+V+T+ T+I  
Sbjct: 435 QVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRA 494

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             + +E  K  +LL +M  + ++ +
Sbjct: 495 LFKNDENHKAEKLLREMIARGLLEE 519



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 106/204 (51%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++LY  +    I P +V  NT+      + +++ AF +  ++ + G   DT T T  I 
Sbjct: 67  AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIK 126

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC NG + E++     +      L+  +Y  LI+GLCK G    AL++   +   ++  
Sbjct: 127 GLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNT 186

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +VV YS +I  L  +  + +A++L+  M    V+P+V+TF  LI+GF  + +  +   L 
Sbjct: 187 NVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLF 246

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
           H+M   N+ PD    +I+VD L K
Sbjct: 247 HEMVLTNINPDVCTFNILVDALCK 270



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 17/199 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVI-----------------HNTLFIGLFEI 44
           LI G+C   + + A  L+ EM+   I PDV                    N L + + E+
Sbjct: 229 LIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEV 288

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           +QV +A  +F+ + +  V  D  +YTI I  LCK   + E++ LF  +R      D   Y
Sbjct: 289 NQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTY 348

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           S LIDGLCKS R+  A EL   +      ADV+TY+  +H L  + Q+DKA  L   +++
Sbjct: 349 SSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKD 408

Query: 165 NAVAPNVITFGTLIHGFIR 183
             + PN+ T+  LI G  +
Sbjct: 409 QGIQPNINTYNILIDGLCK 427



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 52/270 (19%)

Query: 1   ILINGYCKNKEIEGALN-----------------------------------LYSEMLSK 25
           ILING CK  E   AL                                    LYS+M+ K
Sbjct: 158 ILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVK 217

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
            + PDVV  + L  G   + Q + AF LF EM    +  D  T+ I +D LCK G   E+
Sbjct: 218 KVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKET 277

Query: 86  -----------------VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
                              +F  +   +   D+ +Y+ +I  LCK   ++ AL LF+ + 
Sbjct: 278 KNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMR 337

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +  D VTYS +I GL    ++  A +L   M       +VIT+ + +H   + ++  
Sbjct: 338 CKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVD 397

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           K + L+ K+K++ + P+ +  +I++D L K
Sbjct: 398 KAVALVKKIKDQGIQPNINTYNILIDGLCK 427



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 17/234 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN YC   E++ A ++ +++L  G  PD +   TL  GL    +V  A    D +   G
Sbjct: 89  VINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARG 148

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +Y I I+GLCK G    ++++ R +       ++  YS +ID LCK   +  A 
Sbjct: 149 FRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAY 208

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    +  DVVT+S +I+G    GQ  +A  LF +M    + P+V TF  L+   
Sbjct: 209 ELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDAL 268

Query: 182 IR-----------------INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +                 +N+ +K   + + + ++ V PD    +I++  L K
Sbjct: 269 CKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCK 322



 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGR--LEIALELFHSLPRGVLVADVVTYSIMIH 144
             +R LR +     I  ++ ++  L KS      IA+ L+H L    +   +VT++ +I+
Sbjct: 33  SFYRMLR-MNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVTFNTVIN 91

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
              + G+MD A  +   + +    P+ IT  TLI G   +N   KV E LH
Sbjct: 92  CYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLC-LN--GKVHEALH 139


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 117/212 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK   +EGA  ++ EM+ +G+ PDVV +NTL  G  ++  +  +  +F EM + G
Sbjct: 229 MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  I   CK G + ++V L   +R     ++   ++ LIDG CK G L+ AL
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDAL 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  +   VV Y+ +I+G    G+MD A +L  +ME   V P+V+T+ T+I G+
Sbjct: 349 LAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++       +L  KM +K V+PDA   S ++
Sbjct: 409 CKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   +  +L ++SEM  +G+ PDVV   +L     +   +E+A  L  +M+  G
Sbjct: 264 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G++ +++     +R    +  +  Y+ LI+G CK GR+++A 
Sbjct: 324 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  DVVTYS +I G    G +D A  L   M +  V P+ IT+ +LI G 
Sbjct: 384 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                 +   EL   M +  V PD    + ++D
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 15/227 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++ A  L  EM +K +KPDVV ++T+  G  ++  ++ AF+L  +M + G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  I GLC+   + ++ ELF  +  L  + D   Y+ LIDG CK G +E AL
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG------ 175
            L   + R  ++ DVVTYS++I+GL    +  +AH L   +      P+ I +       
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCC 548

Query: 176 ---------TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                     L+ GF       +  ++   M ++N   D S+ SI++
Sbjct: 549 SKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 107/211 (50%), Gaps = 1/211 (0%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           +  +  A    S ML  G+ P+V  +N L   L    ++E A  +  +M+  G A +  T
Sbjct: 130 DASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVT 189

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           Y   +   C+ G +  +  +   +R     + ++  ++ +++GLCK+GR+E A ++F  +
Sbjct: 190 YNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEM 249

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R  L  DVV+Y+ ++ G    G + ++  +F +M +  + P+V+TF +LIH   +    
Sbjct: 250 VREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNL 309

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + + L+ +M+E+ +  +    + ++D   K
Sbjct: 310 EQAVALVAQMRERGLRMNEVTFTALIDGFCK 340



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    +E A+ +  +M   G  P+ V +NTL        +++ A ++   M+ +
Sbjct: 157 ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G A  +  T+   ++GLCK G +  + ++F  +       D+ +Y+ L+ G CK G L  
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           +L +F  + +  LV DVVT++ +IH     G +++A  L   M E  +  N +TF  LI 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           GF +       +  + +M++  + P 
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPS 362



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 15/195 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ K +  A  L+  ML  G++PD   + TL  G  +   VE+A  L DEM R G
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------------FRTLRILKCELDIQAYSC 106
           V  D  TY++ I+GL K+    E+  L               +  L +   + + ++   
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVA 558

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+ G C  G ++ A +++ S+       D   YSI+IHG    G + KA      M  + 
Sbjct: 559 LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSG 618

Query: 167 VAPNVITFGTLIHGF 181
            +PN  +  +L+ G 
Sbjct: 619 FSPNSTSTISLVRGL 633



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKLF--- 54
           LI+G+CK   +E AL+L+ EM+ KG+ PDVV ++ L  GL +  + + A    FKL+   
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 55  ---DEMQRDGV-----AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
              D ++ D +      A+ ++    + G C  G + E+ ++++++     +LD   YS 
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 593

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           LI G C+ G +  AL     + R     +  +   ++ GL+ +G + +A +   D+
Sbjct: 594 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 649



 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C    ++ A  +Y  ML +  K D  +++ L  G      V +A     +M R G
Sbjct: 559 LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
            + ++ +    + GL + G +VE+    + L +  C L D +A   LID   K G ++  
Sbjct: 619 FSPNSTSTISLVRGLFEEGMVVEADNAIQDL-LTCCPLADAEASKALIDLNRKEGNVDAL 677

Query: 121 LELFHSLPR 129
           +++   + R
Sbjct: 678 IDVLCGMAR 686



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+C+   +  AL+ + +ML  G  P+     +L  GLFE   V  A     ++   
Sbjct: 593 ILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTC 652

Query: 61  GVAADTRTYTIFID 74
              AD       ID
Sbjct: 653 CPLADAEASKALID 666


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 126/218 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK K +  A +LYSEM+S+GI PDVV ++ L  G F + +++ A  LF++M  + 
Sbjct: 184 IIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILEN 243

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +DG CK+G + E   +F  +     + ++  Y  L+DG C   ++  A 
Sbjct: 244 IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAN 303

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++ +G +  D  +Y+IMI+G     ++D+A +LF  M    + PNV+T+ +LI G 
Sbjct: 304 SIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGL 363

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + S  ++L+ +M ++ V PD    S ++D L KN
Sbjct: 364 CKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKN 401



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 129/230 (56%), Gaps = 11/230 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK+ +++    +++ M+ +GIKP+VV + +L  G   + QV +A  +F+ M + 
Sbjct: 253 ILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQG 312

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  DT++Y I I+G CK   + E++ LF+ +       ++  Y+ LIDGLCKSG++  A
Sbjct: 313 GVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYA 372

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKA--------HDLFLDMEENAVAPNV 171
           L+L   +  RGV   D++TYS ++  L  + Q+DKA          +F D+       +V
Sbjct: 373 LKLVDEMHDRGV-PPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDV 431

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNE 220
             +  +I GF      ++ + LL KM++   +PDA    I++  L  K+E
Sbjct: 432 YAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDE 481



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 122/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   AL L   +  K ++P+VV++NT+   + ++  V  AF L+ EM  +G
Sbjct: 149 LINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEG 208

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I G    G + ++++LF  + +   + D+  ++ L+DG CK G+++   
Sbjct: 209 ISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGK 268

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  +VVTY  ++ G     Q++KA+ +F  M +  V P+  ++  +I+GF
Sbjct: 269 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGF 328

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I +  + + L  KM  KN++P+    + ++D L K+
Sbjct: 329 CKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKS 366



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 8/170 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K+++ A+NL+ +M  K I P+VV + +L  GL +  ++  A KL DEM   
Sbjct: 323 IMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDR 382

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL--------FRTLRILKCELDIQAYSCLIDGLC 112
           GV  D  TY+  +D LCKN  + +++ L        F  L +    LD+ AY+ +I G C
Sbjct: 383 GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFC 442

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             G    AL L   +     + D  TY I+I  L+   + D A  L  +M
Sbjct: 443 VKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREM 492



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 113/231 (48%), Gaps = 13/231 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVI-------------HNTLFIGLFEIHQV 47
           ILIN + +  +   + ++++ +L KG  P+V+              + TL  GL ++ Q 
Sbjct: 100 ILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQA 159

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
             A +L   +    V  +   Y   ID +CK   + E+ +L+  +       D+  YS L
Sbjct: 160 RAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSAL 219

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           I G    G+L+ A++LF+ +    +  DV T++I++ G   DG+M +   +F  M +  +
Sbjct: 220 ISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGI 279

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            PNV+T+ +L+ G+  + + +K   + + M +  V PD    +I+++   K
Sbjct: 280 KPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCK 330



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 22/205 (10%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+ +M  KGI  ++V  N L     ++ Q   +F +F  + + G   +  T T  I 
Sbjct: 79  AISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIK 138

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC              L++        +Y  LI+GLCK G+   AL+L   +   ++  
Sbjct: 139 GLC--------------LKV--------SYGTLINGLCKVGQARAALQLLRRVDGKLVQP 176

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +VV Y+ +I  +     +++A DL+ +M    ++P+V+T+  LI GF  + +    I+L 
Sbjct: 177 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLF 236

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
           +KM  +N+ PD    +I+VD   K+
Sbjct: 237 NKMILENIKPDVYTFNILVDGFCKD 261



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           ++  L K      A+ L   +    + +++VT +I+I+     GQ   +  +F ++ +  
Sbjct: 66  ILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKG 125

Query: 167 VAPNVITF-------------GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             PNVIT              GTLI+G  ++ +    ++LL ++  K V P+  + + ++
Sbjct: 126 YDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTII 185

Query: 214 DLLAK 218
           D + K
Sbjct: 186 DSMCK 190


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 119/204 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK+ + + A+ ++ + L KG++P +V++NTL  GL +   +  A +L +EM  +G
Sbjct: 336 LINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + I+GLCK G + ++  L        C  DI  Y+ LIDG CK  +L+ A 
Sbjct: 396 CLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSAT 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ + +    +  DV+TY+ +++GL   G+ ++  ++F  MEE    PN+IT+  ++   
Sbjct: 456 EMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  + ++ ++LL +MK K + PD
Sbjct: 516 CKAKKVNEAVDLLGEMKSKGLKPD 539



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK   +  A +L  + ++KG  PD+  +NTL  G  +  +++ A ++ + M   
Sbjct: 405 LVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQ 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   ++GLCK G   E +E+F+ +    C  +I  Y+ ++D LCK+ ++  A
Sbjct: 465 GMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEA 524

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIH 179
           ++L   +    L  DVV++  +  G    G +D A+ LF  ME+   V     T+  ++ 
Sbjct: 525 VDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVS 584

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F      +  ++L   MK     PD     +V+D   K
Sbjct: 585 AFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCK 623



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 49/270 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  +++ A  + + M S+G+ PDV+ +NTL  GL +  + E   ++F  M+  G
Sbjct: 441 LIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKG 500

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I +D LCK   + E+V+L   ++    + D+ ++  L  G CK G ++ A 
Sbjct: 501 CTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAY 560

Query: 122 ELFHSLPRGVLVA------------------------------------DVVTYSIMIHG 145
           +LF  + +   V                                     D  TY ++I G
Sbjct: 561 QLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDG 620

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP- 204
               G + + +   L+  E    P++ TFG +++     ++  + + ++H M +K ++P 
Sbjct: 621 FCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPE 680

Query: 205 --------DASIVS----IVVDLLAKNEIS 222
                   D  +V+    +V DLL K  I+
Sbjct: 681 TVNTIFEADKKVVAAPKILVEDLLKKGHIA 710



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           +  Y +  +++ A++ +  M      P V  HN +   L E     +A K++  M+  GV
Sbjct: 83  MKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGV 142

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
            +D  TYTI I   CK      ++ L R +  L C+ +  AY  ++ GL  SG  + A E
Sbjct: 143 QSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARE 202

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF  +    L  DVV ++ ++H L   G + ++  L   + +  V PN+ TF   + G  
Sbjct: 203 LFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLC 262

Query: 183 RINEPSKVI---------ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           R     + +         E L KM      PD    + ++D   K
Sbjct: 263 REGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCK 307



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 9/244 (3%)

Query: 1   ILINGYCK---------NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF 51
           I + G C+         N  +  A     +M++ G +PD + +N++  G  +   V+ A 
Sbjct: 256 IFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDAN 315

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           ++  +    G   D  TY   I+G CK+G    ++ +F+          I  Y+ LI GL
Sbjct: 316 RVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGL 375

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            + G +  AL+L + +     + ++ TY+++I+GL   G +  A  L  D       P++
Sbjct: 376 SQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDI 435

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231
            T+ TLI G+ +  +     E++++M  + + PD    + +++ L K   S   +  F  
Sbjct: 436 FTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKA 495

Query: 232 HERQ 235
            E +
Sbjct: 496 MEEK 499



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 11/236 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I  +CK      AL L   M   G   + V + T+  GL++  + + A +LFDEM   
Sbjct: 151 IRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLAR 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +  D   +   +  LCK G + ES  L  + L+   C  ++  ++  + GLC+ G L+ 
Sbjct: 211 CLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCP-NLFTFNIFVQGLCREGALDR 269

Query: 120 AL---------ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           A+         E    +  G    D +TY+ +I G    G +  A+ +  D       P+
Sbjct: 270 AVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPD 329

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             T+ +LI+GF +  +P + + +      K + P   + + ++  L++  + L +L
Sbjct: 330 EFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPAL 385



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 12/234 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK--------- 52
           L++  CK   +  +  L  ++L +G+ P++   N    GL     ++RA +         
Sbjct: 222 LVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEE 281

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
              +M   G   D  TY   IDG CK G + ++  + +       + D   Y  LI+G C
Sbjct: 282 YLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFC 341

Query: 113 KSGRLEIALELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           K G  + A+ +F   L +G L   +V Y+ +I GL   G +  A  L  +M EN   PN+
Sbjct: 342 KDGDPDRAMAVFKDGLGKG-LRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNI 400

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            T+  +I+G  ++   S    L+     K   PD    + ++D   K ++ L+S
Sbjct: 401 WTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCK-QLKLDS 453



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 65/148 (43%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           + G + E+V+ F  +    C+  + +++ +++ L + G    A +++  +    + +DV 
Sbjct: 88  RKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVY 147

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+I I       +   A  L  +M E     N + + T++ G     E     EL  +M
Sbjct: 148 TYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEM 207

Query: 198 KEKNVMPDASIVSIVVDLLAKNEISLNS 225
             + + PD    + +V +L K  +   S
Sbjct: 208 LARCLCPDVVAFNKLVHVLCKKGLVFES 235


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 123/216 (56%), Gaps = 2/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING+CK K+++ A  L   M+ KG  P+V     L  GL + ++V  A +L ++M   
Sbjct: 237 LVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMG 296

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY+  I+GLCK G + ++ ELF+ +    C  ++  ++ LIDGLCK+ R+E A
Sbjct: 297 GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEA 356

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV-APNVITFGTLIH 179
            +L+H +       D++TY+ +I GL    Q+D+A  LF  + E+ V A N +T+ TL H
Sbjct: 357 RQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFH 416

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVD 214
           G+  +   +    +   + +K   PD A+  S++++
Sbjct: 417 GYAALGRMADACRIFSMLVDKGFSPDLATYTSLILE 452



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 122/214 (57%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK   +  A  L  +M+  G  P+VV ++T+  GL +  QV+ A++LF  M+R 
Sbjct: 272 ILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERR 331

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+ I IDGLCK   I E+ +L+  +R   C  DI  Y+ LIDGLCKS +++ A
Sbjct: 332 NCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEA 391

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +LF ++P  GV  A+ VTYS + HG    G+M  A  +F  + +   +P++ T+ +LI 
Sbjct: 392 FQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLIL 451

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            + + +   +V+EL+ +M  K   P  + +S V+
Sbjct: 452 EYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 485



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 105/195 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   +E A  +   +++KG  P V++ N +  G  +   ++ A+KL + M   G   +  
Sbjct: 209 KYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVF 268

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+TI I GLCK   + E+ +L   + +  C  ++  YS +I+GLCK G+++ A ELF  +
Sbjct: 269 TFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLM 328

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R     +VVT++I+I GL    ++++A  L+  M E   AP++IT+ +LI G  +  + 
Sbjct: 329 ERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQV 388

Query: 188 SKVIELLHKMKEKNV 202
            +  +L   + E  V
Sbjct: 389 DEAFQLFQTIPESGV 403



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 36/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF-DEMQR- 59
           L++  CK  + + A  +  EM+++G  PD V  +TL  GL +    E+AF++  D +QR 
Sbjct: 132 LVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRG 191

Query: 60  ----------------------------------DGVAADTRTYTIFIDGLCKNGYIVES 85
                                              G       + + I+G CK   +  +
Sbjct: 192 MGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSA 251

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +L   +    C  ++  ++ LI GLCK+ R+  A +L   +  G    +VVTYS +I+G
Sbjct: 252 YKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVING 311

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   GQ+D A++LF  ME     PNV+T   LI G  +     +  +L H+M+E    PD
Sbjct: 312 LCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD 371

Query: 206 ASIVSIVVDLLAKN 219
               + ++D L K+
Sbjct: 372 IITYNSLIDGLCKS 385



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 117/271 (43%), Gaps = 37/271 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+    +++ A+ L  EM S G + + V+H TL  GL +  +V  A + F  M +D
Sbjct: 62  ILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD 121

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D  TYT  +  LCK G   E+  + R +    C  D   +S LIDGLCK G  E A
Sbjct: 122 -CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQA 180

Query: 121 LELFHSLPR-------------------------------GVLVAD-----VVTYSIMIH 144
             +   + +                               GV++A      V+ ++++I+
Sbjct: 181 FRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVIN 240

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G      +D A+ L   M E    PNV TF  LI G  + N   +  +LL KM      P
Sbjct: 241 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSP 300

Query: 205 DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           +    S V++ L K     ++   F + ER+
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMERR 331



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 37/248 (14%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+    + AL L+   +++   P+   +  L  G      ++ A +L +EM+  G   + 
Sbjct: 33  CRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNA 92

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +T  + GLC  G +VE++E FR +    C  D+  Y+ L+  LCK+G+ + A  +   
Sbjct: 93  VVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGKFDEAQGMLRE 151

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA------------------ 168
           +       D VT+S +I GL   G  ++A  +  D+ +  +                   
Sbjct: 152 MVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN 211

Query: 169 ------------------PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
                             P V+ F  +I+GF +  +     +LL  M EK  +P+    +
Sbjct: 212 SVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFT 271

Query: 211 IVVDLLAK 218
           I++  L K
Sbjct: 272 ILITGLCK 279



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK       + L  EM SKG  P V   + +  GLFE +  ERA +LFD M   G
Sbjct: 449 LILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG 508

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGRLE 118
              D   Y + ++G+ +     +++ +   +   R  K      A   L++ LC+ G+ +
Sbjct: 509 CTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTD 568

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L H +      A V +Y+ ++ GL    + D+A  +F  M     AP + T   +I
Sbjct: 569 DAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVI 628

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
                  +     EL+ +M +    PD
Sbjct: 629 SWLCSAAKVDDAYELVQRMSKLGCCPD 655



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 39/240 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK K IE A  LY  M   G  PD++ +N+L  GL +  QV+ AF+LF  +   
Sbjct: 342 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPES 401

Query: 61  GVAA------------------------------------DTRTYTIFIDGLCKNGYIVE 84
           GV+A                                    D  TYT  I   CK    VE
Sbjct: 402 GVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVE 461

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
            VEL   +        +   S ++ GL +    E A++LF S+       D + Y++++ 
Sbjct: 462 VVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVE 521

Query: 145 GLYNDGQMDKAHDLF---LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           G+    + DKA  +    +D  +    P+      L+    ++ +     +LLHKM E+ 
Sbjct: 522 GMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERG 581



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L  +++ + A  LF          +  TY I I G    G +  +++L   ++    E +
Sbjct: 32  LCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGN 91

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
              ++ L+ GLC +GR+  ALE F ++ +     DV+TY+ ++H L   G+ D+A  +  
Sbjct: 92  AVVHTTLMKGLCDAGRVVEALEHFRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLR 150

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM-PDASIVSIVVDLLAK- 218
           +M     AP+ +TF TLI G  +     +   +L  + ++ +   DA+  +I+  L  K 
Sbjct: 151 EMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKY 210

Query: 219 NEISLNS 225
           N + L S
Sbjct: 211 NSVELAS 217



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 1/166 (0%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           LF +  R  V  +  +    +D LC+     E++ LFR      C  +   Y  LI G  
Sbjct: 9   LFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFS 68

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
            +G L+IA++L   +       + V ++ ++ GL + G++ +A + F  M ++  AP+V+
Sbjct: 69  SAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPDVM 127

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T+  L+H   +  +  +   +L +M  +   PD    S ++D L K
Sbjct: 128 TYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C+  + + A  L  +M  +G    V  +N L  GL  + + + A ++F+ M   G
Sbjct: 557 LVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAG 616

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T  + I  LC    + ++ EL + +  L C  DI+  + LI G CKSGR ++A 
Sbjct: 617 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 676

Query: 122 ELFHSLPRGVLVADVVTYSIM 142
           +L   +    L  +  T+ ++
Sbjct: 677 KLLEEMTEAGLEPNDTTHDLL 697


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 121/220 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YC+ K ++  + L  E+  +G+  +   +NTL  G  E+  +  A  LF EM   G
Sbjct: 222 IIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T  I + G C+N  + E++ELF  +++ K +LD  AY+ +I G+CK  +++ A 
Sbjct: 282 VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SLP   +  DV TY++MI G      +  A+ LF  M++N   P+  T+ TLI G 
Sbjct: 342 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++  E  K IEL+ +M+      DA  + +V DL+    +
Sbjct: 402 LKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRL 441



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C       A  L  +M+ + I PDV+  N L     +  ++  A KL DEM    
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I G CK+    ++  +F     L    D+  ++ +ID  C++ R++  +
Sbjct: 181 IFPDTVTYNSMIYGFCKHNRFDDAKHMFD----LMASPDVVTFNTIIDVYCRAKRVDEGM 236

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  LVA+  TY+ +IHG      ++ A DLF +M  + V P+ IT   L++GF
Sbjct: 237 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 296

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
               +  + +EL   ++   +  D    +I++  + K    + + +   S  +H  + +V
Sbjct: 297 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 356

Query: 239 DESNV 243
              NV
Sbjct: 357 QTYNV 361



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  A  L ++M+ KG+  DVV + T+  G+ ++   + A  L  +M+   
Sbjct: 16  LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  ID LCK+G+  ++  LF  +       ++  Y+C+IDG C  GR   A 
Sbjct: 76  IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  DV+T++ +I     +G++ +A  L  +M    + P+ +T+ ++I+GF
Sbjct: 136 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N       +   M      PD    + ++D+  +
Sbjct: 196 CKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCR 228



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K  ++  A  L  EML + I PD V +N++  G  + ++ + A  +FD M    
Sbjct: 156 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM---- 211

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID------------ 109
            + D  T+   ID  C+   + E ++L R +       +   Y+ LI             
Sbjct: 212 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 271

Query: 110 -----------------------GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                  G C++ +LE ALELF  +    +  D V Y+I+IHG+
Sbjct: 272 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 331

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A DLF  +  + V P+V T+  +I GF   +  S    L HKMK+    PD 
Sbjct: 332 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 391

Query: 207 SIVSIVV 213
           S  + ++
Sbjct: 392 STYNTLI 398



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+  G+ P V+  NTL  GL    +V  A  L ++M   G+  D  TY   ++G+CK G 
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
              ++ L   +     + D+  YS +ID LCK G    A  LF  +    +  +V TY+ 
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           MI G  + G+   A  L  DM E  + P+V+TF  LI   ++  +  +  +L  +M  + 
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 202 VMPDA 206
           + PD 
Sbjct: 181 IFPDT 185



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 4/162 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+C+N+++E AL L+  +    I  D V +N +  G+ +  +V+ A+ LF  +   
Sbjct: 291 ILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH 350

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D +TY + I G C    I ++  LF  ++    E D   Y+ LI G  K+G ++ +
Sbjct: 351 GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 410

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +EL   +       D  T   M+  L  DG++DK+   F DM
Sbjct: 411 IELISEMRSNGFSGDAFTIK-MVADLITDGRLDKS---FSDM 448



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 52/84 (61%)

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V+T++ +I+GL  +G++ +A  L   M    +  +V+T+GT+++G  ++ +    + LL 
Sbjct: 10  VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLS 69

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
           KM+E ++ PD  I S ++D L K+
Sbjct: 70  KMEETHIKPDVVIYSAIIDRLCKD 93


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 110/197 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K  + A+NL+ EM  + + PDVV +N+L  GL +  ++  A KL DEM   
Sbjct: 210 IMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDR 269

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+  +D LCKN  + +++ L + L+      ++  Y+ LIDGLCK GRLE A
Sbjct: 270 GQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDA 329

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L        V TY++MIHG  N G  D+A  L   M++N+  PN +T+  +I  
Sbjct: 330 HNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRS 389

Query: 181 FIRINEPSKVIELLHKM 197
               +E  K   LL +M
Sbjct: 390 LFDNDENDKAENLLREM 406



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 116/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   E+  A  ++S M  +G+  +V  +N +  G  +I   + A  LF+EM    
Sbjct: 176 LMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEMHCRK 235

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+GLCK+G I  +++L   +       DI  YS L+D LCK+ +++ A+
Sbjct: 236 LIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAI 295

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  +L    +  ++ TY+I+I GL   G+++ AH++F D+        V T+  +IHGF
Sbjct: 296 ALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGF 355

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                  + + LL KMK+ +  P+A    I++  L  N+
Sbjct: 356 CNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSLFDND 394



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 91/172 (52%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           V+ A  +   M + G+  +  TY+  +DG C    +  +  +F T+ +     ++ +Y+ 
Sbjct: 151 VKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNI 210

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +I+G CK    + A+ LF  +    L+ DVVTY+ +I+GL   G++  A  L  +M +  
Sbjct: 211 MINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRG 270

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             P++IT+ +L+    + ++  K I LL  +K++ + P+    +I++D L K
Sbjct: 271 QPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCK 322



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 65/117 (55%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            YS L+DG C    +  A  +F ++    + A+V +Y+IMI+G       D+A +LF +M
Sbjct: 172 TYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEM 231

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               + P+V+T+ +LI+G  +  + S  ++L+ +M ++   PD    S ++D L KN
Sbjct: 232 HCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKN 288



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 44/85 (51%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + VTYS ++ G     +++ A  +F  M    V  NV ++  +I+GF +I    + + L 
Sbjct: 169 NAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLF 228

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +M  + ++PD    + +++ L K+
Sbjct: 229 EEMHCRKLIPDVVTYNSLINGLCKS 253


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 119/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C    I  A +++  M + G+ P++  +NT+  G  +I  V++A +L+ EM  D
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGD 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ I IDGLCK   +V + +    +       +I  Y+CLIDG CK+G L  A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  ++ DV TYSI+I GL    +M++A  L  +M++    PN +T+ TLI G
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     K IE+  +M EK + P+    S ++D   K
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYCK   ++ AL LY EML  G+ P+VV    L  GL +  ++  A K   +M   G
Sbjct: 269 MMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   IDG CK G + E++ L   +   +   D+  YS LI GLC   R+E A 
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +   + + VTY+ +I G   +G M+KA ++   M E  + PN+ITF TLI G+
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
            +  +    + L  +M  K ++PD    + ++D   K+    N+  +F +H+  +E 
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG---NTKEAFRLHKEMQEA 502



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 106/193 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +  AL+L+SE+    I PDV  ++ L  GL  + ++E A  L  EM++ G
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   IDG CK G + +++E+   +     E +I  +S LIDG CK+G++E A+
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    L+ DVV Y+ +I G + DG   +A  L  +M+E  + PNV T   LI G 
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518

Query: 182 IRINEPSKVIELL 194
            +    S  I+L 
Sbjct: 519 CKDGRISDAIKLF 531



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 13/225 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +E A+ + S+M  KGI+P+++  +TL  G  +  ++E A  L+ EM   G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  IDG  K+G   E+  L + ++      ++   SCLIDGLCK GR+  A+
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAI 528

Query: 122 ELF-------------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           +LF             + L R +   + V Y+ +I GL  DG++ KA   F DM  + + 
Sbjct: 529 KLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR 588

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           P+V T   +I G  R      V+ L   + +  ++P++S+  ++ 
Sbjct: 589 PDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLA 633



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 112/217 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G  K    +    +Y +M+++G  P+VV + TL  G        +AF+LFDEM   
Sbjct: 163 MVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +      YTI I GLC    I E+  +FRT+R      ++  Y+ ++DG CK   ++ A
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL+  +    L+ +VVT+ I+I GL    +M  A    +DM    V PN+  +  LI G
Sbjct: 283 LELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           + +    S+ + L  ++++  ++PD    SI++  L 
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 7/248 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  E+  A     +M S G+ P++ ++N L  G  +   +  A  L  E+++ 
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY+I I GLC    + E+  L + ++      +   Y+ LIDG CK G +E A
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  +++T+S +I G    G+M+ A  L+ +M    + P+V+ +  LI G
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-------EISLNSLPSFTVHE 233
             +     +   L  +M+E  + P+   +S ++D L K+       ++ L    + T   
Sbjct: 483 HFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542

Query: 234 RQEEVDES 241
           +  E+D S
Sbjct: 543 KTNELDRS 550



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 21/197 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  ++E A+ LY+EM+ KG+ PDVV +  L  G F+    + AF+L  EMQ  G
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAG 503

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-----------------RTLRILKCELDIQAY 104
           +  +  T +  IDGLCK+G I ++++LF                 R+L    C  +   Y
Sbjct: 504 LHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSL----CSPNHVMY 559

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI GLC  GR+  A + F  +    L  DV T  ++I G +    +     L  D+ +
Sbjct: 560 TALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILK 619

Query: 165 NAVAPNVITFGTLIHGF 181
             + PN   +  L  G+
Sbjct: 620 MGIIPNSSVYRVLAKGY 636



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 3/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + +   +E AL +Y +M    + P +   N +  GL +  + +  +K++ +M   
Sbjct: 131 VLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVAR 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY   IDG C+ G  +++  LF  +   K    +  Y+ LI GLC   R+  A
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F ++    ++ ++ TY+ M+ G      + KA +L+ +M  + + PNV+TFG LI G
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +E     + L  M    V+P+  + + ++D   K
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCK 345



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
            N+ S + S    P+V     L I   E+  VE A  ++ +M    V    +   + +DG
Sbjct: 113 FNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDG 167

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L K G      +++  +       ++  Y  LIDG C+ G    A  LF  +    +   
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VV Y+I+I GL  + ++ +A  +F  M  + + PN+ T+ T++ G+ +I    K +EL  
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYX 287

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNE 220
           +M    ++P+     I++D L K +
Sbjct: 288 EMLGDGLLPNVVTFGILIDGLCKTD 312



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 21/220 (9%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L  Y   + K   P  ++    FIG     +  +A +LF +MQ D    D  T T+ +  
Sbjct: 699 LLWYFHTILKPPSPHEILKKVPFIGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSA 758

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
               G +     +   +R    + D+   + LI+   K G +  A  LF     G    D
Sbjct: 759 CADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFD----GTQKKD 814

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEE----------------NAVAPNVITFGTLIH 179
           V T++ MI G    GQ ++A  LF +M+E                + V PN +TF  ++ 
Sbjct: 815 VTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLM 874

Query: 180 GFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAK 218
                    +  +    MKE  ++ P  S    +VDLL +
Sbjct: 875 ACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCR 914



 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 29/196 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ--- 58
           LIN Y K  EI  A  L+     K    DV    ++ +G     Q E A +LF EM+   
Sbjct: 790 LINMYSKCGEIGTARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEMKETN 845

Query: 59  -------RDG------VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAY 104
                  R+G      V  +  T+   +      G + E  + FR+++        I  +
Sbjct: 846 KRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHF 905

Query: 105 SCLIDGLCKSGRLEIALELFHSLP--------RGVLVADVVTYSIMIHGLYNDGQMDKAH 156
            C++D LC++G L  A E    +P        R +L A  +      +G  N     +A 
Sbjct: 906 GCMVDLLCRAGLLTEAYEFILKMPVRPNAVVWRTLLGACSLQGDSNGNGNSNIKIXSEAR 965

Query: 157 DLFLDMEENAVAPNVI 172
              L++E + V  NVI
Sbjct: 966 RQLLELEPSHVGDNVI 981



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 37/217 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C +  I  A   +S+M   G++PDV     +  G F    +     L  ++ + G
Sbjct: 562 LIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMG 621

Query: 62  VAADTRTYTIFIDGLCKNGYIVESV----ELFRTLRILKCELDIQAYS-------CLI-- 108
           +  ++  Y +   G  ++GY+  ++    E  + L  +  E    +Y+       C++  
Sbjct: 622 IIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSE-PWGSYTIRSRFQLCVVTE 680

Query: 109 DGLCKSGRLE-------IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
              C S  L        + L  FH++ +     +++     I G   D + +KA  LF  
Sbjct: 681 KKECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFI-GQKGDQRPNKALQLFRQ 739

Query: 162 MEENAVAPNVIT---------------FGTLIHGFIR 183
           M+ +   P+++T                G  IH +IR
Sbjct: 740 MQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIR 776


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 128/259 (49%), Gaps = 34/259 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +IE A  LY EML  GI P++V++NTL  GL ++ +V +A +LFDE++   
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD 726

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  IDG CK+G + E+ +LF  +       D   Y  LIDG  K G LE AL
Sbjct: 727 LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKAL 786

Query: 122 ELFHSLPR---GVLVA-------------------------------DVVTYSIMIHGLY 147
            LFH   +   G L A                               ++VTY+I+I    
Sbjct: 787 SLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYG 846

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
               M++A  LFLDME   + PN +T+ +L+  + +I    K+I L   M+ + +  DA 
Sbjct: 847 KAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAI 906

Query: 208 IVSIVVDLLAKNEISLNSL 226
              ++     K   SL +L
Sbjct: 907 AYGVMASAYCKEGKSLEAL 925



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 8/222 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF----EIHQVERAFKLFDEM 57
           LI G C+ K++E A  L  +M  KGIKP+   +   FI L+    EI   ER FK   +M
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA-FINLYSKSGEIQVAERYFK---DM 582

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              G+  +   YTI I G C  G  VE++  F+ +       DI+AYS +I  L K+G+ 
Sbjct: 583 LSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKT 642

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A+ +F    +  +V DV  Y+ +I G   +G ++KA  L+ +M  N + PN++ + TL
Sbjct: 643 KEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I+G  ++ E +K  EL  +++EK+++PD    S ++D   K+
Sbjct: 703 INGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKS 744



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 126/238 (52%), Gaps = 6/238 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            IN Y K+ EI+ A   + +MLS GI P+ VI+  L  G  ++     A   F  M   G
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
           +  D R Y+  I  L KNG   E++ +F  L+ LK  +  D+  Y+ LI G CK G +E 
Sbjct: 622 LIPDIRAYSAIIHSLSKNGKTKEAMGVF--LKFLKTGVVPDVFLYNSLISGFCKEGDIEK 679

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +L+  +    +  ++V Y+ +I+GL   G++ KA +LF ++EE  + P+V+T+ T+I 
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIID 739

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           G+ +    ++  +L  +M  K + PD  I  I++D   K      +L  F  HE Q++
Sbjct: 740 GYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLF--HEAQQK 795



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G+CK K  + A  ++  M S G+ P+   +  L  G  +   +E A ++ DEM   
Sbjct: 316 LLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITR 375

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I G+ K G + +++ LF  + +   E D   Y+ LIDG  KS  +  A
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKA 435

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L     TYS++I GL +   + KA+++   M  N V PNV  +GTLI  
Sbjct: 436 CELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKA 495

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           +++ +     IELL  M    V+PD
Sbjct: 496 YVQESRYEMAIELLKIMIANGVLPD 520



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K   IE AL +  EM+++G+K +VV +N +  G+ +  ++ +A  LF+EM   G
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY + IDG  K+  + ++ EL   ++  K       YS LI GLC S  L+ A 
Sbjct: 412 LEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + R  +  +V  Y  +I     + + + A +L   M  N V P++  +  LI G 
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  +  +   LL  M EK + P+A      ++L +K+
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKS 569



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 17/240 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK+  +  A  L+ EM+SKGI PD  I+  L  G  +   +E+A  LF E Q+  
Sbjct: 737 IIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS 796

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V +    +   ID  CK+G ++E+ ELF  +   K   +I  Y+ LID   K+  +E A 
Sbjct: 797 VGS-LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAE 855

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    ++ + +TY+ ++      G   K   LF DME   +A + I +G +   +
Sbjct: 856 QLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 915

Query: 182 IRINEPSKVIELLHK-----MKEKNVMPDASI--------VSIVVDLLA---KNEISLNS 225
            +  +  + ++LL+K     +K ++ + DA I        +S V++LL+   K E+SL+S
Sbjct: 916 CKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSS 975



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 107/212 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C       AL+ +  ML KG+ PD+  ++ +   L +  + + A  +F +  + 
Sbjct: 596 ILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT 655

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y   I G CK G I ++ +L+  +       +I  Y+ LI+GLCK G +  A
Sbjct: 656 GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKA 715

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    LV DVVTYS +I G    G + +A  LF +M    ++P+   +  LI G
Sbjct: 716 RELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDG 775

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             +     K + L H+ ++K+V   ++  S++
Sbjct: 776 CGKEGNLEKALSLFHEAQQKSVGSLSAFNSLI 807



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 100/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G C+   ++ AL +   M+ KG+ PD   +  L  G  +  + + A  +F+ M   G
Sbjct: 282 FIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSG 341

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  IDG  K G I E++ +   +     +L++  Y+ +I G+ K+G +  A+
Sbjct: 342 LNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAM 401

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    L  D  TY+++I G      M KA +L  +M+   + P+  T+  LI G 
Sbjct: 402 SLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGL 461

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              ++  K  E+L +M    V P+
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPN 485



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 106/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G  K  E+  A++L++EML  G++PD   +N L  G  + H + +A +L  EM+   
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARK 446

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY++ I GLC +  + ++ E+   +     + ++  Y  LI    +  R E+A+
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    ++ D+  Y+ +I GL    ++++A  L +DM E  + PN  T+G  I+ +
Sbjct: 507 ELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLY 566

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  E          M    ++P+  I +I++
Sbjct: 567 SKSGEIQVAERYFKDMLSSGIVPNNVIYTILI 598



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 45/247 (18%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y  M+   I PDV  +  +     ++  V +   +  EM+++    +  TY  FI GLC
Sbjct: 229 VYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLC 287

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP--------- 128
           + G + E++E+ + +       D   Y+ L+DG CK  R + A  +F S+P         
Sbjct: 288 QTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF 347

Query: 129 ---------------------------RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
                                      RG L  +VVTY+ MI G+   G+M KA  LF +
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRG-LKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-------D 214
           M    + P+  T+  LI G+++ ++ +K  ELL +MK + + P     S+++       D
Sbjct: 407 MLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466

Query: 215 LLAKNEI 221
           L   NE+
Sbjct: 467 LQKANEV 473



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A +++   +S+G  P ++  N L   L + + +   +K++  M    +  D  TYT  I 
Sbjct: 191 ASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIK 250

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             CK G +++   +   +   +C+ ++  Y+  I GLC++G ++ ALE+   +    L  
Sbjct: 251 AHCKVGDVIKGKMVLSEME-KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGP 309

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           D  TY++++ G     +  +A  +F  M  + + PN  T+  LI GFI+
Sbjct: 310 DGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIK 358



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 81/174 (46%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI+ Y K + +E A  L+ +M ++ I P+ + + +L +   +I    +   LF +M+  
Sbjct: 840  ILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEAR 899

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+A D   Y +     CK G  +E+++L     +   +L+   +  LI  LCK  ++   
Sbjct: 900  GIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTV 959

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            LEL   + +  L     T + ++ G Y  G  D+A  +   M+     P  ++ 
Sbjct: 960  LELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSL 1013



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 101/200 (50%), Gaps = 5/200 (2%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+ +CK+ ++  A  L+ +M+ K + P++V +  L     +   +E A +LF +M+   
Sbjct: 806  LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 865

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  +T TYT  +    + G   + + LF+ +       D  AY  +    CK G+   AL
Sbjct: 866  IIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEAL 925

Query: 122  ELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L + SL  G+ + D V  +++ H L  + Q+    +L  +M +  ++ +  T  TL+ G
Sbjct: 926  KLLNKSLVEGIKLEDDVFDALIFH-LCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLG 984

Query: 181  FIRI---NEPSKVIELLHKM 197
            F +    +E SKV+ ++ ++
Sbjct: 985  FYKSGNEDEASKVLGVMQRL 1004



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+  L K+  + +  +++ S+    +V DV TY+ +I      G + K   +  +ME+  
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC 272

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS---- 222
             PN+ T+   I G  +     + +E+   M EK + PD    +++VD   K + S    
Sbjct: 273 -KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 223 --LNSLPS 228
               S+PS
Sbjct: 332 LIFESMPS 339


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  ++E A  L+  M S+G  P+VV ++ L  GL ++ +++ A +L  EM R  
Sbjct: 122 LIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 181

Query: 62  --VAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
             V  +  TY  F+DGLCK     E+ EL R+LR   L+   D   +S LIDGLCK G+ 
Sbjct: 182 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQT 241

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A      +  G  V +VVTY+ +++GL    +M++AH +   M +  V P+VIT+  L
Sbjct: 242 DEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 299

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
           +  F + +   + +ELLH M  +   P+    + ++D L K++ S
Sbjct: 300 VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRS 344



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK    E A  L+ EM++K ++PDV+    L  GL +  QVE A  + D M   
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY + + GLCK+G I E  E    +    C  +   Y  L+  LC++ R + A
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDA 487

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   L       D VTY+I++ GL+  G+ ++A  +  +M      P+  TF     G
Sbjct: 488 LQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGG 547

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R    +  +ELL  +  K ++PDA+  S ++D
Sbjct: 548 LHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 10/222 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  + + A N   +M++ G  P+VV +N L  GL +  ++ERA  + + M   G
Sbjct: 231 LIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----L 117
           V  D  TY++ +D  CK   + E++EL   +    C  ++  ++ +IDGLCKS R     
Sbjct: 289 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAF 348

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           +IAL++++ +    LV D VT++I+I G    G  ++A  LF +M    + P+V+TFG L
Sbjct: 349 QIALQVYNRM----LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGAL 404

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I G  +  +     ++L  M    V P+    +++V  L K+
Sbjct: 405 IDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKS 446



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 118/219 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +CK   ++ AL L   M S+G  P+VV  N++  GL +  +   AF++  ++   
Sbjct: 298 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR 357

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T+ I I G CK G   ++  LF  +     + D+  +  LIDGLCK+G++E A
Sbjct: 358 MLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAA 417

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +    +  +VVTY++++HGL   G++++  +   +M  +   P  +T+G+L++ 
Sbjct: 418 RDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYA 477

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R +     ++L+ K+K     PD    +I+VD L K+
Sbjct: 478 LCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKS 516



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 42/258 (16%)

Query: 1   ILINGYCKNKEIEGALNLY-SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I++   C+  E   AL ++  EM   G+ P +V +NT+  GL + +++    +LF+E+ +
Sbjct: 50  IVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVK 109

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  TY   ID LCK G + E+  L   +    C  ++  YS LI+GLCK GR++ 
Sbjct: 110 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDE 169

Query: 120 ALELFHSLPR-------------------------------------GVL--VADVVTYS 140
           A EL   + R                                     G L    D VT+S
Sbjct: 170 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 229

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I GL   GQ D+A +   DM      PNV+T+  L++G  + ++  +   ++  M +K
Sbjct: 230 TLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDK 287

Query: 201 NVMPDASIVSIVVDLLAK 218
            V PD    S++VD   K
Sbjct: 288 GVTPDVITYSVLVDAFCK 305



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 69  YTIFIDGLCKNGYIVESVELFRT-LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           Y I +  LC+ G    ++E+FR  +        I  Y+ +I+GLCKS  L   +ELF  L
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DVVTY+ +I  L   G +++A  L   M      PNV+T+  LI+G  ++   
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 188 SKVIELLHKMKEK--NVMPDASIVSIVVDLLAKNEIS 222
            +  EL+ +M  K  +V+P+    +  +D L K  ++
Sbjct: 168 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMT 204


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 120/203 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K ++ AL+L+ EM  + I PD V +N+L  GL +  ++  A++L DEM+  
Sbjct: 341 IVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDS 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TY   ID LCKN ++ +++ L + ++    +LD+  Y+ LIDGLCK GRL+ A
Sbjct: 401 GQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L        V TY+IMI+GL  +G +++A  L   ME+N   P+ +T  T+I  
Sbjct: 461 QVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRA 520

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               ++  +  +LL +M  + ++
Sbjct: 521 LFENDKNERAEKLLREMIARGLL 543



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 110/211 (52%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K     ++L+ ++   GIKP++V  + L      + Q+  AF +F ++ + G   +T 
Sbjct: 83  KLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTI 142

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T T  + G C N  + E++     +  L    +  +Y  LI+GLCK G    AL++   +
Sbjct: 143 TLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQI 202

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  DVV YS +I GL  D  ++ A++L+ +M    ++P V+T  +LI+G+  + + 
Sbjct: 203 EGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQF 262

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   LL +M  KN+ PD    +I+VD L K
Sbjct: 263 KEAFGLLREMVLKNINPDVYTFNILVDALCK 293



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 20/240 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF--------------------IG 40
           IL++  CK  +I+ A +  + M+ +G+ PDVV +++L                      G
Sbjct: 286 ILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVING 345

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
             +I  V++A  LF EM+   +A DT TY   IDGLCK+G I  + EL   +R      D
Sbjct: 346 FCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPAD 405

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           I  Y+ LID LCK+  ++ A+ L   +    +  D+ TY+I+I GL   G++  A  +F 
Sbjct: 406 IITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQ 465

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           D+        V T+  +I+G       ++   LL KM++   +PDA     ++  L +N+
Sbjct: 466 DLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFEND 525



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC   ++  A ++++++L  G  P+ +   TL  G    H+V+ A    D +   
Sbjct: 111 ILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLAL 170

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+GLCK G    ++++ R +       D+  YS +IDGLCK   +  A
Sbjct: 171 GFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDA 230

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +   VVT + +I+G    GQ  +A  L  +M    + P+V TF  L+  
Sbjct: 231 YELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDA 290

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +    +  M ++ VMPD    S ++D
Sbjct: 291 LCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMD 324



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 20/238 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C N +++ AL+ +  +L+ G   + V + TL  GL +I +   A ++  +++   
Sbjct: 147 LVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKL 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D   Y+  IDGLCK+  + ++ EL+  +   +    +   + LI G C  G+ + A 
Sbjct: 207 VSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAF 266

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL---- 177
            L   +    +  DV T++I++  L  +G++ +A      M +  V P+V+T+ +L    
Sbjct: 267 GLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGY 326

Query: 178 ----------------IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                           I+GF +I    K + L ++M+ + + PD    + ++D L K+
Sbjct: 327 CLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKS 384



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + LF  L     + +I + S LI+  C  G++  A  +F  + +     + +T + ++ G
Sbjct: 91  ISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKG 150

Query: 146 LYNDGQMDKA---HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
              + ++ +A   HD  L +       N +++GTLI+G  +I E    +++L +++ K V
Sbjct: 151 FCLNHKVKEALHFHDHVLAL---GFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLV 207

Query: 203 MPDASIVSIVVDLLAKNEI 221
             D  + S ++D L K+++
Sbjct: 208 STDVVMYSTIIDGLCKDKL 226


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 2   LINGYCKN-KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G C+  + +E A  L  +M+  G KPD+V +N L  GL     V  A KLF  + R 
Sbjct: 228 LISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQ 287

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY I IDGL K   + E+ ELF  L     E D   Y+  IDGLCK+GR+E A
Sbjct: 288 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDA 347

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   +     V DVV+++ +I+GL  + ++D+A  L   ME    +PN I+F TLI G
Sbjct: 348 LLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICG 407

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R  +  K +    +M ++ V P     +I+VD L K
Sbjct: 408 QCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 445



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G CK   +E AL +  +M  KG  PDVV HN +  GL +  +V+ A  L   M+  
Sbjct: 333 VFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK 392

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS---GRL 117
           G + +  ++   I G C+ G   +++  F+ +     +  +  Y+ L+DGLCK+   GR+
Sbjct: 393 GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 452

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A+ LF ++     V DVVTYS +I GL   G++D A  L   ME     PNV T+ +L
Sbjct: 453 KEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSL 512

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           I G   +++  + +EL   M EK  +PD      ++  L K E+   +L  F
Sbjct: 513 ISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALF 564



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK K ++ A  L S M +KG  P+ +  NTL  G     + ++A   F EM + G
Sbjct: 369 VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 428

Query: 62  VAADTRTYTIFIDGLCK---NGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRL 117
           V     TY I +DGLCK    G I E++ LF  + I K  + D+  YS LIDGL K+G+L
Sbjct: 429 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAM-IEKGRVPDVVTYSALIDGLGKAGKL 487

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  L  ++     + +V TY+ +I GL    ++D+A +LF+ M E    P+ IT+GT+
Sbjct: 488 DDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTI 547

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           I    +     K + L     E  V+P + +   ++D L
Sbjct: 548 ISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGL 586



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  + + +  AL L+  +L +G +P+V  +N L  GL +  +V  AF+LF  + + G
Sbjct: 264 LIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+FIDGLCK G + +++ + + +    C  D+ +++ +I+GLCK  R++ A 
Sbjct: 324 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       + ++++ +I G    G+  KA   F +M +  V P V+T+  L+ G 
Sbjct: 384 VLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 443

Query: 182 IRINEPSKV---IELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  ++   I L   M EK  +PD    S ++D L K
Sbjct: 444 CKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGK 483



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK  +++ A  +   M+S+ + PDVV +N+L  GL +  +V+ A  L  +    G
Sbjct: 161 LINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESV-ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            + +  TY+  I GLC+    +ES  +L   + +  C+ DI +Y+ LI GL +   +  A
Sbjct: 218 FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEA 277

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF S+ R     +V TY+I+I GL  + ++++A +LF  + ++ + P+ IT+   I G
Sbjct: 278 LKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 337

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +       + +L  M EK  +PD    + V++ L K +
Sbjct: 338 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 377



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ---VERAFKLFDEMQ 58
           LI G C+  + + A+  + EML +G+KP VV +N L  GL +  Q   ++ A  LFD M 
Sbjct: 404 LICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMI 463

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G   D  TY+  IDGL K G + ++  L   +    C  ++  Y+ LI GLC   +++
Sbjct: 464 EKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVD 523

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            ALELF ++     V D +TY  +I  L     +DKA  LF    E  V P    + +LI
Sbjct: 524 EALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLI 583

Query: 179 HGFIRINEPSKVIELLH 195
            G   +    + ++LL 
Sbjct: 584 DGLCAVARVDEALKLLQ 600



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           PD      L   L +  ++E+A +  +++   G+  D  T+ I+I GLC+   I ++  +
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQTV 72

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  +R      +   Y+ L+ GLC  GR+  A  L+  + +     DVVTY+ ++HG   
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++D+A  +F    +    P+V+T+  LI+GF + ++  +   +L +M  ++++PD   
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192

Query: 209 VSIVVDLLAKN 219
            + +V+ L KN
Sbjct: 193 YNSLVNGLCKN 203



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+    K+ +IE A     ++L KG+  D+   N    GL    ++  A  +FD M++ 
Sbjct: 21  ILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTVFDGMRKH 79

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   + GLC  G + ++  L+  +       D+  Y+ L+ G CK G+L+ A
Sbjct: 80  GFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEA 139

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F    +   V DVVTY+ +I+G     ++D+A  +   M   ++ P+V+T+ +L++G
Sbjct: 140 LKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNG 199

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVS 210
                R++E   +I  + K    NV+  ++++S
Sbjct: 200 LCKNGRVDEARMLI--VDKGFSPNVITYSTLIS 230


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 122/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML +GIKP  ++++ +  GLF+  +   A   F EM   G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG 634

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY I + GL KN    E++ LF+ LR +  +++I   + +IDG+ ++ R+E A 
Sbjct: 635 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 694

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV  VVTYSIMI  L  +G +++A D+F  M+     PN      ++   
Sbjct: 695 DLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVREL 754

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 755 LKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFS 790



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 116/216 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KPDVV + T+   L  I +++ A + F++M   
Sbjct: 399 VLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D   Y   I G C +G ++++ EL   +      LDI  +S +I+ LCK GR+  A
Sbjct: 459 GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA 518

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L  D V YS+++ G    G+M+KA  +F  M    + PNV+ + TL++G
Sbjct: 519 QNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNG 578

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +I    + + L  +M ++ + P   + SI++D L
Sbjct: 579 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 614



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A     +M++K + P+   +N L  G     Q + A ++F EM+R  
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T ++ +  LCK G I E+ ++F T+ +     D+ +Y+ +++G    G L    
Sbjct: 320 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  D  T++++I    N G +DKA  +F +M ++ V P+V+T+ T+I   
Sbjct: 380 DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            RI +    +E  ++M ++ V PD
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPD 463



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L+ EM+ +GI PD+V +N++   L +   +++A     +M    
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G    G   E+V +F+ +R      D+   S L+  LCK G+++ A 
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 344

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DV +Y+IM++G    G +    DLF  M  + +AP+  TF  LI  +
Sbjct: 345 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 404

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K + + ++M++  V PD      V+  L +
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++   +    E AL  + ++L  G++ +++I N L  G  E  + + A   L      
Sbjct: 116 ILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPE 175

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y+I +  LC  G   ++ +L R +      C  ++ AY+ +IDG  K G +
Sbjct: 176 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 235

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LF  + +  +  D+VTY+ ++H L     MDKA      M    V PN  T+  L
Sbjct: 236 NKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNL 295

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+G+    +  + + +  +M+  +++PD   +S+++  L K
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C +  +  A  L SE+++ G+  D+V  +++   L ++ +V  A  +FD     G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y++ +DG C  G + +++ +F  +     E ++  Y  L++G CK GR++  L
Sbjct: 530 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +    + YSI+I GL+  G+   A   F +M E+ +A ++ T+  ++ G 
Sbjct: 590 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     + I L  +++  NV  +   ++ ++D
Sbjct: 650 FKNRCFDEAIFLFKELRAMNVKINIITLNTMID 682



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY    + + A+ ++ EM    I PDVV  + L   L +  +++ A  +FD M   G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y I ++G    G +V+  +LF  +       D   ++ LI      G L+ A+
Sbjct: 355 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 414

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +    +  DVVTY  +I  L   G+MD A + F  M +  VAP+   +  LI GF
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 474

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K  EL+ ++    +  D    S +++ L K
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+ K  + AL+ L       G  PDV  ++ L   L +  +  +A  L   M   
Sbjct: 152 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 61  GV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   + +   Y   IDG  K G + ++ +LF+ +       D+  Y+ ++  LCK+  ++
Sbjct: 212 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 271

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++ +  TY+ +I+G  + GQ  +A  +F +M  +++ P+V+T   L+
Sbjct: 272 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  +  ++   M  K   PD    +I+++
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 367



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 56/224 (25%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELF-------RTL 92
           E A  L DE+QR G     R    F+  L        C++G  + +V LF       +  
Sbjct: 46  EEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGP 104

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF---------------------------- 124
           R+L        Y+ L+D   ++ R E+AL  F                            
Sbjct: 105 RVL--SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRT 162

Query: 125 --------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV--APNVITF 174
                   H  P    V DV +YSI++  L + G+  +A DL   M E     +PNV+ +
Sbjct: 163 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAY 222

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+I GF +  + +K  +L  +M ++ + PD    + VV  L K
Sbjct: 223 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCK 266


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYCK   I+ A  L+ EML KG+ P  V ++T+  GLF   +   A +L+  M + G
Sbjct: 625 LLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG 684

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ++GLCK   + E+ ++F++L       +I  ++ +ID L K GR + A+
Sbjct: 685 QQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAM 744

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+P   LV +VVTY IM+  +  +G +D+  +LFL ME++   P+ +    +I   
Sbjct: 745 DLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSL 804

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
           +   E  +    L K+ E N   +AS  S+++ L ++ E      SLP
Sbjct: 805 LGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSLP 852



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L+ G C  K +E AL L   M   G     P+VV +NT+  GL +   V+RA  +   M 
Sbjct: 167 LLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMI 226

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             GV  D  TY+  IDGLCK   +  +  + + +     + D+  Y+ +IDGLCK+  ++
Sbjct: 227 DKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVD 286

Query: 119 IALELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            A  +  H + +GV   DVVTY+ +I GL     +D+A  +   M +  V P++ T+  L
Sbjct: 287 RAEGVLQHMIDKGV-KPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCL 345

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           IHG++   E  +V+  L +M  + + PD    S+++D L KN
Sbjct: 346 IHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKN 387



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C     E A  L+ EM  +G++P+VV  NT+   L    QV  A +L D M+R G
Sbjct: 520 LVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   I G C  G   E+ +L   +  +  + D+ +Y  L+ G CK+GR++ A 
Sbjct: 580 VRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAY 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R  +    VTYS ++ GL++  +  +A +L+L+M ++    ++ T+  +++G 
Sbjct: 640 CLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGL 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   +  ++   +  K++ P+    +I++D+L K
Sbjct: 700 CKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFK 736



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  +   M+ KG+KPDVV +NT+  GL +   V+RA  +   M    
Sbjct: 275 IIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKD 334

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D +TY   I G    G   E V     +     + D+  YS L+D LCK+G+   A 
Sbjct: 335 VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEAR 394

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ + R  +  +V  Y I++HG    G +    DL   M  N ++PN   F  ++  +
Sbjct: 395 KIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAY 454

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + +  +M +  + PD     I++D L K
Sbjct: 455 AKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK   ++ A+  +++M++ G+ P+ V+ N+L  GL  + + E+A +LF EM   
Sbjct: 484 ILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQ 543

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   +   +  LC  G ++ +  L  ++  +    ++ +Y+ LI G C +GR + A
Sbjct: 544 GVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEA 603

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L  D+++Y  ++ G    G++D A+ LF +M    V P  +T+ T++ G
Sbjct: 604 AQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQG 663

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  S+  EL   M +     D    +I+++ L K 
Sbjct: 664 LFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKT 702



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 35/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  +   M+ K +KPD+  +N L  G     + +   +  +EM   G
Sbjct: 310 IIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG----------- 110
           +  D  TY++ +D LCKNG   E+ ++F  +     + ++  Y  L+ G           
Sbjct: 370 LDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLT 429

Query: 111 ---------------------LC---KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                LC   K   ++ A+ +F  + +  L  DVVTY I+I  L
Sbjct: 430 DLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDAL 489

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              G++D A   F  M  + V PN + F +L++G   ++   K  EL  +M ++ V P+
Sbjct: 490 CKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPN 548



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CKN +   A  ++  M+ KGIKP+V I+  L  G      +     L D M  +
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +   + I +    K   I E++ +F  +       D+  Y  LID LCK GR++ A
Sbjct: 439 GISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDA 498

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F+ +    +  + V ++ +++GL    + +KA +LF +M +  V PNV+ F T++  
Sbjct: 499 VLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCN 558

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                +      L+  M+   V P+
Sbjct: 559 LCNEGQVMVAQRLIDSMERVGVRPN 583



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 7/215 (3%)

Query: 13  EGALNLYSEM---LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           E A++L++ M    S  ++PD+  ++ L      + ++E  F  F  + + G   +    
Sbjct: 69  ELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVI 128

Query: 70  TIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
              ++GLC    + E+++ L R +    C  ++ + + L+ GLC   R+E ALEL H++ 
Sbjct: 129 NQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMA 188

Query: 129 R---GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
               G    +VVTY+ +I GL     +D+A  +   M +  V  +V+T+ T+I G  +  
Sbjct: 189 EDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQ 248

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +   +L  M +K V PD    + ++D L K +
Sbjct: 249 AVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQ 283



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK   ++ A  ++  + SK ++P+++    +   LF+  + + A  LF  +   
Sbjct: 694 IILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSH 753

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS--GRLE 118
           G+  +  TY I +  + + G + E   LF  +    C  D    S +++ + +S  GR E
Sbjct: 754 GLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPD----SVMLNAIIRSLLGRGE 809

Query: 119 I 119
           I
Sbjct: 810 I 810


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI--KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           L+ G+C+   +  AL ++ +++SK +   P+ V ++ L  GL E+ ++E AF L D+M  
Sbjct: 236 LLLGFCRGLNLRDALKVF-DVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G    TRTYT+ I  LC  G I ++  LF  +    C+ ++  Y+ LIDGLC+ G++E 
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEE 354

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +   + +  +   V+TY+ +I+G   DG++  A +L   ME+ A  PNV TF  L+ 
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELME 414

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  R+ +P K + LL +M +  + PD    ++++D L +
Sbjct: 415 GLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 112/219 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C+   +E A  L  +M  KG +P    +  L   L +   +++AF LFDEM   
Sbjct: 271 ILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPR 330

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYT+ IDGLC++G I E+  + R +   +    +  Y+ LI+G CK GR+  A
Sbjct: 331 GCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPA 390

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +     +V T++ ++ GL   G+  KA  L   M +N ++P+++++  LI G
Sbjct: 391 FELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDG 450

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R    +   +LL  M   ++ PD    + +++   K 
Sbjct: 451 LCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQ 489



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C    I+ A NL+ EM+ +G KP+V  +  L  GL    ++E A  +  +M +D
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY   I+G CK+G +V + EL   +    C+ +++ ++ L++GLC+ G+   A
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    L  D+V+Y+++I GL  +G M+ A+ L   M    + P+ +TF  +I+ 
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +       L  M  K +  D    + ++D + K
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK 523



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 113/219 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C++ +IE A  +  +M+   I P V+ +N L  G  +  +V  AF+L   M++ 
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + RT+   ++GLC+ G   ++V L + +       DI +Y+ LIDGLC+ G +  A
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L  S+    +  D +T++ +I+     G+ D A      M    ++ + +T  TLI G
Sbjct: 461 YKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             ++ +    + +L  + +  ++     +++++D+L+K 
Sbjct: 521 VCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKG 559



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 98/200 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN +CK  + + A      ML KGI  D V   TL  G+ ++ +   A  + + + +  
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMR 541

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     +  + +D L K   + E + +   +  L     +  Y+ L+DGL +SG +  + 
Sbjct: 542 ILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSF 601

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     + +V  Y+I+I+GL   G++++A  L   M+++ V+PN +T+  ++ G+
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661

Query: 182 IRINEPSKVIELLHKMKEKN 201
           +   +  + +E +  M E+ 
Sbjct: 662 VNNGKLDRALETVRAMVERG 681



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 5/197 (2%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G + +   +++L + L ++     A+  +  M+ DG       Y   ++ LCKNGY  E+
Sbjct: 155 GFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGY-TEA 213

Query: 86  VELFRTLRILKCE--LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-DVVTYSIM 142
            E+F + +ILK    LD    + L+ G C+   L  AL++F  + + V  A + V+YSI+
Sbjct: 214 AEMFMS-KILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSIL 272

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           IHGL   G++++A  L   M E    P+  T+  LI          K   L  +M  +  
Sbjct: 273 IHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGC 332

Query: 203 MPDASIVSIVVDLLAKN 219
            P+    ++++D L ++
Sbjct: 333 KPNVHTYTVLIDGLCRD 349



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 15  ALNLYSEMLSKGIK-----------------PDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LN+  +MLSKG K                 P VV + TL  GL     +  +F++ + M
Sbjct: 548 SLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELM 607

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  G   +   YTI I+GLC+ G + E+ +L   ++      +   Y+ ++ G   +G+L
Sbjct: 608 KLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKL 667

Query: 118 EIALELFHSL-PRGVLVADVVTYSIMIHGL 146
           + ALE   ++  RG  + D + YS ++ G 
Sbjct: 668 DRALETVRAMVERGYELNDRI-YSSLLQGF 696


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  +  +I  A ++Y  M S+G  PDVV  +T+  GL +  ++  A ++F  M+  G
Sbjct: 145 LIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +   Y+  I GLCK   +  ++E+   ++   C  D   Y+ LIDGLCKSG +  A 
Sbjct: 205 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAAR 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +       DV TY+I+I G    G  D A  +F DM  +  +PNV+T+GTLI G 
Sbjct: 265 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGL 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + +K       MKE+   PD+ + S +VD L K+
Sbjct: 325 CKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKS 362



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   +E A++L  +++  G  PDVV + +L  GL +  +   A+KLF EM   G
Sbjct: 75  LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRG 134

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT  YT  I GL + G I ++  +++T+    C  D+   S +IDGLCK+GR+  A+
Sbjct: 135 LALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAV 194

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F S+    L  + V YS +IHGL    +MD A ++   M++    P+ IT+  LI G 
Sbjct: 195 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 254

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + +       +M E    PD    +I++    K
Sbjct: 255 CKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCK 291



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   KNK+I+ A+ L  ++ + G  P +  +N L  GL ++ ++E A  L  ++  +G
Sbjct: 40  IVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 99

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  IDGL K     E+ +LF+ +      LD   Y+ LI GL ++G++  A 
Sbjct: 100 CTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQAS 159

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++ ++     V DVVT S MI GL   G++  A  +F  ME   +APN + +  LIHG 
Sbjct: 160 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 219

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +    +E+L +MK+    PD    +I++D L K+
Sbjct: 220 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 257



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   I  A+ ++  M ++G+ P+ V+++ L  GL +  +++ A ++  +M++  
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY I IDGLCK+G +  +   F  +    C+ D+  Y+ LI G CK+G  + A 
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 299

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       +VVTY  +I GL    Q+ KA   +  M+E    P+   + +L+ G 
Sbjct: 300 GVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGL 359

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +  +      L  +M+   V    +   ++  L   N +
Sbjct: 360 CKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRV 399



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 5/195 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK+ ++  A   + EML  G KPDV  +N L  G  +    + A  +FD+M   
Sbjct: 249 ILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSS 308

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + +  TY   I GLCK   + ++   ++ ++   C  D   YS L+DGLCKSG+LE  
Sbjct: 309 RCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGG 368

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + R   VA+  T + +I  L    ++D+A  LF  + +  + P+   + ++I  
Sbjct: 369 CMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISA 426

Query: 181 FI---RINEPSKVIE 192
            I   ++NE   V +
Sbjct: 427 LIKSGKVNEGQAVYQ 441



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 35/186 (18%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID------------------ 109
           T++I I+GL K G ++++  L +      C +DI  Y+ ++D                  
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 110 -----------------GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                            GLCK GRLE A++L   +       DVVTY+ +I GL    + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
            +A+ LF +M    +A + + +  LI G ++  +  +   +   M  +  +PD   +S +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 213 VDLLAK 218
           +D L K
Sbjct: 181 IDGLCK 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 59/126 (46%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           +S LI+GL K+G L  A  L           D+ TY+ ++  L  + ++ +A  L   + 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
            N   P + T+  L++G  ++    + I+LL K+ +    PD    + ++D L K + S 
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 224 NSLPSF 229
            +   F
Sbjct: 122 EAYKLF 127


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC++  I+ A +++ EMLS GI P VV +NT+  GLF+  +   A +L+  M   G
Sbjct: 560 LLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG 619

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY I ++GL KN  + E++++F++L     ++DI  ++ +I  L K GR E A+
Sbjct: 620 KQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAM 679

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++    LV DV TY ++   L  +G +++   +F +ME++  APN +    L+   
Sbjct: 680 NLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRL 739

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
           +   + S+    L K+ EKN   +AS  S+++ L ++ E    SLP
Sbjct: 740 LLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSREEHQAKSLP 785



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+    +++ A NL+ +M  +GI P+VV +  +  GL +   V+RA  +F +M   G
Sbjct: 210 VINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKG 269

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  I G    G   E V + + +     E D   Y  L+D LCK G+   A 
Sbjct: 270 VRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEAR 329

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIHG 180
           +LF S+ R  +  DV  Y I++HG    G + + H  FLD M  N ++PN   F  +   
Sbjct: 330 KLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHS-FLDLMVGNGISPNHYIFNIVFCA 388

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +     + +++ +KM+++ + P+    + ++D L K
Sbjct: 389 FAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCK 426



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 117/228 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A   +++M+++G+ P++V+  +L  GL  I + E+A +LF EM   G
Sbjct: 420 LIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQG 479

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   +  LC  G ++++  L   +  +    DI +Y+ LI G C  G+ + A 
Sbjct: 480 IHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEAS 539

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +  TY+ ++HG   DG++D A+ +F +M  N + P V+T+ T++HG 
Sbjct: 540 KLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGL 599

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +    S+  EL   M            +I+++ L+KN     +L  F
Sbjct: 600 FKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMF 647



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK + ++ A  ++ +M+ KG++P++V +  L  G   I Q +   ++  EM   
Sbjct: 244 IVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAH 303

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE-- 118
           G+  D  TY + +D LCK G   E+ +LF ++     + D+  Y  ++ G    G L   
Sbjct: 304 GLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEM 363

Query: 119 ---------------------------------IALELFHSLPRGVLVADVVTYSIMIHG 145
                                             A+++F+ + +  L  +VV Y+ +I  
Sbjct: 364 HSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDA 423

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++D A   F  M    VAPN++ F +L++G   I++  K  EL  +M  + + P+
Sbjct: 424 LCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPN 483



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E A  L+ EM+++GI P+VV  NT+   L    +V +A +L D M+R G
Sbjct: 455 LVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVG 514

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y   I G C  G   E+ +L   +  +  + +   Y+ L+ G C+ GR++ A 
Sbjct: 515 TRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAY 574

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    +   VVTY+ ++HGL+   +  +A +L+L+M  +    ++ T+  +++G 
Sbjct: 575 SVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGL 634

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N   + +++   +  K++  D    +I++  L K+
Sbjct: 635 SKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKD 672



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 40/232 (17%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADTRTYTIFIDGLCKNGYIVES 85
           + PDV  ++ L      + ++E  F  F  + + G    D       + GLC    + E+
Sbjct: 90  VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149

Query: 86  VE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA---DVVTYSI 141
           +  L R +  L C  ++ +Y+ L+ G C   R E ALEL H +  G + +   ++V+Y+ 
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNT 209

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNV------------------------------ 171
           +I+G + +GQ+DKA++LFLDM +  + PNV                              
Sbjct: 210 VINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKG 269

Query: 172 -----ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +T+  LIHG++ I +  +V+ +L +M    + PD     +++D L K
Sbjct: 270 VRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCK 321



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 97/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CK  +   A  L+  M+ KGIKPDV I+  +  G      +       D M  +
Sbjct: 314 LLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN 373

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +   + I      K   I E++++F  +R      ++  Y+ LID LCK GR++ A
Sbjct: 374 GISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDA 433

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F+ +    +  ++V ++ +++GL    + +KA +LF +M    + PNV+ F T++  
Sbjct: 434 ELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCN 493

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                   K   L+  M+     PD
Sbjct: 494 LCTEGRVMKAQRLIDLMERVGTRPD 518



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 48/97 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG  KN  ++ AL ++  + SK ++ D++  N +   L +  + E A  LF  +  +
Sbjct: 629 IILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISAN 688

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC 97
           G+  D  TY +  + L + G + E   +F  +    C
Sbjct: 689 GLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGC 725



 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I    K+   E A+NL++ + + G+ PDV  +  +   L E   +E    +F EM++ 
Sbjct: 664 IMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKS 723

Query: 61  GVAADT 66
           G A ++
Sbjct: 724 GCAPNS 729


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  E+E    L SEM   G   DVV +N L     +   +E+A+  F EM+R G
Sbjct: 240 LIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  T + F+D  CK G + E+++LF  +R+     +   Y+ L+DG CK+GRL+ A+
Sbjct: 300 VMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAI 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    LV +VVTY++M+ GL  +G++  A D+   ME   V  N + + TLIHG 
Sbjct: 360 VLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGH 419

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + ++LL++MK K +  D S+   ++  L K
Sbjct: 420 FMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCK 456



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK  ++  A ++ S M   G+K + +++ TL  G F     ERA  L +EM+  
Sbjct: 379 VMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNK 438

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I GLCK   + E+  L   +       +   Y+ ++D   K+G+   A
Sbjct: 439 GMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEA 498

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L H +P   L  +VVTY  +I GL   G + +A   F  M E  + PNV  + TLI G
Sbjct: 499 VALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDG 558

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +I   SK + L+++M +K +  D  + + ++D
Sbjct: 559 FCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLID 592



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 105/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK ++++ A +L  +M   G++P+ VI+ T+    F+  +   A  L  ++   G
Sbjct: 450 LIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDGLCK G I E++  F  +R L  + ++Q Y+ LIDG CK G L  A+
Sbjct: 510 LQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAV 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  D V Y+ +I G    G +  A  L   M E  +  ++  +   I GF
Sbjct: 570 HLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGF 629

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +N   +   +L +M    + PD +  + ++
Sbjct: 630 CNMNMMQEARGVLSEMIGTGITPDKTAYNCLI 661



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++ +CK   +  A+ L+++M  +G+ P+   + +L  G  +  +++ A  L DEM   G
Sbjct: 310 FVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT+ +DGLCK G +  + ++   +     + +   Y+ LI G   +   E AL
Sbjct: 370 LVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERAL 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +  DV  Y  +I GL    ++D+A  L   M++  + PN + + T++  F
Sbjct: 430 DLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAF 489

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + S+ + LLHK+ +  + P+      ++D L K
Sbjct: 490 FKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCK 526



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 5/240 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   ++ A+ L  EM+ +G+ P+VV +  +  GL +  +V  A  +   M+R G
Sbjct: 345 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAG 404

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+   YT  I G   N     +++L   ++    ELD+  Y  LI GLCK  +L+ A 
Sbjct: 405 VKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAK 464

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L H +    L  + V Y+ ++   +  G+  +A  L   + ++ + PNV+T+  LI G 
Sbjct: 465 SLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGL 524

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +     + I    KM+E  + P+  + + ++D   K    + SL S  VH   E VD+ 
Sbjct: 525 CKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCK----IGSL-SKAVHLMNEMVDKG 579



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+  NK  E AL+L +EM +KG++ DV ++ TL  GL ++ +++ A  L  +M   G
Sbjct: 415 LIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCG 474

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  YT  +D   K G   E+V L   +     + ++  Y  LIDGLCK+G +  A+
Sbjct: 475 LRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAI 534

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L  +V  Y+ +I G    G + KA  L  +M +  ++ + + + +LI G 
Sbjct: 535 SHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGH 594

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +      L  KM E  +  D
Sbjct: 595 MKQGDLQGAFALKAKMIETGLQLD 618



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 4/188 (2%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + P+    N + + L    Q     +LF+ +     A +  T+ I ID LCK G +VE+ 
Sbjct: 164 VPPNTRTCNHILLRLARNRQGGLVRRLFEHLP----APNVFTFNIVIDFLCKQGELVEAR 219

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  ++ + C  D+  Y+ LIDG  K G LE    L   + +    ADVVTY+ +I+  
Sbjct: 220 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCF 279

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G ++KA+  F +M+   V  NV+T  T +  F +     + ++L  +M+ + +MP+ 
Sbjct: 280 SKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNE 339

Query: 207 SIVSIVVD 214
              + +VD
Sbjct: 340 FTYTSLVD 347



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+V   N +   L +  ++  A  LF  M+  G + D  TY   IDG  K G + E   L
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +R   C  D+  Y+ LI+   K G +E A   F  + R  ++A+VVT S  +     
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G + +A  LF  M    + PN  T+ +L+ G  +       I LL +M  + ++P+   
Sbjct: 317 EGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 376

Query: 209 VSIVVDLLAK 218
            +++VD L K
Sbjct: 377 YTVMVDGLCK 386



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ + K  +   A+ L  ++   G++P+VV +  L  GL +   +  A   FD+M+  G
Sbjct: 485 IMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELG 544

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + + YT  IDG CK G + ++V L   +      LD   Y+ LIDG  K G L+ A 
Sbjct: 545 LDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAF 604

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D+  Y+  I G  N   M +A  +  +M    + P+   +  LI  +
Sbjct: 605 ALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKY 664

Query: 182 IRINEPSKVIELLHKMKE 199
            ++    +   L ++M+ 
Sbjct: 665 QKLGNMEEASSLQNEMES 682



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++  ++ +ID LCK G L  A  LF  +       DVVTY+ +I G    G++++   L 
Sbjct: 198 NVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLV 257

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +M ++  A +V+T+  LI+ F +     K      +MK   VM +   +S  VD   K 
Sbjct: 258 SEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKE 317

Query: 220 EISLNSLPSFT 230
            +   ++  F 
Sbjct: 318 GLVREAMKLFA 328


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 122/205 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK K I+ A+ L++EM+ +G+ P+ V +NTL  G  ++ ++  A  LF  M  +
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTN 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+I +DG CK GY+ ++  LFR ++    + ++  Y+ L+  +CKSG  + A
Sbjct: 438 GNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  L    L   V  Y+ +I+GL  +G +D+A + F +ME +   P+ I++  +I G
Sbjct: 498 RKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRG 557

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
            ++  + S+ + L+ +M+++  + D
Sbjct: 558 LLQHKDESRALLLVGEMRDRGFIAD 582



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E   A+ L+ +M++KG +PDV  +NT+  GL +I +   A  L  +M+  G
Sbjct: 169 LINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  ID LC++  + E++++F  ++      DI  Y+ LI GLCK  R + A 
Sbjct: 229 CQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEAS 288

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ D+VT+++++     +G++ +A  +   M E  V PNV+T+ +L++G+
Sbjct: 289 ALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  +  +L H M  K   P+    +I+++   K
Sbjct: 349 SLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCK 385



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C+++ +  AL+++S M +KGI PD+  + +L  GL +  + + A  L +EM    
Sbjct: 239 LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLN 298

Query: 62  VAADTRTYTIFIDGLCKNGYI-----------------------------------VESV 86
           +  D  T+ + +D  CK G +                                   VE+ 
Sbjct: 299 IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEAR 358

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF  +    C+ +I +Y+ LI+G CK+ R++ A++LF+ +    L  + V+Y+ +IHG 
Sbjct: 359 KLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGF 418

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++ +A DLF +M  N   P++ T+  L+ GF +     K   L   M+   + P+ 
Sbjct: 419 CQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNL 478

Query: 207 SIVSIVVDLLAKN 219
            + +I+V  + K+
Sbjct: 479 VMYTILVHAMCKS 491



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 109/210 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +N +C+ + ++   ++ ++++  G++P +V   TL  GL ++ +  +A +LFD+M   
Sbjct: 133 IFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAK 192

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GLCK G    +  L + +    C+ ++  YS LID LC+   +  A
Sbjct: 193 GCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEA 252

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  D+ TY+ +I GL    +  +A  L  +M    + P+++TF  L+  
Sbjct: 253 LDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDT 312

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           F +  + S+ + +L  M E  V P+    S
Sbjct: 313 FCKEGKVSEALGVLKTMTEMGVEPNVVTYS 342



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GY    ++  A  L+  M++KG KP++  +N L  G  +  +++ A +LF+EM   G
Sbjct: 344 LMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y   I G C+ G + E+ +LFR +       D+  YS L+DG CK G L  A 
Sbjct: 404 LTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAF 463

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++    L  ++V Y+I++H +   G    A  LF ++    + P+V  + T+I+G 
Sbjct: 464 RLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGL 523

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     + +E    M+     PD    ++++
Sbjct: 524 CKEGLLDEALEAFRNMEADGCPPDEISYNVII 555



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 106/203 (52%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           ++L  +M   G+ P++   +       ++ +V+  F +  ++ + G+     T+T  I+G
Sbjct: 113 ISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLING 172

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LCK G   ++VELF  +    C+ D+  Y+ +I+GLCK G    A  L   +       +
Sbjct: 173 LCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPN 232

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           +VTYS +I  L  D  +++A D+F  M+   ++P++ T+ +LI G  + +   +   LL+
Sbjct: 233 MVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLN 292

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +M   N+MPD    +++VD   K
Sbjct: 293 EMTSLNIMPDIVTFNVLVDTFCK 315



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 4/239 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +CK  ++  AL +   M   G++P+VV +++L  G      V  A KLF  M   
Sbjct: 308 VLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITK 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y I I+G CK   I E+++LF  +       +  +Y+ LI G C+ G+L  A
Sbjct: 368 GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREA 427

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF ++     + D+ TYSI++ G    G + KA  LF  M+   + PN++ +  L+H 
Sbjct: 428 QDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
             +        +L  ++  + + P   + + +++ L K  +   +L +F    R  E D
Sbjct: 488 MCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAF----RNMEAD 542



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  E   A  L  +M   G +P++V ++TL   L     V  A  +F  M+  G
Sbjct: 204 IINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKG 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TYT  I GLCK     E+  L   +  L    DI  ++ L+D  CK G++  AL
Sbjct: 264 ISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAL 323

Query: 122 -----------------------------------ELFHSLPRGVLVADVVTYSIMIHGL 146
                                              +LFH +       ++ +Y+I+I+G 
Sbjct: 324 GVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGY 383

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A  LF +M    + PN +++ TLIHGF ++ +  +  +L   M     +PD 
Sbjct: 384 CKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDL 443

Query: 207 SIVSIVVDLLAKN 219
              SI++D   K 
Sbjct: 444 FTYSILLDGFCKQ 456



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK   +  A  L+  M S  +KP++V++  L   + +    + A KLF E+   
Sbjct: 448 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQ 507

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+    + YT  I+GLCK G + E++E FR +    C  D  +Y+ +I GL +      A
Sbjct: 508 GLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRA 567

Query: 121 LELFHSLPRGVLVADV 136
           L L   +     +ADV
Sbjct: 568 LLLVGEMRDRGFIADV 583



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 74/145 (51%)

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + L + + ++    +I   S  ++  C+  R+++   +   + +  L   +VT++ +I+G
Sbjct: 113 ISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLING 172

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+  +A +LF DM      P+V T+ T+I+G  +I E +    LL KM+E    P+
Sbjct: 173 LCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPN 232

Query: 206 ASIVSIVVDLLAKNEISLNSLPSFT 230
               S ++D L ++ +   +L  F+
Sbjct: 233 MVTYSTLIDSLCRDRLVNEALDIFS 257



 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL  +  M + G  PD + +N +  GL +     RA  L  EM+  G
Sbjct: 519 IINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRG 578

Query: 62  VAADTR 67
             AD R
Sbjct: 579 FIADVR 584


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 2/215 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +ING+CK  E++ A  +  EM+++ GI PDVV + ++  GL    +++RA ++  EM+  
Sbjct: 83  VINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLK 142

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRT-LRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV  D  T++  I G C    + E+++L++  L     + D+  Y+ LIDG CKSG LE 
Sbjct: 143 GVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEK 202

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+++   +     V +VVTYS ++HGL   G +D+A DLF  M      PNV+T+ TLIH
Sbjct: 203 AMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIH 262

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G    ++      L+ +M      PD    + ++D
Sbjct: 263 GLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ AL+L+  M SKG  P+VV + TL  GL   H+V+ A  L DEM    
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT +Y   +DG C+ G I E+ +LF+ +    C  D   Y+CL+ G C + RLE A 
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344

Query: 122 ELFHSLPRGVLV-ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L  ++     +  DVVTYSI++ G     +  +A +   +M    VAPN +T+ +LI G
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDG 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       +E+L  M  K V P     + V+  L +
Sbjct: 405 LCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCR 442



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQRD 60
           +++G C++ +++ A  +  EM  KG++PD    + L  G     +V+ A KL+ E +   
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSS 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYT  IDG CK+G + +++++   +   KC  ++  YS L+ GLCK+G L+ A
Sbjct: 179 SWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 238

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  +     V +VVTY+ +IHGL    ++D A  L  +M      P+ +++  L+ G
Sbjct: 239 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDG 298

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R+    +  +L  +M  K+ +PD
Sbjct: 299 YCRLGRIEEAKQLFKEMATKSCLPD 323



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G+C  ++++ AL LY E+L S   KPDVV +  L  G  +   +E+A K+   M+  
Sbjct: 154 LITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGR 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL---------------------------- 92
               +  TY+  + GLCK G + ++++LFR +                            
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 273

Query: 93  RILK-------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           R+L        C  D  +Y+ L+DG C+ GR+E A +LF  +     + D +TY+ ++ G
Sbjct: 274 RLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRG 333

Query: 146 LYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
             N  ++++A  L  +M+  A + P+V+T+  ++ G+ R     +  E + +M  +NV P
Sbjct: 334 FCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAP 393

Query: 205 DASIVSIVVDLLAK 218
           +A   S ++D L K
Sbjct: 394 NAVTYSSLIDGLCK 407



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L++GYC+   IE A  L+ EM +K   PD + +  L  G     ++E A  L + M+   
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+I + G  +    VE+ E  + +       +   YS LIDGLCK+GR++ A
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHA 414

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+  ++    +   V T++ +I  L   G MD+A  L + M  + + P ++T+ TL+ G
Sbjct: 415 MEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEG 474

Query: 181 FIRINEPSKVIELLHKMK--------EKNVMPDASIVSIVVDLLAKNEI 221
           F R        EL   M+          N++P+ +  +++  L    EI
Sbjct: 475 FSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREI 523



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+CK  +++ AL  + +M  + + P+   +N +  GL +     +A+++  EM RD
Sbjct: 12  IIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEM-RD 69

Query: 61  G--VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRL 117
           G  VA D  TY+  I+G CK G +  + E+ R +        D+  Y+ ++DGLC+ G++
Sbjct: 70  GKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKM 129

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGT 176
           + A E+   +    +  D  T+S +I G  N  ++D+A  L+ + +  ++  P+V+T+  
Sbjct: 130 DRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTA 189

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           LI GF +     K +++L  M+ +  +P+    S ++  L K
Sbjct: 190 LIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCK 231



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 106/195 (54%), Gaps = 4/195 (2%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           +P VV    +  G  + +Q+++A   F++M R+ VA + RTY + ++GLCK     ++ E
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 88  LFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHG 145
           + + +R  K    D+  YS +I+G CK G ++ A E+   +  R  +  DVVTY+ ++ G
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK-MKEKNVMP 204
           L  DG+MD+A ++  +M+   V P+  TF  LI G+    +  + ++L  + +   +  P
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 205 DASIVSIVVDLLAKN 219
           D    + ++D   K+
Sbjct: 183 DVVTYTALIDGFCKS 197



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 76/127 (59%), Gaps = 3/127 (2%)

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           ++C+  +  ++ +IDG CK+ +L+ AL  F  + R  +  +  TY+++++GL       K
Sbjct: 1   MECQPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSK 59

Query: 155 AHDLFLDMEEN-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN-VMPDASIVSIV 212
           A+++  +M +  +VAP+++T+ T+I+GF +  E  +  E+L +M  ++ + PD    + V
Sbjct: 60  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSV 119

Query: 213 VDLLAKN 219
           VD L ++
Sbjct: 120 VDGLCRD 126



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 7/206 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ GY + K    A     EM+++ + P+ V +++L  GL +  +V+ A ++   M   
Sbjct: 365 IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNK 424

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     T+   I  LC+ G + E+ +L   +     E  +  Y+ L++G  ++GR+EIA
Sbjct: 425 RVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIA 484

Query: 121 LELFHSLPRGVLVADVV-------TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            ELF  + +    +           +S +I GL    ++DKA  +  ++      P    
Sbjct: 485 YELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEED 544

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKE 199
              ++ G +R     +  +L++ + +
Sbjct: 545 CLAIVDGLLRAGRTEEAGKLINSISK 570


>gi|224137548|ref|XP_002322585.1| predicted protein [Populus trichocarpa]
 gi|222867215|gb|EEF04346.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 19/224 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK   I+ A  L+ EM  +G+ P+   +NTL  GLF++ ++  A +LF +M   
Sbjct: 15  ILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEAKELFKDMHAQ 74

Query: 61  GVAADTRTYTIFIDGLCK----NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           G + D  TY+I +DGL K    N Y+                 D+  Y+ LID +CKSG+
Sbjct: 75  GCSPDLVTYSILLDGLSKQEMQNNYL---------------NPDLVIYNILIDAMCKSGK 119

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           LE A ELF  L    L+ DV +++ +I GL  +G +D+A+  F  ME +   P+  ++  
Sbjct: 120 LEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNV 179

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++ GF++ N  S+  +L  +M ++    DA   ++  DLL+K++
Sbjct: 180 IVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSKDD 223



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 70/128 (54%), Gaps = 11/128 (8%)

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           + +  C  ++ +Y+ LI+G CK+ R++ A +LF  +    L+ +  +Y+ +I GL+  G+
Sbjct: 1   MHVQGCMPNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGR 60

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           + +A +LF DM     +P+++T+  L+ G  +            +M+   + PD  I +I
Sbjct: 61  ILEAKELFKDMHAQGCSPDLVTYSILLDGLSK-----------QEMQNNYLNPDLVIYNI 109

Query: 212 VVDLLAKN 219
           ++D + K+
Sbjct: 110 LIDAMCKS 117



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           + +V++Y+I+I+G     ++D+A  LF +M    + PN  ++ TLI G  ++    +  E
Sbjct: 7   MPNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEAKE 66

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL-PSFTVH 232
           L   M  +   PD    SI++D L+K E+  N L P   ++
Sbjct: 67  LFKDMHAQGCSPDLVTYSILLDGLSKQEMQNNYLNPDLVIY 107


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK + I+ A +L  EML  G  PDVV +NT+  GLF+  +   A +L+  M    
Sbjct: 599 LLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSR 658

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ++GLCKN  + E+ ++F++L     +L I  ++ +I  L K G+ E A+
Sbjct: 659 TQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAM 718

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++    LV DV TY ++   L  +G +++   LF  MEEN  APN      L+  F
Sbjct: 719 DLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRF 778

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
           +   + S+    L K+ EKN   +AS  S+++ L ++ E      SLP
Sbjct: 779 LHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGEYQQLAKSLP 826



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           ILI  +C+   +E    ++  +L  G + + ++ N L  GL +  +++ A   L   M  
Sbjct: 200 ILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPE 259

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   +  +Y   + G C      E++EL   +   + L C  D+ +Y+ +I+G  + G+
Sbjct: 260 FGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQ 319

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A  LF  +    +  DVVTY+ +I GL     +D+A  +F  M +  V P+  T+  
Sbjct: 320 VDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNC 379

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LIHG++   +  +V+ LL +M   ++ PD  I ++++D L KN
Sbjct: 380 LIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKN 422



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ +  +++ A NL+ +M+ +GI PDVV +NT+  GL +   V+RA  +F +M   G
Sbjct: 310 VINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY   I G    G   E V L   +     E D   Y+ L+D LCK+GR   A 
Sbjct: 370 VKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEAR 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F S+ R               G+  D  +D+A  +F  M +  ++PNV+ +G LI   
Sbjct: 430 NIFDSVIR--------------KGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDAL 475

Query: 182 IRINEPSKVIELLHKM 197
            ++      I   ++M
Sbjct: 476 CKLGRVDDAILKFNQM 491



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 108/216 (50%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           + G C  ++ E A  L  EML +GI+ DVV+ NTL   L    +V  A +L + M R GV
Sbjct: 495 VYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGV 554

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  +Y   +DG C  G   E+ +L   +  +  + +   Y+ L+ G CK+ R++ A  
Sbjct: 555 RPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYS 614

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L   +       DVVTY+ ++HGL+  G+  +A +L+L+M  +    ++ T+  +++G  
Sbjct: 615 LLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLC 674

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + N   +  ++   +  K +       +I++  L K
Sbjct: 675 KNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLK 710



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 44/263 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFI--------------------- 39
           +L++  CKN     A N++  ++ KGIKPD +I   + I                     
Sbjct: 414 LLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALID 473

Query: 40  -----------------------GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
                                  GL  + + E+A +L  EM   G+  D   +   +  L
Sbjct: 474 ALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDL 533

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C+ G ++E+  L   +  +    D+ +Y+ L+DG C +GR + A +L   +    L  + 
Sbjct: 534 CREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNE 593

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            TY+ ++HG     ++D A+ L  +M  N   P+V+T+ T++HG  +    S+  EL   
Sbjct: 594 FTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLN 653

Query: 197 MKEKNVMPDASIVSIVVDLLAKN 219
           M       D    +I+++ L KN
Sbjct: 654 MINSRTQWDMYTYNIILNGLCKN 676



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 13/220 (5%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFI------GLFEIHQVERAFKLFDEMQR---DGVAAD 65
           AL L+  +L       V   N L        G     + +    LFD M R   D VA D
Sbjct: 135 ALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAPD 194

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE-LF 124
             TY+I I   C+ G +     +F  +      ++   ++ L+ GLC + RL+ A   L 
Sbjct: 195 RCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILL 254

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN---AVAPNVITFGTLIHGF 181
             +P      +VV+Y+ ++ G  N+ + ++A +L   M ++   +  P+V+++ T+I+GF
Sbjct: 255 WRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            R  +  K   L  +M ++ + PD    + V+D L K ++
Sbjct: 315 FREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQV 354



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 6/212 (2%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C  K ++ A N L   M   G  P+VV +NTL  G    ++ E A +L   M  D
Sbjct: 236 LLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADD 295

Query: 61  ---GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
                  D  +Y   I+G  + G + ++  LF  +       D+  Y+ +IDGLCK+  +
Sbjct: 296 QGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVV 355

Query: 118 EIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A  +F   L +GV  ++  TY+ +IHG  + G+  +   L  +M  + + P+   +  
Sbjct: 356 DRAKAVFQQMLDKGVKPSNG-TYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYAL 414

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           L+    +    ++   +   +  K + PDA I
Sbjct: 415 LLDYLCKNGRCTEARNIFDSVIRKGIKPDAMI 446



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CKN  ++ A  ++  + SKG++  ++  N +   L +  + E A  LF  +   
Sbjct: 668 IILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAY 727

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+  D  TY +  + L K G + E   LF  +
Sbjct: 728 GLVPDVETYCLIAENLIKEGSLEELGVLFSAM 759


>gi|414591617|tpg|DAA42188.1| TPA: hypothetical protein ZEAMMB73_899186 [Zea mays]
          Length = 265

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 121/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML KGIKP  +++N +  GLF+  +   A   F EM   G
Sbjct: 26  LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFQDGRTVPAKVKFHEMTESG 85

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY I + GL KN    E++ LF+ LR +  +++I   + +I G+ ++ R+E A 
Sbjct: 86  IAMDKYTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAK 145

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV  VVTYSIMI  L  +G +++A D+F  M+     PN      ++   
Sbjct: 146 DLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVREL 205

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 206 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFS 241



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G  KN+  + A+ L+ E+ +  +K +++  NT+  G+F+  +VE A  LF  + R 
Sbjct: 95  IVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRS 154

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE 98
           G+     TY+I I  L K G + E+ ++F +++   CE
Sbjct: 155 GLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 192


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 127/235 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C+   +  AL +  EM+  G  PDVV +NTL  GL + H++  A +L +EM+  
Sbjct: 337 MVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKER 396

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I G C++G   ++++LF TL   +   D+ AY+ LIDG+C+ G L  A
Sbjct: 397 GVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKA 456

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +  + VTYSI+I      GQ+++A     +M      PN++T+ ++I G
Sbjct: 457 NELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKG 516

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           + R     K  + L KM + N++PD    + ++    K E    +   F + E++
Sbjct: 517 YCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE 571



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQR 59
           ILI G+C+  E+E A+  Y EM  +G+ PDVV  + L IGLF    +++ A     EM+ 
Sbjct: 267 ILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCL-IGLFSTRGKMDHAAAYLREMKG 325

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT+ I G C+ G + E++ +   +  L C  D+  Y+ L++GLCK  RL  
Sbjct: 326 LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLD 385

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A EL + +    +  D+ T++ +IHG   DG  +KA  LF  +    + P+V+ + +LI 
Sbjct: 386 AEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLID 445

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  R  + +K  EL   M  + + P+    SI++D
Sbjct: 446 GMCRKGDLAKANELWDDMHAREIFPNHVTYSILID 480



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ YCK+ E + A  + SEM  + + PDVV HN L    F    V+ A  L D M   
Sbjct: 162 IMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANK 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T+   + GLCK+    ++ E+FR +       D+++++ LI G C+ G +E A
Sbjct: 222 GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++ +  + +  +  DVV++S +I      G+MD A     +M+   + P+ + +  +I G
Sbjct: 282 MKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           F R    S+ + +  +M     +PD    + +++ L K    L++
Sbjct: 342 FCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDA 386



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 115/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+   +  +++ A+ L   M +KG+KP +V  N++  GL +  + ++A ++F  M + 
Sbjct: 197 VLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQC 256

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            VA D R++ I I G C+ G + E+++ ++ ++      D+ ++SCLI      G+++ A
Sbjct: 257 SVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHA 316

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 +    LV D V Y+++I G    G M +A  +  +M      P+V+T+ TL++G
Sbjct: 317 AAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNG 376

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             + +      ELL++MKE+ V PD    + ++
Sbjct: 377 LCKQHRLLDAEELLNEMKERGVTPDLCTFTTLI 409



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 35/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
           LI+GYC++   E AL L+  +L + ++PDVV +N+L  G+                    
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 42  -FEIH--------------QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
            F  H              QVE AF   DEM   G   +  TY   I G C++G + +  
Sbjct: 468 IFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQ 527

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +  + +       D+  ++ LI G  K   +  A  +F+ + + ++  D VTY+++I+G 
Sbjct: 528 QFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGF 587

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              G M++A  +F  M  + + P+  T+ +LI+G +      +  +L  +M  +   PD
Sbjct: 588 SEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 79/170 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+  ++E A     EM+SKG  P+++ +N++  G      V++  +   +M +D
Sbjct: 477 ILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQD 536

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T+   I G  K   +  +  +F  +     + D   Y+ +I+G  + G +E A
Sbjct: 537 NILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEA 596

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             +F  +    +  D  TY  +I+G    G   +A  L  +M     AP+
Sbjct: 597 GRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 96/235 (40%), Gaps = 39/235 (16%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           S +L+    P   + + L     +  +   AF+ F  +    V          +  L + 
Sbjct: 76  SSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRA 135

Query: 80  GYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           G+   + E +R   +L  + ++ AY+   ++   CKS   + A  +   + +  +  DVV
Sbjct: 136 GWPHLAEEAYRL--VLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVV 193

Query: 138 TYSIMIHGLYNDG-----------------------------------QMDKAHDLFLDM 162
           T++++I   +  G                                   + DKA ++F  M
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAM 253

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ +VAP+V +F  LI GF R+ E  + ++   +M+++ V PD    S ++ L +
Sbjct: 254 DQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFS 308



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING+ +   +E A  ++ +M + GI+PD   + +L  G       + AF+L DEM   
Sbjct: 582 MIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHR 641

Query: 61  GVAADTR 67
           G A D +
Sbjct: 642 GFAPDDK 648



 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD----VVTY 139
           E+ E FR L   +  +   A + L+  L ++G   +A E +    R VL +D      T 
Sbjct: 105 EAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEAY----RLVLSSDSEVNAYTL 160

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +IM+H      + DKA  +  +ME+  V P+V+T   LI    R  +    I L+  M  
Sbjct: 161 NIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMAN 220

Query: 200 KNVMPDASIVSIVVDLLAKNE 220
           K + P     + V+  L K+ 
Sbjct: 221 KGLKPGIVTFNSVLKGLCKHR 241


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK +    A +L  EM+  G  PD+  + TL  G  +  + + A ++F+++   G
Sbjct: 60  LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 119

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              D  TY+  IDGLCK G + E+++LF R ++   C  +   Y+ LI G C+ G+++ A
Sbjct: 120 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 179

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       DVVTY+ +++G     ++D A+DL   M    + PNV+TF +L+ G
Sbjct: 180 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDG 239

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R N  S  + +L +M+ K+  P     + ++D
Sbjct: 240 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 273



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 109/196 (55%), Gaps = 2/196 (1%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P  V +N+L  GL +  +   A+ L +EM   G   D  TYT  I G CK+    +++ +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR-GVLVADVVTYSIMIHGLY 147
           F  L       D+  YSCLIDGLCK GRL+ A++LF  + + G  + + VTY+ +I G  
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G+MD+A +L   M E   +P+V+T+ TL++GF ++       +LL++M  K + P+  
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 208 IVSIVVDLLAK-NEIS 222
             + ++D L + N +S
Sbjct: 232 TFTSLMDGLCRENRLS 247



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 128/253 (50%), Gaps = 34/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+K+ + AL ++ +++++G +PDVV ++ L  GL +  +++ A  LF  M + G
Sbjct: 95  LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 154

Query: 62  VA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T TY   I G C+ G + E++ L   +       D+  Y+ L++G CK  RL+ A
Sbjct: 155 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 214

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA------------------HDLFLD- 161
            +L + + R  L  +VVT++ ++ GL  + ++  A                  ++  LD 
Sbjct: 215 YDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 274

Query: 162 --------------MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
                         +EE    PNV++F  +I G  ++N  S+ +EL+ + + +   PD  
Sbjct: 275 YCRVNQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 334

Query: 208 IVSIVVDLLAKNE 220
           + + V+D+L + +
Sbjct: 335 MYTTVIDVLCREK 347



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 109/210 (51%), Gaps = 11/210 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+  +++ A+NL   M   G  PDVV + TL  G  ++ +++ A+ L ++M R G
Sbjct: 166 LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           +  +  T+T  +DGLC+   + ++V +   +R   C   +  Y+ ++DG C+  +LE A 
Sbjct: 226 LTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 121 ---LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              LE     P      +VV+++IMI GL    +  +A +L  +       P+V+ + T+
Sbjct: 286 KFMLEEMDCPP------NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTV 339

Query: 178 IHGFIRINEPSKVIELLHKM-KEKNVMPDA 206
           I    R  +  +   +  KM +E   +P++
Sbjct: 340 IDVLCREKKVDEACRVYRKMLEEPGCLPNS 369



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%)

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           V   VTY+ +I GL    +  +A+DL  +M  +   P++ T+ TLI GF +  +    + 
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  ++  +   PD    S ++D L K
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCK 136


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG C  + +      + EMLSKG++PD   +NT       I  +  AF+L +EM   
Sbjct: 445 ILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLR 504

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+++DT TY + IDGLCK G + ++  L+  +      LD   Y+CLI   C+ GRL  A
Sbjct: 505 GISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEA 564

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L   VVTY+I IH     G +  A+  F  M E  V PN +T+  L+H 
Sbjct: 565 KNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHA 624

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R+       +  H+M E+ ++P+    ++++D
Sbjct: 625 LCRMGRTESAYQHFHEMLERGLVPNKYTYTLLID 658



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GYC+  ++EGA  L  EM  +   PDV  +  L  G   +  +      FDEM   
Sbjct: 410 ILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSK 469

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I      G I  + +L   + +     D   Y+ LIDGLCK+G L+ A
Sbjct: 470 GLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDA 529

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  +    L  D VTY+ +IH     G++ +A ++F  M  + ++P+V+T+   IH 
Sbjct: 530 YVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHT 589

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R            KM E+ V P+    ++++  L +
Sbjct: 590 YCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCR 627



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 103/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G      +E A  L  EM ++GI P VV +NTL  GLF+    E A   FDEM+  G
Sbjct: 306 LITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKG 365

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+G CK G + +++ LF  L+       +  Y+ LIDG C+ G LE A 
Sbjct: 366 LLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGAR 425

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + DV TY+I+++G      +      F +M    + P+   + T I   
Sbjct: 426 RLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAE 485

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + I   +   +L  +M  + +  D    ++++D L K 
Sbjct: 486 LTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKT 523



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++ING  +  E+E A  L   M LSK  K     +N L  GL     VE+A  L  EM+ 
Sbjct: 271 VVINGLARKGELEKAAQLVDIMRLSK--KASAFTYNPLITGLLARDFVEKAGALLLEMEN 328

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G+     TY   IDGL K G    +   F  +R      D+  Y+ LI+G CK+G L+ 
Sbjct: 329 EGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQ 388

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL LF  L R  L   V+TY+I+I G    G ++ A  L  +M E    P+V T+  L++
Sbjct: 389 ALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMN 448

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G   +   + V     +M  K + PD
Sbjct: 449 GSCMVRNLAMVRIFFDEMLSKGLEPD 474



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   ++ A  L+ +M++ G++ D V +  L     E  ++  A  +FD M   
Sbjct: 515 VLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVAS 574

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++    TYTIFI   C+ G +  +   FR +     E +   Y+ L+  LC+ GR E A
Sbjct: 575 GLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESA 634

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + FH +    LV +  TY+++I G   +G    A  L+ +M +  + P+  T   L  G
Sbjct: 635 YQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKG 694

Query: 181 F 181
           F
Sbjct: 695 F 695



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 3/199 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD--GVAADTRTYTIFIDG 75
           +YS+ML  G++P +  +NTL     +  ++++A  L  +M+    G   +  TY + I+G
Sbjct: 216 VYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVING 275

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + G + ++ +L   +R+ K +     Y+ LI GL     +E A  L   +    +V  
Sbjct: 276 LARKGELEKAAQLVDIMRLSK-KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPT 334

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTY+ +I GL+  G  + A   F +M    + P++IT+ +LI+G+ +     + + L  
Sbjct: 335 VVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFG 394

Query: 196 KMKEKNVMPDASIVSIVVD 214
            +K   + P     +I++D
Sbjct: 395 DLKRAGLGPTVLTYNILID 413



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 3/192 (1%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L+ + EM   G+ P V   N +   L +  + +    ++ +M + GV     TY   +D 
Sbjct: 179 LSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDS 238

Query: 76  LCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
            CK G + ++V L + +  R   C  +   Y+ +I+GL + G LE A +L   + R    
Sbjct: 239 FCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIM-RLSKK 297

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
           A   TY+ +I GL     ++KA  L L+ME   + P V+T+ TLI G  +          
Sbjct: 298 ASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVK 357

Query: 194 LHKMKEKNVMPD 205
             +M+ K ++PD
Sbjct: 358 FDEMRAKGLLPD 369



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 87/196 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K    E A   + EM +KG+ PD++ +N+L  G  +   +++A  LF +++R G
Sbjct: 341 LIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAG 400

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY I IDG C+ G +  +  L   +    C  D+  Y+ L++G C    L +  
Sbjct: 401 LGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVR 460

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L  D   Y+  I      G +  A  L  +M    ++ + +T+  LI G 
Sbjct: 461 IFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGL 520

Query: 182 IRINEPSKVIELLHKM 197
            +         L  KM
Sbjct: 521 CKTGSLKDAYVLWMKM 536



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 25/45 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH 45
           +LI+G CK      A+ LY EM  KGI PD   HN LF G  E H
Sbjct: 655 LLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGFGEGH 699



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA--PNVITFGTLIHGFIRINEPSKVIE 192
            + TY+ ++      G+MD+A  L  DME  A    PN +T+  +I+G  R  E  K  +
Sbjct: 228 SIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQ 287

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L+  M+        +   ++  LLA++
Sbjct: 288 LVDIMRLSKKASAFTYNPLITGLLARD 314


>gi|297726211|ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group]
 gi|255678284|dbj|BAH94197.1| Os08g0248500 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 130/228 (57%), Gaps = 2/228 (0%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LINGYCK   +E AL+L+ +M+  G+ P+++ +N +  GLF+  Q   A +++  + + G
Sbjct: 1248 LINGYCKISRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRG 1307

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  +  T  I + GLCKN    E++++F+ L ++  +L+ + ++ +I  L +SGR + + 
Sbjct: 1308 IQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESK 1367

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +LF +L    L  DVVTY++MI  L  DG ++++ +LFL ME+N   PN      ++   
Sbjct: 1368 DLFAALSANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKL 1427

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS--LNSLP 227
            ++  E  +    L K+ + +   +AS   +++ L++  + +  +  LP
Sbjct: 1428 LQKGEIGRAGVYLSKIDKNDFSLEASTAELLILLVSSGKYNQHMKGLP 1475



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 36/228 (15%)

Query: 30   DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
            DV+ ++TL  G     +++ A KL  +M   G+  DT TY+  I+G CK   +  ++ LF
Sbjct: 1206 DVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLF 1265

Query: 90   RTL---------------------------------RILK--CELDIQAYSCLIDGLCKS 114
            R +                                 RI+K   +L+I   + ++ GLCK+
Sbjct: 1266 RQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLCKN 1325

Query: 115  GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
                 AL++F +L    +  +  T++IMI  L   G+ D++ DLF  +  N +AP+V+T+
Sbjct: 1326 NLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLAPDVVTY 1385

Query: 175  GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEI 221
              +I   I      +   L   M++   +P++ +++ IV  LL K EI
Sbjct: 1386 TLMIENLIEDGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKLLQKGEI 1433



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 76/140 (54%)

Query: 90   RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
            RT +    E+D+  YS LIDG C +G+++ A++L   +    L  D VTYS +I+G    
Sbjct: 1196 RTEQAHPSEVDVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKI 1255

Query: 150  GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
             +M+ A  LF  M  N V+PN+IT+  ++ G  +  +     E+  ++ ++ +  + S  
Sbjct: 1256 SRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTC 1315

Query: 210  SIVVDLLAKNEISLNSLPSF 229
            +IV+  L KN ++  +L  F
Sbjct: 1316 NIVLQGLCKNNLTGEALQMF 1335


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 128/238 (53%), Gaps = 1/238 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CKN+ +  A+ ++++M   GI+P+VV +N+L  GL EI +   A  L  +M + G
Sbjct: 193 LIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRG 252

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  ID   K G I+E+ EL++ +  +    D+  Y+ LI+GLC  GRL+ A 
Sbjct: 253 IQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEAR 312

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ +       + VTY+ +IHG     +++    +F +M +  +  N IT+  LI G+
Sbjct: 313 QMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGY 372

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
             +  P    E+ ++M  +   PD    ++++D L  N     +L  F  + R+ E+D
Sbjct: 373 CLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFK-YMRKREMD 429



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 115/207 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    ++ A  ++  M S G  P+ V + TL  G  +  +VE   K+F EM + G
Sbjct: 298 LINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKG 357

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+T TYT+ I G C  G    + E+F  +   +   DI+ Y+ L+DGLC +G +E AL
Sbjct: 358 LVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKAL 417

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  ++VTY+I+I G+   G+++ A DLF  +    + PNVIT+ T+I GF
Sbjct: 418 MIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGF 477

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASI 208
            R     +   L  KMKE   +P+ S+
Sbjct: 478 CRRGFIHEADALFKKMKEDGFLPNESV 504



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 117/213 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C    IE AL L+ +++  G +P+VV + TL   L +   +  A ++F++M  +G
Sbjct: 158 LLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   + GLC+ G   ++  L R +     + ++  ++ LID   K G++  A 
Sbjct: 218 IRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAK 277

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  + +  +  DV TY+ +I+GL   G++D+A  +F  ME N   PN +T+ TLIHGF
Sbjct: 278 ELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGF 337

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +        ++ ++M +K ++ +    ++++ 
Sbjct: 338 CKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQ 370



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL NG   N +   AL+L++ M+     P +V    L   + ++ + +    LF++MQ  
Sbjct: 53  ILRNGL-HNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQIL 111

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++    T  I ++ +C++     +      +  L  E D+  ++ L+ G C   R+E A
Sbjct: 112 GISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDA 171

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +       +VVTY+ +IH L  +  ++ A ++F  M +N + PNV+T+ +L+ G
Sbjct: 172 LALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSG 231

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              I   S    LL  M ++ + P+    + ++D   K
Sbjct: 232 LCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVK 269



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 102/210 (48%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K  +  ++L+ +M   GI P +   N +   +    Q  RA     +M + G   D  
Sbjct: 94  KMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLV 153

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+T  + G C    I +++ LF  +  +    ++  Y+ LI  LCK+  L  A+E+F+ +
Sbjct: 154 TFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM 213

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  +VVTY+ ++ GL   G+   A  L  DM +  + PNVITF  LI  F+++ + 
Sbjct: 214 GDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKI 273

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +  EL   M + +V PD    + +++ L 
Sbjct: 274 MEAKELYKVMIQMSVYPDVFTYTALINGLC 303



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 68/127 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI GYC     + A  ++++M S+   PD+  +N L  GL     VE+A  +F  M++ 
Sbjct: 367 VLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKR 426

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TYTI I G+CK G + ++ +LF +L     + ++  Y+ +I G C+ G +  A
Sbjct: 427 EMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEA 486

Query: 121 LELFHSL 127
             LF  +
Sbjct: 487 DALFKKM 493



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C N  +E AL ++  M  + +  ++V +  +  G+ ++ +VE AF LF  +   
Sbjct: 402 VLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSK 461

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  +  TYT  I G C+ G+I E+  LF+ ++
Sbjct: 462 GMKPNVITYTTMISGFCRRGFIHEADALFKKMK 494



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G CK  ++E A +L+  + SKG+KP+V+ + T+  G      +  A  LF +M+ D
Sbjct: 437 IIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKED 496

Query: 61  G 61
           G
Sbjct: 497 G 497



 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 61/137 (44%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E+++LF  +   +    I  ++ L+  + K  R ++ + LF  +    +   + T +I++
Sbjct: 65  EALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVM 124

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           + +    Q  +A      M +    P+++TF +L+HGF   N     + L  ++      
Sbjct: 125 NCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFR 184

Query: 204 PDASIVSIVVDLLAKNE 220
           P+    + ++  L KN 
Sbjct: 185 PNVVTYTTLIHCLCKNR 201


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 121/214 (56%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  ++  A  +  EM+S+GI PD VI+ TL  G  ++  V  A++LFDEMQ+  ++ D 
Sbjct: 234 CKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDF 293

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I GLC+ G ++E+ +LF  +   + E D   Y+ LIDG CK G+++ A  L + 
Sbjct: 294 ITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 353

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  ++VTY+ +  GL   G++D A++L  +M    +  N+ T+ +L++G  +   
Sbjct: 354 MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN 413

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + ++L+  M+     PDA   + ++D   K+ 
Sbjct: 414 IDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 447



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 113/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +  A  L+ EM  + I PD + +  +  GL +  +V  A KLF EM    
Sbjct: 264 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G + E+  L   +  +    +I  Y+ L DGLCK G ++ A 
Sbjct: 324 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H + R  L  ++ TY+ +++GL   G +D+A  L  DME     P+ +T+ TL+  +
Sbjct: 384 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  E  +  ELL +M ++ + P     +++++
Sbjct: 444 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 476



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  +++ A +L+++ML  G+ P++V +  L  GL +  +V+ A +L  EM R G
Sbjct: 334 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ++GLCK G I ++V+L + + +     D   Y+ L+D  CKS  +  A 
Sbjct: 394 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L   VVT++++++G    G ++    L   M E  + PN  T+ +LI  +
Sbjct: 454 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 513

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N      E+   M  K V+PD +  +I++
Sbjct: 514 CIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 545



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+   +  A  L+ EM+ K ++PD V +  L  G  +  +++ AF L ++M + G
Sbjct: 299 VICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT   DGLCK G +  + EL   +     EL+I  Y+ L++GLCK+G ++ A+
Sbjct: 359 LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAV 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       D VTY+ ++       +M +AH+L   M +  + P V+TF  L++GF
Sbjct: 419 KLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                     +LL  M EK +MP+A+  + ++
Sbjct: 479 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 510



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 107/206 (51%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E  L L  EM  KG+KP+   +N + + L +  +V  A ++  EM  +G+A D   YT  
Sbjct: 205 EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 264

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           IDG CK G +  +  LF  ++  K   D   Y+ +I GLC++GR+  A +LFH +    L
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 324

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             D VTY+ +I G   +G+M +A  L   M +  + PN++T+  L  G  +  E     E
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 384

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           LLH+M  K +  +    + +V+ L K
Sbjct: 385 LLHEMCRKGLELNIYTYNSLVNGLCK 410



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 35/249 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  E++ A  L  EM  KG++ ++  +N+L  GL +   +++A KL  +M+  G
Sbjct: 369 LADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--- 118
              D  TYT  +D  CK+  +V + EL R +   + +  +  ++ L++G C SG LE   
Sbjct: 429 FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 488

Query: 119 --------------------------------IALELFHSLPRGVLVADVVTYSIMIHGL 146
                                              E++  +    +V D  TY+I+I G 
Sbjct: 489 KLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 548

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                M +A  L  DM        V ++  LI GF +  +  +  EL  +M+ + ++ D 
Sbjct: 549 CKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADR 608

Query: 207 SIVSIVVDL 215
            I +I  D+
Sbjct: 609 EIYNIFADI 617



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF-KLFDEMQR 59
           +L+NG+C +  +E    L   ML KGI P+   +N+L I  + I    RA  +++  M  
Sbjct: 473 VLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL-IKQYCIRNNMRATTEIYRGMCA 531

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  D  TY I I G CK   + E+  L R +      L + +Y+ LI G  K  +   
Sbjct: 532 KGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLE 591

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           A ELF  + R  LVAD   Y+I     Y++G+M+   +L  +  E  +  ++ T  T
Sbjct: 592 ARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT 648



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 42/214 (19%)

Query: 47  VERAFKLFD------------------------------------------EMQRDGVAA 64
           V  A KLFD                                          EMQ  G+  
Sbjct: 162 VSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKP 221

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           +  TY   I  LCK G + E+  + R +       D   Y+ LIDG CK G +  A  LF
Sbjct: 222 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLF 281

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             + +  +  D +TY+ +I GL   G++ +A  LF +M    + P+ +T+  LI G+ + 
Sbjct: 282 DEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKE 341

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +   L ++M +  + P+    + + D L K
Sbjct: 342 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 375


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 121/214 (56%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  ++  A  +  EM+S+GI PD VI+ TL  G  ++  V  A++LFDEMQ+  ++ D 
Sbjct: 334 CKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDF 393

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I GLC+ G ++E+ +LF  +   + E D   Y+ LIDG CK G+++ A  L + 
Sbjct: 394 ITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 453

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  ++VTY+ +  GL   G++D A++L  +M    +  N+ T+ +L++G  +   
Sbjct: 454 MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN 513

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + ++L+  M+     PDA   + ++D   K+ 
Sbjct: 514 IDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 547



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 113/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +  A  L+ EM  + I PD + +  +  GL +  +V  A KLF EM    
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G + E+  L   +  +    +I  Y+ L DGLCK G ++ A 
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H + R  L  ++ TY+ +++GL   G +D+A  L  DME     P+ +T+ TL+  +
Sbjct: 484 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 543

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  E  +  ELL +M ++ + P     +++++
Sbjct: 544 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 576



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGYC+  E++  L L  EM  KG+KP+   +N + + L +  +V  A ++  EM  +G
Sbjct: 294 VINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D   YT  IDG CK G +  +  LF  ++  K   D   Y+ +I GLC++GR+  A 
Sbjct: 354 IAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEAD 413

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH +    L  D VTY+ +I G   +G+M +A  L   M +  + PN++T+  L  G 
Sbjct: 414 KLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL 473

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E     ELLH+M  K +  +    + +V+ L K
Sbjct: 474 CKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 510



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  +++ A +L+++ML  G+ P++V +  L  GL +  +V+ A +L  EM R G
Sbjct: 434 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 493

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ++GLCK G I ++V+L + + +     D   Y+ L+D  CKS  +  A 
Sbjct: 494 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 553

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L   VVT++++++G    G ++    L   M E  + PN  T+ +LI  +
Sbjct: 554 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 613

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N      E+   M  K V+PD +  +I++
Sbjct: 614 CIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 645



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+   +  A  L+ EM+ K ++PD V +  L  G  +  +++ AF L ++M + G
Sbjct: 399 VICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG 458

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT   DGLCK G +  + EL   +     EL+I  Y+ L++GLCK+G ++ A+
Sbjct: 459 LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAV 518

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       D VTY+ ++       +M +AH+L   M +  + P V+TF  L++GF
Sbjct: 519 KLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                     +LL  M EK +MP+A+  + ++
Sbjct: 579 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 610



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 35/249 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  E++ A  L  EM  KG++ ++  +N+L  GL +   +++A KL  +M+  G
Sbjct: 469 LADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 528

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--- 118
              D  TYT  +D  CK+  +V + EL R +   + +  +  ++ L++G C SG LE   
Sbjct: 529 FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 588

Query: 119 --------------------------------IALELFHSLPRGVLVADVVTYSIMIHGL 146
                                              E++  +    +V D  TY+I+I G 
Sbjct: 589 KLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 648

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                M +A  L  DM        V ++  LI GF +  +  +  EL  +M+ + ++ D 
Sbjct: 649 CKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADR 708

Query: 207 SIVSIVVDL 215
            I +I  D+
Sbjct: 709 EIYNIFADI 717



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 1/203 (0%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE-IHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++ A  L+ +ML+ G+   V   N     L E +  ++ A K+F E    GV  +T +Y 
Sbjct: 198 LDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYN 257

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I    LC+ G +VE+ +L   + +  C  D+ +YS +I+G C+ G L+  L+L   +   
Sbjct: 258 IITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIK 317

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            L  +  TY+ +I  L   G++ +A  +  +M    +AP+ + + TLI GF ++   S  
Sbjct: 318 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 377

Query: 191 IELLHKMKEKNVMPDASIVSIVV 213
             L  +M+++ + PD    + V+
Sbjct: 378 YRLFDEMQKRKISPDFITYTAVI 400



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 102/207 (49%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           I+ AL ++ E    G+  +   +N +   L ++ +V  A +L  +M+  G   D  +Y+ 
Sbjct: 234 IKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYST 293

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I+G C+ G +   ++L   ++I   + +   Y+ +I  LCK+G++  A  +   +    
Sbjct: 294 VINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  D V Y+ +I G    G +  A+ LF +M++  ++P+ IT+  +I G  +     +  
Sbjct: 354 IAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEAD 413

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +L H+M  K + PD    + ++D   K
Sbjct: 414 KLFHEMVCKRLEPDEVTYTALIDGYCK 440



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 18/204 (8%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           +++ +  D  ++  L +G+   H VE+    + +       +D R + IF   L + G +
Sbjct: 144 MARKLIQDFWVNPNLDVGVSFGHFVEQLIYTYKDW-----GSDPRVFDIFFQVLVEAGML 198

Query: 83  VESVELFRTL-------RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
            E+ +LF  +        +  C L I   S  +DG+      +IAL++F   P   +  +
Sbjct: 199 DEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGI------KIALKVFVEFPEVGVCWN 252

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
             +Y+I+ H L   G++ +AH L L ME     P+VI++ T+I+G+ ++ E  +V++L+ 
Sbjct: 253 TASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIE 312

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
           +M+ K + P+    + V+ LL K 
Sbjct: 313 EMQIKGLKPNPYTYNGVILLLCKT 336



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF-KLFDEMQR 59
           +L+NG+C +  +E    L   ML KGI P+   +N+L I  + I    RA  +++  M  
Sbjct: 573 VLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL-IKQYCIRNNMRATTEIYRGMCA 631

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  D  TY I I G CK   + E+  L R +      L + +Y+ LI G  K  +   
Sbjct: 632 KGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLE 691

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           A ELF  + R  LVAD   Y+I     Y++G+M+   +L  +  E  +  ++ T  T
Sbjct: 692 ARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT 748



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 91/195 (46%), Gaps = 1/195 (0%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN-GYIV 83
           K    D  + +  F  L E   ++ A KLFD+M   G+     +  +FI  L ++   I 
Sbjct: 176 KDWGSDPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIK 235

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
            ++++F     +    +  +Y+ +   LC+ GR+  A +L   +     + DV++YS +I
Sbjct: 236 IALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVI 295

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +G    G++ +   L  +M+   + PN  T+  +I    +  + ++   +L +M  + + 
Sbjct: 296 NGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIA 355

Query: 204 PDASIVSIVVDLLAK 218
           PD  I + ++D   K
Sbjct: 356 PDGVIYTTLIDGFCK 370


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 120/220 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   +I+ A+ LY+EM+  G +PDV+ +NTL  GL        A  +F +M+++G
Sbjct: 169 LINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNG 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   ID LCK+  + ++++    +       D   Y+ ++ GLC  G+L  A 
Sbjct: 229 CKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEAT 288

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +     DVVTY+I+I  LY D  ++ A D   +M +  + P+V+T+ T++HG 
Sbjct: 289 RLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGL 348

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             + + ++ I L  KM++K   PD    + ++D L K+ +
Sbjct: 349 CYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRL 388



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  A++  SEM+ +GI PD + +N++  GL  + Q+  A +LF  M+++G
Sbjct: 239 IIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNG 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ID L K+  + ++ +    +       D+  Y+ ++ GLC  G+L  A+
Sbjct: 299 CKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAI 358

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +     DVV Y+ +I  L  D  ++ A +   +M +  + PN +T+ T++HGF
Sbjct: 359 RLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGF 418

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +  +  +L  +M  +NVMP+    SI+VD L +
Sbjct: 419 CNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQ 455



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  A+   SEM+ +GI P+ V ++T+  G   + Q++ A +LF EM    
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +T T++I +DGLC+ G + E+  +F T+     E +I  Y+ L++G C   ++  A 
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       D+ +Y+I+I+G  N  +MDKA  L   M    + PN +T+ T++ G 
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGL 558

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       EL  KM    ++P     SI+++ L K
Sbjct: 559 CYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCK 595



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+   K++ +  A +  SEM+ +GI PDVV + T+  GL  + Q+  A +LF +M++ 
Sbjct: 308 IIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQK 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   ID LCK+  + +++E    +       +   YS ++ G C  G+L+ A
Sbjct: 368 GCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEA 427

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    ++ + +T+SI++ GL  +G + +A  +F  M E  V PN+ T+  L++G
Sbjct: 428 TQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNG 487

Query: 181 F---IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    ++NE  KV E+   M  K   PD    +I+++
Sbjct: 488 YCLRCKMNEARKVFEI---MVGKGCAPDLHSYNILIN 521



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 100/159 (62%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC ++ ++ A  L ++M  K + P+ V +NT+  GL  + ++  A +LF +M   
Sbjct: 518 ILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS 577

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY+I ++GLCK+G++ E+++LF++++  K E DI  Y+ LI+G+   G+LE+A
Sbjct: 578 GMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVA 637

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
             LF  L    +     TY++MI GL  +G  D+A++LF
Sbjct: 638 KGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 104/197 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC   ++  A  ++  M+ KG  PD+  +N L  G     ++++A  L  +M    
Sbjct: 484 LMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKK 543

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   + GLC  G ++++ ELF+ +        +  YS L++GLCK G L+ AL
Sbjct: 544 LTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEAL 603

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+    L  D++ Y+I+I G++  G+++ A  LF  +  + + P   T+  +I G 
Sbjct: 604 KLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGL 663

Query: 182 IRINEPSKVIELLHKMK 198
           ++     +  EL  K K
Sbjct: 664 LKEGLSDEAYELFRKWK 680



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C+   +  A  ++  M  KG++P++  +N L  G     ++  A K+F+ M   
Sbjct: 448 ILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGK 507

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D  +Y I I+G C +  + ++  L   + + K   +   Y+ ++ GLC  GRL  A
Sbjct: 508 GCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDA 567

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    ++  ++TYSI+++GL   G +D+A  LF  M+E  + P++I +  LI G
Sbjct: 568 QELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEG 627

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                +      L  K+    + P     ++++  L K  +S
Sbjct: 628 MFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLS 669



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 111/214 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K+    + L ++M   G+   V   N L   L  ++ V+ A  ++ +M + G+  D  
Sbjct: 105 KMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVI 164

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+T  I+G+C  G I  +VEL+  +     E D+ +Y+ LI+GLC SG   +A+ +F  +
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     +VVTY+ +I  L  D  ++ A D   +M    + P+ IT+ +++HG   + + 
Sbjct: 225 EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQL 284

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++   L  +M++    PD    +I++D L K+ +
Sbjct: 285 NEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRL 318



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 104/203 (51%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
            ++ AL  +  M     +P +V        + ++ Q      L ++M   GV     +  
Sbjct: 73  SVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLN 132

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+ LC+  ++  +V ++  +  L  + D+  ++ LI+G+C  G++++A+EL++ + R 
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               DV++Y+ +I+GL N G  + A  +F  ME+N   PNV+T+ T+I    +    +  
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDA 252

Query: 191 IELLHKMKEKNVMPDASIVSIVV 213
           ++ L +M  + + PDA   + +V
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIV 275



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 58/96 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK+  ++ AL L+  M  K ++PD++++  L  G+F   ++E A  LF ++  D
Sbjct: 588 ILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSAD 647

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
           G+    RTY + I GL K G   E+ ELFR  +++K
Sbjct: 648 GIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 84/176 (47%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            V+ A   F  M R         +  F+  + K       V L   + +      + + +
Sbjct: 73  SVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLN 132

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI+ LC+   ++ A+ ++  + +  +  DV+T++ +I+G+ N+G++  A +L+ +M  +
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
              P+VI++ TLI+G       +  + +  KM++    P+    + ++D L K+ +
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRL 248


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 114/201 (56%), Gaps = 1/201 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C+ K+ + A  L + M  +G  PDV  + TL   L +   +  A KLFDEM   
Sbjct: 129 ILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 188

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV  D   Y I IDG  K G I+ + E++ R L+      +I +Y+ +I+GLCK G+ + 
Sbjct: 189 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 248

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + E++H + +     D+ TYS +IHGL   G +D A  ++ +M EN V+P+V+ + T+++
Sbjct: 249 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 308

Query: 180 GFIRINEPSKVIELLHKMKEK 200
           G++R     + +EL   M+++
Sbjct: 309 GYLRAGRIEECLELWKVMEKE 329



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C +  ++GA  +Y EM   G+ PDVV++NT+  G     ++E   +L+  M+++G
Sbjct: 271 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 330

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y I I GL +N  + E++ ++  L    C  D   Y  L+ GLCK+G L  AL
Sbjct: 331 CRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 389

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +      G    D   YS MI+GL  +G++D+   +   M ++   PN      +I+GF
Sbjct: 390 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGF 449

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R ++    +     M  K   P     + +++ L+K E
Sbjct: 450 VRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 488



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 116/213 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ +  ++E AL  +  M+SKG  P VV +NTL  GL +  +   A+ L  EM + G
Sbjct: 445 VINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKG 504

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY++ ++GLC+   +  ++ L+        + D++ ++ +I GLC SG++E AL
Sbjct: 505 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 564

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + +   V ++VT++ ++ G Y     ++A  ++  + +  + P++I++   + G 
Sbjct: 565 QLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGL 624

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              +  S  +  L+   ++ V+P A   +I+V 
Sbjct: 625 CSCHRISDAVGFLNDAVDRGVLPTAITWNILVQ 657



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 106/205 (51%), Gaps = 2/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C+   ++    +  +M   G KP+  + N +  G     ++E A + F  M   G
Sbjct: 410 MINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   I+GL K     E+  L + +     + ++  YS L++GLC+  +L++AL
Sbjct: 470 CFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMAL 529

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L+  +L +G    DV  ++I+IHGL + G+++ A  L+ +M++    PN++T  TL+ G
Sbjct: 530 NLWCQALEKG-FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEG 588

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F ++ +  +  ++   + +  + PD
Sbjct: 589 FYKVRDFERASKIWDHILQYGLQPD 613



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 96/183 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING  K +    A  L  EML KG KP+++ ++ L  GL +  +++ A  L+ +    G
Sbjct: 480 LINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKG 539

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + + I I GLC +G + ++++L+  ++   C  ++  ++ L++G  K    E A 
Sbjct: 540 FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERAS 599

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +++  + +  L  D+++Y+I + GL +  ++  A     D  +  V P  IT+  L+ G+
Sbjct: 600 KIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGY 659

Query: 182 IRI 184
           + +
Sbjct: 660 LAL 662



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 98/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CKN  +  AL++  E  +     D   ++++  GL    +++    + D+M + 
Sbjct: 374 VLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKH 433

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +       I+G  +   + +++  F  +    C   +  Y+ LI+GL K+ R   A
Sbjct: 434 GCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEA 493

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +     +++TYS++++GL    ++D A +L+    E    P+V     +IHG
Sbjct: 494 YALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 553

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                +    ++L  +MK++N +P+
Sbjct: 554 LCSSGKVEDALQLYSEMKQRNCVPN 578



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 82/146 (56%), Gaps = 2/146 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG C+ K+++ ALNL+ + L KG KPDV +HN +  GL    +VE A +L+ EM++ 
Sbjct: 514 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 573

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+   ++G  K      + +++  +     + DI +Y+  + GLC   R+  A
Sbjct: 574 NCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDA 633

Query: 121 LELFH-SLPRGVLVADVVTYSIMIHG 145
           +   + ++ RGVL    +T++I++ G
Sbjct: 634 VGFLNDAVDRGVL-PTAITWNILVQG 658



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 78  KNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           KN    +++++F+ +  I  C+  I++Y+ L++ L +S + + A   F       L  ++
Sbjct: 65  KNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNL 124

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            TY+I+I       Q DKA +L   M     +P+V ++GTLI+   +    S  ++L  +
Sbjct: 125 QTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE 184

Query: 197 MKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           M E+ V PD +  +I++D   K    LN+
Sbjct: 185 MPERGVTPDVACYNILIDGFFKKGDILNA 213



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 2/173 (1%)

Query: 48  ERAFKLFDEMQR-DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           ++A  +F  M    G     R+Y   ++ L ++    E+   F     +    ++Q Y+ 
Sbjct: 70  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 129

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI   C+  + + A EL + +       DV +Y  +I+ L  +G M  A  LF +M E  
Sbjct: 130 LIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERG 189

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHK-MKEKNVMPDASIVSIVVDLLAK 218
           V P+V  +  LI GF +  +     E+  + +K  +V P+    +++++ L K
Sbjct: 190 VTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 242



 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           + +Y+ +++ L    + D+A   FL  E   ++PN+ T+  LI    R  +  K  ELL+
Sbjct: 89  IRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLN 148

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            M  +   PD      +++ LAKN    ++L  F
Sbjct: 149 WMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLF 182


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 124/235 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C+   +  AL +  EM+  G  PDVV +NTL  GL + H++  A KL +EM+  
Sbjct: 337 MVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEER 396

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I G C+ G    +++LF TL   +   D+  Y+ LIDG+C+ G L  A
Sbjct: 397 GVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKA 456

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    ++ + +TYSI+I      GQ++ A     +M +    PN+ T+ ++I G
Sbjct: 457 NELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKG 516

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           + R     K  + L KM++ NV PD    + ++    K E    +   F + E++
Sbjct: 517 YCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE 571



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQR 59
           ILI G+C+  E++ A+  Y EM  + + PDVV  + L IGLF    +++ A     EM+ 
Sbjct: 267 ILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCL-IGLFSRRGEMDHAGAYLREMKG 325

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT+ I G C+ G + E++ +   +    C  D+  Y+ L++GLCK  RL  
Sbjct: 326 LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLD 385

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +L + +    +  D+ T++ +IHG    G  + A  LF  +    + P+V+T+ +LI 
Sbjct: 386 AEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLID 445

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  R  + +K  EL   M  + ++P+    SI++D
Sbjct: 446 GMCRKGDLAKANELWDDMHAREILPNHITYSILID 480



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 113/225 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ YCK  E +GA  + SEM  + + PDVV HN L    F    V+ A  L D M   
Sbjct: 162 IMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANR 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   + GLCK+    ++ E+FRT+       D+++++ LI G C+ G ++ A
Sbjct: 222 GLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++ +  +    +  DVV++S +I      G+MD A     +M+   + P+ + +  +I G
Sbjct: 282 VKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           F R    S+ + +  +M     +PD    + +++ L K    L++
Sbjct: 342 FCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDA 386



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+   +  +++ A+ L   M ++G+KP +V +N++  GL +  + ++A ++F  M + 
Sbjct: 197 VLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQC 256

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL------------- 107
            VA D R++ I I G C+ G + E+V+ ++ ++      D+ ++SCL             
Sbjct: 257 SVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHA 316

Query: 108 ----------------------IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                 I G C++G +  AL +   +     + DVVTY+ +++G
Sbjct: 317 GAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNG 376

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++  A  L  +MEE  V P++ TF TLIHG+ R       ++L   +  + + PD
Sbjct: 377 LCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPD 436

Query: 206 ASIVSIVVDLLAK 218
               + ++D + +
Sbjct: 437 VVTYNSLIDGMCR 449



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 35/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF------------------- 42
           LI+GYC+    E AL L+  +L + ++PDVV +N+L  G+                    
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 43  ----------------EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                           E  QVE AF   DEM + G   + RTY   I G C++G + +  
Sbjct: 468 ILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQ 527

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +  + +R      D+  ++ LI G  K   +  A  +F+ + + ++  D VTY+++I+G 
Sbjct: 528 QFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGF 587

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              G M  A  +F  M ++ + P+  T+ +LI+G +      +  +L  +M  +   PD
Sbjct: 588 SEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 96/236 (40%), Gaps = 39/236 (16%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           S +L+    P   + + L     +  +   AF+ F  +    V          +  L + 
Sbjct: 76  SSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRA 135

Query: 80  GYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           G+   + E +R   +L  + ++ AY+   ++   CK+   + A  +   + +  +  DVV
Sbjct: 136 GWPHLAQEAYRL--VLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVV 193

Query: 138 TYSIMIHGLYNDG-----------------------------------QMDKAHDLFLDM 162
           T++++I   +  G                                   + DKA ++F  M
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTM 253

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++ +VAP+V +F  LI GF R+ E  + ++   +M+ + V PD    S ++ L ++
Sbjct: 254 DQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSR 309



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD----VVTY 139
           E+ E FR L   +  +   A + L+  L ++G   +A E +    R VL +D      T 
Sbjct: 105 EAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAY----RLVLSSDSEVNAYTL 160

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +IM+H      + D A  +  +ME+  V P+V+T   LI    R  +    I L+  M  
Sbjct: 161 NIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMAN 220

Query: 200 KNVMPDASIVSIVVDLLAKNE 220
           + + P     + V+  L K+ 
Sbjct: 221 RGLKPGIVTYNSVLKGLCKHR 241



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING+ +   ++ A  ++  M   GI+PD   + +L  G       ++AF+L DEM   
Sbjct: 582 MIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHR 641

Query: 61  GVAADTR 67
           G A D +
Sbjct: 642 GFAPDDK 648


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK+++++ A+ L+ +M+ K I PDVV +  L  GL +  +V+ A+ LF+E +  
Sbjct: 210 IMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 269

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G      TY   IDGLCK G I  ++ L+  + R    + D+  YS LI+GL  S R E 
Sbjct: 270 GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEK 329

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLI 178
           A EL+  +       DVVTY+ ++ GL   G  DKA ++F  M   N   PNVIT+  LI
Sbjct: 330 AYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLI 389

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             F +++     ++L  +M+ ++++PDA   + V+  L K
Sbjct: 390 DRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCK 429



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C   +I  A  ++ +M S    P+++ +  +  GL +  +V++A  LF +M   
Sbjct: 176 IVLRGLCSGGKISMAWEVFKDM-SGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDK 234

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   IDGL K   + E+ +LF   R   C   +  Y+ +IDGLCK GR+E A
Sbjct: 235 AIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENA 294

Query: 121 LELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L+  + R   L  D+ TYS +I+GL    + +KA++L+ +M +   +P+V+T+ TL+ 
Sbjct: 295 LTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLD 354

Query: 180 GFIRINEPSKVIELLHKMKEKNVM-PDASIVSIVVDLLAK 218
           G  +     K +E+  KM   NV  P+    ++++D   K
Sbjct: 355 GLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCK 394



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 121/214 (56%), Gaps = 3/214 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I+G CK   IE AL LY +M+ +  +KPD+  ++ L  GL   ++ E+A++L++EM   
Sbjct: 281 MIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDT 340

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEI 119
           G + D  TY   +DGLCK+G   +++E+FR + +   C+ ++  Y+ LID  CK  RL  
Sbjct: 341 GCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGD 400

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A++L   +    L+ D VT++ +I  L  + ++D+AH+LF  + +    P+ + F T++ 
Sbjct: 401 AVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTC-KPDSVLFNTMLA 459

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+ +I       +L  +M +    P  +  + +V
Sbjct: 460 GYCKITRIDDAKKLHDRMLDSGCAPTLATYTALV 493



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 115/216 (53%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ Y K + +E A   +   +    +PD V +NTL  G F+   V++A  LF EM+  G
Sbjct: 108 LLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSG 167

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A   R++ I + GLC  G I  + E+F+ +  +    ++ +Y+ +IDGLCKS +++ A+
Sbjct: 168 IAV-LRSHNIVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAI 225

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  DVVTY  +I GL    ++ +A+DLF +       P V+T+ T+I G 
Sbjct: 226 TLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGL 285

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLL 216
            +       + L   M +E ++ PD    S +++ L
Sbjct: 286 CKCGRIENALTLYDDMVREPHLKPDMFTYSALINGL 321



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+ K  +++ AL L+ EM   GI   +  HN +  GL    ++  A+++F +M   G
Sbjct: 143 LMNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMS--G 199

Query: 62  V-AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           + + +  +YTI IDGLCK+  + +++ LF+ +       D+  Y  LIDGL K  R++ A
Sbjct: 200 IFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEA 259

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
            +LF           VVTY+ MI GL   G+++ A  L+ DM  E  + P++ T+  LI+
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALIN 319

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G    N   K  EL  +M +    PD    + ++D L K+
Sbjct: 320 GLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKS 359



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +CK   +  A+ L  EM  + + PD V   T+   L +  +++ A +LF+ + + 
Sbjct: 387 VLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKT 446

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D+  +   + G CK   I ++ +L   +    C   +  Y+ L+ G C++GR   A
Sbjct: 447 -CKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDA 505

Query: 121 LELFHSL 127
           L ++H +
Sbjct: 506 LIMYHEM 512


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 114/201 (56%), Gaps = 1/201 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C+ K+ + A  L + M  +G  PDV  + TL   L +   +  A KLFDEM   
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV  D   Y I IDG  K G I+ + E++ R L+      +I +Y+ +I+GLCK G+ + 
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 273

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + E++H + +     D+ TYS +IHGL   G +D A  ++ +M EN V+P+V+ + T+++
Sbjct: 274 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 180 GFIRINEPSKVIELLHKMKEK 200
           G++R     + +EL   M+++
Sbjct: 334 GYLRAGRIEECLELWKVMEKE 354



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C +  ++GA  +Y EM   G+ PDVV++NT+  G     ++E   +L+  M+++G
Sbjct: 296 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y I I GL +N  + E++ ++  L    C  D   Y  L+ GLCK+G L  AL
Sbjct: 356 CRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +      G    D   YS MI+GL  +G++D+   +   M ++   PN      +I+GF
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGF 474

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R ++    +     M  K   P     + +++ L+K E
Sbjct: 475 VRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 513



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 98/186 (52%), Gaps = 2/186 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C+   ++    +  +M   G KP+  + N +  G     ++E A + F  M   G
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   I+GL K     E+  L + +     + ++  YS L++GLC+  +L++AL
Sbjct: 495 CFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMAL 554

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L+  +L +G    DV  ++I+IHGL + G+++ A  L+ +M++    PN++T  TL+ G
Sbjct: 555 NLWCQALEKG-FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEG 613

Query: 181 FIRINE 186
           F ++ +
Sbjct: 614 FYKVRD 619



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 110/214 (51%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   ++ + + A + +    + G+ P++  +N L        Q ++A +L + M   G
Sbjct: 120 LLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQG 179

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  +Y   I+ L KNGY+ ++++LF  +       D+  Y+ LIDG  K G +  A 
Sbjct: 180 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 239

Query: 122 ELFHSLPRGVLV-ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           E++  L +G  V  ++ +Y++MI+GL   G+ D++ +++  M++N    ++ T+ TLIHG
Sbjct: 240 EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHG 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                       +  +M E  V PD  + + +++
Sbjct: 300 LCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ +  ++E AL  +  M+SKG  P VV +NTL  GL +  +   A+ L  EM   G
Sbjct: 470 VINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY++ ++GLC+   +  ++ L+        + D++ ++ +I GLC SG++E AL
Sbjct: 530 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           +L+  + +   V ++VT++ ++ G Y     ++A  ++
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIW 627



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I  Y KN   + AL+++  M    G +P +  +N+L   L E ++ + A   F   +  
Sbjct: 84  VIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETM 143

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ + +TY I I   C+     ++ EL   +       D+ +Y  LI+ L K+G +  A
Sbjct: 144 GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDA 203

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIH 179
           L+LF  +P   +  DV  Y+I+I G +  G +  A +++   ++  +V PN+ ++  +I+
Sbjct: 204 LKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMIN 263

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G  +  +  +  E+ H+MK+     D    S ++
Sbjct: 264 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLI 297



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 96/205 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CKN  +  AL++  E  +     D   ++++  GL    +++    + D+M + 
Sbjct: 399 VLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKH 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +       I+G  +   + +++  F  +    C   +  Y+ LI+GL K+ R   A
Sbjct: 459 GCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEA 518

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +       +++TYS++++GL    ++D A +L+    E    P+V     +IHG
Sbjct: 519 YALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 578

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                +    ++L  +MK++  +P+
Sbjct: 579 LCSSGKVEDALQLYSEMKQRKCVPN 603



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 73  IDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
           I    KN    +++++F+ +  I  C+  I++Y+ L++ L +S + + A   F       
Sbjct: 85  IKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMG 144

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           L  ++ TY+I+I       Q DKA +L   M E   +P+V ++GTLI+   +    S  +
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDAL 204

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +L  +M E+ V PD +  +I++D   K    LN+
Sbjct: 205 KLFDEMPERGVTPDVACYNILIDGFFKKGDILNA 238



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG C+ K+++ ALNL+ + L KG KPDV +HN +  GL    +VE A +L+ EM++ 
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 61  GVAADTRTYTIFIDGLCK 78
               +  T+   ++G  K
Sbjct: 599 KCVPNLVTHNTLMEGFYK 616



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 42/65 (64%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G C + ++E AL LYSEM  +   P++V HNTL  G +++   ERA K++D + + 
Sbjct: 574 IIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQS 633

Query: 61  GVAAD 65
             +++
Sbjct: 634 WSSSN 638



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMIH 144
           VEL RT +  KC  D+     +I    K+   + AL++F  +         + +Y+ +++
Sbjct: 66  VELIRTQKC-KCPEDVAL--TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLN 122

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L    + D+A   FL  E   ++PN+ T+  LI    R  +  K  ELL+ M E+   P
Sbjct: 123 ALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSP 182

Query: 205 DASIVSIVVDLLAKNEISLNSLPSF 229
           D      +++ LAKN    ++L  F
Sbjct: 183 DVFSYGTLINSLAKNGYMSDALKLF 207


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 115/197 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK K ++ A+NL+ EM SK + P+ V +N+L  GL +  ++  A+ L +EM   
Sbjct: 349 IMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNR 408

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TY+  +D LCKN  + +++ L   ++    + +I  Y+ L+DGLCK+GRL+ A
Sbjct: 409 GQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDA 468

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  L       DV  Y++M++GL  +G  D+A  L   ME+N   P+ +T+ TL+  
Sbjct: 469 QAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRA 528

Query: 181 FIRINEPSKVIELLHKM 197
               ++  K ++LL +M
Sbjct: 529 LFENDKNDKAVKLLREM 545



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 118/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  E++ A N+ + M+ +G+  ++V +N+L  G F + Q  +A  +F+ M R 
Sbjct: 279 ILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARR 338

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D ++Y+I I+GLCK   + E+V LF+ +       +   Y+ LIDGL K GR+  A
Sbjct: 339 GVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDA 398

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L + +      ADV+TYS ++  L  + Q+DKA  L   +++  + PN+ T+  L+ G
Sbjct: 399 WDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDG 458

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +         +   +  K    D  + +++V+ L K
Sbjct: 459 LCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCK 496



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+K +  A +L SEM+ K I PDVV + TL  G   + +++ A  LF++M    
Sbjct: 210 IIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKN 269

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +DGLCK G + ++  +   +     + +I  Y+ L+DG     +   A 
Sbjct: 270 IKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKAT 329

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++ R  +  DV +YSIMI+GL     +D+A +LF +M   ++APN +T+ +LI G 
Sbjct: 330 FVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGL 389

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++    S   +L+++M  +    D    S ++D L KN 
Sbjct: 390 LKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNH 428



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 117/220 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C N ++  AL+ + ++++KG   D V + TL  GL +  +   A ++  ++    
Sbjct: 140 LIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLL 199

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   ID LCK+  ++ + +L   + + +   D+  Y+ LI G    GRL+ A+
Sbjct: 200 VQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAV 259

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  DV T++I++ GL  +G+M KA ++   M +  V  N++T+ +L+ G+
Sbjct: 260 GLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             + + +K   + + M  + V PD    SI+++ L K ++
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKM 359



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 104/204 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++   +M  K I+PD+   N L      +  +  AF +  ++ + G   DT T T  I 
Sbjct: 83  AISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIK 142

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC NG + E++     +      LD  +Y  LI+GLCK+G    AL++   +   ++  
Sbjct: 143 GLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQP 202

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +VV Y+ +I  L  D  +  A DL  +M    + P+V+T+ TLI+G + +    + + L 
Sbjct: 203 NVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLF 262

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
           ++M  KN+ PD    +I+VD L K
Sbjct: 263 NQMLLKNIKPDVYTFNILVDGLCK 286



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 75/153 (49%)

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           +  L K  +   ++   + + + + + D+  ++ LI+  C  G L  A  +   + +   
Sbjct: 71  LSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGF 130

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             D VT + +I GL  +G++ +A     D+       + +++GTLI+G  +  E    ++
Sbjct: 131 HPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQ 190

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +L K+    V P+  + + ++D L K+++ +++
Sbjct: 191 VLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHA 223



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK    + AL+L S+M   G  PD V + TL   LFE  + ++A KL  EM   
Sbjct: 489 VMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQ 548

Query: 61  GVAADT 66
           G A  +
Sbjct: 549 GSAVGS 554


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK K++  A++L SEM+ KG+ PDV    +L  G FE+ +   A +LF  M+  G
Sbjct: 338 LIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQG 397

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                +T  + +DGL K     E++ LFR +     +LDI  Y+ ++DG+CK G+L  A 
Sbjct: 398 QVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDAR 457

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  T++IMI GL  +G +D A +L   M+EN   PN  ++   + G 
Sbjct: 458 KLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGL 517

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R  + S+  + L  MK+K    DA+   +++  L+ NE
Sbjct: 518 LRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFLSANE 556



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEM-QR 59
           +++G CK   +  AL L+ EM    ++P+VV +N L  GL  E+        LF+EM   
Sbjct: 194 ILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAE 253

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D +T++I ++G CK G ++ +  +   +  +  EL++  Y+ LI G C   R+E 
Sbjct: 254 KGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEE 313

Query: 120 ALELFHSLPR---GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           A+ +F  + R   G L   VVTY+ +IHG     +++KA  L  +M    + P+V T+ +
Sbjct: 314 AVRVFDLMVREGEGCL-PSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTS 372

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           LI GF  + +P    EL   MK++  +P     ++V+D L K  +   ++  F   E+ 
Sbjct: 373 LIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKS 431



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 13/211 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNT------LFIGLFEIHQVERAFKLF 54
           ILIN  C+ ++      +   M   G++P +V  NT      +  GL +I     A +  
Sbjct: 117 ILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVNGLCKIGDTSGALESL 176

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC-K 113
            +M +  +  +   Y   +DGLCK G + E++ LF  + ++  E ++  Y+CLI GLC +
Sbjct: 177 KKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGE 236

Query: 114 SGRLEIALELFHSL--PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            G     + LF+ +   +G+ V DV T+SI+++G   +G + +A  +   M    V  NV
Sbjct: 237 VGGWREGVGLFNEMVAEKGI-VPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNV 295

Query: 172 ITFGTLIHGFI---RINEPSKVIELLHKMKE 199
           +T+ +LI G+    R+ E  +V +L+ +  E
Sbjct: 296 VTYNSLISGYCLRNRMEEAVRVFDLMVREGE 326



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 15/223 (6%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-ADTRTYTIFI 73
           +++ +  ML+    P +   N LF  + +      A  L   +   G   AD  T  I I
Sbjct: 60  SVDFFHRMLTLNPFPCIQDFNLLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLNILI 119

Query: 74  DGLCKN-----GYIV----ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           + LC+      G+ V      + L  TL  L     I    C+++GLCK G    ALE  
Sbjct: 120 NCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLN---TIANGLCIVNGLCKIGDTSGALESL 176

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI-R 183
             + +  L  +VV Y+ ++ GL   G + +A  LF +M    V PNV+T+  LI G    
Sbjct: 177 KKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGE 236

Query: 184 INEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +    + + L ++M  EK ++PD    SI+V+   K  + L +
Sbjct: 237 VGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRA 279



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 1/148 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ L+  M   G+  D+VI+N +  G+ ++ ++  A KL   +   G+  D+ T+ I I 
Sbjct: 421 AMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIK 480

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC+ G + ++ EL R ++   C  +  +Y+  + GL +   +  + +    +       
Sbjct: 481 GLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPV 540

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           D  T  ++I  L  + + D A   FL +
Sbjct: 541 DATTAELLIRFLSAN-EEDNAFQEFLQI 567


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 114/201 (56%), Gaps = 1/201 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C+ K+ + A  L + M  +G  PDV  + TL   L +   +  A KLFDEM   
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV  D   Y I IDG  K G I+ + E++ R L+      +I +Y+ +I+GLCK G+ + 
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 273

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + E++H + +     D+ TYS +IHGL   G +D A  ++ +M EN V+P+V+ + T+++
Sbjct: 274 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 180 GFIRINEPSKVIELLHKMKEK 200
           G++R     + +EL   M+++
Sbjct: 334 GYLRAGRIEECLELWKVMEKE 354



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C +  ++GA  +Y EM   G+ PDVV++NT+  G     ++E   +L+  M+++G
Sbjct: 296 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y I I GL +N  + E++ ++  L    C  D   Y  L+ GLCK+G L  AL
Sbjct: 356 CRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +      G    D   YS MI+GL  +G++D+   +   M ++   PN      +I+GF
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGF 474

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R ++    +     M  K   P     + +++ L+K E
Sbjct: 475 VRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 513



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ +  ++E AL  +  M+SKG  P VV +NTL  GL +  +   A+ L  EM   G
Sbjct: 470 VINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY++ ++GLC+   +  ++ L+        + D++ ++ +I GLC SG++E AL
Sbjct: 530 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + +   V ++VT++ ++ G Y     ++A  ++  + +    P++I++   + G 
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              +  S  +  L+   ++ V+P A   +I+V  +  N
Sbjct: 650 CSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDN 687



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 2/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C+   ++    +  +M   G KP+  + N +  G     ++E A + F  M   G
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   I+GL K     E+  L + +     + ++  YS L++GLC+  +L++AL
Sbjct: 495 CFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMAL 554

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L+  +L +G    DV  ++I+IHGL + G+++ A  L+ +M++    PN++T  TL+ G
Sbjct: 555 NLWCQALEKG-FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEG 613

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F ++ +  +  ++   + +    PD
Sbjct: 614 FYKVRDFERASKIWDHILQYGPQPD 638



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 110/214 (51%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   ++ + + A + +    + G+ P++  +N L        Q ++A +L + M   G
Sbjct: 120 LLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQG 179

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  +Y   I+ L KNGY+ ++++LF  +       D+  Y+ LIDG  K G +  A 
Sbjct: 180 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 239

Query: 122 ELFHSLPRGVLV-ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           E++  L +G  V  ++ +Y++MI+GL   G+ D++ +++  M++N    ++ T+ TLIHG
Sbjct: 240 EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHG 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                       +  +M E  V PD  + + +++
Sbjct: 300 LCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I  Y KN   + AL+++  M    G +P +  +N+L   L E ++ + A   F   +  
Sbjct: 84  VIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETM 143

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ + +TY I I   C+     ++ EL   +       D+ +Y  LI+ L K+G +  A
Sbjct: 144 GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDA 203

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIH 179
           L+LF  +P   +  DV  Y+I+I G +  G +  A +++   ++  +V PN+ ++  +I+
Sbjct: 204 LKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMIN 263

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G  +  +  +  E+ H+MK+     D    S ++
Sbjct: 264 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLI 297



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG C+ K+++ ALNL+ + L KG KPDV +HN +  GL    +VE A +L+ EM++ 
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+   ++G  K      + +++  +     + DI +Y+  + GLC   R+  A
Sbjct: 599 KCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDA 658

Query: 121 LELFH-SLPRGVLVADVVTYSIMIHGLYNDGQM 152
           +   + ++ RGVL    +T++I++  + ++G +
Sbjct: 659 VGFLNDAVDRGVL-PTAITWNILVRAVLDNGAL 690



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 96/205 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CKN  +  AL++  E  +     D   ++++  GL    +++    + D+M + 
Sbjct: 399 VLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKH 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +       I+G  +   + +++  F  +    C   +  Y+ LI+GL K+ R   A
Sbjct: 459 GCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEA 518

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +       +++TYS++++GL    ++D A +L+    E    P+V     +IHG
Sbjct: 519 YALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 578

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                +    ++L  +MK++  +P+
Sbjct: 579 LCSSGKVEDALQLYSEMKQRKCVPN 603



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 73  IDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
           I    KN    +++++F+ +  I  C+  I++Y+ L++ L +S + + A   F       
Sbjct: 85  IKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMG 144

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           L  ++ TY+I+I       Q DKA +L   M E   +P+V ++GTLI+   +    S  +
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDAL 204

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +L  +M E+ V PD +  +I++D   K    LN+
Sbjct: 205 KLFDEMPERGVTPDVACYNILIDGFFKKGDILNA 238



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMIH 144
           VEL RT +  KC  D+     +I    K+   + AL++F  +         + +Y+ +++
Sbjct: 66  VELIRTQKC-KCPEDVAL--TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLN 122

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L    + D+A   FL  E   ++PN+ T+  LI    R  +  K  ELL+ M E+   P
Sbjct: 123 ALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSP 182

Query: 205 DASIVSIVVDLLAKNEISLNSLPSF 229
           D      +++ LAKN    ++L  F
Sbjct: 183 DVFSYGTLINSLAKNGYMSDALKLF 207


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 119/203 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K ++ AL L+ EM  +GI P  V +N+L  GL +  ++  A++L DEM  +
Sbjct: 338 IMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN 397

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            + AD  TY   ID  CKN ++ +++ L + ++    + ++  Y+ LIDGLCK G+L+ A
Sbjct: 398 CIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNA 457

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       +  TY+IMI+GL  +G  D+A  L   ME+N + P+ +T+ T+I  
Sbjct: 458 QDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQA 517

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               +E  K  +LL +M  K V+
Sbjct: 518 LFHKDENEKAQKLLREMVIKGVV 540



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A  LYSEM+ K I P VV  ++L  G   + + + AF+LF+EM    
Sbjct: 199 IIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKN 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVE---------------SVELFRTL-------------- 92
           +  D  T+ I +D LCK G I E               +V  + TL              
Sbjct: 259 INPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAK 318

Query: 93  ------RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                   ++   + ++Y+ +I+G CK   ++ AL LFH +    +    VTY+ +I GL
Sbjct: 319 HVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGL 378

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++  A +L  +M  N +  +++T+ +LI  F +     K I L+ K+KE  + P+ 
Sbjct: 379 CKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNM 438

Query: 207 SIVSIVVDLLAK 218
              +I++D L K
Sbjct: 439 CTYNILIDGLCK 450



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 117/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +I+ A N+ + M+ +G++P VV +NTL  G   +++V +A  +   + R 
Sbjct: 268 ILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRM 327

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            VA ++R+Y I I+G CK   + E++ LF  +           Y+ LIDGLCK+GR+  A
Sbjct: 328 RVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYA 387

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    + AD+VTY+ +I     +  +DKA  L   ++E+ + PN+ T+  LI G
Sbjct: 388 WELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDG 447

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +     ++   +  K    +A   +I+++ L K
Sbjct: 448 LCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCK 485



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   E+  A ++ S +    + P+   +N +  G  +I  V+ A  LF EM   G
Sbjct: 304 LMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRG 363

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY   IDGLCK G I  + EL   +       DI  Y+ LID  CK+  ++ A+
Sbjct: 364 IAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAI 423

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  ++ TY+I+I GL   GQ+  A D+F D+       N  T+  +I+G 
Sbjct: 424 ALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGL 483

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNE 220
            +     +   LL KM++  ++PDA +  +I+  L  K+E
Sbjct: 484 CKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDE 523



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL  G C N ++  AL  +  +L+ G   + V +  L  GL ++ Q   A ++  +++  
Sbjct: 128 ILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGK 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +   Y+  IDGLCK+  + ++  L+  + + +    +  +S LI G C  G+ + A
Sbjct: 188 LVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF+ +    +  D  T++I++  L  +G++ +A ++   M +  V P V+T+ TL+ G
Sbjct: 248 FRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +NE  K   +L  +    V P++   +I+++   K
Sbjct: 308 YCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCK 345



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK  +   AL +  ++  K +  +VV+++T+  GL +   V  A+ L+ EM   
Sbjct: 163 ILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVK 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     T++  I G C  G   ++  LF  + +     D   ++ L+D LCK G+++ A
Sbjct: 223 RIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEA 282

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  +   VVTY+ ++ G     ++ KA  +   +    VAPN  ++  +I+G
Sbjct: 283 KNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMING 342

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +I    + + L H+M  + + P     + ++D L K
Sbjct: 343 FCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCK 380



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 14/122 (11%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D+   S LI+  C  G++  A  +F         A ++   + ++G  N+  +   H L 
Sbjct: 101 DLFTLSILINCYCHLGQMTFAFSVF---------AKILKMGLCLNGKVNEALLFHDHVLA 151

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L    N V     T+G LI+G  ++ +    +++L +++ K V  +  + S ++D L K+
Sbjct: 152 LGFHLNHV-----TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKD 206

Query: 220 EI 221
           ++
Sbjct: 207 KL 208


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 122/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML KGIKP  +++N +  GLFE  +   A   F EM   G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TY+I + GL KN    E++ LF+ LR +  ++DI   + +I G+ ++ R+E A 
Sbjct: 635 IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAK 694

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV  VVTYSIMI  L  +G +++A D+F  M+     P+      ++   
Sbjct: 695 DLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVREL 754

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 755 LKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFS 790



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 115/216 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KP+V+ + T+   L  I +++ A + F++M   
Sbjct: 399 VLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQ 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D   Y   I G C +G ++++ EL   +      LDI  +S +I+ LCK GR+  A
Sbjct: 459 GVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDA 518

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L    V YS+++ G    G+M+KA  +F  M    + PN + +GTL++G
Sbjct: 519 QNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNG 578

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +I    + + L  +M +K + P   + +I++D L
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A     +M++KG+ P+   +N L  G     Q + A ++F EM+R  
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ + +  LCK G I E+ ++F T+ +     D+ +Y+ +++G    G L    
Sbjct: 320 ILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +   + T++++I    N G +DKA  +F +M ++ V PNV+T+ T+I   
Sbjct: 380 DLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAAL 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            RI +    +E  ++M ++ V PD
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPD 463



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L+ EM+ +GI PD V ++++   L +   +++A     +M   G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G    G   E+V +F+ +R      D+  ++ L+  LCK G+++ A 
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEAR 344

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DV +Y+IM++G    G +    DLF  M  + +AP + TF  LI  +
Sbjct: 345 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 404

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K + + ++M++  V P+    + V+  L +
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCR 441



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++   +    E AL  + ++L  G++ D++I N L  G  E  + + A   L      
Sbjct: 116 ILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPE 175

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y+I +  LC  G   ++ +L R +      C  D+ AY+ +IDG  K G +
Sbjct: 176 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDV 235

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LF  + +  +  D VTYS ++H L     MDKA      M    V PN  T+  L
Sbjct: 236 NKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNL 295

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+G+    +  + + +  +M+ ++++PD    ++++  L K
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCK 336



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY    + + A+ ++ EM  + I PDVV  N L   L +  +++ A  +FD M   G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKG 354

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y I ++G    G +V+  +LF  +        I  ++ LI      G L+ A+
Sbjct: 355 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 414

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +    +  +V+TY+ +I  L   G+MD A + F  M +  VAP+   +  LI GF
Sbjct: 415 IIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K  EL+ ++    +  D  + S +++ L K
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCK 511



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C +  +  A  L SE+++ G+  D+V+ +++   L ++ +V  A  +FD     G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y++ +DG C  G + +++ +F  +     E +   Y  L++G CK GR++  L
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +    + Y+I+I GL+  G+   A   F +M E+ +A N  T+  ++ G 
Sbjct: 590 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     + I L  +++  NV  D
Sbjct: 650 FKNRCFDEAIFLFKELRAMNVKID 673



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+ K  + AL+ L       G  PDV  ++ L   L +  +  +A  L   M   
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 61  GV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   + D   Y   IDG  K G + ++ +LF+ +       D   YS ++  LCK+  ++
Sbjct: 212 GAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMD 271

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++ +  TY+ +I+G  + GQ  +A  +F +M   ++ P+V+TF  L+
Sbjct: 272 KAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLM 331

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  +  ++   M  K   PD    +I+++
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 367



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 56/224 (25%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELF-------RTL 92
           E A  L DE+QR G     R    F+  +        C++G  + +V LF       +  
Sbjct: 46  EEAHDLLDELQRRGTPVLERDLNGFLAAIARAPSSAACRSGPAL-AVALFNRAASRAQGP 104

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF---------------------------- 124
           R+L        Y+ L+D   ++ R E+AL  F                            
Sbjct: 105 RVL--SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRT 162

Query: 125 --------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV--APNVITF 174
                   H  P    V DV +YSI++  L + G+  +A DL   M E     +P+V+ +
Sbjct: 163 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAY 222

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+I GF +  + +K  +L  +M ++ + PD    S VV  L K
Sbjct: 223 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCK 266


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 125/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+ K +  A+    EM++ G+ P+VV  +TL  G+ +  +   A +LF  M + G
Sbjct: 369 LIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T  I +DGL K  +  E++ LFR L  +  +L+I  Y+ ++DG+C SG+L  AL
Sbjct: 429 QLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDAL 488

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  L    +  DVVTY+IMI GL  +G +D A DL + MEEN   PN  T+   + G 
Sbjct: 489 ELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGL 548

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +R  + SK  + L  MK+K    DA+    +++  + N+
Sbjct: 549 LRRYQISKSTKYLMFMKDKGFQADATTTKFLINYFSANK 587



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +  ALNL+S+M  KGI+PD+  +N L  GL    + + A  L   M R G
Sbjct: 229 VVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +T+ +      K G I  +  +F  +  +  E D+  Y+ +I   C   +++ A+
Sbjct: 289 IMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAM 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +     + ++VTY+ +IHG      M+KA     +M  N + PNV+T+ TLI G 
Sbjct: 349 EVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGV 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +P    EL   M +   +P+    +I++D L K
Sbjct: 409 CKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFK 445



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 4/213 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+        ++   M   G++P +V  NT+  GL     V +A +  D ++  
Sbjct: 123 IVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDM 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  +D+ T     +GLCK G+   ++   + +    C LD+ AYS ++DGLCK G +  A
Sbjct: 183 GYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEA 242

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +  D+ TY+ +IHGL N  +  +A  L  +M    + P+V TF  +   
Sbjct: 243 LNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGR 302

Query: 181 FIRINEPSKVIE----LLHKMKEKNVMPDASIV 209
           F +    S+       ++H   E +V+   SI+
Sbjct: 303 FFKTGMISRAKSIFSFMVHMGIEHDVVTYTSII 335



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 2/227 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K    A++L   M   G+KP V   N +   L  +      F +   M + GV     
Sbjct: 95  KMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIV 154

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+   ++GLC  G + +++     L+ +  E D      + +GLCK G    AL     +
Sbjct: 155 TFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKM 214

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV  YS ++ GL  DG + +A +LF  M    + P++ T+  LIHG    +  
Sbjct: 215 EEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRW 274

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI--SLNSLPSFTVH 232
            +   LL  M  K +MPD    +++     K  +     S+ SF VH
Sbjct: 275 KEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVH 321



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 97/200 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C     + A  L + M+ KGI PDV   N +    F+   + RA  +F  M   G
Sbjct: 264 LIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I   C    + +++E+F  +    C  +I  Y+ LI G C++  +  A+
Sbjct: 324 IEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAM 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  +VVT+S +I G+   G+   A +LFL M ++   PN+ T   ++ G 
Sbjct: 384 YFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGL 443

Query: 182 IRINEPSKVIELLHKMKEKN 201
            + N  S+ + L  ++++ N
Sbjct: 444 FKCNFHSEAMSLFRELEKMN 463



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 94/204 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C    +  A+     +   G + D      +  GL ++     A     +M+   
Sbjct: 159 IVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKN 218

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  +DGLCK+G + E++ LF  +     + D+  Y+CLI GLC   R + A 
Sbjct: 219 CNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAA 278

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++ R  ++ DV T++++    +  G + +A  +F  M    +  +V+T+ ++I   
Sbjct: 279 PLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAH 338

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             +N+    +E+   M  K  +P+
Sbjct: 339 CMLNQMKDAMEVFDLMISKGCLPN 362



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           G C + ++  AL L+S + SKG+K DVV +N +  GL +   ++ A  L  +M+ +G   
Sbjct: 477 GMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPP 536

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           +  TY +F+ GL +   I +S +    ++    + D      LI+    + +   ALE+F
Sbjct: 537 NECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLINYF-SANKENRALEVF 595



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G  K      A++L+ E+       +++I+N +  G+    ++  A +LF  +   
Sbjct: 438 IILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSK 497

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY I I GLCK G + ++ +L   +    C  +   Y+  + GL +  ++  +
Sbjct: 498 GVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKS 557

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
            +    +      AD  T   +I+  ++  + ++A ++FL 
Sbjct: 558 TKYLMFMKDKGFQADATTTKFLIN-YFSANKENRALEVFLQ 597


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 116/207 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    ++ A  ++  M   G  P+ VI+ TL  G  +  +VE   K+F EM + G
Sbjct: 299 LINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKG 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TYT+ I G C  G    + E+F  +   +   DI+ Y+ L+DGLC +G++E AL
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKAL 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  ++VTY+I+I G+   G+++ A DLF  +    + PNVIT+ T+I GF
Sbjct: 419 MIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGF 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASI 208
            R     +   L  KMKE   +P+ S+
Sbjct: 479 CRRGLIHEADSLFKKMKEDGFLPNESV 505



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 116/213 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC    IE A+ L+ ++L  G KP+VV + TL   L +   +  A +LF++M  +G
Sbjct: 159 LLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNG 218

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   + GLC+ G   ++  L R +   + E ++  ++ LID   K G+L  A 
Sbjct: 219 SRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL++ + +  +  DV TY  +I+GL   G +D+A  +F  ME N   PN + + TLIHGF
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +       +++ ++M +K V+ +    ++++ 
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQ 371



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 1/238 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CKN+ +  A+ L+++M + G +P+VV +N L  GL EI +   A  L  +M +  
Sbjct: 194 LIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRR 253

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  ID   K G ++E+ EL+  +  +    D+  Y  LI+GLC  G L+ A 
Sbjct: 254 IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEAR 313

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ + R     + V Y+ +IHG     +++    +F +M +  V  N IT+  LI G+
Sbjct: 314 QMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGY 373

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
             +  P    E+ ++M  +   PD    ++++D L  N     +L  F  + R+ E+D
Sbjct: 374 CLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFE-YMRKREMD 430



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 111/220 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  C + +   A     +M+  G +PD+V   +L  G    +++E A  LFD++   
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYT  I  LCKN ++  +VELF  +       ++  Y+ L+ GLC+ GR   A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+T++ +I      G++ +A +L+  M + +V P+V T+G+LI+G
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                   +  ++ + M+     P+  I + ++    K++
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSK 342



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL NG   N +   AL+L++ M+     P ++    L   + ++++ +    LF++MQ  
Sbjct: 54  ILRNGL-HNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQIL 112

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T  I +  +C +     +      +  L  E D+  ++ L++G C   R+E A
Sbjct: 113 GIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDA 172

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +       +VVTY+ +I  L  +  ++ A +LF  M  N   PNV+T+  L+ G
Sbjct: 173 IALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTG 232

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              I        LL  M ++ + P+    + ++D   K
Sbjct: 233 LCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVK 270



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 70/127 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI GYC     + A  ++++M S+   PD+  +N L  GL    +VE+A  +F+ M++ 
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TYTI I G+CK G + ++ +LF +L     + ++  Y+ +I G C+ G +  A
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487

Query: 121 LELFHSL 127
             LF  +
Sbjct: 488 DSLFKKM 494



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C N ++E AL ++  M  + +  ++V +  +  G+ ++ +VE AF LF  +   
Sbjct: 403 VLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSK 462

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  +  TYT  I G C+ G I E+  LF+ ++
Sbjct: 463 GMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G CK  ++E A +L+  + SKG+KP+V+ + T+  G      +  A  LF +M+ D
Sbjct: 438 IIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED 497

Query: 61  GVAADTRTY 69
           G   +   Y
Sbjct: 498 GFLPNESVY 506


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 119/204 (58%), Gaps = 2/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK K ++ A++L+ EM  K + P+ +  N+L  GL +  ++   + L D+M+  
Sbjct: 354 IMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDR 413

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              AD  TY+  ID LCKN ++ +++ LF+ +   + + D+  Y+ LIDGLCK GRL+IA
Sbjct: 414 SQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIA 473

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            E+F H L +G  + D+ TY++MI G    G  D+A  L   ME+N   PN ITF  +I 
Sbjct: 474 QEVFQHLLIKGYHL-DIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIIC 532

Query: 180 GFIRINEPSKVIELLHKMKEKNVM 203
                +E  K  +LL +M  + ++
Sbjct: 533 ALFEKDENDKAEKLLREMIARGLL 556



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 118/219 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CKNK +  A NLYSEM +K I P+VV + TL  G   +  +  A  L +EM+  
Sbjct: 214 IIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLK 273

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T++I ID L K G +  +  +   +     + D+  Y+ L+DG      ++ A
Sbjct: 274 NINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHA 333

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F+S+ +  +   V +Y+IMI GL     +D+A  LF +M+   V PN ITF +LI G
Sbjct: 334 KYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDG 393

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +    + V +L+ KM++++ + D    S ++D L KN
Sbjct: 394 LCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKN 432



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E + A+ L   +  + IKPDVV++N +   L +   V  A  L+ EM    
Sbjct: 180 LINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQ 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I G C  G ++E+V L   +++     D+  +S LID L K G+++ A 
Sbjct: 240 IYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAK 299

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DVVTY+ ++ G +   ++  A  +F  M ++ V P V ++  +I G 
Sbjct: 300 IVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGL 359

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + I L  +MK KNV+P+    + ++D L K+
Sbjct: 360 CKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKS 397



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 103/183 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+   K  +++ A  + + M+   +KPDVV +N+L  G F +++V+ A  +F+ M + 
Sbjct: 284 ILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQS 343

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV    ++YTI IDGLCK   + E++ LF  ++      +   ++ LIDGLCKSGR+   
Sbjct: 344 GVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYV 403

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +     +ADV+TYS +I  L  +  +D+A  LF  M    + P++ T+  LI G
Sbjct: 404 WDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDG 463

Query: 181 FIR 183
             +
Sbjct: 464 LCK 466



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K +    A++L   +  KGI  D+V  N L      + Q+  +F +   + + G
Sbjct: 75  ILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRG 134

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T T  I GLC  G + ++++    +  L+ +LD  +Y  LI+GLCK G  + A+
Sbjct: 135 YHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAI 194

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  +L    +  DVV Y+I+I  L  +  + +A +L+ +M    + PNV+T+ TLI+GF
Sbjct: 195 QLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGF 254

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    + + LL++MK KN+ PD    SI++D L K
Sbjct: 255 CIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGK 291



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   E++ AL  + ++++   + D + + TL  GL +I + + A +L   ++   
Sbjct: 145 LIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERS 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y I ID LCKN  + E+  L+  +   +   ++  Y+ LI G C  G L  A+
Sbjct: 205 IKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAV 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  DV T+SI+I  L  +G+M  A  +   M +  V P+V+T+ +L+ G+
Sbjct: 265 ALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGY 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
             +NE      + + M +  V P     +I++D L K ++   ++  F      EE+   
Sbjct: 325 FLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLF------EEMKHK 378

Query: 242 NV 243
           NV
Sbjct: 379 NV 380


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+ ++++    LY EM   G+KPDV  +  L  G     ++E A K+F+EM+  G
Sbjct: 226 LISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   +T  ID  CK G +   ++L++ +R+     D+ AY+ L++GLC++  L+ A 
Sbjct: 286 VNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAE 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  D VTY+ +I G   DG++D A D+   M E  V+ + +T+  LI G 
Sbjct: 346 SIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGL 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   P     +L +M E  + PD +  ++V+D   +
Sbjct: 406 SKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCR 442



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 9/240 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK   +   ++LY +M  +G+ PD+V +N L  GL     ++ A  + +EM+  G
Sbjct: 296 LIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK+G +  ++++ + +   +  LD   Y+ LI GL K+GR   A 
Sbjct: 356 LKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAE 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  D  TY+++I      G +     L  +M+     P V+T+  +++G 
Sbjct: 416 RVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---------EISLNSLPSFTVH 232
            ++ +      LLH M    V PD    +I++D   K+         E S   +P F V+
Sbjct: 476 CKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELESSKGMVPDFAVY 535



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 100/205 (48%), Gaps = 1/205 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A   Y ++L  G+ P+  + N L      + ++  A K+FDEM+R  V     T+   I 
Sbjct: 170 AYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLIS 228

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G+C+   +     L++ +  +  + D+  Y  LI G C++GR+E A+++F+ +    +  
Sbjct: 229 GMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNP 288

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + V ++ +I     +G ++   DL+ DM    V P+++ +  L++G  R         ++
Sbjct: 289 NAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIV 348

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +MK   + PD    + ++D   K+
Sbjct: 349 EEMKNAGLKPDKVTYTTLIDGCCKD 373



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +C+  +++    L  EM +KG KP VV +N +  GL ++ Q++ A  L   M   
Sbjct: 435 MVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNI 494

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           GV+ D  TY I +DG CK+G +  S EL  +  ++    D   Y+ LI  L K
Sbjct: 495 GVSPDDITYNILLDGQCKHGKVANSEELESSKGMVP---DFAVYTSLISELAK 544


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 115/205 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GYC+N  +  AL +  EML +G   DV+ +NT+  GL +   +  A KLFDEM   
Sbjct: 146 VLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVER 205

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+T  I G C++G + +++ LF T+     + DI AY+ LIDG CK G +E A
Sbjct: 206 GALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKA 265

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +  + +TY I+I+   + G + +A  L+  M E  + P ++T  T+I G
Sbjct: 266 SELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKG 325

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R  + SK  E L +M  K V PD
Sbjct: 326 YCRSGDSSKADEFLGRMIAKGVAPD 350



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 111/208 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+      A  ++ EML +G+ PD+V  ++L         +++A   F +M++ G+  D 
Sbjct: 82  CRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDN 141

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YT+ + G C+NG ++E++++   +    C LD+ AY+ +++GLCK   L  A +LF  
Sbjct: 142 VIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDE 201

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +     + D  T++ +IHG   DG M KA  LF  M +  + P+++ + TLI GF ++ E
Sbjct: 202 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 261

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVD 214
             K  EL   M  + + P+     I+++
Sbjct: 262 MEKASELWDGMISRKIFPNHITYGILIN 289



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK      A  +  EML+ G+ PD   +NTL +          A ++F EM R G
Sbjct: 42  IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG 101

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  +    +N ++ +++  FR ++      D   Y+ L+ G C++G +  AL
Sbjct: 102 VVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 161

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     V DV+ Y+ +++GL  +  +  A  LF +M E    P+  TF TLIHG 
Sbjct: 162 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 221

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +K + L   M ++N+ PD    + ++D   K
Sbjct: 222 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCK 258



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + +N+ ++ AL  + +M   G+ PD VI+  L  G      +  A K+ DEM   G   D
Sbjct: 116 FSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLD 175

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
              Y   ++GLCK   + ++ +LF  +       D   ++ LI G C+ G +  AL LF 
Sbjct: 176 VIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFG 235

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
           ++ +  +  D+V Y+ +I G    G+M+KA +L+  M    + PN IT+G LI+ +  + 
Sbjct: 236 TMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVG 295

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVV 213
             S+   L   M EK + P     + V+
Sbjct: 296 HVSEAFRLWDVMIEKGIKPTLVTCNTVI 323



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 91/191 (47%)

Query: 31  VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
           +V +NTL         +E AF++ + M   G+     TY   I+GLCK G    +  +  
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            +  +    D   Y+ L+   C+      A E+F  + R  +V D+V++S ++     + 
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            +D+A   F DM++  + P+ + +  L+HG+ R     + +++  +M E+  + D    +
Sbjct: 121 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 211 IVVDLLAKNEI 221
            +++ L K ++
Sbjct: 181 TILNGLCKEKM 191



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 74/159 (46%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   I   C+ G + E+ E+  ++     +  +  Y+ +I+GLCK GR   A  +   +
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L  D  TY+ ++          +A ++F +M    V P++++F +L+  F R    
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            + +     MK+  ++PD  I ++++    +N   L +L
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 161



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 35/74 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC    +  A  L+  M+ KGIKP +V  NT+  G        +A +    M   
Sbjct: 286 ILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAK 345

Query: 61  GVAADTRTYTIFID 74
           GVA D  +Y   I+
Sbjct: 346 GVAPDHISYNTLIN 359


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 115/205 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C+   +  AL +  EM++ G  PDVV +NTL  GL +  ++  A +L +EM+  
Sbjct: 339 MVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKER 398

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I G C++G I ++++ F T+   +   DI  Y+ LIDG+C+ G L  A
Sbjct: 399 GVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKA 458

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +  + VTYSI+I      GQ+D A     +M    + PN++T+ ++I G
Sbjct: 459 NELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKG 518

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R    SK  + L KM+   VMPD
Sbjct: 519 YCRSGNVSKGQQFLPKMRHDKVMPD 543



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 117/215 (54%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQR 59
           +LI G+C+  E+E AL  Y EM  + + PDVV  + L IGLF    +++ A +   EM+ 
Sbjct: 269 MLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCL-IGLFTRRGEMDHAAEYLREMRE 327

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT+ I G C+ G ++E++ +   +    C  D+  Y+ L++GLCK  RL  
Sbjct: 328 FGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSD 387

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A EL + +    +  D+ T++ +IHG   DG ++KA   F  + +  + P+++T+ TLI 
Sbjct: 388 AEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLID 447

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  R  +  K  EL   M  + + P+    SI++D
Sbjct: 448 GMCRQGDLGKANELWDDMHSREIFPNHVTYSILID 482



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 127/254 (50%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++   +  ++E A+ L   M+SKGIKP +V +N++  GL    + ++A ++F  M   
Sbjct: 199 VMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDAC 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D R++ + I G C+ G + E++  ++ +R  +   D+ ++SCLI    + G ++ A
Sbjct: 259 GVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHA 318

Query: 121 LEL------FHSLPRGVL-----------------------------VADVVTYSIMIHG 145
            E       F  +P GV+                             + DVVTY+ +++G
Sbjct: 319 AEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNG 378

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  + ++  A +L  +M+E  V P++ TF TLIHG+ R     K ++    + ++ + PD
Sbjct: 379 LCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438

Query: 206 ASIVSIVVDLLAKN 219
               + ++D + + 
Sbjct: 439 IVTYNTLIDGMCRQ 452



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ YCK  +      + SEM  + + PDVV HN +    F    VE A  L D M   
Sbjct: 164 IMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSK 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   + GL +NG   ++ E+FR +       D+++++ LI G C++G LE A
Sbjct: 224 GIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEA 283

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA------------ 168
           L  +  +    +  DVV++S +I      G+MD A +   +M E  +             
Sbjct: 284 LRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGG 343

Query: 169 -----------------------PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                                  P+V+T+ TL++G  +    S   ELL++MKE+ V PD
Sbjct: 344 FCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPD 403

Query: 206 ASIVSIVV 213
               + ++
Sbjct: 404 LCTFTTLI 411



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 35/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
           LI+GYC++  IE AL  +  +  + ++PD+V +NTL  G+                    
Sbjct: 410 LIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSRE 469

Query: 42  -FEIH--------------QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
            F  H              QV+ AF   DEM   G+  +  TY   I G C++G + +  
Sbjct: 470 IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQ 529

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +    +R  K   D+  Y+ LI G  K G++  A  L   +    +  D VTY+++I G 
Sbjct: 530 QFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGF 589

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              G M +A  ++  M    + P+  T+ ++I+G +      K  +L  +M +K + PD
Sbjct: 590 SVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+  +++ A     EM++KGI P+++ +N++  G      V +  +   +M+ D
Sbjct: 479 ILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD 538

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TY   I G  K G + E+  L + +     + D   Y+ +I G    G ++ A
Sbjct: 539 KVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEA 598

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             ++  +    +  D  TY  MI+G    G   K+  L  +M +  +AP+
Sbjct: 599 DWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 35/238 (14%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L++ S +L+    P   + + L     +  +   AF+ F  +    V          +  
Sbjct: 74  LDIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAA 133

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + G+   + + +R +     E++    + ++   CK+ +      +   + +  +  D
Sbjct: 134 LSRAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPD 193

Query: 136 VVTYSIMI-----------------------------------HGLYNDGQMDKAHDLFL 160
           VVT+++M+                                    GL  +G+ DKA ++F 
Sbjct: 194 VVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFR 253

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            M+   VAP+V +F  LI GF R  E  + +    +M+ + V PD    S ++ L  +
Sbjct: 254 AMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTR 311


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 119/219 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +C+  ++  A  +++ M+ +G +PD+V  NTL  G      V  A KLFD +   
Sbjct: 299 VLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFER 358

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +YTI I G CK   I E+V LF  +R     LDI  YS LIDGLCKSGR+  A
Sbjct: 359 GILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYA 418

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF ++       +V+TY+I+I        +D   +LF  M    + P V+T+  LI+G
Sbjct: 419 WELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILING 478

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +     + + LL  M+ KN+ PD+   + + D L K+
Sbjct: 479 YCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKS 517



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 112/219 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C +  +  A  L+  +  +GI PDV  +  L IG  +  +++ A  LF+EM+   
Sbjct: 335 LISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKN 394

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  IDGLCK+G I  + ELF T+       ++  Y+ LID  CK   +++ +
Sbjct: 395 MVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGI 454

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    L   V+TY+I+I+G     ++ +A +L   M+   +AP+ IT+ +L  G 
Sbjct: 455 ELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGL 514

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +    S   EL   M       D +  ++++D   K +
Sbjct: 515 CKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQ 553



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 111/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+  +      L  EM++K I P+V   N L        ++  A  +F+ M + G
Sbjct: 265 LIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRG 324

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I G C +G ++E+ +LF T+       D+ +Y+ LI G CK  R++ A+
Sbjct: 325 QQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAV 384

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +V D+V YS +I GL   G++  A +LF  +  +   PNVIT+  LI  F
Sbjct: 385 SLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAF 444

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +I +    IEL   M  K + P     +I+++   K++
Sbjct: 445 CKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSK 483



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 98/186 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYCK K I+ A++L++EM  K +  D+V++++L  GL +  ++  A++LF  +  D
Sbjct: 369 ILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINND 428

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY I ID  CK   I   +ELF+ +        +  Y+ LI+G CKS R+  A
Sbjct: 429 GPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREA 488

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    L  D +TY+ +  GL   G++  A +LF  M       +V T+  L+  
Sbjct: 489 MNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDA 548

Query: 181 FIRINE 186
           F +  +
Sbjct: 549 FCKAQD 554



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I    K K    A++L  +M+ KG+ P +   +        + ++  AF +   + + G
Sbjct: 90  IIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRG 149

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T T  + GLC NG + ++++    +      LD   Y  LI+GLCK GR   A 
Sbjct: 150 YQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAF 209

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +   V+  ++V Y+++I     D    KA DL+L + +  + P+++T+ +LI GF
Sbjct: 210 QLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGF 269

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  +V +L+ +M  KN+ P+    ++++D   +
Sbjct: 270 CRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCR 306



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 108/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C N E++ A++ +  + ++G+  D V + TL  GL +I +   AF+L  EM+   
Sbjct: 160 VMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQV 219

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y + ID  CK+    ++ +L+  +  +  + DI  Y+ LI G C++G+     
Sbjct: 220 VKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVK 279

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  +V T++++I      G+M +A  +F  M +    P+++TF TLI G 
Sbjct: 280 QLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGH 339

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  +  +L   + E+ ++PD    +I++
Sbjct: 340 CLHGNVLEARKLFDTVFERGILPDVWSYTILI 371



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK      A  L  EM  + +KP++VI+N +     +     +A  L+ ++   G
Sbjct: 195 LINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMG 254

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I G C+ G   E  +L   +       ++  ++ LID  C+ G++  A 
Sbjct: 255 IDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQ 314

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ + +     D+VT++ +I G    G + +A  LF  + E  + P+V ++  LI G+
Sbjct: 315 GMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGY 374

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L ++M+ KN++ D  + S ++D L K+
Sbjct: 375 CKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKS 412



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 97/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I IN YC   E+  A ++   +L +G +P+ +   T+  GL    +V++A    D +   
Sbjct: 124 IWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQ 183

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I+GLCK G  +++ +L + +     + +I  Y+ +ID  CK      A
Sbjct: 184 GMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKA 243

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  D++TY+ +I G    GQ  +   L  +M    + PNV TF  LI  
Sbjct: 244 RDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDA 303

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F R  +  +   + + M ++   PD
Sbjct: 304 FCRKGKMIEAQGMFNLMVKRGQQPD 328



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 35/214 (16%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           I+ A+ L++ +++    P V+  NT+   + ++     A  L  +M   GV     T +I
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
           +I+  C  G   E    F  L I+                               L RG 
Sbjct: 125 WINCYCHLG---EMGFAFSVLGIV-------------------------------LKRGY 150

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              ++   ++M  GL  +G++ KA D   ++    +  + + +GTLI+G  +I       
Sbjct: 151 QPNNITLTTVM-KGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAF 209

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +LL +M+ + V P+  I ++++D   K+E++  +
Sbjct: 210 QLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKA 243


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 6/206 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N + K K  E A  L  E L     P+ +++ T+  G  +  QV++AF+L DEM+  
Sbjct: 81  VLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKER 140

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   ++  I GLC+ G I E++E F+++   +C  ++  Y+ +++GLCK+ R++ A
Sbjct: 141 GVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG-EECSPNVITYNTVVNGLCKANRIDEA 199

Query: 121 LELFHSLPRGVLVA-----DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           LELF  + +    +     DV++YS +I  L    ++DKA++ F  M     APNV+T+ 
Sbjct: 200 LELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYS 259

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKN 201
           +LI G  +++ PS+ +ELL  MKEK 
Sbjct: 260 SLIDGLCKVDRPSECLELLLHMKEKG 285



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 127/237 (53%), Gaps = 8/237 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEM-----LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           ++NG CK   I+ AL L+ +M      S G +PDV+ ++T+   L +  +V++A++ F  
Sbjct: 186 VVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKR 245

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G A +  TY+  IDGLCK     E +EL   ++     ++I  ++ ++  L K+  
Sbjct: 246 MRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDE 305

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            E A + F  L +     +VVTY++ +HGL   G++D+A+ + L+M E+ V P+VIT+ +
Sbjct: 306 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSS 365

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
           +I GF +     K  ++  +M     +P       ++   ++++    S  +F VHE
Sbjct: 366 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK---KSREAFRVHE 419



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 102/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK       L L   M  KG   +++  N +   L++  + E+A + F+ + + G
Sbjct: 261 LIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSG 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + + GLCK G + E+  +   +   K   D+  YS +IDG CK+GR++ A 
Sbjct: 321 KKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +     +   VT+  ++HG     +  +A  +  DM      P + T+  L+   
Sbjct: 381 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +     +E+ HKMK K   PD +  + ++  L +
Sbjct: 441 CGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCR 477



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 103/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   KN E E A   +  +L  G KP+VV +N    GL +  +V+ A+++  EM    
Sbjct: 296 MLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG CK G + ++ ++F  + + +C      +  L+ G  +  +   A 
Sbjct: 356 VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAF 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     +  + TY++++  +     ++ A +++  M+     P+  T+  LI   
Sbjct: 416 RVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R     +  E L  M+  NV+P+ +I   +V++L K 
Sbjct: 476 CRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQ 513



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 96/216 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + ++G CK   ++ A  +  EM+   + PDV+ ++++  G  +  ++++A  +F  M   
Sbjct: 330 VAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVH 389

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  T+   + G  ++    E+  +   +        +Q Y+ L+D +C +  +E A
Sbjct: 390 ECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESA 449

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE++H + R     D  TY+ +I  L    ++D+A +    ME + V PN      L+  
Sbjct: 450 LEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEV 509

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  E  +   +L  + E    P      I+V+ L
Sbjct: 510 LCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 102/236 (43%), Gaps = 32/236 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK   ++ A ++++ M+     P  V   TL  G  E  +   AF++ ++M   G
Sbjct: 366 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                +TY + +D +C    +  ++E++  ++  K + D   Y+ LI  LC++ R++ A 
Sbjct: 426 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAK 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH-- 179
           E    +    +V +      ++  L   G++D+A  +  ++ E    P   TF  L+   
Sbjct: 486 EFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545

Query: 180 ----------------GFI--------------RINEPSKVIELLHKMKEKNVMPD 205
                           GF+              +  +P + +E++ +M  K V PD
Sbjct: 546 YLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPD 601



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 3/204 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  C    +E AL +Y +M  K  +PD   +  L   L    +V+ A +  D M+ D
Sbjct: 435 VLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEAD 494

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +       ++ LCK G + E+  +   +  + C+   + +  L++ L    + E A
Sbjct: 495 NVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAA 554

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L  S      VAD  TYS+ +  +   G+ D+A ++   M    V P+  T+  ++  
Sbjct: 555 SKLLRSPG---FVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRS 611

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
              ++     I    KM  +   P
Sbjct: 612 LCGLDRVESAIAEFEKMASRGCAP 635



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 3/176 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK  E++ A ++   ++  G +P       L   L+   + E A KL   ++  G
Sbjct: 506 LVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKL---LRSPG 562

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TY++ +  +CK G   E+VE+   + +     D   Y  ++  LC   R+E A+
Sbjct: 563 FVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAI 622

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             F  +        +VTY+++I    +    D+A  +F  M      P   T  TL
Sbjct: 623 AEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +  T +++++      + ++AH L  +  E    PN I + T+I+GF +  +  +  ELL
Sbjct: 75  NAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELL 134

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +MKE+ V  D  + S ++  L + 
Sbjct: 135 DEMKERGVKMDVLLHSTLIQGLCRK 159


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 115/205 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GYC+N  +  AL +  EML +G   DV+ +NT+  GL +   +  A KLFDEM   
Sbjct: 298 VLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVER 357

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+T  I G C++G + +++ LF T+     + DI AY+ LIDG CK G +E A
Sbjct: 358 GALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKA 417

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +  + +TY I+I+   + G + +A  L+  M E  + P ++T  T+I G
Sbjct: 418 SELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKG 477

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R  + SK  E L +M  K V PD
Sbjct: 478 YCRSGDSSKADEFLGRMIAKGVAPD 502



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 111/208 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+      A  ++ EML +G+ PD+V  ++L         +++A   F +M++ G+  D 
Sbjct: 234 CRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDN 293

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YT+ + G C+NG ++E++++   +    C LD+ AY+ +++GLCK   L  A +LF  
Sbjct: 294 VIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDE 353

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +     + D  T++ +IHG   DG M KA  LF  M +  + P+++ + TLI GF ++ E
Sbjct: 354 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 413

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVD 214
             K  EL   M  + + P+     I+++
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILIN 441



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 114/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C++  +  AL+L+  M  + IKPD+V +NTL  G  ++ ++E+A +L+D M    
Sbjct: 369 LIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRK 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY I I+  C  G++ E+  L+  +     +  +   + +I G C+SG    A 
Sbjct: 429 IFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKAD 488

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +    +  D ++Y+ +I+G   +  MDKA      ME+  + P++IT+  +++GF
Sbjct: 489 EFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGF 548

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R     +   +L KM EK + PD S  + +++
Sbjct: 549 CRQGRMQEAELVLRKMIEKGINPDRSTYTALIN 581



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK      A  +  EML+ G+ PD   +NTL +          A ++F EM R G
Sbjct: 194 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG 253

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  I    +N ++ +++  FR ++      D   Y+ L+ G C++G +  AL
Sbjct: 254 VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     V DV+ Y+ +++GL  +  +  A  LF +M E    P+  TF TLIHG 
Sbjct: 314 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 373

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +K + L   M ++N+ PD    + ++D   K
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCK 410



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 104/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + +N+ ++ AL  + +M   G+ PD VI+  L  G      +  A K+ DEM   G
Sbjct: 264 LIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   ++GLCK   + ++ +LF  +       D   ++ LI G C+ G +  AL
Sbjct: 324 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKAL 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++ +  +  D+V Y+ +I G    G+M+KA +L+  M    + PN IT+G LI+ +
Sbjct: 384 SLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAY 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +   S+   L   M EK + P     + V+
Sbjct: 444 CSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 475



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 108/220 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y + +++      +  + SKG    +   N+L  GL +I  VE A+++  E+ R 
Sbjct: 53  LLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRS 112

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T  I ++ LCK+G   +       +       D+  Y+ LI   C+ G LE A
Sbjct: 113 GIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEA 172

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ +S+    L   + TY+ +I+GL   G+  +A  + ++M    ++P+  T+ TL+  
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVE 232

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R +  S+  E+  +M  + V+PD    S ++ + ++N 
Sbjct: 233 SCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNR 272



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 107/221 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CK+ + +   +  SEM   GI  D+V +NTL         +E AF++ + M   
Sbjct: 123 IMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADK 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I+GLCK G    +  +   +  +    D   Y+ L+   C+      A
Sbjct: 183 GLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEA 242

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  + R  +V D+V++S +I     +  +D+A   F DM++  + P+ + +  L+HG
Sbjct: 243 KEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHG 302

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           + R     + +++  +M E+  + D    + +++ L K ++
Sbjct: 303 YCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKM 343



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 105/225 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K   +E A  ++ E++  GI+ +V   N +   L +  + +       EM+ +G
Sbjct: 89  LLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNG 148

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I   C+ G + E+ E+  ++     +  +  Y+ +I+GLCK GR   A 
Sbjct: 149 IYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAK 208

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  D  TY+ ++          +A ++F +M    V P++++F +LI  F
Sbjct: 209 GILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVF 268

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            R     + +     MK+  ++PD  I ++++    +N   L +L
Sbjct: 269 SRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC    +  A  L+  M+ KGIKP +V  NT+  G        +A +    M   
Sbjct: 438 ILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAK 497

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D  +Y   I+G  +   + ++      +       DI  Y+ +++G C+ GR++ A
Sbjct: 498 GVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEA 557

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             +   +    +  D  TY+ +I+G      +++A     +M +   AP+
Sbjct: 558 ELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYC++ +   A      M++KG+ PD + +NTL  G      +++AF   ++M+++G
Sbjct: 474 VIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEG 533

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY + ++G C+ G + E+  + R +       D   Y+ LI+G      L  A 
Sbjct: 534 LLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAF 593

Query: 122 ELFHS--LPRGVLVADV 136
             FH   L RG    DV
Sbjct: 594 R-FHDEMLQRGFAPDDV 609


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 118/214 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+C+N  +  AL +  EML++G   DVV +NT   GL +      A  LF+EM   
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER 496

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+T  I G CK+G + +++ LF  +     + D   Y+ LIDG CK+G +  A
Sbjct: 497 GMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRA 556

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  + R  ++ D ++Y  +++G  + G + +A +L   M E  + PN++T  TLI G
Sbjct: 557 KELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           + R  +  K  E L KM    ++PD+   + ++D
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 106/199 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+   I  A  ++ EM  +G+ PD+V  ++L   L     + +A   F EM+R G+  D 
Sbjct: 373 CRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YTI IDG C+NG + +++++   +    C +D+  Y+  ++GLCK      A  LF+ 
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +V D  T++ +I G   DG MDKA +LF  M    + P+ +T+ TLI GF +  E
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 187 PSKVIELLHKMKEKNVMPD 205
             +  EL   M  K+++PD
Sbjct: 553 MGRAKELWDDMIRKDIIPD 571



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 114/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK+  ++ ALNL+  M+   +KPD V +NTL  G  +  ++ RA +L+D+M R  
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   ++G C +G + E++ L   +       ++   + LI G C+SG +  A 
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAY 627

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +    ++ D  +Y+ +I G   +  ++KA  L  +ME+  +  N+IT+  +++GF
Sbjct: 628 EYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF 687

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  ++L KM E  + PD +  S +++
Sbjct: 688 CAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G CK  + + A ++  EML  G+ P+   +NTL + +     +  A ++FDEM R G
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  I  L +NG++ +++  FR +       D   Y+ LIDG C++G L  AL
Sbjct: 393 VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++    L RG  + DVVTY+  ++GL        A  LF +M E  + P+  TF TLI G
Sbjct: 453 KMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRG 511

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     K + L   M   N+ PD    + ++D   K
Sbjct: 512 YCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCK 549



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 113/235 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y + K++      +  +  KG+   +   N L  GL     V+ A++++ E+ R 
Sbjct: 192 LLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRG 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T  I ++ LCK+      +     +       DI  Y+ LI+  C+ G +E A
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L +S     +   ++TY+ +++GL   G+ D+A D+ ++M +  + PN  T+ TL+  
Sbjct: 312 FQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVE 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             R +   +  E+  +M  + V+PD    S ++ +LA+N     +L  F   ER 
Sbjct: 372 ICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 107/221 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CK+++ E  +   S+M  KG+  D+V +NTL         VE AF+L +     
Sbjct: 262 IMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSR 321

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   + GLCK G    + ++   +  L    +   Y+ L+  +C+   +  A
Sbjct: 322 GMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEA 381

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  + R  ++ D+V++S +I  L  +G + +A   F +ME + + P+ + +  LI G
Sbjct: 382 QEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F R    S  +++  +M  +    D    +  ++ L K ++
Sbjct: 442 FCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  +   ++ A  +Y E++  GI+ +V   N +   L +  + E       +M+  G
Sbjct: 228 LLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKG 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY   I+  C+ G + E+ +L  +      E  +  Y+ ++ GLCK G+ + A 
Sbjct: 288 VFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAK 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  L  +  TY+ ++  +     + +A ++F +M    V P++++F +LI   
Sbjct: 348 DVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R     + +    +M+   ++PD  I +I++D   +N
Sbjct: 408 ARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 87/169 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+C +  +  ALNL  +ML KGI+P++V  NTL  G      + +A++   +M  +G
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D+ +Y   IDG  K   + ++  L   +     + +I  Y+ +++G C  G+++ A 
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           ++   +    +  D  TYS +I+G  +   M +A     +M +  + P+
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 37/67 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG+C   +++ A  +  +M+  GI PD   +++L  G      ++ AF+  DEM + 
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741

Query: 61  GVAADTR 67
           G+  D R
Sbjct: 742 GLVPDDR 748


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 118/204 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C++ + + A+ ++ + L KG++P ++++NTL  GL +   +  A +L +EM   G
Sbjct: 441 LVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKG 500

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + I+GLCK G + ++  L        C  DI  Y+ L+DG C+  +L+ A+
Sbjct: 501 CKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAI 560

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    +  DV+TY+ +++GL    + ++  ++F  M E   APN+IT+ T+I   
Sbjct: 561 ELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESL 620

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               + ++ ++LL +MK K + PD
Sbjct: 621 CNSKKVNEAVDLLGEMKSKGLTPD 644



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK   +  A +L  + ++KG  PD+  +NTL  G     +++ A +L + M   
Sbjct: 510 LIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQ 569

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   ++GLCK     E +E+F+ +    C  +I  Y+ +I+ LC S ++  A
Sbjct: 570 GMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEA 629

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIH 179
           ++L   +    L  DVV++  +I G    G +D A+ LF  ME+   V+    T+  +I 
Sbjct: 630 VDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIIS 689

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F         + L  +MK+    PD     +++D   K
Sbjct: 690 AFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCK 728



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK   +  A  +  + + KG KPD   + +L  G  +    ++A  +F +    G
Sbjct: 406 IIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I GLC+ G I+ +++L   +    C+ DI  Y+ +I+GLCK G L  A 
Sbjct: 466 LRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDAN 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L         + D+ TY+ ++ G     ++D A +L   M    + P+VIT+ TL++G 
Sbjct: 526 HLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGL 585

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +  +V+E+   M EK   P+    + +++ L  ++
Sbjct: 586 CKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSK 624



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 36/241 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+  +++ A+ L + M S+G+ PDV+ +NTL  GL +  + E   ++F  M   G
Sbjct: 546 LVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG 605

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--- 118
            A +  TY   I+ LC +  + E+V+L   ++      D+ ++  LI G CK G L+   
Sbjct: 606 CAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAY 665

Query: 119 ---------------------------------IALELFHSLPRGVLVADVVTYSIMIHG 145
                                            +AL LF  + +     D  TY ++I G
Sbjct: 666 GLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDG 725

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G +++ +   L+  E    P++ TFG +++     ++  + + ++H M +K+++PD
Sbjct: 726 FCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPD 785

Query: 206 A 206
            
Sbjct: 786 T 786



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 114/257 (44%), Gaps = 35/257 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I G CK   ++ A+ L   +  +G++PDVV +NT+  GL    +V  A +   +M   
Sbjct: 335 IFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNG 394

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL--------FRTLRILKCEL------------- 99
           G   +  TY   IDG CK G +V++  +        F+      C L             
Sbjct: 395 GFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454

Query: 100 --------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                          I  Y+ LI GLC+ G +  AL+L + +       D+ TY+++I+G
Sbjct: 455 MAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIING 514

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A+ L  D       P++ T+ TL+ G+ R  +    IEL+++M  + + PD
Sbjct: 515 LCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPD 574

Query: 206 ASIVSIVVDLLAKNEIS 222
               + +++ L K   S
Sbjct: 575 VITYNTLLNGLCKTAKS 591



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 2/184 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I  +C+      AL L   M   G   + V + T+  G +E    +RA +LFDEM   
Sbjct: 230 IRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLEC 289

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +  D  T+   +  LCK G+++ES  LF + L+   C  ++  ++  I GLCK G L+ 
Sbjct: 290 CLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCP-NLFTFNIFIQGLCKEGSLDR 348

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ L   + R  L  DVVTY+ +I GL    ++ +A +    M      PN  T+ ++I 
Sbjct: 349 AVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIID 408

Query: 180 GFIR 183
           G+ +
Sbjct: 409 GYCK 412



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+ +  + + A  L+ EML   + PDV   N L   L +   V  + +LFD++ + G
Sbjct: 266 VVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  T+ IFI GLCK G +  +V L   +       D+  Y+ +I GLC+  R+  A 
Sbjct: 326 VCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAE 385

Query: 122 ELFHSL--------------------PRGVLV---------------ADVVTYSIMIHGL 146
           E  H +                     +G++V                D  TY  +++G 
Sbjct: 386 ECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGF 445

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             DG  D+A  +F D     + P++I + TLI G  +       ++L+++M EK   PD 
Sbjct: 446 CQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDI 505

Query: 207 SIVSIVVDLLAK 218
              +++++ L K
Sbjct: 506 WTYNLIINGLCK 517



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 98/213 (46%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           Y +  +I+ A++ +  M      P V  +N +   L E     +A K++  M+   V +D
Sbjct: 165 YGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESD 224

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TYTI I   C+ G    ++ L R + +L C  +  AY  ++ G  + G  + A ELF 
Sbjct: 225 VYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFD 284

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    L  DV T++ ++H L   G + ++  LF  + +  V PN+ TF   I G  +  
Sbjct: 285 EMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEG 344

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + + LL  +  + + PD    + V+  L +
Sbjct: 345 SLDRAVRLLGCVSREGLRPDVVTYNTVICGLCR 377



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLF--------EIHQVERAFKLFDEMQRDGVAADTRT 68
           NL SEM S        + NTL  G++           +++ A   F+ M          +
Sbjct: 140 NLLSEMRSN-------LDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYS 192

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y   ++ L + GY  ++ +++  ++  K E D+  Y+  I   C++GR   AL L  ++P
Sbjct: 193 YNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMP 252

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                ++ V Y  ++ G Y  G  D+A +LF +M E  + P+V TF  L+H   +     
Sbjct: 253 VLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVL 312

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   L  K+ ++ V P+    +I +  L K
Sbjct: 313 ESERLFDKVLKRGVCPNLFTFNIFIQGLCK 342



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 68/148 (45%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           + G I E+V+ F  + +  C+  + +Y+ +++ L + G    A +++  +    + +DV 
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+I I      G+   A  L  +M       N + + T++ GF    +  +  EL  +M
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 198 KEKNVMPDASIVSIVVDLLAKNEISLNS 225
            E  + PD +  + +V  L K    L S
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLES 314


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 118/214 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+C+N  +  AL +  EML++G   DVV +NT   GL +      A  LF+EM   
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER 496

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+T  I G CK+G + +++ LF  +     + D   Y+ LIDG CK+G +  A
Sbjct: 497 GMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRA 556

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  + R  ++ D ++Y  +++G  + G + +A +L   M E  + PN++T  TLI G
Sbjct: 557 KELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           + R  +  K  E L KM    ++PD+   + ++D
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 106/199 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+   I  A  ++ EM  +G+ PD+V  ++L   L     + +A   F EM+R G+  D 
Sbjct: 373 CRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YTI IDG C+NG + +++++   +    C +D+  Y+  ++GLCK      A  LF+ 
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +V D  T++ +I G   DG MDKA +LF  M    + P+ +T+ TLI GF +  E
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 187 PSKVIELLHKMKEKNVMPD 205
             +  EL   M  K+++PD
Sbjct: 553 MGRAKELWDDMIRKDIIPD 571



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 114/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK+  ++ ALNL+  M+   +KPD V +NTL  G  +  ++ RA +L+D+M R  
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   ++G C +G + E++ L   +       ++   + LI G C+SG +  A 
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAY 627

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +    ++ D  +Y+ +I G   +  ++KA  L  +ME+  +  N+IT+  +++GF
Sbjct: 628 EYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF 687

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  ++L KM E  + PD +  S +++
Sbjct: 688 CAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G CK  + + A ++  EML  G+ P+   +NTL + +     +  A ++FDEM R G
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  I  L +NG++ +++  FR +       D   Y+ LIDG C++G L  AL
Sbjct: 393 VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++    L RG  + DVVTY+  ++GL        A  LF +M E  + P+  TF TLI G
Sbjct: 453 KMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRG 511

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     K + L   M   N+ PD    + ++D   K
Sbjct: 512 YCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCK 549



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 113/235 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y + K++      +  +  KG+   +   N L  GL     V+ A++++ E+ R 
Sbjct: 192 LLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRG 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T  I ++ LCK+      +     +       DI  Y+ LI+  C+ G +E A
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L +S     +   ++TY+ +++GL   G+ D+A D+ ++M +  + PN  T+ TL+  
Sbjct: 312 FQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVE 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             R +   +  E+  +M  + V+PD    S ++ +LA+N     +L  F   ER 
Sbjct: 372 ICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 107/221 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CK+++ E  +   S+M  KG+  D+V +NTL         VE AF+L +     
Sbjct: 262 IMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSR 321

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   + GLCK G    + ++   +  L    +   Y+ L+  +C+   +  A
Sbjct: 322 GMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEA 381

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  + R  ++ D+V++S +I  L  +G + +A   F +ME + + P+ + +  LI G
Sbjct: 382 QEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F R    S  +++  +M  +    D    +  ++ L K ++
Sbjct: 442 FCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  +   ++ A  +Y E++  GI+ +V   N +   L +  + E       +M+  G
Sbjct: 228 LLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKG 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY   I+  C+ G + E+ +L  +      E  +  Y+ ++ GLCK G+ + A 
Sbjct: 288 VFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAK 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  L  +  TY+ ++  +     + +A ++F +M    V P++++F +LI   
Sbjct: 348 DVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R     + +    +M+   ++PD  I +I++D   +N
Sbjct: 408 ARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 87/169 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+C +  +  ALNL  +ML KGI+P++V  NTL  G      + +A++   +M  +G
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D+ +Y   IDG  K   + ++  L   +     + +I  Y+ +++G C  G+++ A 
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           ++   +    +  D  TYS +I+G  +   M +A     +M +  + P+
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 37/67 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG+C   +++ A  +  +M+  GI PD   +++L  G      ++ AF+  DEM + 
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741

Query: 61  GVAADTR 67
           G+  D R
Sbjct: 742 GLVPDDR 748


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 127/232 (54%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C   ++  AL+L  +M+S G+ PD+V  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 430 LIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 489

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL++ +       +   YS +I+G
Sbjct: 490 MDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMING 549

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       DVVT++ ++ G    G++D   +LF +M    +  +
Sbjct: 550 LCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVAD 609

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLIHGF ++   +  +++  +M    V PD  +I S++  L +K E+
Sbjct: 610 AITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEEL 661



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 11/216 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC  K I+    L  EM   G+  D   +NTL  G   +  +  A  L  +M   G
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG 454

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-----------IQAYSCLIDG 110
           V  D  T    +DGLC NG + +++E+F+ ++  K +LD           +Q Y+ LI G
Sbjct: 455 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L   G+   A EL+  +P   +V + +TYS MI+GL    ++D+A  +F  M   + +P+
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPD 574

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           V+TF TL+ G+ +       +EL  +M  + ++ DA
Sbjct: 575 VVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADA 610



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G +PDVV  +TL  GL    +V  A  LF +M R 
Sbjct: 117 ILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRP 176

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     T+T  ++GLC+ G +VE+V L   +     + +   Y  ++DG+CK G    A
Sbjct: 177 NVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSA 232

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     +  +VV YS +I GL+ DG+   AH+L+ +M+E  + P++ T+  +I 
Sbjct: 233 LNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMID 292

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S+   LL +M E+ + P+    S +++   K
Sbjct: 293 GFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVK 331



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 104/206 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C +     A  L  EML + I P+VV ++ L     +  +   A +L+DEM   G
Sbjct: 290 MIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRG 349

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   IDG CK   +  +  +F  +    C  D+  ++ LIDG C + R++   
Sbjct: 350 IIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGT 409

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    LVAD  TY+ +IHG    G ++ A DL   M  + V P+++T  TL+ G 
Sbjct: 410 ELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 469

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++  +  DAS
Sbjct: 470 CDNGKLKDALEMFKAMQKSKMDLDAS 495



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   ALNL  +M     IKP+VVI++ +  GL++  +   A  L+ EMQ  
Sbjct: 219 IVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEK 278

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   IDG C +G   E+  L + +   K   ++  YS LI+   K  +   A
Sbjct: 279 GIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEA 338

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TY+ MI G     ++D A  +F  M     +P+V TF TLI 
Sbjct: 339 EELYDEMLPRGI-IPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLID 397

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+          ELLH+M E  ++ D +  + ++
Sbjct: 398 GYCGAKRIDDGTELLHEMTETGLVADTTTYNTLI 431



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 465 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEA 524

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L+ EM   G+  +T TY+  I+GLCK   + E+ ++F ++       D+  ++ L+ G
Sbjct: 525 EELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSG 584

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VAD +TY  +IHG    G ++ A D+F +M  + V P+
Sbjct: 585 YCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPD 644

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT  +++       E  + + +L  ++
Sbjct: 645 TITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  AL+L+ +M     +P+VV   TL  GL    +V  A  L D M  DG
Sbjct: 153 LLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG 208

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIA 120
           +  +  TY   +DG+CK G  V ++ L R +  +   + ++  YS +IDGL K GR   A
Sbjct: 209 LQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDA 268

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  +    +  D+ TY+ MI G  + G+  +A  L  +M E  + PNV+T+  LI+ 
Sbjct: 269 HNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINA 328

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +++  +  +  EL  +M  + ++P+    + ++D   K 
Sbjct: 329 YVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQ 367



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 119/219 (54%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+S+M+     P V+  N L   +  + + +    L+ +M+R  
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++ I I   C    +  ++  F  +  L  + D+  +S L+ GLC   R+  AL
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH + R     +VVT++ +++GL  +G++ +A  L   M E+ + PN IT+GT++ G 
Sbjct: 168 DLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 223

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            +I +    + LL KM+E  ++ P+  I S ++D L K+
Sbjct: 224 CKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKD 262



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   +  A+ L   M+  G++P+ + + T+  G+ +I     A  L  +M+   
Sbjct: 184 LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMS 243

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  IDGL K+G   ++  L+  ++      D+  Y+C+IDG C SGR   A
Sbjct: 244 HIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEA 303

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  +VVTYS +I+    + +  +A +L+ +M    + PN IT+ ++I G
Sbjct: 304 QRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDG 363

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + N       + + M  K   PD    + ++D
Sbjct: 364 FCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLID 397


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+++ I+ A+N Y +ML+ G+KPD+V++NTL  GL ++  V +A KL DEM+  G
Sbjct: 334 LIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVG 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  ++E+ + +      LD  A++ LI G C+ GR+  A 
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  D  TY+++I G    G +     L  +M+ N   P VIT+  L++G 
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGL 513

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +      LL  M    V PD    +I+++   KN
Sbjct: 514 CKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKN 551



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 112/205 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +CK   I  A  +++E+  +G++P  V  NTL  GL +   ++  F+L   M+ +
Sbjct: 228 ILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEEN 287

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY++ I GLCK G +  + +LF  ++      +   ++ LIDG C+S R++ A
Sbjct: 288 RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSA 347

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  +H +    +  D+V Y+ +++GL   G ++KA  L  +M    + P+ IT+ TLI G
Sbjct: 348 MNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDG 407

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + +  +    +E+   M E+ V+ D
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLD 432



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK++ ++    L   M    I PDV  ++ L  GL +  +++ A +LFDEMQ+ G
Sbjct: 264 LINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG C++  I  ++  +  +  +  + D+  Y+ L++GLCK G +  A 
Sbjct: 324 LRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKAR 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D +TY+ +I G   +G ++ A ++   M E  V  + + F  LI GF
Sbjct: 384 KLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGF 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R          L +M E  + PD +  ++V+D   K
Sbjct: 444 CRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCK 480



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 107/201 (53%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            YSE+L  G  P V  +N L     +   +  A  +F+E+++ G+   T ++   I+GLC
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K+  + E   L +T+   +   D+  YS LI GLCK GRL++A +LF  + +  L  + +
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T++ +I G     ++D A + +  M    V P+++ + TL++G  ++ + +K  +L+ +M
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
           +   + PD    + ++D   K
Sbjct: 390 RMVGMKPDKITYTTLIDGYCK 410



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   ++ A  L+ EM  +G++P+ +    L  G     +++ A   + +M   
Sbjct: 298 VLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTM 357

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y   ++GLCK G + ++ +L   +R++  + D   Y+ LIDG CK G LE A
Sbjct: 358 GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESA 417

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +V D V ++ +I G   DG++  A     +M E  + P+  T+  +I G
Sbjct: 418 MEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDG 477

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +        +LL +M+     P     +++++ L K
Sbjct: 478 YCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCK 515



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GYCK   ++    L  EM   G KP V+ +N L  GL +  Q++ A  L + M   
Sbjct: 473 MVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNL 532

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           GV  D  TY I ++G CKNG
Sbjct: 533 GVTPDDITYNILLEGHCKNG 552



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 39/191 (20%)

Query: 63  AADTRTYTIFIDGL----CKNGYIVESVELFRTLRILKCEL------------------- 99
            A TR      D L      +G++ ++++ FR +R    ++                   
Sbjct: 146 TAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPV 205

Query: 100 ----------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
                            +Q Y+ LI+  CK G +  A  +F+ + +  L    V+++ +I
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +GL     +D+   L   MEEN + P+V T+  LIHG  +        +L  +M+++ + 
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 204 PDASIVSIVVD 214
           P+    + ++D
Sbjct: 326 PNGITFTALID 336


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 112/202 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C   ++ GA +L +EM+ K I P+V  +  L   L +  +V+ A  L  EM   G
Sbjct: 233 LIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRG 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TYT  +DG CKN  + ++  LF  ++    + +   Y+ LIDGLCK GRL+ A 
Sbjct: 293 QPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQ 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  L       DV TY++MI GL  +G +D+A  +   ME+N   PNV+TF  +I   
Sbjct: 353 KLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSL 412

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            + +E  K  +LLH+M  K ++
Sbjct: 413 FKKDENDKAEKLLHEMIAKGLL 434



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 93/162 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK  +++ A NL +EM  +G   DVV + +L  G  +   +++A  LF +M+  
Sbjct: 267 ILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEW 326

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYT  IDGLCK G + ++ +LF+ L +  C +D+  Y+ +I GLCK G L+ A
Sbjct: 327 GIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEA 386

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           L +   +     + +VVT+ I+I  L+   + DKA  L  +M
Sbjct: 387 LAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEM 428



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 111/215 (51%), Gaps = 1/215 (0%)

Query: 5   GY-CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
           GY  K K    A++L  +M  KGI+P++V  N L      + Q+  +F +  ++ + G  
Sbjct: 60  GYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQ 119

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
            +T T T  + GLC  G + +SV     +     +++  +Y  L++GLCK G    A++ 
Sbjct: 120 PNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKF 179

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
              +       +VV Y+ +I GL  D  +++A+D + +M    + PNVIT+ TLI GF  
Sbjct: 180 LRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCL 239

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +    LL++M  KN+ P+    +I++D L K
Sbjct: 240 AGQLTGAFSLLNEMILKNINPNVYTYAILIDALCK 274



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   E++ +++ + +++++G + + V + TL  GL +I +   A K    ++   
Sbjct: 128 LMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSS 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   IDGLCK+  + E+ + +  +       ++  Y+ LI G C +G+L  A 
Sbjct: 188 TGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAF 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I+I  L  +G++ +A +L  +M       +V+T+ +L+ GF
Sbjct: 248 SLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGF 307

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     K   L  KMKE  + P+    + ++D L K
Sbjct: 308 CKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCK 344



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  E   A+     +       +VV++NT+  GL +   V  A+  + EM   G
Sbjct: 163 LLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARG 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I G C  G +  +  L   + +     ++  Y+ LID LCK G+++ A 
Sbjct: 223 IFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAK 282

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +      ADVVTY+ ++ G   +  +DKA  LF+ M+E  + PN  T+  LI G 
Sbjct: 283 NLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGL 342

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        +L   +  K    D    ++++  L K
Sbjct: 343 CKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCK 379



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/146 (17%), Positives = 69/146 (47%)

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L K  +   ++ L + + +   E ++   + LI+  C  G++  +  +   + +     +
Sbjct: 62  LAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPN 121

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
            +T + ++ GL   G++ K+      +       N +++GTL++G  +I E    I+ L 
Sbjct: 122 TITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLR 181

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNEI 221
            +++ +   +  + + ++D L K+++
Sbjct: 182 MIEDSSTGLNVVMYNTIIDGLCKDKL 207


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 114/203 (56%), Gaps = 2/203 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C   ++ GA +L +EM+ K I P+V  +N L   L +  +V+ A KL  EM   G
Sbjct: 246 LIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKG 305

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TY   +DGLCK+  + ++  LF  ++    + +   Y+ LIDGLCK GRL+ A 
Sbjct: 306 QPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQ 365

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +LF H L +G  + DV TY++MI GL  +G  DKA  +   ME+N   PN +TF  +I  
Sbjct: 366 KLFQHLLVKGCCI-DVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRS 424

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               +E  K  +LLH M  K ++
Sbjct: 425 LFEKDENDKAEKLLHGMIAKGLL 447



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K    A++L  +M  KGI+P++V  N L      + Q+  +F +  ++ + G   DT 
Sbjct: 77  KMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTI 136

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T    + GLC  G +  S+     +     +++  +Y  L++GLCK G    A++L   +
Sbjct: 137 TLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMI 196

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DVV YS +I GL  D  +++A+D F +M    + PNVIT+ TLI GF    + 
Sbjct: 197 EDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQL 256

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                LL++M  KN+ P+    +I++D L K
Sbjct: 257 MGAFSLLNEMILKNINPNVYTYNILIDALCK 287



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  E   A+ L   +  +  +PDVV+++T+  GL +   V +A+  F EM   G
Sbjct: 176 LLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARG 235

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I G C  G ++ +  L   + +     ++  Y+ LID LCK G+++ A 
Sbjct: 236 IFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAK 295

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +      ADVVTY+ ++ GL     +DKA  LF+ M++  + PN  T+  LI G 
Sbjct: 296 KLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGL 355

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        +L   +  K    D    ++++  L K
Sbjct: 356 CKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCK 392



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 92/162 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK  +++ A  L +EM  KG   DVV +N++  GL +   +++A  LF +M++ 
Sbjct: 280 ILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKW 339

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYT  IDGLCK G +  + +LF+ L +  C +D++ Y+ +I GLCK G  + A
Sbjct: 340 GIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKA 399

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           L +   +     + + VT+ I+I  L+   + DKA  L   M
Sbjct: 400 LAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGM 441



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 108/220 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C   ++  + ++  ++L  G +PD +  NTL  GL    +V+R+    D++   
Sbjct: 105 ILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQ 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   ++GLCK G    +V+L R +       D+  YS +IDGLCK   +  A
Sbjct: 165 GFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQA 224

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +    +  +V+TYS +I G    GQ+  A  L  +M    + PNV T+  LI  
Sbjct: 225 YDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDA 284

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +  +  +LL +M  K    D    + V+D L K++
Sbjct: 285 LCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQ 324



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   E++ +L+ + +++++G + + V + TL  GL +I +   A KL   ++   
Sbjct: 141 LMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRS 200

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  IDGLCK+  + ++ + F  +       ++  YS LI G C +G+L  A 
Sbjct: 201 TRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAF 260

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I+I  L  +G++ +A  L  +M       +V+T+ +++ G 
Sbjct: 261 SLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGL 320

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     K   L  KMK+  + P+    + ++D L K
Sbjct: 321 CKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCK 357



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 80  GYIVE------SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
           GY+V+      ++ L R + +   E ++   + LI+  C  G++  +  +   + +    
Sbjct: 73  GYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQ 132

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            D +T + ++ GL   G++ ++      +       N +++GTL++G  +I E    ++L
Sbjct: 133 PDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKL 192

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           L  +++++  PD  + S ++D L K++I
Sbjct: 193 LRMIEDRSTRPDVVMYSTIIDGLCKDKI 220


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 121/212 (57%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+ +++ A  +  EM+++GI PD V++ TL  G  ++  ++ A+KLFDEM++  +  D 
Sbjct: 56  CKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDF 115

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YT  I GLC+ G ++E+ ++F  +     E D   Y+ LIDG CKSG +E A  L + 
Sbjct: 116 IAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQ 175

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  +VVTY+ +  GL   GQ+D A++L  +M    +  N+ T+ +L++G  +   
Sbjct: 176 MVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGN 235

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + ++L+ +M+   + PD    + ++D   K
Sbjct: 236 IRQAVKLMEEMEVAGMYPDTITFTTLMDAYCK 267



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 122/219 (55%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGYC   E++  L L  EM  KG+KP++  +N++ + L +  +V+ A ++  EM   G
Sbjct: 16  VINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT  YT  IDG CK G I  + +LF  +   +   D  AY+ +I GLC+ G++  A 
Sbjct: 76  IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEAD 135

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++F+ +  RGV   D VTY+ +I G    G+M+KA  L   M ++ + PNV+T+  L  G
Sbjct: 136 KVFNKMFSRGV-EPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADG 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             ++ +     ELLH+M  K +  +    + +V+ L K+
Sbjct: 195 LCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKS 233



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 115/206 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+  ++  A  ++++M S+G++PD V + TL  G  +  ++E+AF L ++M + G
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT   DGLCK G +  + EL   +     +L+I  Y+ L++GLCKSG +  A+
Sbjct: 181 LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAV 240

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D +T++ ++      G+M KAH+L  +M +  + P VITF  L++GF
Sbjct: 241 KLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGF 300

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                      LL  M EK +MP+ +
Sbjct: 301 CMSGMLEDGERLLAWMLEKGIMPNTT 326



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 116/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK+ E+E A +L+++M+  G+ P+VV +  L  GL ++ QV+ A +L  EM   G
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ++GLCK+G I ++V+L   + +     D   ++ L+D  CK+G +  A 
Sbjct: 216 LQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAH 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L   V+T++++++G    G ++    L   M E  + PN  T+ +L+  +
Sbjct: 276 ELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQY 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N      E+   M  + VMPD++  +I++
Sbjct: 336 CIRNNMRCTTEIYKGMCARGVMPDSNTYNILI 367



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 115/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   I+ A  L+ EM  + I PD + +  +  GL    ++  A K+F++M   G
Sbjct: 86  LIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRG 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TYT  IDG CK+G + ++  L   +       ++  Y+ L DGLCK G+++ A 
Sbjct: 146 VEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTAN 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  ++ TY+ +++GL   G + +A  L  +ME   + P+ ITF TL+  +
Sbjct: 206 ELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAY 265

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  E  K  ELL +M ++ + P     +++++
Sbjct: 266 CKTGEMVKAHELLREMLDRGLQPTVITFNVLMN 298



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 101/197 (51%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  +G  PDVV ++T+  G     ++++  KL  EMQ  G+  +  TY   I  LCK+G 
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + ++  + R +       D   Y+ LIDG CK G ++ A +LF  + +  +V D + Y+ 
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I GL   G+M +A  +F  M    V P+ +T+ TLI G+ +  E  K   L ++M +  
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 202 VMPDASIVSIVVDLLAK 218
           + P+    + + D L K
Sbjct: 181 LTPNVVTYTALADGLCK 197



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 85/163 (52%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G A D  +Y+  I+G C  G + + ++L + +++   + ++  Y+ +I  LCKSG+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A  +   +    +V D V Y+ +I G    G +  A+ LF +ME+  + P+ I +  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +I G  R  +  +  ++ +KM  + V PD    + ++D   K+
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKS 163



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +E    L + ML KGI P+   +N+L       + +    +++  M   
Sbjct: 295 VLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCAR 354

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+ TY I I G CK   + E+  L + +      L   +Y+ +I G  K  ++  A
Sbjct: 355 GVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEA 414

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
            ELF  + R  + AD   Y++ +   Y +G M+ A +L  +  EN 
Sbjct: 415 RELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIENC 460



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ YCK  E+  A  L  EML +G++P V+  N L  G      +E   +L   M   G
Sbjct: 261 LMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKG 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   +   C    +  + E+++                   G+C         
Sbjct: 321 IMPNTTTYNSLMKQYCIRNNMRCTTEIYK-------------------GMC--------- 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                  RGV+  D  TY+I+I G      M +A  L  +M E        ++ ++I GF
Sbjct: 353 ------ARGVM-PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGF 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
            +  + S+  EL  +M+ + +  DA I ++ VD+
Sbjct: 406 FKKKKISEARELFEEMRREGMAADAEIYNLFVDI 439


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 135/259 (52%), Gaps = 41/259 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK++  + A  L+ EM ++GI PDV+ + TL  G     + E+A  LF+EM   
Sbjct: 307 IIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 366

Query: 61  GVAADTRTYTIFIDGLCKNGYIVE-----------------------------------S 85
           G+  D  T ++ ID LCK G ++E                                   +
Sbjct: 367 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKA 426

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-----PRGV-LVADVVTY 139
            +LF  ++ L C  ++   + L+ GLC+SG ++IALEL  ++     P G+    + ++Y
Sbjct: 427 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 486

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           SI+I GL   G+ D+A +LF +M+   V P+VI++ +LIHGF R  +      L ++M +
Sbjct: 487 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 546

Query: 200 KNVMPDASIVSIVVDLLAK 218
             V PD +  S+++D+L K
Sbjct: 547 IGVQPDVTTFSVLIDMLCK 565



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 41/260 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK++  + A  L+ EM ++G+ PDV+ + +L  G     + E+A  LF+EM   
Sbjct: 126 IIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDV 185

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ +D  T ++ ID LCK G ++E+ EL   +    C LDI  YS LI GLC   R+  A
Sbjct: 186 GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEA 245

Query: 121 LELFHSLPR----------GVLV-------------------------------ADVVTY 139
             LF S+ +          G L+                                 +++Y
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISY 305

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           SI+I GL  D + D+A +LF +M+   + P+VI++ TLIHGF    +  K   L ++M +
Sbjct: 306 SIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 365

Query: 200 KNVMPDASIVSIVVDLLAKN 219
             + PD +  S+++D+L K 
Sbjct: 366 VGIQPDVTTSSVLIDMLCKK 385



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C++ + + A  L++EM+  G++PDV   + L   L +  +V  A +L + M + G
Sbjct: 524 LIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG 583

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +T TYT  + GLC N  I E+ +LF  ++ L C  D+  Y  L+ GLC++G ++ AL
Sbjct: 584 CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTAL 643

Query: 122 ELFHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           EL   +             DV++YSI+I GL   G+ D+A +LF +M+   V PNVI++ 
Sbjct: 644 ELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYT 703

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LIHGF R  +      L ++M ++ V  +A   S+++    K
Sbjct: 704 SLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 746



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 111/203 (54%), Gaps = 6/203 (2%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           ML  GI+PDV     L     +  +V  A +L + M + G   D  TY+  I GLC    
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-----PRGVLV-AD 135
           I E+ +LF +++ L C  D  AY  L+ GLC++G++ IAL L   +       G+     
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           +V+YSI+I GL  D + D+A +LF +M+   + P+VI++ +LIHGF R  +  K   L +
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +M +  +  D +  S+++D+L K
Sbjct: 181 EMLDVGIRSDVTTSSMLIDILCK 203



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK  ++  A  L   ++ +G  PDVV   TL  GL   H++ +A +LF +MQ+ 
Sbjct: 377 VLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI------LKCELDIQAYSCLIDGLCKS 114
           G   +  T    + GLC++G I  ++EL + +        + C+ +  +YS +IDGLCK 
Sbjct: 437 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC 496

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR + A ELF  +    ++ DV++Y+ +IHG    G+   A  LF +M +  V P+V TF
Sbjct: 497 GREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 556

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             LI    +  +  +  ELL  M ++  +P+    + +V  L  N+
Sbjct: 557 SVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMND 602



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GI--KPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+ G C++  I+ AL L+  MLS     GI  KP+ + ++ +  GL +  + + A +LF 
Sbjct: 448 LMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFK 507

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  GV  D  +YT  I G C++G   ++  LF  +  +  + D+  +S LID LCK G
Sbjct: 508 EMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEG 567

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A EL   + +   + + VTY+ ++ GL  + ++ +A  LF+ M++    P+V+T+G
Sbjct: 568 KVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYG 627

Query: 176 TLIHGFIRINEPSKVIELLHKMKE------KNVMPDASIVSIVVDLLAKN 219
           TL+ G  +       +EL  KM         N  PD    SI++D L K+
Sbjct: 628 TLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKH 677



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L+ G C N  I  A  L+ +M   G  PDVV + TL  GL +   ++ A +L  +M  D 
Sbjct: 594 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDT 653

Query: 61  -----GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                    D  +Y+I IDGLCK+G   E+ ELF+ ++ L    ++ +Y+ LI G C+SG
Sbjct: 654 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 713

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           +LE A  LF+ +    +  + VTYS+MIHG   +GQ+DKA  LF  ME N
Sbjct: 714 KLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEAN 761



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 109/204 (53%), Gaps = 8/204 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK  ++  A  L   M+ +G  P+ V + TL  GL    ++  A +LF +MQ+ 
Sbjct: 558 VLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKL 617

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL------DIQAYSCLIDGLCKS 114
           G   D  TY   + GLC+ G I  ++EL + +     +       D+ +YS +IDGLCK 
Sbjct: 618 GCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKH 677

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR + A ELF  +    ++ +V++Y+ +IHG    G+++ A  LF +M +  V  N +T+
Sbjct: 678 GREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTY 737

Query: 175 GTLIHGFIRINEPSKVIELLHKMK 198
             +IHGF +  +  K   L  KM+
Sbjct: 738 SVMIHGFCKEGQIDKA--LFQKME 759



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 12/229 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GIK--PDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+ G C+   I  AL L+ EML+     GIK  P ++ ++ +  GL +  + + A +LF 
Sbjct: 267 LMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFK 326

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+  D  +YT  I G C +G   ++  LF  +  +  + D+   S LID LCK G
Sbjct: 327 EMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKG 386

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A +L   + +   + DVVT + ++ GL    ++ KA  LFL M++    PNV+T  
Sbjct: 387 KVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 446

Query: 176 TLIHGFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAK 218
           TL+ G  +       +EL   M         N  P+A   SI++D L K
Sbjct: 447 TLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCK 495



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 7/229 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +CK  ++  A  L   M+ +G   D+V ++TL  GL   H++  A +LF  M++ 
Sbjct: 15  VLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------RILKCELDIQAYSCLIDGLCKS 114
           G   D   Y   + GLC+ G I  ++ L + +        +KC+  + +YS +IDGLCK 
Sbjct: 75  GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKD 134

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            R + A ELF  +    ++ DV++Y+ +IHG    G+ +KA  LF +M +  +  +V T 
Sbjct: 135 RREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTS 194

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
             LI    +  +  +  ELL  M ++  + D    S ++  L  K+ IS
Sbjct: 195 SMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 12/231 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GIK--PDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+ G C+  +I  AL+L+ EML+     GIK  P +V ++ +  GL +  + + A +LF 
Sbjct: 86  LMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFK 145

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+  D  +YT  I G C++G   ++  LF  +  +    D+   S LID LCK G
Sbjct: 146 EMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEG 205

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A EL   + +   + D+VTYS +I GL    ++ +A  LF+ M++    P+ I +G
Sbjct: 206 KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYG 265

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKN------VMPDASIVSIVVDLLAKNE 220
           TL+ G  +    +  ++L  +M            P     SI++D L K+ 
Sbjct: 266 TLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDR 316


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 113/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   +  AL +++EM  KG+ PDVV   +L   +     +ERA  L  +M+  G
Sbjct: 266 LVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG C+NG++ +++   + +R  + +  +  Y+ LI+G CK GR++ A 
Sbjct: 326 LRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEAR 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    +  DVVTYS ++ G    G  D A +L   M +  V P+ IT+ +LI G 
Sbjct: 386 ELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGL 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                     EL  KM +  + PD    + ++D
Sbjct: 446 CEERRLGDACELFEKMLQLGLQPDEFTYTTLID 478



 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 116/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK   +E A  ++ EM  +G+ PD V +NTL  G  +   +  A  +F EM + G
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKG 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T+T  I  +C+ G +  +V L   +R     ++   ++ LIDG C++G L+ AL
Sbjct: 291 VVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDAL 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +   VV Y+++I+G    G+MD+A +L  +ME   + P+V+T+ T++ G+
Sbjct: 351 LAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGY 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +I +     EL  KM +K V+PDA   S ++
Sbjct: 411 CKIGDTDSAFELNRKMLKKGVVPDAITYSSLI 442



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 1/209 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   ++ A  L  EM +KG+KPDVV ++T+  G  +I   + AF+L  +M + 
Sbjct: 370 VLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKK 429

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY+  I GLC+   + ++ ELF  +  L  + D   Y+ LIDG CK G ++ A
Sbjct: 430 GVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKA 489

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  ++ DVVTYS++I GL    +  +A  L   +      P+ I +  L+H 
Sbjct: 490 LSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMH- 548

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV 209
             R  E   V+ LL     K +M  A  V
Sbjct: 549 CCRTAEFKSVVALLKGFSMKGLMNQADKV 577



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+N  ++ AL    EM    I+P VV +N L  G  ++ +++ A +L  EM+  G
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  + G CK G    + EL R +       D   YS LI GLC+  RL  A 
Sbjct: 396 MKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDAC 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + +  L  D  TY+ +I G   +G + KA  L  +M +  V P+V+T+  LI G 
Sbjct: 456 ELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +   LL K+  ++ +PD
Sbjct: 516 SKSARTKEAQRLLFKLYYEDPVPD 539



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF-DEMQRDGVAADTR 67
           +  +  A  L + ML  G+ P+V  +N L   L    Q E A  +  D+M+  G A +  
Sbjct: 132 DASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVV 191

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   +   C+ G +  +  L   +R       +  ++ +++GLCK+GR+E A ++F  +
Sbjct: 192 TYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEM 251

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R  L  D V+Y+ ++ G    G + +A  +F +M +  V P+V+TF +LIH   R    
Sbjct: 252 AREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNL 311

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + + L+ +M+E+ +  +    + ++D   +N
Sbjct: 312 ERAVALVGQMRERGLRMNEFTFTALIDGFCRN 343



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSE-MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL+   C   + E AL +  + M   G  P+VV +NTL        +V+ A +L   M+ 
Sbjct: 159 ILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMRE 218

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV     T+   ++GLCK G + ++ ++F  +       D  +Y+ L+ G CK+G L  
Sbjct: 219 GGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHE 278

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL +F  + +  +V DVVT++ +IH +   G +++A  L   M E  +  N  TF  LI 
Sbjct: 279 ALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF R       +  + +M+E  + P     +++++   K
Sbjct: 339 GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCK 377



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 50/271 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYCK  + + A  L  +ML KG+ PD + +++L  GL E  ++  A +LF++M + G
Sbjct: 406 ILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           +  D  TYT  IDG CK G + +++ L   +       D+  YS LIDGL KS R + A 
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQ 525

Query: 121 ---LELFHSLP-------------------------------RGVL-VADVV-------- 137
               +L++  P                               +G++  AD V        
Sbjct: 526 RLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRH 585

Query: 138 ------TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                  YS++IHG    G + KA      +     +PN  +  +L+ G        +  
Sbjct: 586 WKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEAD 645

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            ++ ++     + DA     ++DL  K  + 
Sbjct: 646 NVIQELLNCCSLADAETSKALIDLNRKEGVG 676



 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+C+   I  AL+ + ++L  G  P+     +L  GLFE      A  +  E+   
Sbjct: 595 VLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLNC 654

Query: 61  GVAADTRTYTIFID 74
              AD  T    ID
Sbjct: 655 CSLADAETSKALID 668


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CKN ++  AL++  EM  KG KPD+   NTL  GL ++ + E A  L+ +M  D
Sbjct: 455 VLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLD 514

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+T TY   I    + G I E+++L   +    C LD   Y+ LI   CK G  E A
Sbjct: 515 GVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKA 574

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  + R  LV   ++ +++I+GL   G++  A +L  DM    +AP+V+T+ +LI+G
Sbjct: 575 LGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLING 634

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             ++    +   L +K++ + + PDA
Sbjct: 635 LCKMGNIREAFNLFNKLQAEGIQPDA 660



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 117/225 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +  A+++ ++M + G  P+++ + TL  G  + +Q+E A  + +EM   G
Sbjct: 386 LIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKG 445

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y + +  LCKNG + +++++   +    C+ DI  ++ LI GLCK  R E AL
Sbjct: 446 FELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDAL 505

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    ++A+ VTY+ +IH     G + +A  L  DM       + IT+  LI  F
Sbjct: 506 ALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAF 565

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            ++    K + L  +M  K+++P     +++++ L +     N+L
Sbjct: 566 CKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNAL 610



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 1/198 (0%)

Query: 1   ILINGYCKNKEI-EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILINGY K+  + E    LY +M+  G +PDV   NTL  GL +   +  A  + ++M  
Sbjct: 349 ILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSA 408

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G   +  TYT  +DG CK   + E+  +   +     EL+I  Y+ L+  LCK+G++  
Sbjct: 409 NGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPK 468

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL++   +       D+ T++ +I GL    + + A  L+ DM  + V  N +T+ TLIH
Sbjct: 469 ALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIH 528

Query: 180 GFIRINEPSKVIELLHKM 197
            F+R     + ++L++ M
Sbjct: 529 AFLRGGAIQEALKLVNDM 546



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 94/182 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + +   I+ AL L ++ML +G   D + +N L     ++   E+A  LFDEM R  
Sbjct: 526 LIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKD 585

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     +  + I+GLC+ G +  ++EL R +       D+  Y+ LI+GLCK G +  A 
Sbjct: 586 LVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAF 645

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ L    +  D +TY+ +I      G  D A+ L L   ENA  PN +T+  L+  F
Sbjct: 646 NLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNF 705

Query: 182 IR 183
           I+
Sbjct: 706 IK 707



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K   +  AL L  EM   G  PDV   N +  GL  ++++    KL D M   G
Sbjct: 249 LIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRG 308

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + ++GLC+ G + E+  L   L  +    D+  ++ LI+G  KSGRL+ A 
Sbjct: 309 FTPNDITYGVLMNGLCRVGKVDEAQVL---LNKVPTPNDVH-FTILINGYVKSGRLDEAN 364

Query: 122 E-LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + +     DV T++ +IHGL   G M  A D+  DM  N   PN+IT+ TL+ G
Sbjct: 365 AFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDG 424

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F + N+  +   +L++M  K    +    ++++  L KN
Sbjct: 425 FCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKN 463



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 40/240 (16%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A N++ EMLSKG+ P V     +   L  +++V+ A  L  +M + G   ++  Y   I 
Sbjct: 192 AANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIH 251

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQ-------------------------------- 102
            L K   + E+++L   + ++ C  D+                                 
Sbjct: 252 ALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTP 311

Query: 103 ---AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
               Y  L++GLC+ G+++ A  L + +P      + V ++I+I+G    G++D+A+   
Sbjct: 312 NDITYGVLMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEANAFL 367

Query: 160 LD-MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            D M +N   P+V TF TLIHG  +       +++++ M      P+    + ++D   K
Sbjct: 368 YDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCK 427



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING C+  ++  AL L  +M+ +G+ PDVV +N+L  GL ++  +  AF LF+++Q +
Sbjct: 595 LLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAE 654

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D  TY   I   C+ G
Sbjct: 655 GIQPDAITYNTLICWHCRAG 674



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%)

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           CE   ++Y+ ++D L  +    +A  +F+ +    ++  V T+ +++  L    ++D A 
Sbjct: 169 CEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNAC 228

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            L  DM ++   PN + + TLIH   + +  ++ ++LL +M     +PD    + V+
Sbjct: 229 SLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVI 285



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 40/83 (48%)

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           +Y++++  L +      A ++F +M    V P V TFG ++     +NE      LL  M
Sbjct: 175 SYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDM 234

Query: 198 KEKNVMPDASIVSIVVDLLAKNE 220
            +   +P++ +   ++  L+K +
Sbjct: 235 TKHGCVPNSVVYQTLIHALSKRD 257


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 135/259 (52%), Gaps = 41/259 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK++  + A  L+ EM ++GI PDV+ + TL  G     + E+A  LF+EM   
Sbjct: 463 IIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 522

Query: 61  GVAADTRTYTIFIDGLCKNGYIVE-----------------------------------S 85
           G+  D  T ++ ID LCK G ++E                                   +
Sbjct: 523 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKA 582

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-----PRGV-LVADVVTY 139
            +LF  ++ L C  ++   + L+ GLC+SG ++IALEL  ++     P G+    + ++Y
Sbjct: 583 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 642

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           SI+I GL   G+ D+A +LF +M+   V P+VI++ +LIHGF R  +      L ++M +
Sbjct: 643 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 702

Query: 200 KNVMPDASIVSIVVDLLAK 218
             V PD +  S+++D+L K
Sbjct: 703 IGVQPDVTTFSVLIDMLCK 721



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C++ + + A  L++EM+  G++PDV   + L   L +  +V  A +L + M + G
Sbjct: 680 LIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG 739

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +T TYT  + GLC N  I E+ +LF  ++ L C  D+  Y  L+ GLC++G ++ AL
Sbjct: 740 CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTAL 799

Query: 122 ELFHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           EL   +             DV++YSI+I GL   G+ D+A +LF +M+   V PNVI++ 
Sbjct: 800 ELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYT 859

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LIHGF R  +      L ++M ++ V  +A   S+++    K
Sbjct: 860 SLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 902



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 120/266 (45%), Gaps = 48/266 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C    I  A  L+  M   G +PD + + TL  GL +  ++  A  L  EM  D 
Sbjct: 276 LIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDT 335

Query: 62  -------VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
                  +  D  T ++ ID LCK G ++E+ EL   +    C LDI  YS LI GLC  
Sbjct: 336 SQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCME 395

Query: 115 GRLEIALELFHSLPR----------GVLV------------------------------- 133
            R+  A  LF S+ +          G L+                               
Sbjct: 396 HRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCK 455

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
             +++YSI+I GL  D + D+A +LF +M+   + P+VI++ TLIHGF    +  K   L
Sbjct: 456 PTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 515

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++M +  + PD +  S+++D+L K 
Sbjct: 516 FNEMLDVGIQPDVTTSSVLIDMLCKK 541



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GI--KPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+ G C++  I+ AL L+  MLS     GI  KP+ + ++ +  GL +  + + A +LF 
Sbjct: 604 LMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFK 663

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  GV  D  +YT  I G C++G   ++  LF  +  +  + D+  +S LID LCK G
Sbjct: 664 EMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEG 723

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A EL   + +   + + VTY+ ++ GL  + ++ +A  LF+ M++    P+V+T+G
Sbjct: 724 KVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYG 783

Query: 176 TLIHGFIRINEPSKVIELLHKMKE------KNVMPDASIVSIVVDLLAKN 219
           TL+ G  +       +EL  KM         N  PD    SI++D L K+
Sbjct: 784 TLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKH 833



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L+ G C N  I  A  L+ +M   G  PDVV + TL  GL +   ++ A +L  +M  D 
Sbjct: 750 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDT 809

Query: 61  -----GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                    D  +Y+I IDGLCK+G   E+ ELF+ ++ L    ++ +Y+ LI G C+SG
Sbjct: 810 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 869

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           +LE A  LF+ +    +  + VTYS+MIHG   +GQ+DKA  LF  ME N
Sbjct: 870 KLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEAN 917



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK  ++  A  L   ++ +G   DVV   TL  GL   H++ +A +LF +MQ+ 
Sbjct: 533 VLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 592

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI------LKCELDIQAYSCLIDGLCKS 114
           G   +  T    + GLC++G I  ++EL + +        + C+ +  +YS +IDGLCK 
Sbjct: 593 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC 652

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR + A ELF  +    ++ DV++Y+ +IHG    G+   A  LF +M +  V P+V TF
Sbjct: 653 GREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 712

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             LI    +  +  +  ELL  M ++  +P+    + +V  L  N+
Sbjct: 713 SVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMND 758



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 109/204 (53%), Gaps = 8/204 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK  ++  A  L   M+ +G  P+ V + TL  GL    ++  A +LF +MQ+ 
Sbjct: 714 VLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKL 773

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL------DIQAYSCLIDGLCKS 114
           G   D  TY   + GLC+ G I  ++EL + +     +       D+ +YS +IDGLCK 
Sbjct: 774 GCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKH 833

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR + A ELF  +    ++ +V++Y+ +IHG    G+++ A  LF +M +  V  N +T+
Sbjct: 834 GREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTY 893

Query: 175 GTLIHGFIRINEPSKVIELLHKMK 198
             +IHGF +  +  K   L  KM+
Sbjct: 894 SVMIHGFCKEGQIDKA--LFQKME 915



 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 7/212 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C + + E A  L++EML  GI+PDV     L     +  +V  A +L + M   G
Sbjct: 206 LIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRG 265

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  I GLC    I E+ +LF +++ L C  D  AY  L+ GLC++G++ IAL
Sbjct: 266 CILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIAL 325

Query: 122 ELFHSL-----PRGV--LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            L   +       G+  +  DV T S++I  L  +G++ +A++L   M +     +++T+
Sbjct: 326 HLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTY 385

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            TLI G    +  S+   L   M++    PDA
Sbjct: 386 STLIKGLCMEHRISEATWLFMSMQKLGCRPDA 417



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK  ++  A  L   M+ +G   D+V ++TL  GL   H++  A  LF  MQ+ 
Sbjct: 352 MLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 411

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFR-----TLRI-LKCELDIQAYSCLIDGLCKS 114
           G   D  TY   + GLC+ G I  +++L +     T R  +KC+  + +YS +IDGLCK 
Sbjct: 412 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 471

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            R + A ELF  +    ++ DV++Y+ +IHG    G+ +KA  LF +M +  + P+V T 
Sbjct: 472 RREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTS 531

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEIS 222
             LI    +  +  +  +LL  + ++  + D  +  ++V  L  K+ IS
Sbjct: 532 SVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRIS 580



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK++  + A  L+ EM ++G+ PDV+ + +L  G     + E+A  LF+EM   
Sbjct: 170 IIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDV 229

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T  + ID  CK G ++E+ EL   +    C LDI  YS LI GLC   R+  A
Sbjct: 230 GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEA 289

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-------AVAPNVIT 173
            +LF S+ +     D + Y  ++ GL   G+++ A  L  +M  +        + P+V T
Sbjct: 290 TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTT 349

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
              LI    +  +  +  ELL  M ++  + D    S ++  L 
Sbjct: 350 SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLC 393



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GIK--PDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+ G C+   I  AL L+ EML+     GIK  P ++ ++ +  GL +  + + A +LF 
Sbjct: 130 LMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFK 189

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+  D  +YT  I G C +G   ++  LF  +  +  + D+     LID  CK G
Sbjct: 190 EMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEG 249

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A EL   +     + D+VTYS +I GL    ++ +A  LF+ M++    P+ I +G
Sbjct: 250 KVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYG 309

Query: 176 TLIHGFIRINEPSKVIELLHKMKE-------KNVMPDASIVSIVVDLLAK 218
           TL+ G  +  + +  + L  +M         K + PD +  S+++D+L K
Sbjct: 310 TLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCK 359



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 12/229 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GIK--PDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+ G C+   I  AL L+ EML+     GIK  P ++ ++ +  GL +  + + A +LF+
Sbjct: 423 LMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFE 482

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+  D  +YT  I G C +G   ++  LF  +  +  + D+   S LID LCK G
Sbjct: 483 EMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKG 542

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++  A +L   + +   + DVVT + ++ GL    ++ KA  LFL M++    PNV+T  
Sbjct: 543 KVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 602

Query: 176 TLIHGFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAK 218
           TL+ G  +       +EL   M         N  P+A   SI++D L K
Sbjct: 603 TLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCK 651



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 109/260 (41%), Gaps = 52/260 (20%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI---------FIDGL 76
           G+ PD    N L   L  + +V         + R G   D  TY+I          ID L
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR------- 129
           CK G ++E+ EL   +    C LDI  YS LI GLC   R+  A  LF S+ +       
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 130 ---GVLV-------------------------------ADVVTYSIMIHGLYNDGQMDKA 155
              G L+                                 +++YSI+I GL  D + D+A
Sbjct: 125 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 184

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
            +LF +M+   + P+VI++ +LIHGF    +  K   L ++M +  + PD +   +++D+
Sbjct: 185 RELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDM 244

Query: 216 LAKNE--ISLNSLPSFTVHE 233
             K    I  N L    VH 
Sbjct: 245 FCKEGKVIEANELLEVMVHR 264


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 125/217 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G CK+K +  A +LYSEM+SKGI P+VV ++ L  G F + +++ A  LF+++  + 
Sbjct: 201 VIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILEN 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +DG CK+  + E   +F  +       D+  Y+ L+DG C    +  A 
Sbjct: 261 IKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAK 320

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++ +G +  D+ +Y+I+I+G     ++DKA +LF +M    + PNV+T+ +LI G 
Sbjct: 321 SIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGL 380

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  ++L+ +M ++ V P+    + ++D L K
Sbjct: 381 SKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFK 417



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 21/241 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK+++++    +++ M+ +GI PDVV +N+L  G   + +V  A  +F+ M + 
Sbjct: 270 ILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQG 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D R+Y I I+G CK   + +++ LF  +       ++  Y+ LIDGL KSGR+  A
Sbjct: 330 GVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 389

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN---------- 170
           L+L   +    +  +++TY+ +I  L+   Q+DKA  L    ++  + P+          
Sbjct: 390 LQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDG 449

Query: 171 ----------VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKN 219
                     V T+  +IHGF +     + + LL KMK+ + +P+A    I +  LL  N
Sbjct: 450 LCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNN 509

Query: 220 E 220
           E
Sbjct: 510 E 510



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 121/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E   AL+L   +  K ++ + V++NT+  G+ +   V  AF L+ EM   G
Sbjct: 166 LIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+  I G    G + ++++LF  + +   + D   ++ L+DG CK  +++   
Sbjct: 226 ISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGK 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  ++ DVVTY+ ++ G     +++ A  +F  M +  V P++ ++  LI+GF
Sbjct: 286 TVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGF 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I +  K + L ++M  KN++P+    + ++D L+K+
Sbjct: 346 CKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKS 383



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 15/203 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK K+++ A+NL++EM  K I P+VV +N+L  GL +  ++  A +L D+M   
Sbjct: 340 ILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDR 399

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   ID L K   + +++ L    +    +  +  Y+ LIDGLCK    +I 
Sbjct: 400 GVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDIT 459

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                          V TY++MIHG    G  D+A  L   M++++  PN +T+   I  
Sbjct: 460 ---------------VNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRS 504

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
            +  NE  K  +L  +M  + ++
Sbjct: 505 LLDNNENDKAEKLFREMITRGLL 527



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 4/216 (1%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           N +++ A++L++ +L +   P     N +   L +         L  +M+  G+  +   
Sbjct: 64  NNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFN 123

Query: 69  YTIFIDGLCKNGYI---VESVELFR-TLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
             I I   C+ G I   +    LF   L  L   LD  +Y  LI GLCK G    AL+L 
Sbjct: 124 CNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLL 183

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +   ++  + V Y+ +I+G+  D  ++ A DL+ +M    ++PNV+T+  LI GF  +
Sbjct: 184 QRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVV 243

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +    I+L +K+  +N+ PD    +I+VD   K+ 
Sbjct: 244 GKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDR 279



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 1   ILINGYCK----NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           ILI  +C+      +I  A   + ++++ G   D V + TL  GL ++ +   A  L   
Sbjct: 126 ILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQR 185

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           +    V  +   Y   I G+CK+ ++ ++ +L+  +       ++  YS LI G    G+
Sbjct: 186 VDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGK 245

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L+ A++LF+ +    +  D  T++I++ G   D +M +   +F  M +  + P+V+T+ +
Sbjct: 246 LKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNS 305

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L+ G+  + E +    + + M +  V PD    +I+++   K
Sbjct: 306 LMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCK 347



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLF-----IGLFEIHQVERAFKLFDEMQRDGV 62
           K+K     L+L  +M  +GIKP++   N L      +GL    Q+ +AF   D++   G 
Sbjct: 98  KSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPC-QIHQAFLFHDKLVALGF 156

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  +Y   I GLCK G    +++L + +     +L+   Y+ +I G+CK   +  A +
Sbjct: 157 HLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFD 216

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L+  +    +  +VVTYS +I G +  G++  A DLF  +    + P+  TF  L+ GF 
Sbjct: 217 LYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFC 276

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +  +  +   +   M ++ ++PD    + ++D
Sbjct: 277 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMD 308



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+CK    + AL+L S+M      P+ V +      L + ++ ++A KLF EM   
Sbjct: 465 VMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITR 524

Query: 61  GVAADTRTY 69
           G+   + +Y
Sbjct: 525 GLLNRSASY 533


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 115/207 (55%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ--R 59
           LI G+C  ++++ AL LY E+L+   + D V  + L  GL    ++  A++LF EM+   
Sbjct: 122 LITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRE 181

Query: 60  DGV-AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           DG    D  TYT  IDG CK+G + +++++   +   KC  ++  YS L+ GLCK+G L+
Sbjct: 182 DGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLD 241

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            AL+LF  +     V +VVTY+ +IHGL    ++D A  L  +M       + +++  L+
Sbjct: 242 QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALL 301

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
            G+ R+    +  +L  +M  K+ +PD
Sbjct: 302 DGYCRLGRIEEAKQLFKEMAAKSCLPD 328



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ AL+L+  M SKG  P+VV + TL  GL   H+V+ A  L DEM    
Sbjct: 230 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 289

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             ADT +Y   +DG C+ G I E+ +LF+ +    C  D   Y+CL+ G C + RLE A 
Sbjct: 290 CPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEAR 349

Query: 122 ELFHSLPRGVLV-ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L  ++     +  DVVTYSI++ G     +  +A +   +M    VAPN +T+ +LI G
Sbjct: 350 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDG 409

Query: 181 FIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAKNEISLNSL 226
             +    +  +E+L     KNV  PD    +IV++ L   + +  +L
Sbjct: 410 LCKAGRVNHAMEVL-----KNVDKPDVVTYTIVIEGLCGTDRTEEAL 451



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 40/245 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-Q 58
           +++NG CK +    A  +  EM   K + PD+V ++T+  G  +  +++RA ++  EM  
Sbjct: 14  VVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVT 73

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI------------------------ 94
           RDG+A D  TYT  +DGLC++G +  + E+ R +++                        
Sbjct: 74  RDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVD 133

Query: 95  --LK---------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPR---GVLVADVVTYS 140
             LK         C LD  + S LI GLC+  R+  A ELF  +     G    DVVTY+
Sbjct: 134 EALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYT 193

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I G    G ++KA  +   ME     PNV+T+ +L+HG  +  +  + ++L  +M  K
Sbjct: 194 ALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 253

Query: 201 NVMPD 205
             +P+
Sbjct: 254 GCVPN 258



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 121/256 (47%), Gaps = 39/256 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK---GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI G C+ + I  A  L+ EM  +     KPDVV +  L  G  +   +E+A K+   M+
Sbjct: 157 LITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVME 216

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-------------------------- 92
                 +  TY+  + GLCK G + ++++LFR +                          
Sbjct: 217 GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVD 276

Query: 93  --RILK-------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
             R+L        C  D  +Y+ L+DG C+ GR+E A +LF  +     + D +TY+ ++
Sbjct: 277 AARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLV 336

Query: 144 HGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
            G  N  ++++A  L  +M+  A + P+V+T+  ++ G+ R     +  E + +M  +NV
Sbjct: 337 RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNV 396

Query: 203 MPDASIVSIVVDLLAK 218
            P+A   S ++D L K
Sbjct: 397 APNAVTYSSLIDGLCK 412



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 48/264 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L++GYC+   IE A  L+ EM +K   PD + +  L  G     ++E A  L + M+   
Sbjct: 300 LLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+I + G  +    VE+ E  + +       +   YS LIDGLCK+GR+  A
Sbjct: 360 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHA 419

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGL---------------------------YND---- 149
           +E+  ++ +     DVVTY+I+I GL                           +N     
Sbjct: 420 MEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGA 475

Query: 150 ----GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK----- 200
               G MD+A  L + M  + + P ++T+ TL+ GF R        EL   M+ K     
Sbjct: 476 LCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSS 535

Query: 201 ---NVMPDASIVSIVVDLLAKNEI 221
              N++P+ +  +++  L    EI
Sbjct: 536 SAANLVPEQAFSALIRGLCKAREI 559



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRL 117
           R+ VA + RTY + ++GLCK     ++ E+ + +R  K    D+  YS +I+G CK G +
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEM 61

Query: 118 EIALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A E+   +  R  +  DVVTY+ ++ GL  DG+MD+A ++  +M+   V P+  TF  
Sbjct: 62  DRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA 121

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           LI G+    +  + ++L  ++   +   DA   S ++  L +
Sbjct: 122 LITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCR 163



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ GY + K    A     EM+++ + P+ V +++L  GL +  +V  A ++   + + 
Sbjct: 370 IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK- 428

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYTI I+GLC      E++ L   +   + E  +  ++ +I  LC+ G ++ A
Sbjct: 429 ---PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEA 485

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA----VAPNVI---T 173
            +L  ++    L   +VTY+ ++ G    G+M+ A++LF  M   A     A N++    
Sbjct: 486 WKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQA 545

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           F  LI G  +  E  K + ++ +++ +   P       +VD L
Sbjct: 546 FSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGL 588



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK     G +N   E+L    KPDVV +  +  GL    + E A  L +EM    
Sbjct: 406 LIDGLCK----AGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKR 461

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     T+   I  LC+ G + E+ +L   +     E  +  Y+ L++G  ++GR+EIA 
Sbjct: 462 VEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAY 521

Query: 122 ELFHSLPRGV----LVADVV---TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           ELF  + R        A++V    +S +I GL    ++DKA  +  ++      P     
Sbjct: 522 ELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDC 581

Query: 175 GTLIHGFIRINEPSKVIELLHKMKE 199
             ++ G +R     +  +L++ + +
Sbjct: 582 LAIVDGLLRAGRTEEAGKLINSISK 606



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C     E AL L  EM++K ++P V   N++   L  +  ++ A+KL   M   
Sbjct: 436 IVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAH 495

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE-------LDIQAYSCLIDGLCK 113
           G+     TYT  ++G  + G +  + ELF  +R    +       +  QA+S LI GLCK
Sbjct: 496 GLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCK 555

Query: 114 SGRLEIALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           +  ++ A+ +   L  R    A+    +I + GL   G+ ++A  L
Sbjct: 556 AREIDKAMAVVEELRSRECEPAEEDCLAI-VDGLLRAGRTEEAGKL 600


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 121/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML KGIKP  +++N +  GLFE  +   A   F EM   G
Sbjct: 577 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TY+I + GL KN    E++ LF+ LR +  ++DI   + +I G+ ++ R+E A 
Sbjct: 637 IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAK 696

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV   VTYSIMI  L  +G +++A D+F  M+     P+      ++   
Sbjct: 697 DLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVREL 756

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 757 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFS 792



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 114/216 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KP VV + T+   L  I +++ A + F++M   
Sbjct: 401 VLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ 460

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y   I G C +G ++++ EL   +      LDI  +  +I+ LCK GR+  A
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDA 520

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L  D V Y++++ G    G+M+KA  +F  M    + PNV+ +GTL++G
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +I    + + L  +M +K + P   + +I++D L
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A     +M++KG+ PD   +N L  G     Q + A ++F EM+R  
Sbjct: 262 VVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS 321

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D       +  LCK G I E+ ++F T+ +     D+ +Y+ +++G    G L    
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT 381

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  D+ T++++I    N G +DKA  +F +M ++ V P+V+T+ T+I   
Sbjct: 382 DLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAAL 441

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            RI +    +E  ++M ++ V+PD
Sbjct: 442 CRIGKMDDAMEKFNQMIDQGVVPD 465



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L+ EM+ +GI PD+V ++++   L +   +++A     +M   G
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I G    G   E+V +F+ +R      D+ A + L+  LCK G+++ A 
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEAR 346

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DV +Y+IM++G    G +    DLF  M  + +AP++ TF  LI  +
Sbjct: 347 DVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 406

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K + + ++M++  V P       V+  L +
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++   +    E AL  + ++L  G++ D +I + L  G  E  + + A   L      
Sbjct: 118 ILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPE 177

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y I +  LC  G   ++ +L R +      C  D+ AY+ +IDG  K G +
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDV 237

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LF  + +  +  D+VTYS ++H L     MDKA      M    V P+  T+  L
Sbjct: 238 NKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNL 297

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+G+    +  + + +  +M+ ++++PD   ++ ++  L K
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C +  +  A  L SE+++ G++ D+V   ++   L ++ +V  A  +FD     G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + +DG C  G + +++ +F  +     E ++  Y  L++G CK GR++  L
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +    + Y+I+I GL+  G+   A   F +M E+ +A N  T+  ++ G 
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     + I L  +++  NV  D
Sbjct: 652 FKNRCFDEAIFLFKELRAMNVKID 675



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 106/225 (47%), Gaps = 3/225 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK  +I+ A +++  M  KG  PDV  +  +  G      +     LFD M  DG
Sbjct: 332 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG 391

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  T+ + I      G + +++ +F  +R    +  +  Y  +I  LC+ G+++ A+
Sbjct: 392 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM 451

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F+ +    +V D   Y  +I G    G + KA +L  ++  N +  +++ FG++I+  
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNL 511

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD---LLAKNEISL 223
            ++        +        + PDA + ++++D   L+ K E +L
Sbjct: 512 CKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+ K  + AL+ L       G  PDV  +N L   L    +  +A  L   M   
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG 213

Query: 61  GV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   + D   Y   IDG  K G + ++ +LF+ +       D+  YS ++  LCK+  ++
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMD 273

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++ D  TY+ +I+G  + GQ  +A  +F +M   ++ P+V+   TL+
Sbjct: 274 KAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLM 333

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  +  ++   M  K   PD    +I+++
Sbjct: 334 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 56/224 (25%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELF-------RTL 92
           E A  L DE+QR G     R    F+  L        C +G  + +V LF       +  
Sbjct: 48  EEAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPAL-AVALFNRAASRAQGP 106

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF---------------------------- 124
           R+L        Y+ L+D   ++ R E+AL  F                            
Sbjct: 107 RVL--SPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRT 164

Query: 125 --------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV--APNVITF 174
                   H  P    V DV +Y+I++  L N G+  +A DL   M E     +P+V+ +
Sbjct: 165 DEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAY 224

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+I GF +  + +K  +L  +M ++ + PD    S VV  L K
Sbjct: 225 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCK 268


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 125/220 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I INGYCK ++I+ A+ L+ EM  +G+ P+ V +NTL   L +  +   A  LF +M   
Sbjct: 185 IFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCAC 244

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D   Y+  +DG CK G + E + LF+ ++    + D+  Y+ +I+G+C+S +++ A
Sbjct: 245 GLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDA 304

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   L    L  DV TY+ ++ GL  +G + +A  LF  MEE+   P   ++  L+ G
Sbjct: 305 KEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQG 364

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++ N+ S V++L+H+M ++    DA   + + D L  N+
Sbjct: 365 CLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFLPGND 404



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    ++   +++ + L +G KPDVVI  TL  G+  I + E A  L  EM   
Sbjct: 80  ILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLV 139

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T    + G C  G I +  ++F  +     + D+ +YS  I+G CK  +++ A
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +ELF  +    +V + VTY+ +I  L    +   A  LF  M    ++P+++ + TL+ G
Sbjct: 200 MELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDG 259

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F +     +++ L  +M+ + V PD  + +I+++ + ++ 
Sbjct: 260 FCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSR 299



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 114/232 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+  + E A  L  EM   G  PDVV  N+L  G     ++++  K+F  M   G
Sbjct: 116 LIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKG 175

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y+IFI+G CK   I E++ELF  +       +   Y+ LI  LC++ R   A 
Sbjct: 176 LKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQ 235

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  D++ YS ++ G    G +D+   LF +M+   V P+++ +  +I+G 
Sbjct: 236 VLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGM 295

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
            R  +     E+L ++  + + PD    + +VD L +    + +L  F   E
Sbjct: 296 CRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKME 347



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   + K+ E  ++L+ EM  +GIK +V   + L      +H V+  F +F +  + G
Sbjct: 46  LLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRG 105

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   +T  IDG+C+ G    +  L + + ++ C  D+   + L+ G C  G+++   
Sbjct: 106 FKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVR 165

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +    L  DV +YSI I+G     ++D+A +LF +M    V PN +T+ TLI   
Sbjct: 166 KIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKAL 225

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   P     L  KM    + PD    S ++D   K 
Sbjct: 226 CQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQ 263



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 39/218 (17%)

Query: 4   NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
            GY  N  ++ AL  ++ ML +  +P ++  N L   +  + + E    LF EM+     
Sbjct: 15  KGYFGN--LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEME----- 67

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
                                    FR ++   C L I     LI+  C    ++    +
Sbjct: 68  -------------------------FRGIKYNVCTLSI-----LINCFCFLHHVDYGFSV 97

Query: 124 F-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           F  +L RG    DVV ++ +I G+   G+ + A  L  +M      P+V+T  +L+ G+ 
Sbjct: 98  FGKTLKRG-FKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYC 156

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +  KV ++ H M  K + PD    SI ++   K E
Sbjct: 157 SQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVE 194


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 121/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML KGIKP  +++N +  GLFE  +   A   F EM   G
Sbjct: 577 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TY+I + GL KN    E++ LF+ LR +  ++DI   + +I G+ ++ R+E A 
Sbjct: 637 IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAK 696

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV   VTYSIMI  L  +G +++A D+F  M+     P+      ++   
Sbjct: 697 DLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVREL 756

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 757 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFS 792



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 114/216 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KP VV + T+   L  I +++ A + F++M   
Sbjct: 401 VLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ 460

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y   I G C +G ++++ EL   +      LDI  +  +I+ LCK GR+  A
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDA 520

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L  D V Y++++ G    G+M+KA  +F  M    + PNV+ +GTL++G
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +I    + + L  +M +K + P   + +I++D L
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A     +M++KG+ PD   +N L  G     Q + A ++F EM+R  
Sbjct: 262 VVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS 321

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D       +  LCK G I E+ ++F T+ +     D+ +Y+ +++G    G L    
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT 381

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +   + T++++I    N G +DKA  +F +M ++ V P+V+T+ T+I   
Sbjct: 382 DLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAAL 441

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            RI +    +E  ++M ++ V+PD
Sbjct: 442 CRIGKMDDAMEKFNQMIDQGVVPD 465



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L+ EM+ +GI PD+V ++++   L +   +++A     +M   G
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I G    G   E+V +F+ +R      D+ A + L+  LCK G+++ A 
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEAR 346

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       DV +Y+IM++G    G +    DLF  M  + +AP + TF  LI  +
Sbjct: 347 DVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 406

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K + + ++M++  V P       V+  L +
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++   +    E AL  + ++L  G++ D +I + L  G  E  + + A   L      
Sbjct: 118 ILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPE 177

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y I +  LC  G   ++ +L R +      C  D+ AY+ +IDG  K G +
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDV 237

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LF  + +  +  D+VTYS ++H L     MDKA      M    V P+  T+  L
Sbjct: 238 NKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNL 297

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+G+    +  + + +  +M+ ++++PD   ++ ++  L K
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C +  +  A  L SE+++ G++ D+V   ++   L ++ +V  A  +FD     G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + +DG C  G + +++ +F  +     E ++  Y  L++G CK GR++  L
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +    + Y+I+I GL+  G+   A   F +M E+ +A N  T+  ++ G 
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     + I L  +++  NV  D
Sbjct: 652 FKNRCFDEAIFLFKELRAMNVKID 675



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+ K  + AL+ L       G  PDV  +N L   L    +  +A  L   M   
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG 213

Query: 61  GV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   + D   Y   IDG  K G + ++ +LF+ +       D+  YS ++  LCK+  ++
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMD 273

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++ D  TY+ +I+G  + GQ  +A  +F +M   ++ P+V+   TL+
Sbjct: 274 KAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLM 333

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  +  ++   M  K   PD    +I+++
Sbjct: 334 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 105/225 (46%), Gaps = 3/225 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK  +I+ A +++  M  KG  PDV  +  +  G      +     LFD M  DG
Sbjct: 332 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG 391

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    T+ + I      G + +++ +F  +R    +  +  Y  +I  LC+ G+++ A+
Sbjct: 392 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM 451

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F+ +    +V D   Y  +I G    G + KA +L  ++  N +  +++ FG++I+  
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNL 511

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD---LLAKNEISL 223
            ++        +        + PDA + ++++D   L+ K E +L
Sbjct: 512 CKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 56/224 (25%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELF-------RTL 92
           E A  L DE+QR G     R    F+  L        C +G  + +V LF       +  
Sbjct: 48  EEAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPAL-AVALFNRAASRAQGP 106

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF---------------------------- 124
           R+L        Y+ L+D   ++ R E+AL  F                            
Sbjct: 107 RVL--SPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRT 164

Query: 125 --------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV--APNVITF 174
                   H  P    V DV +Y+I++  L N G+  +A DL   M E     +P+V+ +
Sbjct: 165 DEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAY 224

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+I GF +  + +K  +L  +M ++ + PD    S VV  L K
Sbjct: 225 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCK 268


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 107/203 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN   +  + E AL + +EM +KG KP++  +NTL   L +  Q + A +L  EM+ +G
Sbjct: 50  LINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNG 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D RTY   I  L K G + E+  LF  +R   C  D   Y+ LI GL K GR + A+
Sbjct: 110 CVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAM 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     DV+TYS +I GL  DG+  KA  LF +M+     P+ ITF  L+   
Sbjct: 170 ELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDAL 229

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +       +ELL +MKE+ V P
Sbjct: 230 GKAGRVDDALELLDEMKERGVKP 252



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 123/217 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K   +  A  L++EM  +G  PD   +N+L  GL ++ + ++A +L +EM+R G
Sbjct: 120 LISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  I GL K+G  V++ +LF+ ++    + D   ++ L+D L K+GR++ AL
Sbjct: 180 CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDAL 239

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +   VVTY+ +I G    G + +A++L  +M+ N   P+V+T+  LI G 
Sbjct: 240 ELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGL 299

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+ ++  +  ++L KM+++   PD    + +++ L K
Sbjct: 300 IKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGK 336



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K  + E A  L+ E+ +    PDVV ++ L   L    + E A ++  EMQ  G
Sbjct: 15  LLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKG 74

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +D L K G   E++ L   +R   C  D++ Y+CLI  L K+GRL  A 
Sbjct: 75  CKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAF 134

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +     V D  TY+ +I+GL   G+  KA +L  +ME +   P+V+T+ +LI G 
Sbjct: 135 TLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGL 194

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E  K  +L  +MK +   PD+   + ++D L K
Sbjct: 195 GKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGK 231



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K  ++  A NL  EM   G KPDVV ++ L  GL +  Q++ A ++  +M+++G
Sbjct: 260 LIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY   I+GL K G + ++  LF  ++   C  D+  YS LI  L K+ R+E A 
Sbjct: 320 CPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESAC 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D+ TY  +I  L   GQ+D A  LF +M    ++P+VIT+   ++  
Sbjct: 380 VLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSL 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            R     +  ++   MKE  ++PD +    ++  L+K +
Sbjct: 440 GRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTK 478



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K    + A+ L  EM   G  PDV+ +++L  GL +  +  +AFKLF EM+R G
Sbjct: 155 LIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ T+T  +D L K G + +++EL   ++    +  +  Y+ LI G  K G L  A 
Sbjct: 215 RKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R     DVVTYS +I GL    Q+D+A  +   ME+    P+ IT+ TLI+G 
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +    L  +MK K   PD    S ++  L K
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGK 371



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K+ E   A  L+ EM  +G KPD +    L   L +  +V+ A +L DEM+  G
Sbjct: 190 LITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERG 249

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY   I G  K G +VE+  L   ++   C+ D+  YSCLI GL K+ +L+ A 
Sbjct: 250 VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEAC 309

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +     D +TY+ +I+GL   G ++ A  LF  M+     P+V+T+ TLI   
Sbjct: 310 QVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +         L  +M+   + PD      ++ +L K
Sbjct: 370 GKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGK 406



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K   ++ AL L  EM  +G+KP VV +N L  G  ++  +  A+ L DEM+R+G
Sbjct: 225 LMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNG 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  I GL K   + E+ ++ + +    C  D   Y+ LI+GL K+G L  A 
Sbjct: 285 CKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAG 344

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       DVVTYS +I  L    +++ A  LF +ME   + P++ T+ ++I   
Sbjct: 345 RLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVL 404

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +      L  +M+ K + PD
Sbjct: 405 GKAGQVDDADRLFSEMRGKGLSPD 428



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+VV +N+L   L +  Q E A  LF+E++      D  +Y+  I+ L + G    ++E+
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              ++   C+ ++  Y+ L+D L K+G+ + AL L   +     V DV TY+ +I  L  
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++ +A  LF +M E    P+  T+ +LI+G  ++    K +ELL +M+     PD   
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186

Query: 209 VSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            S ++  L K+  ++ +   F   +R+    +S
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDS 219



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING  K   +  A  L+  M SKG  PDVV ++TL   L +  +VE A  LF+EM+  G
Sbjct: 330 LINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I  L K G + ++  LF  +R      D+  Y+  ++ L + GR + A 
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEAR 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    L+ DV TY  ++ GL    ++D A  L  ++ E   A + + F   +   
Sbjct: 450 KIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEIL 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  +  ELL     K + P AS  + ++D LAK
Sbjct: 510 TSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAK 546



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 102/205 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K  +++ A  +  +M  +G  PD + +NTL  GL +   +  A +LFD M+  G
Sbjct: 295 LITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG 354

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  I  L K   +  +  LF  +  +  + D+  Y  +I  L K+G+++ A 
Sbjct: 355 CNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDAD 414

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  DV+TY+  ++ L   G+  +A  +F DM+E+ + P+V T+  L+ G 
Sbjct: 415 RLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGL 474

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +  E      LL ++ E+    D+
Sbjct: 475 SKTKEVDDACGLLKELIEQGCAFDS 499



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI    K   +E A  L+ EM S GI+PD+  + ++   L +  QV+ A +LF EM+  G
Sbjct: 365 LITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKG 424

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY  F++ L + G   E+ ++F  ++      D+  Y  L+ GL K+  ++ A 
Sbjct: 425 LSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDAC 484

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L       D + +   +  L + G +D+AH+L        + P   ++  LI   
Sbjct: 485 GLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDAL 544

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S+    L  +KE+   PD    S ++  L + 
Sbjct: 545 AKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQT 582



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 93/195 (47%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  +++ A  L+SEM  KG+ PDV+ +N     L    + + A K+F++M+  G+  D  
Sbjct: 406 KAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVA 465

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   + GL K   + ++  L + L    C  D   +   ++ L   G ++ A EL    
Sbjct: 466 TYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFA 525

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L     +Y+ +I  L   G++ +A +   D++E    P+++++ +LI    +  + 
Sbjct: 526 NSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQI 585

Query: 188 SKVIELLHKMKEKNV 202
               ELL +M ++ +
Sbjct: 586 DTAFELLEEMSKRGL 600



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K KE++ A  L  E++ +G   D +  +     L     V+ A +L       G
Sbjct: 470 LLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     +Y   ID L K G + E+      L+    + DI +YS LI  L ++G+++ A 
Sbjct: 530 LWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAF 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           EL   + +  L     +YS ++  L + G
Sbjct: 590 ELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           +G    +VVTY+ +++ L   GQ ++A  LF +++     P+V+++  LI+   R  +  
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +E++ +M+ K   P+    + +VD L K
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGK 91


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 124/214 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C+  EIE + +L  E+   G  P+VVI+ TL  G  +  ++E+A  LF EM + 
Sbjct: 168 ILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKL 227

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+ RTYT+ I+GL KNG   +  E++  ++      ++  Y+C+++ LCK GR + A
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    +  ++VTY+ +I GL  + ++++A+ +   M+ + + PN+IT+ TLI G
Sbjct: 288 FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F  + +  K + L   +K + + P     +I+V 
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVS 381



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 123/219 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  EIE A +L+ EM   G+  +   +  L  GLF+    ++ F+++++MQ DG
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   ++ LCK+G   ++ ++F  +R      +I  Y+ LI GLC+  +L  A 
Sbjct: 264 VFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEAN 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +  +++TY+ +I G    G++ KA  L  D++   ++P+++T+  L+ GF
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            R  + S   +++ +M+E+ + P     +I++D  A+++
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 110/213 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  KN   +    +Y +M   G+ P++  +N +   L +  + + AF++FDEM+  
Sbjct: 238 VLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRER 297

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY   I GLC+   + E+ ++   ++      ++  Y+ LIDG C  G+L  A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   L    L   +VTY+I++ G    G    A  +  +MEE  + P+ +T+  LI  
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R +   K I+L   M+E  ++PD    S+++
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 114/235 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK+   + A  ++ EM  +G+  ++V +NTL  GL    ++  A K+ D+M+ DG
Sbjct: 274 VMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG 333

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG C  G + +++ L R L+       +  Y+ L+ G C+ G    A 
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAA 393

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +    VTY+I+I        M+KA  L L MEE  + P+V T+  LIHGF
Sbjct: 394 KMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGF 453

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               + ++   L   M EKN  P+  I + ++    K   S  +L      E +E
Sbjct: 454 CIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   ++  AL+L  ++ S+G+ P +V +N L  G         A K+  EM+  G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYTI ID   ++  + ++++L  ++  L    D+  YS LI G C  G++  A 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF S+       + V Y+ MI G   +G   +A  L  +MEE  +APNV ++  +I   
Sbjct: 464 RLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVL 523

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  +  +   L+ KM +  + P  SI+S++    AKN+  ++S
Sbjct: 524 CKERKSKEAERLVEKMIDSGIDPSTSILSLISR--AKNDSHVSS 565



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 115/224 (51%), Gaps = 2/224 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN Y +++ +  +++ ++EM+  G  P     N L   +       + +  F+E  + 
Sbjct: 99  VIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKS 157

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  ++ I I G C+ G I +S +L   L       ++  Y+ LIDG CK G +E A
Sbjct: 158 KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  + +  LVA+  TY+++I+GL+ +G   +  +++  M+E+ V PN+ T+  +++ 
Sbjct: 218 KDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQ 277

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
             +        ++  +M+E+ V  +    + ++  L + E+ LN
Sbjct: 278 LCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR-EMKLN 320



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+C+  +  GA  +  EM  +GIKP  V +  L         +E+A +L   M+  
Sbjct: 378 ILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEEL 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY++ I G C  G + E+  LF+++    CE +   Y+ +I G CK G    A
Sbjct: 438 GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           L+L   +    L  +V +Y  MI  L  + +  +A  L   M ++ + P+ 
Sbjct: 498 LKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           F +  +  +V DV ++ I+I G    G+++K+ DL +++ E   +PNV+ + TLI G  +
Sbjct: 151 FFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCK 210

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
             E  K  +L  +M +  ++ +    +++++ L KN +       F ++E+ +E
Sbjct: 211 KGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQ---GFEMYEKMQE 261


>gi|40253558|dbj|BAD05505.1| PPR protein-like [Oryza sativa Japonica Group]
 gi|40253737|dbj|BAD05677.1| PPR protein-like [Oryza sativa Japonica Group]
          Length = 297

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 126/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL+L+ +M+  G+ P+++ +N +  GLF+  Q   A +++  + + G
Sbjct: 26  LINGYCKISRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRG 85

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T  I + GLCKN    E++++F+ L ++  +L+ + ++ +I  L +SGR + + 
Sbjct: 86  IQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESK 145

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    L  DVVTY++MI  L  DG ++++ +LFL ME+N   PN      ++   
Sbjct: 146 DLFAALSANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKL 205

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  E  +    L K+ + +   +AS   +++ L++  +
Sbjct: 206 LQKGEIGRAGVYLSKIDKNDFSLEASTAELLILLVSSGK 244



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 36/212 (16%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-------------- 92
           ++ A KL  +M   G+  DT TY+  I+G CK   +  ++ LFR +              
Sbjct: 1   MDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLFRQMVCNGVSPNIITYNI 60

Query: 93  -------------------RILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPRGV 131
                              RI+K  + ++  +C  ++ GLCK+     AL++F +L    
Sbjct: 61  VLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMD 120

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  +  T++IMI  L   G+ D++ DLF  +  N +AP+V+T+  +I   I      +  
Sbjct: 121 VKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLAPDVVTYTLMIENLIEDGLLEESD 180

Query: 192 ELLHKMKEKNVMPDASIVS-IVVDLLAKNEIS 222
            L   M++   +P++ +++ IV  LL K EI 
Sbjct: 181 NLFLSMEKNGCVPNSRMLNCIVRKLLQKGEIG 212


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 117/214 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +++ A ++ + ML   +KPDV+ ++TL  G F +++V++A  +F+ M   
Sbjct: 274 ILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TYTI I+G CKN  + E++ LF+ +        I  YS LIDGLCKSGR+   
Sbjct: 334 GVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYV 393

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +      A+V+TYS +I GL  +G +D+A  LF  M++  + PN  TF  L+ G
Sbjct: 394 WDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDG 453

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +        E+   +  K    +    ++++D
Sbjct: 454 LCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMID 487



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 108/186 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CKNK ++ ALNL+ EM  K + P +V +++L  GL +  ++   + L DEM   
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDR 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+  TY+  IDGLCKNG++  ++ LF  ++      +   ++ L+DGLCK GRL+ A
Sbjct: 404 GQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDA 463

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  L       +V TY++MI G    G +++A  +   ME+N   P+ +TF  +I  
Sbjct: 464 QEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIA 523

Query: 181 FIRINE 186
             + +E
Sbjct: 524 LFKKDE 529



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   A+ L  ++  +  KP+VV+++T+   L +   V  A+ LF EM   G
Sbjct: 170 LINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++AD  TY+  I G C  G + E++ L   + +     ++  Y+ L+D LCK G+++ A 
Sbjct: 230 ISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV+TYS ++ G +   ++ KA  +F  M    V P+V T+  LI+GF
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L  +M +KN++P     S ++D L K+
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM  KGI  DVV ++TL  G     +++ A  L +EM    
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL--------------------------------- 88
           +  +  TY I +D LCK G + E+  +                                 
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 89  --FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
             F  + ++    D+  Y+ LI+G CK+  ++ AL LF  + +  +V  +VTYS +I GL
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++    DL  +M +     NVIT+ +LI G  +     + I L +KMK++ + P+ 
Sbjct: 385 CKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNT 444

Query: 207 SIVSIVVDLLAK 218
              +I++D L K
Sbjct: 445 FTFTILLDGLCK 456



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 1/234 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ AL+ + ++L++G + + V + TL  G+ +I     A KL  ++    
Sbjct: 135 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRL 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  ID LCK   + E+  LF  + +     D+  YS LI G C  G+L+ A+
Sbjct: 195 TKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I++  L  +G++ +A  +   M +  V P+VIT+ TL+ G+
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
             + E  K   + + M    V PD    +I+++   KN++   +L  F  +H++
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQK 368



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%)

Query: 10   KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
            K    A++L   +  KGI+PD+   N L      + Q+   F +  ++ + G   DT T+
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 70   TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
            T  I+GLC  G + +++     L     +L+  +Y  LI+G+CK G    A++L   +  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDG 1059

Query: 130  GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             +   DVV Y+ +I  L     + KA+ LF +M    ++ +V+T+ TLI+GF  + +  +
Sbjct: 1060 RLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKE 1119

Query: 190  VIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             I LL+KM  K + P+    +I+VD L K
Sbjct: 1120 AIGLLNKMVLKTINPNVRTYNILVDALCK 1148



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C   +I    ++ +++L +G  PD V  NTL  GL    QV++A    D++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+G+CK G    +++L + +     + ++  YS +ID LCK   +  A
Sbjct: 159 GFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEA 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    + ADVVTYS +I+G   +G++ +A  L  +M    + PNV T+  L+  
Sbjct: 219 YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +   +L  M +  V PD    S ++D
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ + K K    A++L   +  KGI+PD++  N L      + Q+   F +  ++ + G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T    I GLC  G + +++     L     +L+  +Y  LI+G+CK G    A+
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAI 184

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +   +   +VV YS +I  L     + +A+ LF +M    ++ +V+T+ TLI+GF
Sbjct: 185 KLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  + I LL++M  K + P+    +I+VD L K
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 105/204 (51%), Gaps = 2/204 (0%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LING C   ++  AL+ + ++L++G + + V + TL  G+ +I     A KL  ++    
Sbjct: 1002 LINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRL 1061

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               D   Y   ID LCK+  + ++  LF  + +     D+  Y+ LI G C  G+L+ A+
Sbjct: 1062 TKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAI 1121

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQ--MDKAHDLFLDMEENAVAPNVITFGTLIH 179
             L + +    +  +V TY+I++  L  +G+  +D++  +   ME+N    N +TF  +I 
Sbjct: 1122 GLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIIS 1181

Query: 180  GFIRINEPSKVIELLHKMKEKNVM 203
                 +E  KV +LLH+M  + ++
Sbjct: 1182 ALFEKDENDKVEKLLHEMIARGLL 1205



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 2/218 (0%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILIN +C   +I    ++ +++L +G  PD +   TL  GL    QV +A    D++   
Sbjct: 966  ILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQ 1025

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G   +  +Y   I+G+CK G    +++L R +     + D+  Y+ +ID LCK   +  A
Sbjct: 1026 GFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKA 1085

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              LF  +    + ADVVTY+ +I+G    G++ +A  L   M    + PNV T+  L+  
Sbjct: 1086 YGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDA 1145

Query: 181  FIRINEP--SKVIELLHKMKEKNVMPDASIVSIVVDLL 216
              +  +    + + +L KM++     +A    I++  L
Sbjct: 1146 LCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISAL 1183



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 68/137 (49%)

Query: 85   SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
            +V L   L +   + D+   + LI+  C  G++     +   + +     D +T++ +I+
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 145  GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            GL   GQ++KA      +       N +++GTLI+G  +I +    I+LL K+  +   P
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064

Query: 205  DASIVSIVVDLLAKNEI 221
            D  + + ++D L K+++
Sbjct: 1065 DVVMYNTIIDALCKHQL 1081



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 35/173 (20%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           ++V  F  +  ++    I  ++ ++D   K      A+ L H L    +  D++T +I+I
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVIT------------------------------ 173
           +   + GQ+     +   + +    P+ +T                              
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 174 -----FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                +GTLI+G  +I +    I+LL K+  +   P+  + S ++D L K ++
Sbjct: 162 LNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQL 214


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 130/247 (52%), Gaps = 34/247 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  +++ A  L+ +M  KGI P++V +N L  GL ++ ++ +A +LFD +   G
Sbjct: 658 LISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKG 717

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A ++ TY+  I G CK+  + E+ +LF  ++++    D   Y  LIDG CK+G  E AL
Sbjct: 718 LARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKAL 777

Query: 122 EL--------------FHSLPRGV-----------LVADV---------VTYSIMIHGLY 147
            L              F++L  G            LV D+         VTY+I+I    
Sbjct: 778 SLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHC 837

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G + +A  LF++M++  V PNV+T+ +L+HG+ RI   S++  L  +M  + + PD  
Sbjct: 838 TVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDL 897

Query: 208 IVSIVVD 214
             S++VD
Sbjct: 898 AWSVMVD 904



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GYC+  E++ A   + EML  GI P+ VI   L  G  +     +AF  F  M   G
Sbjct: 553 FIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQG 612

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D +T+++ I GL KNG + E++ +F  L       D+  Y+ LI  LCK G L+ A 
Sbjct: 613 VLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAF 672

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  +  ++VTY+ +I+GL   G++ KA +LF  + E  +A N +T+ T+I G+
Sbjct: 673 ELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGY 732

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    ++  +L H MK   V PD+ +   ++D   K
Sbjct: 733 CKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCK 769



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 120/228 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++E A +L+SEM   GIKPD+  +N L  G +++  +E+A++L  E++++ 
Sbjct: 378 LIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKEN 437

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+       ++GLC  G +  + ELF+ +     + +I  Y+ ++ GL K GR E A+
Sbjct: 438 LTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAI 497

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    L  DV  Y+ +I G    G+M++     ++M    + PNV T+G  IHG+
Sbjct: 498 KILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGY 557

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            R  E         +M +  + P+  I + ++D   K+  +  +   F
Sbjct: 558 CRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKF 605



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 115/214 (53%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  KN +++ A+ ++SE+L KG+ PDV  + +L   L +   ++ AF+L D+M + 
Sbjct: 622 VLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKK 681

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK G I ++ ELF  +       +   YS +I G CKS  L  A
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LFH +    +  D   Y  +I G    G  +KA  LFL M E  +A +   F  LI G
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIA-STPAFNALIDG 800

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F ++ +  +  +L+  M + ++ P+    +I+++
Sbjct: 801 FFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIE 834



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 116/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+ K      ++  EM + G+KPD V +  L  G  +   +  AF++ +EM    
Sbjct: 308 LIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARK 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   I GLCK G + ++ +LF  + ++  + DIQ Y+CLI+G  K   +E A 
Sbjct: 368 IKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAY 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  L A+      +++GL + G + +A++LF +M    + PN++ + T++ G 
Sbjct: 428 ELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGL 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           ++     + I++L  MK++ + PD    + V+
Sbjct: 488 VKEGRFEEAIKILGVMKDQGLSPDVFCYNTVI 519



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 107/216 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN YC+  ++E   ++  +M  KG  P++V ++ +  GL     V+ A +L   M   G
Sbjct: 238 LINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKG 297

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   IDG C+     E   +   +  +  + D  AY+ LI+G  K   +  A 
Sbjct: 298 LLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAF 357

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +  +  TY  +IHGL   G ++KA DLF +M    + P++ T+  LI G+
Sbjct: 358 QVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGY 417

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            ++    K  ELL ++K++N+  +A +   +V+ L 
Sbjct: 418 YKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLC 453



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+  +++ AL L   M +KG+ PD  I+ TL  G     +      + DEM   
Sbjct: 272 VVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTM 331

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  I+G  K   I  + ++   +   K +L+   Y  LI GLCK G LE A
Sbjct: 332 GLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKA 391

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    +  D+ TY+ +I G Y    M+KA++L +++++  +  N    G +++G
Sbjct: 392 EDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNG 451

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                + ++  EL  +M    + P+  I + +V  L K
Sbjct: 452 LCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVK 489



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 37/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG C   ++  A  L+ EM+S G+KP++VI+ T+  GL +  + E A K+   M+  G
Sbjct: 448 IVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQG 507

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           ++ D   Y   I G CK G + E       +     + ++  Y   I G C++G ++ A 
Sbjct: 508 LSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAE 567

Query: 121 ---LELFHS--------------------------------LPRGVLVADVVTYSIMIHG 145
              +E+  S                                L +GVL  DV T+S++IHG
Sbjct: 568 RSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVL-PDVQTHSVLIHG 626

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  +G++ +A  +F ++ +  + P+V T+ +LI    +  +     EL   M +K + P+
Sbjct: 627 LSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPN 686

Query: 206 ASIVSIVVDLLAK 218
               + +++ L K
Sbjct: 687 IVTYNALINGLCK 699



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 107/217 (49%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYCK+  +  A  L+  M   G+ PD  ++  L  G  +    E+A  LF  M  +G
Sbjct: 728 IIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG 787

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A+ T  +   IDG  K G ++E+ +L   +       +   Y+ LI+  C  G ++ A 
Sbjct: 788 IAS-TPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAE 846

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  ++ +V+TY+ ++HG    G+  +   LF +M    + P+ + +  ++   
Sbjct: 847 QLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAH 906

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++     K ++L+  M  + V    ++ +I++D L K
Sbjct: 907 LKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCK 943



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 1/171 (0%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           K + E+     ++    + I ID   K G++ E+V +F   +  +  + +   + L   L
Sbjct: 149 KCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDL 208

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            K  R+E+  +++  +  G +V DV TY+ +I+     G++++   +  DMEE    PN+
Sbjct: 209 LKGNRVELFWKVYKGM-LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNL 267

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
           +T+  +I G  R  +  + +EL   M  K ++PD  I + ++D   + + S
Sbjct: 268 VTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRS 318



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 1/199 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK    E AL+L+  M+ +GI       N L  G F++ ++  A++L ++M  + 
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGIASTPAF-NALIDGFFKLGKLIEAYQLVEDMVDNH 821

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYTI I+  C  G I E+ +LF  ++      ++  Y+ L+ G  + GR     
Sbjct: 822 ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMF 881

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D + +S+M+     +G   KA  L  DM    V      +  LI   
Sbjct: 882 SLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDAL 941

Query: 182 IRINEPSKVIELLHKMKEK 200
            + N  S+V+++L +++++
Sbjct: 942 CKHNNLSEVLKVLDEVEKQ 960



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C    I+ A  L+ EM  + + P+V+ + +L  G   I +    F LFDEM   
Sbjct: 831 ILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVAR 890

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   +++ +D   K G  +++++L   +      +    Y+ LID LCK   L   
Sbjct: 891 GIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEV 950

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           L++   + +      + T   ++   +  G+ D+A
Sbjct: 951 LKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEA 985



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY +        +L+ EM+++GIKPD +  + +     +     +A KL D+M  +G
Sbjct: 867 LLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEG 926

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V      YTI ID LCK+  + E +++   +     +L +     L+    ++GR + AL
Sbjct: 927 VNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEAL 986

Query: 122 ELFHSLPRGVL 132
            +  S+ R  L
Sbjct: 987 RVLESMVRSFL 997


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 1/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+ +++  ALNL SEM +KG KPD+  +N+L  GL ++ +++ AF+LF  M  DG
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  TY   I  L + G   +++ L   +    C LD   Y+ LI   CK G +E  L
Sbjct: 526 AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGL 585

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    L AD ++ +IMI+GL   G++D A +   D       P+++T+ ++++G 
Sbjct: 586 ELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGL 645

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            ++    + + L  +++ + V PDA   +  +    K E  +N   SF
Sbjct: 646 CKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCK-EGMVNDACSF 692



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   +  A +L +EM  +G +P+V+ +  L  GL +   +E A  +  EM   
Sbjct: 395 ILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR 454

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++  Y   I  LC+   +  ++ L   +    C+ D+  Y+ LI GLCK  R++ A
Sbjct: 455 GLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LFH++     VA+ VTY+ +IH L   G   KA  L  DM       + IT+  LI  
Sbjct: 515 FRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKA 574

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F ++    K +EL  +M    +  D    +I+++ L K
Sbjct: 575 FCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEIEGALNLYSE-MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LINGY  + +++ A +  +E M++ G +PD+  +N L  GL +   +  A  L +EM R 
Sbjct: 360 LINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY I ++GLCK G + E+  +   +      ++   Y+CLI  LC+  ++ +A
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVA 479

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +       D+ TY+ +I+GL    ++D+A  LF +M  +    N +T+ TLIH 
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 181 FIRINEPSKVIELLHKM 197
            +R     K + L++ M
Sbjct: 540 LLRRGAFQKALTLVNDM 556



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 35/261 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++   C   E++ A +L  +M   G  P+ +++ TL   L + +QV  A KL +EM   
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVM 282

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D +T+   I GLCK   I ++ +L   + +     D   Y  L+ GLC+ G+L  A
Sbjct: 283 GCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA 342

Query: 121 LELFHSLP-----------RGVLVA---------------------DVVTYSIMIHGLYN 148
            ++   +P            G +++                     D+ TY+I++HGL  
Sbjct: 343 RKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCK 402

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G +  A DL  +M      PNVIT+  L++G  +     +   +LH+M  + +  ++ I
Sbjct: 403 EGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVI 462

Query: 209 VSIVVDLLAKNE---ISLNSL 226
            + ++  L + E   ++LN L
Sbjct: 463 YNCLICALCRKEKVHVALNLL 483



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 32/236 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   +  ++  AL L  EM   G  PDV   N +  GL +++++  A KL D M   G
Sbjct: 259 LIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRG 318

Query: 62  VAADTRTYTIFIDGLCK--------------------------NGYIVES------VELF 89
              D  TY   + GLC+                          NGY++          L 
Sbjct: 319 FYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLN 378

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
            T+     + DI  Y+ L+ GLCK G L  A +L + + R     +V+TY+I+++GL   
Sbjct: 379 ETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKA 438

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           G +++A  +  +M    +  N + +  LI    R  +    + LL +M  K   PD
Sbjct: 439 GLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPD 494



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 11/244 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C     + A N++ +MLSKG+ P V     +   L   ++V+ A  L  +M + 
Sbjct: 192 ILVTGNCP----QVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH 247

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++  Y   I  L +   + E+++L   + ++ C  D+Q ++ +I GLCK  ++  A
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDA 307

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       D +TY  ++HGL   G++++A  + + +      PN     TLI+G
Sbjct: 308 TKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNNAILNTLING 363

Query: 181 FIRINEPSKVIELLHK-MKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
           ++   +  +    L++ M      PD    +I++  L K E SL S     V+E      
Sbjct: 364 YVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCK-EGSL-SFARDLVNEMSRRGC 421

Query: 240 ESNV 243
           E NV
Sbjct: 422 EPNV 425



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK  +++ A     + +++G  PD+V +N++  GL ++ +++ A  LFD +Q +
Sbjct: 605 IMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVE 664

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF 89
           GV  D  TY  FI   CK G + ++   F
Sbjct: 665 GVRPDAFTYNTFISWQCKEGMVNDACSFF 693



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 1/168 (0%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDG 110
           KL  +M+ +G+      + I +    K G   +++ L   +R +  CE   ++Y  +++ 
Sbjct: 133 KLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEI 192

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L      ++A  +F+ +    +   V T+ I++  L    ++D A  L  DM ++   PN
Sbjct: 193 LVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPN 252

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            I + TLIH   + N+ S+ ++LL +M     MPD    + V+  L K
Sbjct: 253 SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCK 300


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 122/220 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+N  +  AL +  +ML +G   DVV +NT+  GL +   +  A  LFDEM   
Sbjct: 365 ILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVER 424

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I G CK G + +++ LF  +     + DI  Y+ LIDG CK+  +E A
Sbjct: 425 GVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKA 484

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL++ +    +  + ++Y+I+++G  N G + +A  L+ +M    + P ++T  T+I G
Sbjct: 485 NELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKG 544

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + R  + SK  E L KM  + V PD+   + +++   K E
Sbjct: 545 YCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGE 584



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 115/208 (55%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+N     A +++S+ML +G+ PD++  ++L         +++A   F +M+  G+  D 
Sbjct: 301 CRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDN 360

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YTI I+G C+NG + E++E+   +    C LD+ AY+ +++GLCK   L  A  LF  
Sbjct: 361 VIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDE 420

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +V D  T++ +IHG   +G M KA  LF  M +  + P+++T+  LI GF +  E
Sbjct: 421 MVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTE 480

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVD 214
             K  EL ++M  + + P+    +I+V+
Sbjct: 481 MEKANELWNEMISRKIFPNHISYAILVN 508



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 113/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +  AL+L+  M  K IKPD+V +N L  G  +  ++E+A +L++EM    
Sbjct: 436 LIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRK 495

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y I ++G C  G++ E+  L+  +     +  +   + +I G C+SG L  A 
Sbjct: 496 IFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKAD 555

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +    +  D +TY+ +I+G      MDKA  L   ME   + P+V+T+  +++GF
Sbjct: 556 EFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGF 615

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R     +   +L KM E+ + PD S  + +++
Sbjct: 616 CRQGRMQEAELILRKMIERGIDPDRSTYTTLIN 648



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK K +  A  L+ EM+ +G+ PD     TL  G  +   + +A  LF  M +  
Sbjct: 401 ILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKN 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY I IDG CK   + ++ EL+  +   K   +  +Y+ L++G C  G +  A 
Sbjct: 461 IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAF 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  +   +VT + +I G    G + KA +    M    V P+ IT+ TLI+GF
Sbjct: 521 RLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGF 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++     K   L++KM+ K + PD    +++++
Sbjct: 581 VKGEYMDKAFFLINKMETKGLQPDVVTYNVILN 613



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 107/205 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK  E+E A  L++EM+S+ I P+ + +  L  G   +  V  AF+L+DEM R 
Sbjct: 470 ILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRK 529

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T    I G C++G + ++ E    +       D   Y+ LI+G  K   ++ A
Sbjct: 530 GIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKA 589

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    L  DVVTY+++++G    G+M +A  +   M E  + P+  T+ TLI+G
Sbjct: 590 FFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLING 649

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           ++  +   +      +M ++  +PD
Sbjct: 650 YVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN YC+   +  A  + + M  KG+KP +  +N +  GL +  +  RA  +F+EM   G
Sbjct: 226 LINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ DT TY   +   C+N   +E+ ++F  +       D+ ++S LI    ++G L+ AL
Sbjct: 286 LSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQAL 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK--------------------------- 154
             F  +    LV D V Y+I+I+G   +G M +                           
Sbjct: 346 MYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGL 405

Query: 155 --------AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                   A+ LF +M E  V P+  TF TLIHG  +     K + L   M +KN+ PD 
Sbjct: 406 CKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDI 465

Query: 207 SIVSIVVDLLAK 218
              +I++D   K
Sbjct: 466 VTYNILIDGFCK 477



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K   ++ A  +Y+E+   GI+ +V   N +   L + H+++       +M++ G
Sbjct: 156 LLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I+  C+ G + E+ E+  ++     +  +  Y+ +I+GLCK GR   A 
Sbjct: 216 IFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAK 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +    L  D  TY+ ++     +    +A D+F DM    V+P++I+F +LI   
Sbjct: 276 GVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVS 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R     + +     MK   ++PD  I +I+++   +N
Sbjct: 336 SRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CK+ +I+       +M  KGI  D+V +NTL         +  AF++ + M   
Sbjct: 190 IMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGK 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I+GLCK G  V +  +F  +  +    D   Y+ L+   C++     A
Sbjct: 250 GLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEA 309

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            ++F   L RGV   D++++S +I     +G +D+A   F DM+ + + P+ + +  LI+
Sbjct: 310 KDIFSDMLHRGV-SPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILIN 368

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           G+ R    S+ +E+  KM E+    D    + +++ L K ++
Sbjct: 369 GYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKL 410



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 107/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y + +++    + +  +  KG    +   N+L  GL ++  V+ A+++++E+ R 
Sbjct: 120 LLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARS 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T  I ++ LCK+  I +       +       DI  Y+ LI+  C+ G L  A
Sbjct: 180 GIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ +S+    L   + TY+ +I+GL   G+  +A  +F +M    ++P+  T+ TL+  
Sbjct: 240 FEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVE 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R N   +  ++   M  + V PD    S ++ + ++N
Sbjct: 300 SCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRN 338



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 78/156 (50%)

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D   + + I    +   + E  + F+ LR     + I A + L+ GL K G +++A E
Sbjct: 112 GVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWE 171

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +++ + R  +  +V T +IM++ L  D ++D      +DME+  +  +++T+ TLI+ + 
Sbjct: 172 VYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYC 231

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           R     +  E+++ M  K + P     + V++ L K
Sbjct: 232 REGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCK 267



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/178 (17%), Positives = 79/178 (44%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           D ++ + L     +  ++      F  ++R G           + GL K G++  + E++
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVY 173

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             +     EL++   + +++ LCK  +++        + +  + AD+VTY+ +I+    +
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCRE 233

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
           G + +A ++   M    + P + T+  +I+G  +     +   + ++M    + PD +
Sbjct: 234 GLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTT 291


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 118/218 (54%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEMQRD 60
           L+NG CKN  ++ A  L   ++ KG  P+V+ ++TL  GL  E+  V  A KLF  + + 
Sbjct: 121 LVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY I IDGL K   + E+ ELF  L     E D   Y+  IDGLCK+GR+E A
Sbjct: 178 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDA 237

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   +     V DVV+++ +I+GL  + ++D+A  L   ME    +PN I+F TLI G
Sbjct: 238 LLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICG 297

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R  +  K +    +M ++ V P     +I+VD L K
Sbjct: 298 QCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 3/208 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G CK   +E AL +  +M  KG  PDVV HN +  GL +  +V+ A  L   M+  
Sbjct: 223 VFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK 282

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS---GRL 117
           G + +  ++   I G C+ G   +++  F+ +     +  +  Y+ L+DGLCK+   GR+
Sbjct: 283 GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 342

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A+ LF ++     V DVVTYS +I GL   G++D A  L   ME     PNV T+ +L
Sbjct: 343 KEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSL 402

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPD 205
           I G   + +  + +EL   M EK  +PD
Sbjct: 403 ISGLCGLEKVDEALELFVAMVEKGCVPD 430



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   LINGYCKN-KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G C+  + +  AL L+  +L +G +P+V  +N L  GL +  +V  AF+LF  + + 
Sbjct: 153 LISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKH 212

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TYT+FIDGLCK G + +++ + + +    C  D+ +++ +I+GLCK  R++ A
Sbjct: 213 GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA 272

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +       + ++++ +I G    G+  KA   F +M +  V P V+T+  L+ G
Sbjct: 273 EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDG 332

Query: 181 FIRINEPSKV---IELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  ++   I L   M EK  +PD    S ++D L K
Sbjct: 333 LCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGK 373



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  E++ AL ++   + +G  PDVV +N L  G  +  +++ A ++   M  + 
Sbjct: 51  LLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSEN 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGR-LEI 119
           +  D  TY   ++GLCKNG + E+    R L + K    ++  YS LI GLC+  R +  
Sbjct: 111 LVPDVVTYNSLVNGLCKNGRVDEA----RMLIVDKGFSPNVITYSTLISGLCRELRGVSE 166

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+LF S+ +     +V TY+I+I GL  + ++++A +LF  + ++ + P+ IT+   I 
Sbjct: 167 ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G  +       + +L  M EK  +PD    + V++ L K +
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 267



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 4/200 (2%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M   G  P+ + +N L  GL    ++  A  L++ M + G + D  TY   + G CK G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + E++++F          D+  Y+ LI+G CK+ +L+ A  +   +    LV DVVTY+ 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR-INEPSKVIELLHKMKEK 200
           +++GL  +G++D+A  L +D      +PNVIT+ TLI G  R +   S+ ++L   + ++
Sbjct: 121 LVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 201 NVMPDASIVSIVVDLLAKNE 220
              P+    +I++D L K +
Sbjct: 178 GYEPEVPTYNILIDGLLKED 197


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 112/197 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK K ++ A+NL+ EM  K I PDVV +N L  GL ++ ++  + +L DEM+  
Sbjct: 257 IIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSI 316

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCKN ++ +++ L + ++    + ++  Y+ LIDGLCK GRLE A
Sbjct: 317 GKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDA 376

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +        V TY++MI+GL   G  D+A  L   ME+NA  P+ +++ T+I+ 
Sbjct: 377 YVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYA 436

Query: 181 FIRINEPSKVIELLHKM 197
                E  K  +LL  M
Sbjct: 437 LSEKGETVKTNKLLCAM 453



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 110/183 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK+++ + A+NL + M+ KG+KP+VV +  +  G   ++QV +A  +F+ M ++
Sbjct: 187 ILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQE 246

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   Y I I+GLCK   + E++ LF+ +   K   D+  Y+ LIDGLCK G++  +
Sbjct: 247 GVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTS 306

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   +       D++TY+ ++H L  +  +D+A  L  ++++  + PNV T+ TLI G
Sbjct: 307 LELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDG 366

Query: 181 FIR 183
             +
Sbjct: 367 LCK 369



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 122/220 (55%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC   ++  ALN+++ M+ +G++P+V  +N +  GL +  +V+ A  LF EM    
Sbjct: 223 IMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKK 282

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY I IDGLCK G I  S+EL   +R +   +DI  Y+ L+  LCK+  L+ A+
Sbjct: 283 INPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAI 342

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +V TY+ +I GL  DG+++ A+ +F ++        V T+  +I+G 
Sbjct: 343 TLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGL 402

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNE 220
            +     + + LL +M++   +PDA S  +I+  L  K E
Sbjct: 403 CKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGE 442



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N YC    I    ++ +++L  G +P+ +   TL  G+    Q   A    D +   
Sbjct: 50  ILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAH 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y I ++GLCK G    ++++ R   +     D+  YS +ID LCK   +  A
Sbjct: 110 GFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWV---NADVVMYSTIIDSLCKGKFVTDA 166

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  +    +  +V T+SI++  L  D +  +A +L   M +  V PNV+T+G ++ G
Sbjct: 167 YRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDG 226

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +  +N+ +K + + + M ++ V P+    +I+++ L K +
Sbjct: 227 YCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKK 266



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL+NG CK  E   A+    +ML K  +  DVV+++T+   L +   V  A++L+ EM  
Sbjct: 120 ILMNGLCKMGETRAAM----QMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIA 175

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  +  T++I +D LCK+    +++ L   +     + ++  Y  ++DG C   ++  
Sbjct: 176 KGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNK 235

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL +F+ + +  +  +V  Y+I+I+GL    ++D+A +LF +M    + P+V+T+  LI 
Sbjct: 236 ALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILID 295

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  ++ + S  +EL+ +M+      D    + ++  L KN
Sbjct: 296 GLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKN 335


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN YCK  ++E A  ++ +M+     P+ V  NTL  G  +   +E A KLF EM++ 
Sbjct: 248 IIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI 307

Query: 61  GVAADTRTYTIFIDGLCKN-GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G  A   TY   ID LCK  G +  +V+LF  L        I  Y+ LI G C + RL  
Sbjct: 308 GCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSE 367

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A++ F  +  G    +V+TYSI+I GL    +M +A     DM+ +   P V+T+G LI+
Sbjct: 368 AMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLIN 426

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF +  E    +    KMK     P+  I + ++D L K E
Sbjct: 427 GFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAE 467



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G+CK  ++  A++++S+M S G+ P+    NTL +GL EI Q+  A KLF EMQ  
Sbjct: 37  VLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAG 96

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC----KSGR 116
                + ++ I + G    G + +++   + +R     +    Y+ ++ GLC     + R
Sbjct: 97  PFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANR 156

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           LE A+E F  +    +  D+ +Y I++  L + G+M +AH LF  M     +P+++T+  
Sbjct: 157 LEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNV 213

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L+ G+ +I +  +   L+ ++ +    P+    SI+++   K
Sbjct: 214 LMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCK 255



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 4/180 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C  + +  A+  + EM  K   P+V+ ++ L  GL ++ +++ A K  ++M+  G
Sbjct: 355 LIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHG 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   I+G CK G +  ++  F  +++  C  +   ++ LIDGLCK+ R    L
Sbjct: 414 YTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGL 473

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       DV+TY+ +I GL +  +++ A  LF  M   A APNV TF  LI G 
Sbjct: 474 RLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGL 530



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++    +  +  A  L+S M      PD++ +N L  G  +I Q   A  L  E+ + 
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY+I I+  CK   + E+ E+F  +    C  +   ++ LI G CK+G LE A
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYND-GQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ++LF  + +    A +VTY+ +I  L    G +  A DLF  +E   + P ++T+ +LI 
Sbjct: 298 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 357

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S+ ++   +M E    P+    SI++D L K
Sbjct: 358 GFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCK 395



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 2/197 (1%)

Query: 2   LINGYCKNKE-IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+  CK +  +  A++L++++   G+ P +V +N+L  G  +  ++  A + FDEM+  
Sbjct: 319 LIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK 378

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A +  TY+I IDGLCK   + E+ +    ++       +  Y  LI+G CK G L+ A
Sbjct: 379 -CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSA 437

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  F  +       + V ++ +I GL    + +    L   M      P+VIT+  LI G
Sbjct: 438 LLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISG 497

Query: 181 FIRINEPSKVIELLHKM 197
               N       L   M
Sbjct: 498 LCSANRVEDAQRLFDGM 514



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK + ++ A     +M + G  P VV +  L  G  +  +++ A   F++M+  
Sbjct: 388 ILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLA 447

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A +T  +   IDGLCK     + + L   +    C+ D+  Y+CLI GLC + R+E A
Sbjct: 448 GCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDA 507

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
             LF  +       +V T++ +I GL    ++++A ++ 
Sbjct: 508 QRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 4/187 (2%)

Query: 35  NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           N L  GL    + ++A +LF E+     A +  TY + I G CK G + ++V +F  ++ 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
                +    + L+ GLC+ G++  AL+LF  +  G  +    +++I++ G +  G++  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS----KVIELLHKMKEKNVMPDASIVS 210
           A     DM +++ +    T+  ++ G    N+ +    + +E   +MK   V PD     
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 211 IVVDLLA 217
           I++  L+
Sbjct: 181 ILLSALS 187



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           +   Y+ LI G CK G++  A+ +F  +    L+ +  T + ++ GL   GQM  A  LF
Sbjct: 31  NAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLF 90

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +M+     P   +   L+ GF         +  L  M++ +        ++V+  L   
Sbjct: 91  REMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWE 150

Query: 220 EISLNSL 226
             S N L
Sbjct: 151 NKSANRL 157


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+ +++  ALNL SEM +KG KPD+  +N+L  GL ++ +++ AF+LF  M  DG
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  TY   I  L + G   +++ L   +    C LD   Y+ LI   CK G +E  L
Sbjct: 526 AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGL 585

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    L AD ++ +IMI+GL   G++D A +   D       P+++T+ ++++G 
Sbjct: 586 ELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGL 645

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++    + + L  +++ + V PDA   +  +    K
Sbjct: 646 CKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCK 682



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   +  A +L +EM  +G +P+V+ +  L  GL +   +E A  +  EM   
Sbjct: 395 ILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR 454

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++  Y   I  LC+   +  ++ L   +    C+ D+  Y+ LI GLCK  R++ A
Sbjct: 455 GLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LFH++     VA+ VTY+ +IH L   G   KA  L  DM       + IT+  LI  
Sbjct: 515 FRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKA 574

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F ++    K +EL  +M    +  D    +I+++ L K
Sbjct: 575 FCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEIEGALNLYSE-MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LINGY  + +++ A +  +E M++ G +PD+  +N L  GL +   +  A  L +EM R 
Sbjct: 360 LINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY I ++GLCK G + E+  +   +      ++   Y+CLI  LC+  ++ +A
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVA 479

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +       D+ TY+ +I+GL    ++D+A  LF +M  +    N +T+ TLIH 
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 181 FIRINEPSKVIELLHKM 197
            +R     K + L++ M
Sbjct: 540 LLRRGAFQKALTLVNDM 556



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 35/261 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++   C   E++ A +L  +M   G  P+ +++ TL   L + +QV  A KL +EM   
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVM 282

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D +T+   I GLCK   I ++ +L   + +     D   Y  L+ GLC+ G+L  A
Sbjct: 283 GCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA 342

Query: 121 LELFHSLP-----------RGVLVA---------------------DVVTYSIMIHGLYN 148
            ++   +P            G +++                     D+ TY+I++HGL  
Sbjct: 343 RKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCK 402

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G +  A DL  +M      PNVIT+  L++G  +     +   +LH+M  + +  ++ I
Sbjct: 403 EGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVI 462

Query: 209 VSIVVDLLAKNE---ISLNSL 226
            + ++  L + E   ++LN L
Sbjct: 463 YNCLICALCRKEKVHVALNLL 483



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 93/182 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   +    + AL L ++ML +G   D + +N L     ++  +E+  +L+++M  DG
Sbjct: 536 LIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDG 595

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ADT +  I I+GLCK G +  + E  R         DI  Y+ +++GLCK GR++ AL
Sbjct: 596 LGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEAL 655

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L    +  D  TY+  I     +G ++ A   F    EN   P+ +T+  L++  
Sbjct: 656 NLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTL 715

Query: 182 IR 183
           ++
Sbjct: 716 LK 717



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 32/236 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   +  ++  AL L  EM   G  PDV   N +  GL +++++  A KL D M   G
Sbjct: 259 LIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRG 318

Query: 62  VAADTRTYTIFIDGLCK--------------------------NGYIVES------VELF 89
              D  TY   + GLC+                          NGY++          L 
Sbjct: 319 FYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLN 378

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
            T+     + DI  Y+ L+ GLCK G L  A +L + + R     +V+TY+I+++GL   
Sbjct: 379 ETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKA 438

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           G +++A  +  +M    +  N + +  LI    R  +    + LL +M  K   PD
Sbjct: 439 GLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPD 494



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 11/244 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C     + A N++ +MLSKG+ P V     +   L   ++V+ A  L  +M + 
Sbjct: 192 ILVTGNCP----QVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH 247

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++  Y   I  L +   + E+++L   + ++ C  D+Q ++ +I GLCK  ++  A
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDA 307

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       D +TY  ++HGL   G++++A  + + +      PN     TLI+G
Sbjct: 308 TKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNNAILNTLING 363

Query: 181 FIRINEPSKVIELLHK-MKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
           ++   +  +    L++ M      PD    +I++  L K E SL S     V+E      
Sbjct: 364 YVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCK-EGSL-SFARDLVNEMSRRGC 421

Query: 240 ESNV 243
           E NV
Sbjct: 422 EPNV 425



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +CK   IE  L LY +M+  G+  D +  N +  GL ++ +V+ AF+   +    G
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G I E++ LF  L++     D   Y+  I   CK G +  A 
Sbjct: 631 FVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDAC 690

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
             F+       V   +T++++++ L    Q ++ ++ F+
Sbjct: 691 LFFYRGIENGFVPSNLTWNVLVYTLLK--QSNQENNFFV 727



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK  +++ A     + +++G  PD+V +N++  GL ++ +++ A  LFD +Q +
Sbjct: 605 IMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVE 664

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF 89
           GV  D  TY  FI   CK G + ++   F
Sbjct: 665 GVRPDAFTYNTFISWQCKEGMVNDACLFF 693



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 1/168 (0%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDG 110
           KL  +M+ +G+      + I +    K G   +++ L   +R +  CE   ++Y  +++ 
Sbjct: 133 KLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEI 192

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L      ++A  +F+ +    +   V T+ I++  L    ++D A  L  DM ++   PN
Sbjct: 193 LVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPN 252

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            I + TLIH   + N+ S+ ++LL +M     MPD    + V+  L K
Sbjct: 253 SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCK 300


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 1/215 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK   +  AL +  EM  + I PDV+ +  L  GL  + QV+ AF L +E+ R G
Sbjct: 277 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  +DGLCK+G I E+ +L + + +  C   +  YS L+ G C++G +  A 
Sbjct: 337 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAR 396

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +V  + TY+I++ GL  DG + KA  L  D+      P+V+T+ TLI G 
Sbjct: 397 EILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGL 456

Query: 182 IRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDL 215
            + N   +  +L  +M  +   P D ++ S+V  L
Sbjct: 457 CKANRVREACDLADEMASRGCFPNDVTLGSVVFGL 491



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 113/219 (51%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK+ ++E AL +   M   G  PDV+ +N++   L    +V  A ++   M   
Sbjct: 209 ILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS-- 266

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + D  T+   +DG CK G +  ++E+   +       D+  Y+ L++GLC+ G++++A
Sbjct: 267 -CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVA 325

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R   + DV+ Y+ ++ GL   G++++AH L  +M        V+ + +L+ G
Sbjct: 326 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSG 385

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + R     K  E+L +M   N++P     +IV+  L K+
Sbjct: 386 YCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKD 424



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 122/255 (47%), Gaps = 40/255 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK  +   AL     +    + PDV I N L  GLF+    ++A KLF+ M+  
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESS 126

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL-------------------------FRTLRIL 95
            V  +  TY   I GLCK+G + ++ EL                         +R  RI 
Sbjct: 127 RVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIR 186

Query: 96  K-CEL-----------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           + C             D+   + L+ G+CK G +E ALE+   +     V DV+TY+ +I
Sbjct: 187 EACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSII 246

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           H L   G++ +A ++   M   + +P+++TF TL+ GF +     + +E+L +M  +N++
Sbjct: 247 HALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENIL 303

Query: 204 PDASIVSIVVDLLAK 218
           PD    +I+V+ L +
Sbjct: 304 PDVITYTILVNGLCR 318



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK+ EIE A  L  EM  +G +  VV++++L  G      V +A ++  EM    
Sbjct: 347 LVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSIN 406

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY I + GL K+G I ++V L   L       D+  Y+ LIDGLCK+ R+  A 
Sbjct: 407 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 466

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L   +  RG    DV   S+ + GL   G++D A  L ++M     APNV+ + +LI G
Sbjct: 467 DLADEMASRGCFPNDVTLGSV-VFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDG 525

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             + +       +L  M+ + V  D
Sbjct: 526 LCKSDRMDDACMVLDAMRGQGVALD 550



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y ++L  G  P++V    L  G  +  Q  RA +    +    VA D   + + I GL 
Sbjct: 49  VYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLF 108

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR--GVLVAD 135
           K+G   ++V+LF  +   + + +I  Y+ +I GLCKSG LE A EL   + R  G    D
Sbjct: 109 KDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPD 168

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           +VTY+ +I+  Y   ++ +A      M+   + P+V+T   L+ G  +  +  + +E+L 
Sbjct: 169 IVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILD 228

Query: 196 KMKEKNVMPD 205
            MK    +PD
Sbjct: 229 GMKLAGPVPD 238



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 2/196 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G K DV  +N L   L +     R  K++ ++   G + +  T+ I I G CK G  + +
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRA 81

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           +E  R L       D+  ++ LI GL K G  + A++LF ++    +  ++VTY+ +I G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISG 141

Query: 146 LYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           L   G ++KA +L  +M  +    AP+++T+ TLI+ F R +   +      KMK   + 
Sbjct: 142 LCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGIN 201

Query: 204 PDASIVSIVVDLLAKN 219
           PD    +I+V  + K+
Sbjct: 202 PDVLTCNILVSGICKD 217



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 1/162 (0%)

Query: 50  AFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           A + FD   ++DG   D  +Y   +D L K+G+   + ++++ L    C  ++  +  LI
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILI 69

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            G CK+G+   ALE   +L    +  DV  ++++IHGL+ DG  D+A  LF +ME + V 
Sbjct: 70  RGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVK 129

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           P ++T+ T+I G  +     K  ELL +M  K       IV+
Sbjct: 130 PEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVT 171



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 98/220 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+   +  A  + +EM+S  + P +  +N +  GL +   + +A  L  ++   G
Sbjct: 382 LVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARG 441

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   IDGLCK   + E+ +L   +    C  +      ++ GLC+ GR++ A 
Sbjct: 442 YVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAW 501

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R     +VV Y+ +I GL    +MD A  +   M    VA +   +  LI   
Sbjct: 502 SLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSM 561

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                 ++ + +  +M  +  +PD S    + +    N +
Sbjct: 562 SHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSV 601



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 2/178 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G  K+  I  A++L S+++++G  PDVV +NTL  GL + ++V  A  L DEM   
Sbjct: 416 IVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASR 475

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T    + GLC+ G + ++  L   +   +   ++  Y+ LIDGLCKS R++ A
Sbjct: 476 GCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDA 535

Query: 121 LELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             +  ++ RG  VA D   Y  +I  + + G++ +A  ++ +M      P+  T  TL
Sbjct: 536 CMVLDAM-RGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 1/218 (0%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I G CK  ++   + L  +MLS    PD+V  NT+   + + ++V+ A++LF+ +Q  G
Sbjct: 1129 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 1188

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   + GLCK+    ++  L R + R   C  DI  Y+ +IDGLCKS R++ A
Sbjct: 1189 CTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 1248

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +LF  +    L  D VTYSI+I  L     MD+A+++   M +N   P  IT+GTLI G
Sbjct: 1249 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 1308

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F +     K +E+L  +  K   PD    SI +D L+K
Sbjct: 1309 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK 1346



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI+G C+  +I  A  L  EM   G+  +V++HN +  GL    +++ A +LF EM+  
Sbjct: 882  ILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEES 941

Query: 61   G-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G    D  TY+  +D L K+G + ++  L   +    C  ++  YS L+ GLCK+G+L+ 
Sbjct: 942  GSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDE 1001

Query: 120  ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            A  L   + R     ++VTY+ +I G    G++D+A+ L  +M +    PNV+T+  L+ 
Sbjct: 1002 ATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 1061

Query: 180  GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             F +  +    I L+  M EK  +P+    + ++D+  K +
Sbjct: 1062 AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 1102



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 116/219 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK K +  A +    M+     PDVV +N++  GL +  ++  AF LFD M+  
Sbjct: 480 ILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAA 539

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY+I I   CK+  +  + ++   ++  KC  D+  YS LI+GLCK+G ++ A
Sbjct: 540 GVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKA 599

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +       ++VTY+ +I GL    ++++A ++   M + +  P+ IT+  LI+G
Sbjct: 600 FDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLING 659

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +   +   +L +MK+K  +PD      ++  L K 
Sbjct: 660 LCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKT 698



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 111/216 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   I+ A  L    +     PDVV ++ L   L +  ++  A    D M ++ 
Sbjct: 446 LIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNR 505

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   +DGLCK+  I ++  LF  +R      D+  YS +I   CK   L+ A 
Sbjct: 506 CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAF 565

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     V DVVTYS +I+GL   G +DKA D+F +M     APN++T+ TLI G 
Sbjct: 566 KMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGL 625

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +IN+  +  E+L  M++++  PD+   + +++ L 
Sbjct: 626 CKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLC 661



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING  K+  ++ A+ L  EM+  G  P+V  +NT+  G  + ++VE A  L ++M   G
Sbjct: 236 MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +YT  I+GLCK   + E+  +   +    C+ ++  Y  L+DG C+ G L+ A+
Sbjct: 296 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAV 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       + +TY+ ++H       M++AH +   M +    P+ I + T+I GF
Sbjct: 356 ELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGF 415

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +  +LL +M  +   PD + +S ++D L K
Sbjct: 416 CKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCK 452



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C+  +++GA+ L  +M  +G +P+ + +N +       + +ERA ++   M + G
Sbjct: 341 LVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG 400

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  I G CK G + E+ +L   +    C  D+   S LID LCK+  ++ A 
Sbjct: 401 CPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQ 460

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL           DVV YSI+IH L    ++ +A      M +N   P+V+T+ +++ G 
Sbjct: 461 ELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGL 520

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
            +    +    L  +M+   VMPD    SIV+    K+  +L+S  +F + ER +E 
Sbjct: 521 CKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDN-NLDS--AFKMLERMKEA 574



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 112/197 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK++ I  A  L+  M + G+ PDVV ++ +     + + ++ AFK+ + M+   
Sbjct: 516 VVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK 575

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  I+GLCK G + ++ ++F+ +    C  ++  Y+ LIDGLCK  ++E A 
Sbjct: 576 CVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAA 635

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +     D +TY+ +I+GL N  ++++A  +  +M++    P+ +T+GTL+   
Sbjct: 636 EMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRAL 695

Query: 182 IRINEPSKVIELLHKMK 198
            + N    V +LL +M+
Sbjct: 696 QKTNNLELVEQLLKEME 712



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 105/213 (49%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           +C+  ++E A  +   M+  G  PD + ++T+  G  +  ++  A  L ++M R G   D
Sbjct: 380 FCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPD 439

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
               +  ID LCK   I  + EL R    + C  D+ AYS LI  LCK+ RL  A     
Sbjct: 440 VACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLD 499

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            + +     DVVTY+ ++ GL    +++ A  LF  M    V P+V+T+  +IH F + N
Sbjct: 500 VMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDN 559

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 ++L +MKE   +PD    S +++ L K
Sbjct: 560 NLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +L++ +CK  + E A+ L   M+ KG  P++  +N+L     +  +VERA +L   M + 
Sbjct: 1058 VLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK 1117

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G   +  +Y   I GLCK   + E V L   +    C  DI  ++ +ID +CK+ R++IA
Sbjct: 1118 GCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIA 1177

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
             ELF+ +       ++VTY+ ++HGL    + D+A  L  +M  +   +P++IT+ T+I 
Sbjct: 1178 YELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVID 1237

Query: 180  GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G  +     +  +L  +M    + PD    SIV+  L K
Sbjct: 1238 GLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCK 1276



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
            ++I G C  ++++ AL L+ EM   G   PDV  ++T+   L +  +V+ A +L ++M  
Sbjct: 917  VVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVS 976

Query: 60   DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             G + +  TY+  + GLCK G + E+  L + +    C  +I  Y+ +IDG CK GR++ 
Sbjct: 977  KGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDE 1036

Query: 120  ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            A  L   +  G    +VVTY++++      G+ + A  L   M E    PN+ T+ +L+ 
Sbjct: 1037 AYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD 1096

Query: 180  GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             F + +E  +  +LL  M +K  +P+    + V+  L K
Sbjct: 1097 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 1135



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +++   K+ +++ A  L  +M+SKG  P+VV +++L  GL +  +++ A  L   M R G
Sbjct: 954  IVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 1013

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             + +  TY   IDG CK G I E+  L   +    C+ ++  Y+ L+D  CK G+ E A+
Sbjct: 1014 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAI 1073

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             L   +     V ++ TY+ ++       ++++A  L   M +    PNV+++ T+I G 
Sbjct: 1074 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  + + LL +M   N +PD    + ++D + K 
Sbjct: 1134 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 1171



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C   +   A+  + EM SK   PD V +NT+  GL +  +++ A +L +EM  +G
Sbjct: 202 ILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  +Y   + G CK   +  ++ L   +    C  D+ +Y+ +I+GLCK  +++ A 
Sbjct: 261 FAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEAC 320

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +     +V+TY  ++ G    G +D A +L   M E    PN IT+  ++H F
Sbjct: 321 RVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVF 380

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R N+  +  ++L  M +    PDA   S ++    K
Sbjct: 381 CRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCK 417



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 36/213 (16%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L++G CK++  + A  L  EM  K G  PD++ +NT+  GL +  +V+RA+KLF +M  D
Sbjct: 1199 LVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD 1258

Query: 61   GVAADTRTYTI-----------------------------------FIDGLCKNGYIVES 85
            G+A D  TY+I                                    IDG CK G + ++
Sbjct: 1259 GLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKA 1318

Query: 86   VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +E+ + L       D+  +S  ID L K GRL  A EL  ++ R  LV D VTY+ ++ G
Sbjct: 1319 LEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKG 1378

Query: 146  LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
              +    + A DLF  M +    P+  T+ TL+
Sbjct: 1379 FCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 114/220 (51%), Gaps = 1/220 (0%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G+CK   I+ A +L  EM+  G +P+VV +  L     +  + E A  L + M   G
Sbjct: 1024 IIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG 1083

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +  TY   +D  CK   +  + +L  ++    C  ++ +Y+ +I GLCK+ ++   +
Sbjct: 1084 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 1143

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             L   +     V D+VT++ +I  +    ++D A++LF  ++E+   PN++T+ +L+HG 
Sbjct: 1144 LLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 1203

Query: 182  IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAKNE 220
             +     +   LL +M +++   PD    + V+D L K++
Sbjct: 1204 CKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSK 1243



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L+    + K  + AL +Y   L     P++     L  GL     +  A++L  EM R G
Sbjct: 850  LLQALLRLKRPKDALQVYRNKLC--CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHG 907

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +   + + I GLC    +  ++ELF+ +     C  D+  YS ++D L KSG+++ A
Sbjct: 908  VPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 967

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              L   +       +VVTYS ++HGL   G++D+A  L   M  +  +PN++T+ T+I G
Sbjct: 968  CRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDG 1027

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++    +   LL +M +    P+    ++++D   K
Sbjct: 1028 HCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 1065



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 34/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K  +   A +L+   +      D V ++TL  G     ++  A++LFDEM R G
Sbjct: 132 LLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKG 191

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFR----------------------------TLR 93
           + A    +   + GLC  G   ++V  FR                             +R
Sbjct: 192 LKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIR 251

Query: 94  ILKCELD------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +L+  +D      + +Y+ ++ G CK+ R+E AL L   +       DVV+Y+ +I+GL 
Sbjct: 252 LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLC 311

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              Q+D+A  +   M +    PNVIT+GTL+ GF R+ +    +EL+ KM E+   P+A
Sbjct: 312 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNA 370



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ +CK+  ++ A  +   M      PDVV ++ L  GL +   V++AF +F EM   
Sbjct: 550 IVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGC 609

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A +  TY   IDGLCK   + ++ E+   +R   C  D   Y+CLI+GLC + RLE A
Sbjct: 610 GCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEA 669

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
             +   +     + D +TY  ++  L     ++    L  +ME
Sbjct: 670 WRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G + ++   N L   L + HQ  +A  LF          DT TY+  I G  + G I+ +
Sbjct: 121 GYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPA 180

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ELF  +     +     +  ++ GLC +G+   A+  F  + +     D VTY+ MI+G
Sbjct: 181 YELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSK-TCPPDSVTYNTMING 239

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++D A  L  +M +N  APNV ++ T++HGF + N     + LL +M  +   PD
Sbjct: 240 LSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPD 299

Query: 206 ASIVSIVVDLLAK 218
               + V++ L K
Sbjct: 300 VVSYTTVINGLCK 312



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 36/248 (14%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
            +I+  CK   ++ A  L++ +   G  P++V +N+L  GL +  + ++A  L  EM R  
Sbjct: 1164 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 1223

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI------------ 108
            G + D  TY   IDGLCK+  +  + +LF  +       D   YS +I            
Sbjct: 1224 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283

Query: 109  -----------------------DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                   DG CK+G L+ ALE+   L       DVVT+SI I  
Sbjct: 1284 NNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDW 1343

Query: 146  LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            L   G++ +A +L   M    + P+ +T+ TL+ GF   +     ++L   M++    PD
Sbjct: 1344 LSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPD 1403

Query: 206  ASIVSIVV 213
             +  + +V
Sbjct: 1404 NATYTTLV 1411



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G+CK   ++ AL +   +LSKG  PDVV  +     L +  ++ +A +L + M R G
Sbjct: 1305 LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG 1364

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL---------- 111
            +  DT TY   + G C      ++V+LF  +R   CE D   Y+ L+  L          
Sbjct: 1365 LVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLL 1424

Query: 112  --CKSGRLEIALELFHSLPRGV-----LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
                   ++   +L H L   +     + ADV     ++      G    A  +F  M++
Sbjct: 1425 AEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQ 1484

Query: 165  NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                 NV+ +  ++  ++   +  +   L   M  + V PDA
Sbjct: 1485 R----NVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDA 1522



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 4/177 (2%)

Query: 44  IHQVERAFKLFD-EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           +   + A   FD    ++G   DT T    +  L +     ++++++R    L C  ++ 
Sbjct: 821 VRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNK--LCCSPNMF 878

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            ++ LI GLC++G +  A EL   +PR  +  +V+ ++++I GL +  ++D A +LF +M
Sbjct: 879 TFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEM 938

Query: 163 EEN-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           EE+ +  P+V T+ T++   ++  +      L+  M  K   P+    S ++  L K
Sbjct: 939 EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCK 995



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 105/230 (45%), Gaps = 17/230 (7%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            I+I+  CK + ++ A N+   ML  G  P  + + TL  G  +   +++A ++   +   
Sbjct: 1269 IVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSK 1328

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G   D  T++IFID L K G + ++ EL  T+       D   Y+ L+ G C +   E A
Sbjct: 1329 GSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDA 1388

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGL-----YND--GQMDKA---------HDLFLDMEE 164
            ++LF  + +     D  TY+ ++  L     Y D   ++ K+         H+L   +E 
Sbjct: 1389 VDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEA 1448

Query: 165  N-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  V  +V     ++  F +   P    ++   M ++NV+  ++++ + V
Sbjct: 1449 SIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYV 1498



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           RDG   +       ++ L K     ++ +LFR+    +   D   YS LI G  ++G++ 
Sbjct: 119 RDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKIL 178

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A ELF  + R  L A    +  ++ GL + GQ   A   F +M +    P+ +T+ T+I
Sbjct: 179 PAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTC-PPDSVTYNTMI 237

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
           +G  + +     I LL +M +    P+
Sbjct: 238 NGLSKSDRLDDAIRLLEEMVDNGFAPN 264



 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 25   KGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
            +G+    V+  +  +G++  H Q E+AF L+  M  +GV  D  T+   +   C  G + 
Sbjct: 1480 EGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLD 1539

Query: 84   ESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
             +V+ F ++ R    E  +  +SC+ID L + G +  A +L   +P
Sbjct: 1540 AAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGMP 1585


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 124/226 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C+N  +  A+ L  EM  K + PD+V +NTL  GL +  +++ A  L  EM+  
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 62

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ T T  +DGLCK+G + E++EL   ++    + D+  Y  LI G C +G L+  
Sbjct: 63  GCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRG 122

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    + A+VVTYS ++HGL   GQ  +A+ +   M E+ + P+V+T+  LI G
Sbjct: 123 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDG 182

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +    +  ++LL+ M EK   P     ++++  L K  + +++ 
Sbjct: 183 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAF 228



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 97/185 (52%)

Query: 35  NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           N +  GL     V  A  L  EM R  V+ D  +Y   I+GLCK   + E+V L   +  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
             C  +    + L+DGLCK GR++ A+EL  ++ +    ADVV Y  +I G  N+G +D+
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +LF +M    ++ NV+T+  L+HG  R+ +  +   +L+ M E  + PD    + ++D
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 215 LLAKN 219
            L K+
Sbjct: 182 GLCKD 186



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK K+++ A+ L  EM + G  P+ V   TL  GL +  +++ A +L + M++ G
Sbjct: 39  LINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKG 98

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD   Y   I G C NG +    ELF  +       ++  YSCL+ GLC+ G+ + A 
Sbjct: 99  FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEAN 158

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +++    +  DVVTY+ +I GL  DG+   A DL   M E    P+ +T+  L+ G 
Sbjct: 159 TVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 218

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +        ++L  M EK    D
Sbjct: 219 CKEGLVIDAFKILRMMIEKGKKAD 242



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 37/255 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           +L++G CK   +  A  +   M+ KG K DVV +NTL  GL +  +V+ A KLF+ M   
Sbjct: 213 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 272

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFR---------------------------- 90
            + +  +  T+ + I GLCK G + ++V++ R                            
Sbjct: 273 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 332

Query: 91  -TLRILKCELDIQ------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
             + + K  LD+        YS LIDG CK   L IA  LF  +    L   +  Y+ ++
Sbjct: 333 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 392

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L  +G +++A  LF +M      P++I+F T+I G ++  +   V EL  KM E  + 
Sbjct: 393 ASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR 452

Query: 204 PDASIVSIVVDLLAK 218
           PDA   S +++ L+K
Sbjct: 453 PDALTFSTLINRLSK 467



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 124/254 (48%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C N  ++    L+ EML KGI  +VV ++ L  GL  + Q + A  + + M    
Sbjct: 109 LISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHG 168

Query: 60  ------------DGVAADTR---------------------TYTIFIDGLCKNGYIVESV 86
                       DG+  D R                     TY + + GLCK G ++++ 
Sbjct: 169 IHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAF 228

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL--PRGVLVADVVTYSIMIH 144
           ++ R +     + D+  Y+ L+ GLC  G+++ AL+LF+S+      L  +V T++++I 
Sbjct: 229 KILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIG 288

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL  +G++ KA  +   M +     N++T+  L+ G ++  +  + +EL  ++ +   +P
Sbjct: 289 GLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVP 348

Query: 205 DASIVSIVVDLLAK 218
           ++   SI++D   K
Sbjct: 349 NSFTYSILIDGFCK 362



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G  K  +I+ A+ L+ ++L  G  P+   ++ L  G  ++  +  A  LF EM+  
Sbjct: 320 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 379

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   +  LCK G + ++  LF+ +    CE DI +++ +IDG  K+G  +  
Sbjct: 380 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFV 439

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L  D +T+S +I+ L   G++D+A      M  +   P+ + + +L+ G
Sbjct: 440 KELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKG 499

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN--EIS-LNSLPSF 229
                + +++I LLH+M  K  + D  IVS ++  L  +  E+  +  LP+F
Sbjct: 500 LSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTF 551



 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 56/130 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K  + +    L  +M+  G++PD +  +TL   L ++ +++ A    + M   G
Sbjct: 426 MIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 485

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   + GL   G   E + L   +      LD +  S ++  LC S +    +
Sbjct: 486 FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVM 545

Query: 122 ELFHSLPRGV 131
           EL  +  +G 
Sbjct: 546 ELLPTFFQGT 555


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C+  ++  A +L  EM+S G+ P+VV  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 434 LIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 493

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 494 MDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       DVVT++ +I G    G +D   +LF +M +  +  +
Sbjct: 554 LCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVAD 613

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI+GF +++     +++  +M    V PD  +I +++  L +K E+
Sbjct: 614 AITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 665



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 104/206 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+C +     A  L  EML + I PDVV  + L     +  +   A +L+DEM    
Sbjct: 294 MINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRS 353

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T TY+  IDG CK   +  +  +F       C  DI  ++ LI G C++ R++  +
Sbjct: 354 IIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGI 413

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H +    LVA+ +TY+ +IHG    G ++ A DL  +M  + V PNV+T  TL+ G 
Sbjct: 414 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGL 473

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++  +  DAS
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDIDAS 499



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  +C   ++  AL+ + ++   G  P VV  NTL  GL    ++  A  LF +M + 
Sbjct: 121 ILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKP 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     T+T  ++GLC+ G +VE+V L   +     + +   Y  ++DG+CK G    A
Sbjct: 181 NVV----TFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSA 236

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     ++ +VV Y+ +I GL+ DG+   AH+LF++M+E  + P+++T+  +I+
Sbjct: 237 LNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMIN 296

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S   +LL +M E+ + PD    S +++   K
Sbjct: 297 GFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVK 335



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEA 528

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       D+  ++ LI G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITG 588

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+G ++  LELF  + +  +VAD +TY  +I+G      +D A D+F +M  + V P+
Sbjct: 589 YCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPD 648

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L  ++
Sbjct: 649 TITIRNMLTGLWSKEELERAVAMLEDLQ 676



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    I  AL+L+ +M     KP+VV   TL  GL    +V  A  L D M  DG
Sbjct: 157 LLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDG 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  +  TY   +DG+CK G  V ++ L R +  +     ++  Y+ +IDGL K GR   A
Sbjct: 213 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDA 272

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+VTY+ MI+G    G+   A  L  +M E  + P+V+TF  LI+ 
Sbjct: 273 HNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINA 332

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F++  +  +  EL  +M  ++++P     S ++D   K 
Sbjct: 333 FVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQ 371



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   ALNL  +M     I P+VVI+NT+  GL++  +   A  LF EMQ  
Sbjct: 223 IVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEK 282

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I+G C +G   ++ +L + +   K   D+  +S LI+   K G+   A
Sbjct: 283 EIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEA 342

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPR + +   VTYS MI G     ++D A  +F        +P++ITF TLI 
Sbjct: 343 EELYDEMLPRSI-IPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIA 401

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
           G+ R       I+LLH+M E  ++ + 
Sbjct: 402 GYCRAKRVDDGIKLLHEMTEAGLVANT 428



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 1/241 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K+     A NL+ EM  K I PD+V +N +  G     +   A +L  EM    
Sbjct: 259 IIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERK 318

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T++  I+   K G   E+ EL+  +           YS +IDG CK  RL+ A 
Sbjct: 319 INPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAE 378

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+  P      D++T++ +I G     ++D    L  +M E  +  N IT+ TLIHGF
Sbjct: 379 HMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF 438

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE-EVDE 240
            ++ + +   +LL +M    V P+    + ++D L  N    ++L  F   ++ + ++D 
Sbjct: 439 CQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 498

Query: 241 S 241
           S
Sbjct: 499 S 499



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   +  A+ L   ML  G++P+ + + T+  G+ ++     A  L  +M+   
Sbjct: 188 LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 247

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y   IDGL K+G   ++  LF  ++  +   DI  Y+C+I+G C SGR   A
Sbjct: 248 HIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDA 307

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  DVVT+S +I+    +G+  +A +L+ +M   ++ P+ +T+ ++I G
Sbjct: 308 EQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDG 367

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F + N       + +    K   PD
Sbjct: 368 FCKQNRLDAAEHMFYLTPTKGCSPD 392



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K ++ A++L+  M+     P V+    L   +  + + +    L  +M+   
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLR 111

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  ++TI +   C    +  ++  F  +  L     +  ++ L+ GLC   R+  AL
Sbjct: 112 MPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEAL 171

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH + +     +VVT++ +++GL  +G++ +A  L   M E+ + PN IT+GT++ G 
Sbjct: 172 DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 227

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            ++ +    + LL KM+E  +++P+  I + ++D L K+
Sbjct: 228 CKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKD 266



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 40  GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           G  EI  ++ A  LF  M R         +   +  + + G     + L + + +L+   
Sbjct: 55  GFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPC 114

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           +  +++ L+   C   +L  AL  F  + +      VVT++ ++HGL  + ++ +A DLF
Sbjct: 115 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLF 174

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M      PNV+TF TL++G  R     + + LL +M E  + P+      +VD + K 
Sbjct: 175 HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 230

Query: 220 EISLNSL 226
             ++++L
Sbjct: 231 GDTVSAL 237



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK   ++  L L+ EM  +GI  D + + TL  G  ++  ++ A  +F EM   G
Sbjct: 585 LITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSG 644

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + GL     +  +V +   L++
Sbjct: 645 VYPDTITIRNMLTGLWSKEELERAVAMLEDLQM 677


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 114/203 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK K ++ ALNL+ E+  K + PD V + +L   L +  ++   + LFDEM   
Sbjct: 343 IMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDR 402

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ID LCKNG++  ++ LF  ++      ++  ++ L+DGLCK GRL+ A
Sbjct: 403 GQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNA 462

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE F  L       +V TY++MI+GL  +G +D+A  L   ME+N    + +TF  +I  
Sbjct: 463 LEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRA 522

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
           F   +E  K  +L+ +M  + ++
Sbjct: 523 FFDKDENDKAEKLVREMIARGLL 545



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 125/253 (49%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK+  ++ A +LY+EM+ KGI PDVV ++ L  G   + Q+ RA  L +EM  +
Sbjct: 203 MIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLE 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVE-----------------------------------S 85
            +  D  TYTI +D LCK G + E                                   +
Sbjct: 263 NINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNA 322

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             +F T+  +    D+  YS +I+GLCK  R++ AL LF  + +  +V D VTY+ +I  
Sbjct: 323 KRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDC 382

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++    DLF +M +    P+VIT+  LI    +     + I L +KMK++ + P+
Sbjct: 383 LCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPN 442

Query: 206 ASIVSIVVDLLAK 218
               +I++D L K
Sbjct: 443 VYTFTILLDGLCK 455



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +++ A N+ + M+   +  DVV+++TL  G   +++V  A ++F  M + 
Sbjct: 273 ILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM 332

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y+I I+GLCK   + E++ LF  +       D   Y+ LID LCKSGR+   
Sbjct: 333 GVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYV 392

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +       DV+TY+ +I  L  +G +D+A  LF  M++ A+ PNV TF  L+ G
Sbjct: 393 WDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDG 452

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++      +E    +  K    +    +++++ L K
Sbjct: 453 LCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCK 490



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 116/219 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK  E   A+ L   +    I+P+VVI++ +   L +   V+ A+ L+ EM   
Sbjct: 168 ILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGK 227

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TY+I + G C  G +  +++L   + +     DI  Y+ L+D LCK G+++ A
Sbjct: 228 GISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEA 287

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  +  DVV YS ++ G     +++ A  +F  M +  V P+V  +  +I+G
Sbjct: 288 ENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMING 347

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +I    + + L  ++ +KN++PD    + ++D L K+
Sbjct: 348 LCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKS 386



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   E+  A  ++  M   G+ PDV  ++ +  GL +I +V+ A  LF+E+ +  
Sbjct: 309 LMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKN 368

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TYT  ID LCK+G I    +LF  +       D+  Y+ LID LCK+G L+ A+
Sbjct: 369 MVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAI 428

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  +V T++I++ GL   G++  A + F D+       NV T+  +I+G 
Sbjct: 429 ALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGL 488

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     + + L  +M++   + DA    I++
Sbjct: 489 CKEGLLDEALALQSRMEDNGCISDAVTFEIMI 520



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 107/209 (51%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K    A++LY +M    ++PD    N +        QV  AF    ++ + G   +T T 
Sbjct: 72  KRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITL 131

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
              + GLC  G + E++     +      L   +Y  LI+G+CK G    A+ L   + R
Sbjct: 132 NTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIER 191

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             +  +VV YS++I  L  D  +D+A+DL+ +M    ++P+V+T+  L+ GF  + + ++
Sbjct: 192 WSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNR 251

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            I+LL++M  +N+ PD    +I+VD L K
Sbjct: 252 AIDLLNEMVLENINPDIYTYTILVDALCK 280



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   +++ AL  + ++L++G +   + +  L  G+ +I +   A +L   ++R  
Sbjct: 134 LMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWS 193

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y++ ID LCK+  + E+ +L+  +       D+  YS L+ G C  G+L  A+
Sbjct: 194 IRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAI 253

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +  D+ TY+I++  L  +G++ +A ++   M +  V  +V+ + TL+ G+
Sbjct: 254 DLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGY 313

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +NE +    + + M +  V PD    SI+++ L K
Sbjct: 314 CLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCK 350



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 35/209 (16%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           + A++ ++ M      P     N + I L  + +   A  L+ +M+   V  D  T  I 
Sbjct: 40  DDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNII 99

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+  C  G +V +      +  L  + +    + L+ GLC  G+++ AL  FH       
Sbjct: 100 INCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALR-FHD------ 152

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
                   ++  G    G                     I++G LI+G  +I E    I 
Sbjct: 153 -------KVLAQGFRLSG---------------------ISYGILINGVCKIGETRAAIR 184

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           LL +++  ++ P+  I S+++D L K+ +
Sbjct: 185 LLRRIERWSIRPNVVIYSMIIDRLCKDTL 213


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G CK  ++   + L  +MLS    PD+V  NT+   + + ++V+ A++LF+ +Q  G
Sbjct: 401 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
              +  TY   + GLCK+    ++  L R + R   C  DI  Y+ +IDGLCKS R++ A
Sbjct: 461 CTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 520

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    L  D VTYSI+I  L     MD+A+++   M +N   P  IT+GTLI G
Sbjct: 521 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 580

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +     K +E+L  +  K   PD    SI +D L+K
Sbjct: 581 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK 618



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 120/220 (54%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C+  +++GA+ L  +M  +G +P+ + +N +  GL    +++ A +LF EM+  G
Sbjct: 155 LVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESG 214

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY+  +D L K+G + ++  L   +    C  ++  YS L+ GLCK+G+L+ A
Sbjct: 215 SCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R     ++VTY+ +I G    G++D+A+ L  +M +    PNV+T+  L+  
Sbjct: 275 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F +  +    I L+  M EK  +P+    + ++D+  K +
Sbjct: 335 FCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 374



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 5/215 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L++G CK++  + A  L  EM  K G  PD++ +NT+  GL +  +V+RA+KLF +M  D
Sbjct: 471 LVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD 530

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLE 118
           G+A D  TY+I I  LCK  ++ E+  +   +  LK   D  A  Y  LIDG CK+G L+
Sbjct: 531 GLAPDDVTYSIVISSLCKWRFMDEANNVLELM--LKNGFDPGAITYGTLIDGFCKTGNLD 588

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            ALE+   L       DVVT+SI I  L   G++ +A +L   M    + P+ +T+ TL+
Sbjct: 589 KALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLL 648

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            GF   +     ++L   M++    PD +  + +V
Sbjct: 649 KGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +CK  + E A+ L   M+ KG  P++  +N+L     +  +VERA +L   M + 
Sbjct: 330 VLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK 389

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I GLCK   + E V L   +    C  DI  ++ +ID +CK+ R++IA
Sbjct: 390 GCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIA 449

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
            ELF+ +       ++VTY+ ++HGL    + D+A  L  +M  +   +P++IT+ T+I 
Sbjct: 450 YELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVID 509

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +     +  +L  +M    + PD    SIV+  L K
Sbjct: 510 GLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCK 548



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING  K+  ++ A+ L  EM+  G  P+V  +NT+  G  + ++VE A  L ++M   G
Sbjct: 50  MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +YT  I+GLCK   + E+  +   +    C+ ++  Y  L+DG C+ G L+ A+
Sbjct: 110 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAV 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHG 180
           EL   +       + +TY+ ++HGL +  ++D A  LF +MEE+ +  P+V T+ T++  
Sbjct: 170 ELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDS 229

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++  +      L+  M  K   P+    S ++  L K
Sbjct: 230 LVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCK 267



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G C  ++++ AL L+ EM   G   PDV  ++T+   L +  +V+ A +L + M   
Sbjct: 190 IMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSK 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY+  + GLCK G + E+  L + +    C  +I  Y+ +IDG CK GR++ A
Sbjct: 250 GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +  G    +VVTY++++      G+ + A  L   M E    PN+ T+ +L+  
Sbjct: 310 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F + +E  +  +LL  M +K  +P+    + V+  L K
Sbjct: 370 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 407



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K+ +++ A  L   M+SKG  P+VV +++L  GL +  +++ A  L   M R G
Sbjct: 226 IVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   IDG CK G I E+  L   +    C+ ++  Y+ L+D  CK G+ E A+
Sbjct: 286 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAI 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V ++ TY+ ++       ++++A  L   M +    PNV+++ T+I G 
Sbjct: 346 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + LL +M   N +PD    + ++D + K 
Sbjct: 406 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 443



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C   +   A+  + EM SK   PD V +NT+  GL +  +++ A +L +EM  +G
Sbjct: 16  ILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  +Y   + G CK   +  ++ L   + +  C  D+ +Y+ +I+GLCK  +++ A 
Sbjct: 75  FAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEAC 134

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +     +V+TY  ++ G    G +D A +L   M E    PN IT+  ++HG 
Sbjct: 135 RVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGL 194

Query: 182 IRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKN 219
               +    ++L  +M+E  +  PD    S +VD L K+
Sbjct: 195 CSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKS 233



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 114/220 (51%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK   I+ A +L  EM+  G +P+VV +  L     +  + E A  L + M   G
Sbjct: 296 IIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +D  CK   +  + +L  ++    C  ++ +Y+ +I GLCK+ ++   +
Sbjct: 356 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V D+VT++ +I  +    ++D A++LF  ++E+   PN++T+ +L+HG 
Sbjct: 416 LLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 475

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAKNE 220
            +     +   LL +M +++   PD    + V+D L K++
Sbjct: 476 CKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSK 515



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 1/185 (0%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  KG+K    +H ++  GL +  Q   A   F EM +     D+ TY   I+GL K+  
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 59

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + +++ L   +       ++ +Y+ ++ G CK+ R+E AL L   +       DVV+Y+ 
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I+GL    Q+D+A  +   M +    PNVIT+GTL+ GF R+ +    +EL+ KM E+ 
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 202 VMPDA 206
             P+A
Sbjct: 180 YRPNA 184



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK + ++ A N+   ML  G  P  + + TL  G  +   +++A ++   +   
Sbjct: 541 IVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSK 600

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T++IFID L K G + ++ EL  T+       D   Y+ L+ G C + R E A
Sbjct: 601 GSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDA 660

Query: 121 LELFHSLPRGVLVADVVTYSIMI 143
           ++LF  + +     D  TY+ ++
Sbjct: 661 VDLFEVMRQCGCEPDNATYTTLV 683


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 112/203 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K+++ A+NL+ EM  K I PDVV +N+L  GL +  ++  A KL DEM   
Sbjct: 341 IMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDR 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   +D LCKN  + +++ L   ++    + D+  Y+ LIDGLCK GRL+ A
Sbjct: 401 GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L        V TY++MI G  ++   DKA  L   ME+N   PN  T+  +I  
Sbjct: 461 QNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILS 520

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               +E     +LL +M  + ++
Sbjct: 521 LFEKDENDMAEKLLREMIARGLL 543



 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 126/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK K +  A +LYSEM+SKGI PDVV ++ L  G   + ++  A  LF++M  + 
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEE 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T++I +DG CK G + E+  +   +     + D+  Y  L+DG C   ++  A 
Sbjct: 262 INPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAK 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++ +G + A+V +Y+IMI+G     ++D+A +LF +M    + P+V+T+ +LI G 
Sbjct: 322 SIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGL 381

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  + S  ++L+ +M ++ V  D    + ++D L KN 
Sbjct: 382 CKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNH 420



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 129/256 (50%), Gaps = 36/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK   ++ A N+ + M+ +GIKPDVV + +L  G   + QV +A  +F+ M + 
Sbjct: 271 ILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQG 330

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+ ++Y I I+G CK   + E++ LF+ +       D+  Y+ LIDGLCKSG++  A
Sbjct: 331 GVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYA 390

Query: 121 LELFHSL-PRGV----------------------------------LVADVVTYSIMIHG 145
           L+L   +  RGV                                  +  D+ TY+I+I G
Sbjct: 391 LKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDG 450

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++  A ++F D+        V T+  +I GF   +   K + LL KM++   +P+
Sbjct: 451 LCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPN 510

Query: 206 ASIVSIVV-DLLAKNE 220
           A    I++  L  K+E
Sbjct: 511 AKTYEIIILSLFEKDE 526



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 119/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   AL L   +  K ++P+VV++NT+   + ++  V  AF L+ EM   G
Sbjct: 167 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 226

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I G C  G + +++ LF  +   +   D+  +S L+DG CK GR++ A 
Sbjct: 227 ISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAK 286

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DVVTY  ++ G     Q++KA  +F  M +  V  NV ++  +I+GF
Sbjct: 287 NVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGF 346

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I +  + + L  +M  KN++PD    + ++D L K+
Sbjct: 347 CKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKS 384



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 104/206 (50%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           + A++L+ EM   GI  D+V  N L     ++     +F +F  + + G   +  T T  
Sbjct: 73  QTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTL 132

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I GLC  G I +++     +  L   L+   Y  LI+GLCK G+   AL+L   +   ++
Sbjct: 133 IKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLV 192

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             +VV Y+ +I  +     +++A DL+ +M    ++P+V+T+  LI GF  + + +  I 
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           L +KM  + + PD    SI+VD   K
Sbjct: 253 LFNKMISEEINPDVYTFSILVDGFCK 278



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+ + ++++ G   + V + TL  GL ++ Q   A +L   +    
Sbjct: 132 LIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKL 191

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   ID +CK   + E+ +L+  +       D+  YS LI G C  G+L  A+
Sbjct: 192 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAI 251

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  DV T+SI++ G   +G++ +A ++   M +  + P+V+T+ +L+ G+
Sbjct: 252 GLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGY 311

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + +K   + + M +  V  +    +I+++   K
Sbjct: 312 CLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCK 348



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 104/214 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN + +      + ++++ +L KG +P+ +   TL  GL    Q+ +A    D++   
Sbjct: 96  ILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVAL 155

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   I+GLCK G    +++L R +     + ++  Y+ +ID +CK   +  A
Sbjct: 156 GFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 215

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  DVVTYS +I G    G+++ A  LF  M    + P+V TF  L+ G
Sbjct: 216 FDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDG 275

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +     +   +L  M ++ + PD      ++D
Sbjct: 276 FCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMD 309


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 20/256 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K + +  A+ L  EML  G  P VV + TL  GL    + + A ++ D M   G
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
            A +  TY+  +DGLCK G + E++  F  + R       + AYS LIDGLCK+GR++ A
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEA 738

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + R   + DVVT+SI+I+GL + G++D   +LF  M E     ++  +  +I+ 
Sbjct: 739 YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINA 798

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-------------------EI 221
           +    E S    LL +MK   +  +     IV+  L  N                   EI
Sbjct: 799 YCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEI 858

Query: 222 SLNSLPSFTVHERQEE 237
           S N+L +  V  R+ E
Sbjct: 859 SYNTLITSLVASRRSE 874



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 115/237 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K+  +  AL L   M+  G+ PDV+  N++  GL +  ++  A  +F      G
Sbjct: 479 LVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 538

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  IDGL K   + E+++L   +  L C  +   YS ++DGL K GR+E A+
Sbjct: 539 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 598

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     + D VTY+ +I G +   ++ +A  L  +M E    P+V+T+ TL HG 
Sbjct: 599 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 658

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
            R     + +E+L  M  +   P+A   S +VD L K      +L  F    R E V
Sbjct: 659 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV 715



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K   +E A+ +  +M   G  PD V +NTL  G F+  ++  A  L  EM   G
Sbjct: 584 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG 643

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT    GLC++G   E+VE+   +    C  +   YS ++DGLCK+GR+  AL
Sbjct: 644 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEAL 703

Query: 122 ELFHSLPRGVLVAD-VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             F  + R  +VA  V+ YS +I GL   G++D+A++    M      P+V+TF  LI+G
Sbjct: 704 GYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILING 763

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                     +EL   M E+    D
Sbjct: 764 LCDAGRIDTGLELFCGMAERGCKAD 788



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 102/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C++ E++    L  EM  +G  P+ V +NTL   L    + + AF L + M  +G
Sbjct: 42  VIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANG 101

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+ + I GLCK G I  +  +   +       D++ ++ L+  LC+ GR++ A 
Sbjct: 102 CPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAW 161

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +       D VTY+ M+ GLY  G+++ A  +   + E+  +P V TF   + G 
Sbjct: 162 FFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGL 221

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +   E    M +  V P+      ++D L K
Sbjct: 222 SKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCK 258



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C    I+  L L+  M  +G K D+  +N +        +   A+ L +EM+  
Sbjct: 759 ILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTH 818

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +T T+ I I  LC N  I E+V  F ++    C  +I +Y+ LI  L  S R E A
Sbjct: 819 GIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIP-EDCRDEI-SYNTLITSLVASRRSEQA 876

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL  ++       D   Y  ++ GL+  G  + A  L  +M     +P++ T+  +I G
Sbjct: 877 LELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISG 936

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +     +   +M  KN+ PDA + S ++D   K +
Sbjct: 937 LSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKAD 976



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 112/267 (41%), Gaps = 45/267 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK  EIE A  +  EM+ +G  PDV IH  L   L E+ +V+ A+  F ++   
Sbjct: 111 LIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLI 170

Query: 61  GVAADTRTY-----------------------------------TIFIDGLCKNGYIVES 85
           G   D  TY                                   TI +DGL K G +  +
Sbjct: 171 GFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGA 230

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            E F ++       +   Y  LIDGLCK+G+L+IAL L          A +  +S ++HG
Sbjct: 231 YEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQ---AGMFAFSSLLHG 287

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++++A  L   M      PNV+ F +L++G  +     +  EL   MKE     D
Sbjct: 288 LCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSAD 344

Query: 206 ASIVSIVVDLLAKNEISLNSLPSFTVH 232
                I  ++L K    L  +P    H
Sbjct: 345 V----ITYNILLKGLCKLRRIPEAYRH 367



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 102/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   +  A   + + +  G +P VV ++T+  GL   ++V++  KL +EM   
Sbjct: 6   VLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGR 65

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A +  TY   ++ L   G   E+  L   +    C  ++  +  +I GLCK G +E A
Sbjct: 66  GCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAA 125

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +     V DV  +++++H L   G++D+A   F  +      P+ +T+ T++ G
Sbjct: 126 FRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDG 185

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +         +L  + E    P     +I VD L+K
Sbjct: 186 LYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSK 223



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 36/252 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C+   +E A+ L   M      P+VV  N+L  GL +  +V+ AF+LFD M+  G
Sbjct: 284 LLHGLCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESG 340

Query: 62  VAADTRTYTIFIDGLCKNGYIVES---VELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
            +AD  TY I + GLCK   I E+   VEL R  R   C  ++  +S LI GLC +GR+ 
Sbjct: 341 CSADVITYNILLKGLCKLRRIPEAYRHVELMR--RTEGCSPNVVTFSTLIQGLCNAGRVN 398

Query: 119 IALELFHSLPRGVLVADV----VTYSIMIHGLYNDGQMDKAHDLFLDMEE---------- 164
            A E++    R V V  +     TY+ ++ GL   G   +    F  M E          
Sbjct: 399 QAWEVYE---RMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWP 455

Query: 165 -----------NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                          P ++T+ TL+ G  +       + LL  M E  + PD    + V+
Sbjct: 456 IHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVL 515

Query: 214 DLLAKNEISLNS 225
           D L K +  L++
Sbjct: 516 DGLCKEQRILDA 527



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 91/177 (51%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           +P +V +NTL  GL +   V  A  L + M   G++ D  T+   +DGLCK   I+++  
Sbjct: 470 RPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 529

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +F+      C  ++  YS LIDGL K  +++ AL+L   +      A+ VTYS ++ GL 
Sbjct: 530 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 589

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
             G+M+ A  +   M +    P+ +T+ TLI GF +     + + LL +M E    P
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHP 646



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK   +  AL  + +M   + + P V+ ++ L  GL +  +++ A++  + M R 
Sbjct: 689 IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRA 748

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T++I I+GLC  G I   +ELF  +    C+ DI AY+ +I+  C  G    A
Sbjct: 749 GRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAA 808

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  + VT+ I+I  L  + ++D+A   F  + E+    + I++ TLI  
Sbjct: 809 YALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED--CRDEISYNTLITS 866

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +      + +ELL  M      PDA     V+D L K
Sbjct: 867 LVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFK 904



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 27/243 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM- 57
           IL+ G CK + I  A   + E++  ++G  P+VV  +TL  GL    +V +A+++++ M 
Sbjct: 350 ILLKGLCKLRRIPEAYR-HVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMV 408

Query: 58  QRDGVAADTRTYTIFIDGLCKNG----------------------YIVESVELFRTLRIL 95
             +G++ +  TY   ++GLCK G                      + + S E+   L + 
Sbjct: 409 AVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEV-DFLMVQ 467

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            C   +  Y+ L+ GL KSG +  AL L   +    L  DV+T++ ++ GL  + ++  A
Sbjct: 468 VCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDA 527

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           H++F    E    PNV+T+ TLI G  ++ +  + ++LL KM E     +    S VVD 
Sbjct: 528 HNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDG 587

Query: 216 LAK 218
           L K
Sbjct: 588 LLK 590



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 36/236 (15%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH--------------------------- 34
            +IN YC   E   A  L  EM + GI  + V H                           
Sbjct: 795  MINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDC 854

Query: 35   ------NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
                  NTL   L    + E+A +L   M  DG + D   Y   +DGL K G    + +L
Sbjct: 855  RDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKL 914

Query: 89   FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
             + +R      D++ Y+ +I GL K+ +L +A + F  + R  L  D + YS +I     
Sbjct: 915  LQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFC- 973

Query: 149  DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              + DK  D +  +  + + P +  + T++    +     K +E++ +MK KN  P
Sbjct: 974  --KADKVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEP 1027



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI     ++  E AL L   M++ G  PD   + T+  GLF+    E A KL  EM+  G
Sbjct: 863  LITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRG 922

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             + D RTYTI I GL K   +  + + F  +     + D   YS LID  CK+ +++ A 
Sbjct: 923  HSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAW 982

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L  S     +   +  YS M+  L  +   DKA ++  +M+     P +  + +L   +
Sbjct: 983  KLLRS---SGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAY 1039

Query: 182  I---RINEPSKVIELLH 195
            +   R++E  K++  L 
Sbjct: 1040 VAEGRVDEAVKLVNDLQ 1056



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%)

Query: 31  VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
           +V +N L  GL +  +V  AF  F +  + G      TY+  IDGLC++  + +  +L  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            +    C  +   Y+ L++ L   GR + A  L   +       +++T+ ++I GL  +G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           +++ A  +  +M +    P+V     L+H    +    +      ++      PDA   +
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYN 180

Query: 211 IVVDLLAK 218
            +VD L K
Sbjct: 181 TMVDGLYK 188


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 124/228 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK + IE A+ L  E L KG+ PD+V   T+  GL    +   A +LF  +   G
Sbjct: 243 LMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + +DGLCK+G + E+  LF+ ++    + ++  Y+ LID LCK G+++   
Sbjct: 303 HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGK 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  L    L  +V TY+ ++  L  +G + +AH LF  MEE+   P+   +  +I GF
Sbjct: 363 ELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGF 422

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           ++  +PS   +L+ +M  +    DA+  +++ D    +  +L +L  F
Sbjct: 423 LQHKDPSMARQLVEEMVNRGFSADAATRALLNDFPTNDIPALKTLIGF 470



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C   +++  + LY +ML +G++P+V  +N +   L +  +   A     +M++ G
Sbjct: 138 LLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVG 197

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  IDG C  G + E+  +F  +    C  ++  Y+ L++G CK  R+E A+
Sbjct: 198 CVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAV 257

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L     R  LV D+VT++ +I GL   G+   A  LF  +  +   PN++T+G L+ G 
Sbjct: 258 QLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGL 317

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   L  +M+   V P+  I +I++D L K
Sbjct: 318 CKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCK 354



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 103/206 (50%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E  + L  E+   GI+ D+   + L      +H+V+    +  ++ + G+     T+T  
Sbjct: 79  ETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTL 138

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           ++GLC  G + + + L+  + +   + ++  Y+ +I+ L KSG+   AL     + +   
Sbjct: 139 LNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGC 198

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           V +VV YS +I G    GQMD+A  +F  M      PNV T+ +L++G+ +I    + ++
Sbjct: 199 VPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQ 258

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           LL +   K ++PD    + ++  L +
Sbjct: 259 LLDETLRKGLVPDIVTFTTIISGLCR 284



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 74/142 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK+  +E A  L+ EM    +KP++VI+  L   L +  +++   +LF  +  +
Sbjct: 312 VLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDE 371

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYT  +  LCK G I+E+ +LFR +    C  D  AY+ +I G  +     +A
Sbjct: 372 GLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMA 431

Query: 121 LELFHSLPRGVLVADVVTYSIM 142
            +L   +      AD  T +++
Sbjct: 432 RQLVEEMVNRGFSADAATRALL 453



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K+ + AL  +  ML +   P +V  + LF  +  +   E    L  E++  G+  D  + 
Sbjct: 41  KDKDDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSL 100

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           +I I+  C    +   + +   +  L  E  I  ++ L++GLC  G+++  + L+  +  
Sbjct: 101 SILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLV 160

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINE 186
             L  +V TY+++I+ L   G+ ++A      ME+    PNV+ + TLI G+    +++E
Sbjct: 161 RGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDE 220

Query: 187 PSKVIELLHKMKEKNVMPD 205
              V +L   M  K   P+
Sbjct: 221 ARSVFDL---MVSKGCTPN 236



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 74/146 (50%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           ++     + + G+    V L + +  L  E DI + S LI+  C   R++  L +   + 
Sbjct: 65  FSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKIL 124

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           +  L   +VT++ +++GL  +G+MD+   L+ DM    + PNV T+  +I+   +  + +
Sbjct: 125 KLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKAN 184

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVD 214
           + +  L +M++   +P+    S ++D
Sbjct: 185 EALGFLKQMEKVGCVPNVVNYSTLID 210


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 124/223 (55%), Gaps = 11/223 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG-----------LFEIHQVERA 50
           +I+G+CK+  +E A +++  M+SKG  PD++  NTL  G             ++  V  A
Sbjct: 191 MIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVA 250

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
             LF EM  +GV+ D  T    + GLC+NG + +++E+F+  +  K +LD    + +I+G
Sbjct: 251 QDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIING 310

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +CK  +++ A +LF+SLP   +  DVVTY+I+I     +G   +A D++L+M    + P+
Sbjct: 311 MCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPS 370

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +T+ +++ GF + N   +  +++  M  +   PD    S ++
Sbjct: 371 TVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLI 413



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 36/256 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+   +  A +L+ EM+S G+ PD+V  NTL  GL E  ++E+A ++F   Q+  
Sbjct: 237 LIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSK 296

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI------------- 108
           +  DT T  I I+G+CK   + E+ +LF +L +   E D+  Y+ LI             
Sbjct: 297 MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAE 356

Query: 109 ----------------------DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                 DG CK  RLE A ++  S+       DVVT+S +I G 
Sbjct: 357 DIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGY 416

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D   +LF +M +  +  + IT+  LIHGF ++ + +   ++  +M    V PD 
Sbjct: 417 CKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDT 476

Query: 207 -SIVSIVVDLLAKNEI 221
            +  S++  L  K E+
Sbjct: 477 ITFRSMLAGLCTKAEL 492



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 114/200 (57%), Gaps = 2/200 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEMQR 59
           I+ING CK  +++ A +L++ +   G++ DVV +N L IG+F +     RA  ++ EM  
Sbjct: 306 IIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNIL-IGVFVKEGNFLRAEDIYLEMLC 364

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+   T TY   +DG CK   + E+ ++  ++    C  D+  +S LI G CK+GR++ 
Sbjct: 365 KGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDD 424

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            LELF  + +  LVAD +TY+ +IHG    G ++ A D+F +M  + V P+ ITF +++ 
Sbjct: 425 GLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLA 484

Query: 180 GFIRINEPSKVIELLHKMKE 199
           G     E  K + +L  +++
Sbjct: 485 GLCTKAELQKGLTMLEDLQK 504



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+  G   +VV   TL  GL    +V +A  L D M  +G   D  TY   ++G+CK G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
            V ++ + R +   + + ++  YS ++D LCK G    A  +F  +    +  +V+TY+ 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           MI G  + G+   A  L  DM E  + P+V+TF  LI+ F++  + S   EL  +M  +N
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 202 VMPDASIVSIVVDLLAK 218
           + P     S ++D   K
Sbjct: 181 IFPTTITYSSMIDGFCK 197



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 105/213 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C+   +  AL L   M+ +G +PD V + T+  G+ ++     A  +  +M    
Sbjct: 16  LMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQ 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+   Y+  +D LCK+G  +++  +F  +       ++  Y+C+IDG C  G+   A 
Sbjct: 76  IKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAE 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  DVVT+S +I+    +G++  A +L+ +M    + P  IT+ ++I GF
Sbjct: 136 QLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGF 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + +       +   M  K   PD   ++ ++D
Sbjct: 196 CKHSRLEDAKHMFDLMVSKGCSPDIITLNTLID 228



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN + K  ++ GA  LY EML + I P  + ++++  G  +  ++E A  +FD M   G
Sbjct: 156 LINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKG 215

Query: 62  VAADTRTYTIFIDGLCKN-----------GYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            + D  T    IDG C+            G +  + +LF+ +       DI   + L+ G
Sbjct: 216 CSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAG 275

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LC++G+LE ALE+F    +  +  D  T +I+I+G+    ++D+A DLF  +  N V  +
Sbjct: 276 LCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETD 335

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+  LI  F++     +  ++  +M  K ++P     + +VD   K
Sbjct: 336 VVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCK 383



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 11/246 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  +   ALN+  +M    IK +VVI++ +   L +     +A  +F EM   G
Sbjct: 51  IVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG C  G   ++ +L R +     + D+  +S LI+   K G++  A 
Sbjct: 111 IFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAE 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT----- 176
           EL+  + R  +    +TYS MI G     +++ A  +F  M     +P++IT  T     
Sbjct: 171 ELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGC 230

Query: 177 ------LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
                 LIHGF ++   +   +L  +M    V PD    + ++  L +N     +L  F 
Sbjct: 231 CRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFK 290

Query: 231 VHERQE 236
           V ++ +
Sbjct: 291 VFQKSK 296



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  + K      A ++Y EML KGI P  V +N++  G  + +++E A ++ D M  +
Sbjct: 341 ILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSE 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  T++  I G CK G + + +ELF  +       D   Y+ LI G CK G L  A
Sbjct: 401 GCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            ++F  +    +  D +T+  M+ GL    ++ K   +  D++++
Sbjct: 461 QDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQKS 505



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
           A+VVT++ +++GL  +G++ +A  L   M E    P+ +T+GT+++G  ++ +    + +
Sbjct: 8   ANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNM 67

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
           L KM E  +  +  I S +VD L K+   + +   FT +HE+
Sbjct: 68  LRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEK 109


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 119/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C N ++  A  L  +M++  +KP+++ HN L  G  +   V++A +LFD+M + G
Sbjct: 277 LINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY I ID  CK+  + ++  L+R +       D+  Y+CLI GLC+ G LE A 
Sbjct: 337 ITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAAR 396

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L AD++TY+I+I  L N G+M KA  L  +M    + P+ +T+ T+I G+
Sbjct: 397 NLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGY 456

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +       + L  +M++   + + +  ++++    K +
Sbjct: 457 CKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKD 495



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+CKNK ++ A  L+ +M  +GI P+V  +N L     +   +E AF L+  M   G
Sbjct: 312 LLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKG 371

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I GLC+ G +  +  L   +     + D+  Y+ LID LC  G ++ AL
Sbjct: 372 VCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKAL 431

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  L    +TY+ MI G   +G +  A +L   ME+     NV T+  LI GF
Sbjct: 432 RLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGF 491

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + ++      LL++M EK ++P+     IV +
Sbjct: 492 CKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTE 524



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 126/226 (55%), Gaps = 11/226 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K  EI     +Y EM+ + I+P ++  N +  GL ++ ++ +A  + ++M+  G
Sbjct: 134 LMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRG 193

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-------CELDIQAYSCLIDGLCKS 114
           V+A+  TY   IDG CK G I +   +++   ILK       C  ++  ++ LIDG CK 
Sbjct: 194 VSANVITYNTLIDGYCKMGKIGK---MYKADAILKEMRADGICPNEV-TFNILIDGFCKD 249

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
             +  A+++F  + R  +  +VVTY+ +I+GL N+G++++A  L   M  + + PN+IT 
Sbjct: 250 KNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITH 309

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             L++GF +     +  EL   M ++ + P+ +  +I++D   K+E
Sbjct: 310 NALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDE 355



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK---LFDEM 57
           I+ING CK  ++  A ++  +M  +G+  +V+ +NTL  G  ++ ++ + +K   +  EM
Sbjct: 168 IVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEM 227

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           + DG+  +  T+ I IDG CK+  +  ++++F  +     + ++  Y+ LI+GLC +G++
Sbjct: 228 RADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKV 287

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A  L   +    L  +++T++ +++G   +  + +A +LF DM +  + PNV T+  L
Sbjct: 288 NEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNIL 347

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I  + +         L   M  K V PD S  + ++  L +
Sbjct: 348 IDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCR 388



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 78/149 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+  ++E A NL SEM +K +K D++ +N L   L    ++++A +L DEM R G
Sbjct: 382 LIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG 441

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   IDG CK G +  ++ L   +  +    ++  Y+ LI G CK  +LE A 
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDAN 501

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            L + +    L+ + +TY I+   +   G
Sbjct: 502 GLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           D   A++    I +    KN       E F+       +L + + + L+ GL K G +  
Sbjct: 87  DSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGD 146

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
              ++  + R  +   +++++I+I+GL   G+++KA D+  DM+   V+ NVIT+ TLI 
Sbjct: 147 MEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLID 206

Query: 180 GFIRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           G+ ++ +  K+ +   +L +M+   + P+    +I++D   K++    ++  F    RQ
Sbjct: 207 GYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQ 265



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  C   E++ AL L  EM  KG+KP  + +NT+  G  +   +  A  L  +M++ 
Sbjct: 416 ILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKV 475

Query: 61  GVAADTRTYTIFIDGLCK 78
           G  A+  TY + I G CK
Sbjct: 476 GRLANVATYNVLIKGFCK 493



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK   +  ALNL S+M   G   +V  +N L  G  +  ++E A  L +EM   G
Sbjct: 452 MIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKG 511

Query: 62  VAADTRTYTIFIDGLCKNGYI 82
           +  +  TY I  + + + G++
Sbjct: 512 LIPNRMTYEIVTEEMMEKGFV 532


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 121/216 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ EML KGIKP  +++N +  GLFE  +   A   F EM   G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TY I + GL KN    E++ LF+ LR +  +++I   + +I G+ ++ R+E A 
Sbjct: 635 IAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAK 694

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+ R  LV  VVTYSIMI  L  +G +++A D+F  M+     P+      ++   
Sbjct: 695 DLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVREL 754

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 755 LKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFS 790



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 115/216 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KPDVV + T+   L  I +++ A + F++M   
Sbjct: 399 VLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D   Y   I G C +G ++++ EL   +      LDI  +S +I+ LCK GR+  A
Sbjct: 459 GVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA 518

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L    V YS+++ G    G+M+KA  +F  M    + PN + +GTL++G
Sbjct: 519 QNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNG 578

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +I    + + L  +M +K + P   + +I++D L
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 110/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A     +M++KG+ P+   +N L  G     Q + A ++F EM+R  
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T ++ +  LCK G I E+ ++F T+ +     ++ +Y+ +++G    G L    
Sbjct: 320 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMT 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  D+ T++++I    N G +DKA  +F +M ++ V P+V+T+ T+I   
Sbjct: 380 DLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            RI +    +E  ++M ++ V PD
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPD 463



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L+ EM+ +GI PD V ++++   L +   +++A     +M   G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G    G   E+V +F+ +R      D+   S L+  LCK G+++ A 
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 344

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++       +V +Y+IM++G    G +    DLF  M  + +AP++ TF  LI  +
Sbjct: 345 DVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 404

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K + + ++M++  V PD      V+  L +
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++   +    E AL  + ++L  G++ +++I N L  G  E  + + A   L      
Sbjct: 116 ILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPE 175

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y+I +  LC  G   ++ +L R +      C  D+ AYS +IDG  K G +
Sbjct: 176 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDV 235

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LF  + +  +  D VTYS ++H L     MDKA      M    V PN  T+  L
Sbjct: 236 NKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNL 295

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+G+    +  + + +  +M+  +++PD   +S+++  L K
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 102/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY    + + A+ ++ EM    I PDVV  + L   L +  +++ A  +FD M   G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +YTI ++G    G +V+  +LF  +       DI  ++ LI      G L+ A+
Sbjct: 355 QNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 414

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +    +  DVVTY  +I  L   G+MD A + F  M +  VAP+   +  LI GF
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K  EL+ ++    +  D    S +++ L K
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 101/201 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C +  +  A  L SE+++ G+  D+V  +++   L ++ +V  A  +FD     G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y++ +DG C  G + +++ +F  +     E +   Y  L++G CK GR++  L
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +    + Y+I+I GL+  G+   A   F +M E+ +A N  T+  ++ G 
Sbjct: 590 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGL 649

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +     + I L  +++  NV
Sbjct: 650 FKNRCFDEAIFLFKELRAMNV 670



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G+C+ K  + AL+ L       G  PDV  ++ L   L +  +  +A  L   M   
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 61  GV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   + D   Y+  IDG  K G + ++ +LF+ +       D   YS ++  LCK+  ++
Sbjct: 212 GAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMD 271

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++ +  TY+ +I+G  + GQ  +A  +F +M  +++ P+V+T   L+
Sbjct: 272 KAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  +  ++   M  K   P+    +I+++
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLN 367



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 56/224 (25%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELF-------RTL 92
           E A  L DE+QR G     R    F+  L        C++G  + +V LF       +  
Sbjct: 46  EEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGP 104

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF---------------------------- 124
           R+L        Y+ L+D   ++ R E+AL  F                            
Sbjct: 105 RVL--SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRT 162

Query: 125 --------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV--APNVITF 174
                   H  P    V DV +YSI++  L + G+  +A DL   M E     +P+V+ +
Sbjct: 163 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAY 222

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+I GF +  + +K  +L  +M ++ + PD    S VV  L K
Sbjct: 223 STVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCK 266


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YC+ K ++  + L  E+  +G+  +   +NTL  G  E+  +  A  LF EM   G
Sbjct: 438 IIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG 497

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT T  I + G C+N  + E++ELF  +++ K +LD  AY+ +I G+CK  +++ A 
Sbjct: 498 VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SLP   +  DV TY++MI G      +  A+ LF  M++N   P+  T+ TLI G 
Sbjct: 558 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 617

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  E  K IEL+ +M+      DA  + +  +++ +
Sbjct: 618 LKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICR 654



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-----------FEIHQVER 49
           ILI  +C   ++  +L+ + ++   G +PDVV  NTL  GL              + VE 
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 50  AF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            F     LFD+M   G+     T+   I+GLC  G ++E+  L   +      +D+  Y 
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            +++G+CK G  + AL L   +    +  DVV YS +I  L  DG    A  LF +M E 
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            +APNV T+  +I GF      S    LL  M E+ + PD
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C       A  L  +M+ + I PDV+  N L     +  ++  A KL DEM    
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I G CK+    ++  +F     L    D+  ++ +ID  C++ R++  +
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFD----LMASPDVVTFNTIIDVYCRAKRVDEGM 452

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  LVA+  TY+ +IHG      ++ A DLF +M  + V P+ IT   L++GF
Sbjct: 453 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 512

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
               +  + +EL   ++   +  D    +I++  + K    + + +   S  +H  + +V
Sbjct: 513 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 572

Query: 239 DESNV 243
              NV
Sbjct: 573 QTYNV 577



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    +  A  L ++M+ KG+  DVV + T+  G+ ++   + A  L  +M+   
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  ID LCK+G+  ++  LF  +       ++  Y+C+IDG C  GR   A 
Sbjct: 292 IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 351

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  DV+T++ +I     +G++ +A  L  +M    + P+ +T+ ++I+GF
Sbjct: 352 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N       +   M      PD    + ++D+  +
Sbjct: 412 CKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCR 444



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 94/192 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ L+ +M+  G+ P V+  NTL  GL    +V  A  L ++M   G+  D  TY   ++
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G+CK G    ++ L   +     + D+  YS +ID LCK G    A  LF  +    +  
Sbjct: 270 GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 329

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +V TY+ MI G  + G+   A  L  DM E  + P+V+TF  LI   ++  +  +  +L 
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389

Query: 195 HKMKEKNVMPDA 206
            +M  + + PD 
Sbjct: 390 DEMLHRCIFPDT 401



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K  ++  A  L  EML + I PD V +N++  G  + ++ + A  +FD M    
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM---- 427

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID------------ 109
            + D  T+   ID  C+   + E ++L R +       +   Y+ LI             
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487

Query: 110 -----------------------GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                  G C++ +LE ALELF  +    +  D V Y+I+IHG+
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 547

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A DLF  +  + V P+V T+  +I GF   +  S    L HKMK+    PD 
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 607

Query: 207 SIVSIVV 213
           S  + ++
Sbjct: 608 STYNTLI 614



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++LY +M  + I  ++   N L     + H++  +   F ++ + G   D  T+   + 
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLH 184

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC    I E++ LF              Y      + ++G LE A+ LF  +    L  
Sbjct: 185 GLCLEDRISEALALF-------------GY------MVETGFLE-AVALFDQMVEIGLTP 224

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V+T++ +I+GL  +G++ +A  L   M    +  +V+T+GT+++G  ++ +    + LL
Sbjct: 225 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 284

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            KM+E ++ PD  I S ++D L K+
Sbjct: 285 SKMEETHIKPDVVIYSAIIDRLCKD 309



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+C+N+++E AL L+  +    I  D V +N +  G+ +  +V+ A+ LF  +   
Sbjct: 507 ILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH 566

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D +TY + I G C    I ++  LF  ++    E D   Y+ LI G  K+G ++ +
Sbjct: 567 GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626

Query: 121 LELFHSLPRGVLVADVVT 138
           +EL   +       D  T
Sbjct: 627 IELISEMRSNGFSGDAFT 644



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+C    I  A  L+ +M   G +PD   +NTL  G  +  +++++ +L  EM+ +
Sbjct: 577 VMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSN 636

Query: 61  GVAADTRTYTIFIDGLCK 78
           G + D  T  +  + +C+
Sbjct: 637 GFSGDAFTIKMAEEIICR 654


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  E++ A  +  EML++ +  D V +  L  G  +  ++  AF++ + M + G
Sbjct: 405 LINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRG 464

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  TYT   DGLCK G +  + EL   +     EL+   Y+ LI+GLCK+G L+ A+
Sbjct: 465 VAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAM 524

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  DV TY+ +I  L   G++D+AHDL  +M +N + P ++T+  L++GF
Sbjct: 525 RTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGF 584

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                     +LL  M EKN+ P+A+
Sbjct: 585 CMSGRVEGGKKLLEWMLEKNIHPNAT 610



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 113/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GYCK  ++  A  +++ M+ +G+ P+VV +  L  GL +   V+ A +L  EM   
Sbjct: 439 VLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNK 498

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK GY+ +++     +     + D+  Y+ LID LCKSG L+ A
Sbjct: 499 GLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRA 558

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +   +VTY+++++G    G+++    L   M E  + PN  T+ +L+  
Sbjct: 559 HDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQ 618

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +   N      E+   M  +NV P+ +  +I++
Sbjct: 619 YCIGNNMKSTTEIYKGMCSRNVEPNENTYNILI 651



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 122/254 (48%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKP------------------------------- 29
           ILI+GYC   E+E A+ L  +M+++G++P                               
Sbjct: 299 ILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHH 358

Query: 30  ----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
               D  ++ T+  G      +  A + FDEMQR G+A D  TYT  I+GLC+ G + E+
Sbjct: 359 KVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEA 418

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ++ + +   + ++D   Y+ L+DG CK G++  A ++ +++ +  +  +VVTY+ +  G
Sbjct: 419 EKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDG 478

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A++L  +M    +  N  T+ +LI+G  +     + +  +  M    + PD
Sbjct: 479 LCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPD 538

Query: 206 ASIVSIVVDLLAKN 219
               + ++D L K+
Sbjct: 539 VYTYTTLIDALCKS 552



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    +E A  L+ EM S    PDVV +  L  G   + ++E A KL D+M   
Sbjct: 267 ILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDMVAR 323

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   YT  +  LC  G + +++ +   +   K  LD   Y+ ++ G C  G L  A
Sbjct: 324 GVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSA 383

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  + R  L  D VTY+ +I+GL   G++ +A  +  +M    +  + +T+  L+ G
Sbjct: 384 RRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDG 443

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +  + ++  ++ + M ++ V P+    + + D L K 
Sbjct: 444 YCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQ 482



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  +++ A  L  EM +KG++ +   +N+L  GL +   +++A +   +M   G
Sbjct: 475 LSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAG 534

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID LCK+G +  + +L + +     +  I  Y+ L++G C SGR+E   
Sbjct: 535 LKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGK 594

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  +  TY+ ++        M    +++  M    V PN  T+  LI G 
Sbjct: 595 KLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGH 654

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +     ++M EK     AS  S ++ LL K +
Sbjct: 655 CKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKK 693



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 97/217 (44%), Gaps = 6/217 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   ++ A+   ++M + G+KPDV  + TL   L +  +++RA  L  EM  +G
Sbjct: 510 LINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNG 569

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + ++G C +G +    +L   +       +   Y+ L+   C    ++   
Sbjct: 570 IKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTT 629

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  +    +  +  TY+I+I G      M +A     +M E        ++  LI   
Sbjct: 630 EIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIR-- 687

Query: 182 IRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDL 215
             +N+  K +E   L H M+++    +  + +  +D 
Sbjct: 688 -LLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDF 723



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +EG   L   ML K I P+   +N+L       + ++   +++  M   
Sbjct: 579 VLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSR 638

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEI 119
            V  +  TY I I G CK   + E+ + F    I K   L   +YS LI  L K  +   
Sbjct: 639 NVEPNENTYNILIKGHCKARSMKEA-QYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVE 697

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
           A +LFH + +    A+   Y+  I   +N+  ++
Sbjct: 698 ARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLE 731



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 7/130 (5%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E++ELF+ L     + ++ +Y+ L+  LC +GR+E A +LF  +       DVVTY I+I
Sbjct: 249 EAIELFQGLP----DKNVCSYNILLKVLCGAGRVEDARQLFDEM---ASPPDVVTYGILI 301

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           HG    G+++ A  L  DM    V PN   + +++         S  + ++  M    V+
Sbjct: 302 HGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVI 361

Query: 204 PDASIVSIVV 213
            D ++ + V+
Sbjct: 362 LDEAVYTTVL 371



 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 50/122 (40%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  YC    ++    +Y  M S+ ++P+   +N L  G  +   ++ A    +EM   G
Sbjct: 615 LMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKG 674

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y+  I  L K    VE+ +LF  +R      +   Y+  ID       LE  L
Sbjct: 675 FRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATL 734

Query: 122 EL 123
            L
Sbjct: 735 AL 736


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 2/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK--PDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           LI G C   E+E A+ +  EM  +G +  P+VV +  L  GL +    E   +  DEM  
Sbjct: 202 LIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMII 261

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  TYT  I GLC+ G  +E+  L   +  + CELD+  Y+ LIDGLCK G L+ 
Sbjct: 262 SGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDF 321

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E+   +    +  DV TY+ +I GL + G +D+A  L  +M    + PN +T+ TLI+
Sbjct: 322 AREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLIN 381

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           GF + +     ++L+++MK   +MP   I  I+
Sbjct: 382 GFTQADRTDHALQLVNEMKSNGLMPAGDIYKIL 414



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 37/251 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK+ ++E  ++L  EM ++G  P VV + TL  G     +V+ A  + DEM+  
Sbjct: 131 ILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHR 190

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL--KCELDIQAYSCLIDGLCKSGRLE 118
           G+  +T TYT  I GLC  G +  ++ + + +++   +C  ++  Y+ LI GLC+ G  E
Sbjct: 191 GITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFE 250

Query: 119 IALE-------------------LFHSL-PRGVLVA---------------DVVTYSIMI 143
           + +E                   L H L  +G  +                DVV Y+ +I
Sbjct: 251 MGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLI 310

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            GL   G++D A ++ + M E  VAP+V T+ +LI G        + + L+ +M+ K ++
Sbjct: 311 DGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIV 370

Query: 204 PDASIVSIVVD 214
           P++   + +++
Sbjct: 371 PNSVTYTTLIN 381



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 2/218 (0%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           ING CK  +I  A+ ++ EM  KG  PD   +N L  GL +  Q+E    L DEMQ  G 
Sbjct: 98  INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           +    TYT  I G C  G +  ++++   +       +   Y+ LI GLC  G +E A+ 
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAIL 217

Query: 123 LFHSLP-RG-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +   +  RG     +VVTY+ +IHGL   G  +   +   +M  +   PN  T+  LIHG
Sbjct: 218 VLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHG 277

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +   LL++M       D  I + ++D L K
Sbjct: 278 LCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCK 315



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 2/213 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + + I  +L +Y   L      DV+ ++    GL +  Q+  A ++F EM+  G A D+ 
Sbjct: 68  RRRGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSF 127

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY I I+GLCK+  +   V L   ++       +  Y+ LI G C +GR++ A+++   +
Sbjct: 128 TYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEM 187

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME--ENAVAPNVITFGTLIHGFIRIN 185
               +  + VTY+ +I GL + G++++A  +  +M+   N   PNV+T+  LIHG  +  
Sbjct: 188 EHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKG 247

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +E L +M      P+ +  + ++  L +
Sbjct: 248 LFEMGMEFLDEMIISGCFPNNATYTALIHGLCQ 280



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 79/147 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+      A  L +EM++ G + DVVI+N+L  GL ++ +++ A ++   M   G
Sbjct: 274 LIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKG 333

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TYT  I GLC  G + E++ L + +R      +   Y+ LI+G  ++ R + AL
Sbjct: 334 VAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHAL 393

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +L + +    L+     Y I+   LY+
Sbjct: 394 QLVNEMKSNGLMPAGDIYKILFKSLYS 420


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK+++++ ALN++ +M SKG KPD+   N+L  GL ++++ E A  L+ +M  +G
Sbjct: 90  LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG 149

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TY   I    + G + E+++L   +    C LD   Y+ LI  LC++G +E  L
Sbjct: 150 VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGL 209

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  + ++ +I+I+GL   G +  A +   DM    + P+++T+ +LI+G 
Sbjct: 210 ALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGL 269

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + L  K++ + + PDA   + ++    K
Sbjct: 270 CKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 306



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 95/180 (52%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++  MLS G  PD+  +NTL +GL +   +  A +L +EMQ  G   +  TYTI ID  C
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + E+  +   +      L+   Y+CLI  LCK  +++ AL +F  +       D+ 
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T++ +I GL    + ++A  L+ DM    V  N IT+ TLIH F+R     + ++L++ M
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 180



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK   +  A  L +EM  KG +P+V+ +  L     +  ++E A  + DEM   G
Sbjct: 20  LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 79

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +   Y   I  LCK+  + +++ +F  +    C+ DI  ++ LI GLCK  + E AL
Sbjct: 80  LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 139

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    ++A+ +TY+ +IH     G M +A  L  DM       + IT+  LI   
Sbjct: 140 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 199

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     K + L   M  K + P+    +I+++ L +
Sbjct: 200 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 236



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + +   ++ AL L ++ML +G   D + +N L   L     +E+   LF++M   G
Sbjct: 160 LIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 219

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +  I I+GLC+ G I  ++E  R +       DI  Y+ LI+GLCK+GR + AL
Sbjct: 220 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEAL 279

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L    +  D +TY+ +I     +G  D AH L     ++   PN +T+  L+  F
Sbjct: 280 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNF 339

Query: 182 IR 183
           I+
Sbjct: 340 IK 341



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 78/154 (50%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           + + M   G   D  TY   I GLCK GY+V + EL   ++I  CE ++  Y+ LID  C
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K GRLE A  +   +    L  + V Y+ +I  L  D ++  A ++F DM      P++ 
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           TF +LI G  ++N+  + + L   M  + V+ + 
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANT 154



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+   IE  L L+ +M+SKG+ P+ +  N L  GL     ++ A +   +M   G
Sbjct: 195 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 254

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+GLCK G   E++ LF  L++     D   Y+ LI   CK G  + A 
Sbjct: 255 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAH 314

Query: 122 ELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMD 153
            L   L RGV    + + VT+ I++     +G  +
Sbjct: 315 LL---LSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+   I+ AL    +M+ +G+ PD+V +N+L  GL +  + + A  LFD++Q +
Sbjct: 229 ILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE 288

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D  TY   I   CK G
Sbjct: 289 GICPDAITYNTLISWHCKEG 308



 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ TY+ +I GL   G +  A +L  +M+     PNVIT+  LI  F +     +   +L
Sbjct: 13  DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 72

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +M  K +  +A   + ++  L K+E   ++L  F
Sbjct: 73  DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 107


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 120/212 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+   +  AL ++ +M+  G KP+VVI+NT+  GL +  QV+ A  L + M++DG
Sbjct: 157 LLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I GLC +G   ++  +   +   +   D+  ++ LID   K GR+  A 
Sbjct: 217 IGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAE 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E +  + R  L  D+VTYS++I+GL    ++D+A ++F  M      P+V+T+  LI+G+
Sbjct: 277 EFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGY 336

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +    ++L  +M ++ V+ +    +I++
Sbjct: 337 CKSKKVEHGMKLFCEMSQRGVVRNTVTYTILI 368



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 115/209 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C    ++ A  ++  M+SKG  PDVV ++ L  G  +  +VE   KLF EM + 
Sbjct: 296 LLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +T TYTI I G C+ G +  + E+FR +       +I  Y+ L+ GLC +G++E A
Sbjct: 356 GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKA 415

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   + +  + AD+VTY+I+I G+   G++  A D++  +    + P++ T+ T++ G
Sbjct: 416 LVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV 209
             +     +   L  KMKE  ++P+   V
Sbjct: 476 LYKKGLRREADALFRKMKEDGILPNECYV 504



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF------------------E 43
           +I+G CK+K+++ AL+L + M   GI PDVV +N+L  GL                   E
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE 251

Query: 44  IH-----------------QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I+                 +V  A + ++EM R  +  D  TY++ I GLC    + E+ 
Sbjct: 252 IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           E+F  +    C  D+  YS LI+G CKS ++E  ++LF  + +  +V + VTY+I+I G 
Sbjct: 312 EMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGY 371

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+++ A ++F  M    V PN+IT+  L+HG     +  K + +L  M++  +  D 
Sbjct: 372 CRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADI 431

Query: 207 SIVSIVVDLLAK 218
              +I++  + K
Sbjct: 432 VTYNIIIRGMCK 443



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 109/220 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +C+  ++  AL+   +M+  G +P +V   +L  G     +V  A  +FD+M   
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   IDGLCK+  +  +++L   +       D+  Y+ LI GLC SGR   A
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  +  DV T++ +I     +G++ +A + + +M   ++ P+++T+  LI+G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               +   +  E+   M  K   PD    SI+++   K++
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSK 340



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 105/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K K+ +  + L+ +M   GI  ++   N L        Q+  A     +M + G
Sbjct: 87  LLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLG 146

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   ++G C+   + +++ +F  +  +  + ++  Y+ +IDGLCKS +++ AL
Sbjct: 147 HEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNAL 206

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + + +  +  DVVTY+ +I GL + G+   A  +   M +  + P+V TF  LI   
Sbjct: 207 DLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDAC 266

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           ++    S+  E   +M  +++ PD    S+++
Sbjct: 267 VKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 20/236 (8%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIK--------------------PDVVIHNTLFIGLF 42
           I G+C ++      + Y EML  GI+                    P +   + L   + 
Sbjct: 33  ICGFCFSRRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAIS 92

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           ++ + +    L+++MQ  G+  +  T  I ++  C+   +  ++     +  L  E  I 
Sbjct: 93  KMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIV 152

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            +  L++G C+  R+  AL +F  +       +VV Y+ +I GL    Q+D A DL   M
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           E++ + P+V+T+ +LI G       S    ++  M ++ + PD    + ++D   K
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 84  ESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +S++LF    +++C     I  +S L+  + K  + ++ + L+  +    +  ++ T +I
Sbjct: 64  DSLDLF--FHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +++      Q+  A      M +    P+++TFG+L++GF R +     + +  +M    
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 202 VMPDASIVSIVVDLLAKNEISLNSL 226
             P+  I + ++D L K++   N+L
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNAL 206


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 124/226 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C+N  +  A+ L  EM  K + PD+V +NTL  GL +  +++ A  L  EM+  
Sbjct: 149 IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 208

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ T T  +DGLCK+G + E++EL   ++    + D+  Y  LI G C +G L+  
Sbjct: 209 GCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRG 268

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    + A+VVTYS ++HGL   GQ  +A+ +   M E+ + P+V+T+  LI G
Sbjct: 269 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDG 328

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +    +  ++LL+ M EK   P     ++++  L K  + +++ 
Sbjct: 329 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAF 374



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 104/198 (52%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           +L +G   +V I N +  GL     V  A  L  EM R  V+ D  +Y   I+GLCK   
Sbjct: 135 VLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKK 194

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + E+V L   +    C  +    + L+DGLCK GR++ A+EL  ++ +    ADVV Y  
Sbjct: 195 LKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGT 254

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I G  N+G +D+  +LF +M    ++ NV+T+  L+HG  R+ +  +   +L+ M E  
Sbjct: 255 LISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHG 314

Query: 202 VMPDASIVSIVVDLLAKN 219
           + PD    + ++D L K+
Sbjct: 315 IHPDVVTYTGLIDGLCKD 332



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK K+++ A+ L  EM + G  P+ V   TL  GL +  +++ A +L + M++ G
Sbjct: 185 LINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKG 244

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD   Y   I G C NG +    ELF  +       ++  YSCL+ GLC+ G+ + A 
Sbjct: 245 FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEAN 304

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +++    +  DVVTY+ +I GL  DG+   A DL   M E    P+ +T+  L+ G 
Sbjct: 305 TVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 364

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +        ++L  M EK    D
Sbjct: 365 CKEGLVIDAFKILRMMIEKGKKAD 388



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 37/255 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           +L++G CK   +  A  +   M+ KG K DVV +NTL  GL +  +V+ A KLF+ M   
Sbjct: 359 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFR---------------------------- 90
            + +  +  T+ + I GLCK G + ++V++ R                            
Sbjct: 419 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 478

Query: 91  -TLRILKCELDIQ------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
             + + K  LD+        YS LIDG CK   L IA  LF  +    L   +  Y+ ++
Sbjct: 479 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 538

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L  +G +++A  LF +M      P++I+F T+I G ++  +   V EL  KM E  + 
Sbjct: 539 ASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR 598

Query: 204 PDASIVSIVVDLLAK 218
           PDA   S +++ L+K
Sbjct: 599 PDALTFSTLINRLSK 613



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 123/254 (48%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C N  ++    L+ EML KGI  +VV ++ L  GL  + Q + A  + + M   G
Sbjct: 255 LISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHG 314

Query: 62  VAADTRTYT-----------------------------------IFIDGLCKNGYIVESV 86
           +  D  TYT                                   + + GLCK G ++++ 
Sbjct: 315 IHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAF 374

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL--PRGVLVADVVTYSIMIH 144
           ++ R +     + D+  Y+ L+ GLC  G+++ AL+LF+S+      L  +V T++++I 
Sbjct: 375 KILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIG 434

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL  +G++ KA  +   M +     N++T+  L+ G ++  +  + +EL  ++ +   +P
Sbjct: 435 GLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVP 494

Query: 205 DASIVSIVVDLLAK 218
           ++   SI++D   K
Sbjct: 495 NSFTYSILIDGFCK 508



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G  K  +I+ A+ L+ ++L  G  P+   ++ L  G  ++  +  A  LF EM+  
Sbjct: 466 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 525

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   +  LCK G + ++  LF+ +    CE DI +++ +IDG  K+G  +  
Sbjct: 526 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFV 585

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L  D +T+S +I+ L   G++D+A      M  +   P+ + + +L+ G
Sbjct: 586 KELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKG 645

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
                + +++I LLH+M  K  + D  IVS ++  L 
Sbjct: 646 LSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 682



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 1/223 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G CK   +  A+ ++ +M+ KG   ++V +N L  G  +  +++ A +L+ ++   
Sbjct: 431 MLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDL 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ TY+I IDG CK   +  +  LF  +R       +  Y+ L+  LCK G LE A
Sbjct: 491 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQA 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       D+++++ MI G    G      +L + M E  + P+ +TF TLI+ 
Sbjct: 551 KSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINR 610

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEIS 222
             ++ E  +    L +M      PDA +  S++  L +K + +
Sbjct: 611 LSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTT 653



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 78/174 (44%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           Q   A  LF       +     T    +D L ++     +  ++R +  +       + S
Sbjct: 54  QFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLS 113

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI+    + + ++   +   + +     +V   +I++ GL  +G + +A  L  +M   
Sbjct: 114 ALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRK 173

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +V+P+++++ TLI+G  +  +  + + LL +M+     P++   + ++D L K+
Sbjct: 174 SVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKD 227



 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 56/130 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K  + +    L  +M+  G++PD +  +TL   L ++ +++ A    + M   G
Sbjct: 572 MIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 631

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   + GL   G   E + L   +      LD +  S ++  LC S +    +
Sbjct: 632 FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVM 691

Query: 122 ELFHSLPRGV 131
           EL  +  +G 
Sbjct: 692 ELLPTFFQGT 701


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C+  ++  A +L  EM+S G+ P+VV  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 402 LIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 461

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   Y+ +I G
Sbjct: 462 MDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHG 521

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  N
Sbjct: 522 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 581

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLIHGF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 582 AITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEEL 633



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +ING+C +     A  L  EML  K I PDVV +N L     +  +   A +L+DEM   
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+   T TY+  IDG CK   +  +  +F  +    C  DI  ++ LI G C++ R++  
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L H +    LVA+ +TY+ +IHG    G ++ A DL  +M  + V PNV+T  TL+ G
Sbjct: 381 IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG 440

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
                +    +E+   M++  +  DAS
Sbjct: 441 LCDNGKLKDALEMFKAMQKSKMDIDAS 467



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 437 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEA 496

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY   I GLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 497 EELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 556

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VA+ +TY  +IHG    G ++ A D+F +M  + V P+
Sbjct: 557 YCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPD 616

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L  ++
Sbjct: 617 TITIRNMLTGLWSKEELKRAVAMLEDLQ 644



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 8/249 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVI-----HNTLFIGLFEIHQVERAFKLFD 55
           +++G CK  +   ALNL  +M     IKP+VVI        +  G     +   A +L  
Sbjct: 220 IVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQ 279

Query: 56  EM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           EM +R  ++ D  TY   I+   K G   E+ EL+  +           YS +IDG CK 
Sbjct: 280 EMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            RL+ A  +F+ +       D++T++ +I G     ++D    L  +M E  +  N IT+
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITY 399

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
            TLIHGF ++ + +   +LL +M    V P+    + ++D L  N    ++L  F   ++
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459

Query: 235 QE-EVDESN 242
            + ++D S+
Sbjct: 460 SKMDIDASH 468



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 109/211 (51%), Gaps = 5/211 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+ +M+     P V+    L   +  + +++    L  +M+   
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  ++TI +   C    +  ++  F  +  L     +  +S L+ GLC   R+  AL
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEAL 168

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH + +     +VVT++ +++GL  +G++ +A  L   M E+ + PN IT+GT++ G 
Sbjct: 169 DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 224

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSI 211
            ++ +    + LL KM+E  ++ P+  I  +
Sbjct: 225 CKMGDTVSALNLLRKMEEVSHIKPNVVIWPL 255



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 4/187 (2%)

Query: 40  GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           G  EI  +E A  LF +M R         +   +  + + G +   + L R + + +   
Sbjct: 52  GFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPC 111

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           +  +++ L+   C   +L  AL  F  + +      VVT+S ++HGL  + ++ +A DLF
Sbjct: 112 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLF 171

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M      PNV+TF TL++G  R     + + LL +M E  + P+      +VD + K 
Sbjct: 172 HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 227

Query: 220 EISLNSL 226
             ++++L
Sbjct: 228 GDTVSAL 234



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   ++ A  ++  M SK   P+VV   TL  G  +  +V+   +LF EM R G
Sbjct: 518 VIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 577

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+  TY   I G  K G I  ++++F+ +       D      ++ GL     L+ A+
Sbjct: 578 IVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAV 637

Query: 122 ELFHSLPRGV 131
            +   L   V
Sbjct: 638 AMLEDLQMSV 647


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I IN +C+  ++  AL +  +M+  G  P +V  N+L  G    +++  A  L D+M   
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  + GL ++    E+V L   + +  C+ D+  Y  +I+GLCK G  ++A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + + +G + ADVV Y+ +I GL     MD A DLF  ME   + P+V T+  LI  
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M EKN+ PD    + ++D   K
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 2/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    I  A+ L  +M+  G +PD V   TL  GLF+ ++   A  L + M   G
Sbjct: 151 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 210

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLCK G    ++ L   +   K E D+  Y+ +IDGLCK   ++ A 
Sbjct: 211 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAF 270

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  DV TY+ +I  L N G+   A  L  DM E  + P+++ F  LI  F
Sbjct: 271 DLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAF 330

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           ++  +  +  +L  +M ++++  D S V  +V
Sbjct: 331 VKEGKLVEAEKLYDEMVKRSI--DPSFVCTIV 360



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 105/208 (50%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ A+ L+ +M+     P +V  + L   + ++++ +    L ++MQ  G++ +  TY+
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           IFI+  C+   +  ++ +   +  L     I   + L++G C   R+  A+ L   +   
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D VT++ ++HGL+   +  +A  L   M      P+++T+G +I+G  +  EP   
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + LL+KM++  +  D  I + ++D L K
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCK 262


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK+++++ ALN++ +M SKG KPD+   N+L  GL ++++ E A  L+ +M  +G
Sbjct: 483 LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG 542

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TY   I    + G + E+++L   +    C LD   Y+ LI  LC++G +E  L
Sbjct: 543 VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGL 602

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  + ++ +I+I+GL   G +  A +   DM    + P+++T+ +LI+G 
Sbjct: 603 ALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGL 662

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + L  K++ + + PDA   + ++    K
Sbjct: 663 CKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 699



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEI-EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LINGY     + E    ++  MLS G  PD+  +NTL +GL +   +  A +L +EMQ  
Sbjct: 377 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYTI ID  CK G + E+  +   +      L+   Y+CLI  LCK  +++ A
Sbjct: 437 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +       D+ T++ +I GL    + ++A  L+ DM    V  N IT+ TLIH 
Sbjct: 497 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 556

Query: 181 FIRINEPSKVIELLHKM 197
           F+R     + ++L++ M
Sbjct: 557 FLRRGAMQEALKLVNDM 573



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQR 59
           +L++G C+  +++ A      +L+K   P+VV+ NTL  G     +++ A  +  E M  
Sbjct: 345 VLMHGLCRMGKVDEA----RMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLS 400

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  TY   I GLCK GY+V + EL   ++I  CE ++  Y+ LID  CK GRLE 
Sbjct: 401 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 460

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +   +    L  + V Y+ +I  L  D ++  A ++F DM      P++ TF +LI 
Sbjct: 461 ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 520

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
           G  ++N+  + + L   M  + V+ + 
Sbjct: 521 GLCKVNKFEEALGLYQDMLLEGVIANT 547



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + +   ++ AL L ++ML +G   D + +N L   L     +E+   LF++M   G
Sbjct: 553 LIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 612

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +  I I+GLC+ G I  ++E  R +       DI  Y+ LI+GLCK+GR + AL
Sbjct: 613 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEAL 672

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L    +  D +TY+ +I     +G  D AH L     ++   PN +T+  L+  F
Sbjct: 673 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNF 732

Query: 182 IR 183
           I+
Sbjct: 733 IK 734



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK   +  A  L +EM  KG +P+V+ +  L     +  ++E A  + DEM   G
Sbjct: 413 LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 472

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +   Y   I  LCK+  + +++ +F  +    C+ DI  ++ LI GLCK  + E AL
Sbjct: 473 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 532

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    ++A+ +TY+ +IH     G M +A  L  DM       + IT+  LI   
Sbjct: 533 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 592

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     K + L   M  K + P+    +I+++ L +
Sbjct: 593 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 629



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 7/178 (3%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           N++ EMLSKGI P V     +   L  +++V+ A  L  +M R G   +   Y   I  L
Sbjct: 221 NVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHAL 280

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
            K G + E ++L   + ++ C  D+  ++  I GLCK  R+  A +L   +       + 
Sbjct: 281 SKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNS 340

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVI 191
            TY +++HGL   G++D+A  + L+   N   PNV+ F TLI+G++   R++E   V+
Sbjct: 341 FTYGVLMHGLCRMGKVDEAR-MLLNKVPN---PNVVLFNTLINGYVSRGRLDEAKAVM 394



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++   C   E++ A  L  +M   G  P+ +++ TL   L ++ +V    KL +EM   
Sbjct: 240 VVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLM 299

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   I GLCK   I E+ +L   + +     +   Y  L+ GLC+ G+++ A
Sbjct: 300 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 359

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIH 179
             L + +P      +VV ++ +I+G  + G++D+A  +  + M      P++ T+ TLI 
Sbjct: 360 RMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 415

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +        EL+++M+ K   P+    +I++D   K
Sbjct: 416 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCK 454



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+   IE  L L+ +M+SKG+ P+ +  N L  GL     ++ A +   +M   G
Sbjct: 588 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 647

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+GLCK G   E++ LF  L++     D   Y+ LI   CK G  + A 
Sbjct: 648 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAH 707

Query: 122 ELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMD 153
            L   L RGV    + + VT+ I++     +G  +
Sbjct: 708 LL---LSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  PDV   N    GL ++ ++  A KL D M   G   ++ TY + + GLC+ G + E+
Sbjct: 300 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 359

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-DVVTYSIMIH 144
             L   +       ++  ++ LI+G    GRL+ A  + H     V    D+ TY+ +I 
Sbjct: 360 RMLLNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 415

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL   G +  A +L  +M+     PNVIT+  LI  F +     +   +L +M  K +  
Sbjct: 416 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLAL 475

Query: 205 DASIVSIVVDLLAKNEISLNSLPSF 229
           +A   + ++  L K+E   ++L  F
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMF 500



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+   I+ AL    +M+ +G+ PD+V +N+L  GL +  + + A  LFD++Q +
Sbjct: 622 ILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE 681

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D  TY   I   CK G
Sbjct: 682 GICPDAITYNTLISWHCKEG 701



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 10/189 (5%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGL 111
           L  +M+++G+      + + +    + G   ++  L   +R +  CE   ++Y+ ++D L
Sbjct: 151 LLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVL 210

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
                 ++   +F+ +    +   V T+ +++  L    ++D A  L  DM  +   PN 
Sbjct: 211 LAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNA 270

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231
           I + TLIH   ++   ++V++LL +M     +PD +  +  +  L K            +
Sbjct: 271 IVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK---------MLRI 321

Query: 232 HERQEEVDE 240
           HE  + VD 
Sbjct: 322 HEAAKLVDR 330


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK+++++ ALN++ +M SKG KPD+   N+L  GL ++++ E A  L+ +M  +G
Sbjct: 465 LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG 524

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TY   I    + G + E+++L   +    C LD   Y+ LI  LC++G +E  L
Sbjct: 525 VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGL 584

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  + ++ +I+I+GL   G +  A +   DM    + P+++T+ +LI+G 
Sbjct: 585 ALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGL 644

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + L  K++ + + PDA   + ++    K
Sbjct: 645 CKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 681



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEI-EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LINGY     + E    ++  MLS G  PD+  +NTL +GL +   +  A +L +EMQ  
Sbjct: 359 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 418

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYTI ID  CK G + E+  +   +      L+   Y+CLI  LCK  +++ A
Sbjct: 419 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +       D+ T++ +I GL    + ++A  L+ DM    V  N IT+ TLIH 
Sbjct: 479 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 538

Query: 181 FIRINEPSKVIELLHKM 197
           F+R     + ++L++ M
Sbjct: 539 FLRRGAMQEALKLVNDM 555



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQR 59
           +L++G C+  +++ A      +L+K   P+VV+ NTL  G     +++ A  +  E M  
Sbjct: 327 VLMHGLCRMGKVDEA----RMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLS 382

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  TY   I GLCK GY+V + EL   ++I  CE ++  Y+ LID  CK GRLE 
Sbjct: 383 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 442

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +   +    L  + V Y+ +I  L  D ++  A ++F DM      P++ TF +LI 
Sbjct: 443 ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 502

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
           G  ++N+  + + L   M  + V+ + 
Sbjct: 503 GLCKVNKFEEALGLYQDMLLEGVIANT 529



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + +   ++ AL L ++ML +G   D + +N L   L     +E+   LF++M   G
Sbjct: 535 LIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 594

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +  I I+GLC+ G I  ++E  R +       DI  Y+ LI+GLCK+GR + AL
Sbjct: 595 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEAL 654

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L    +  D +TY+ +I     +G  D AH L     ++   PN +T+  L+  F
Sbjct: 655 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNF 714

Query: 182 IR 183
           I+
Sbjct: 715 IK 716



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK   +  A  L +EM  KG +P+V+ +  L     +  ++E A  + DEM   G
Sbjct: 395 LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 454

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +   Y   I  LCK+  + +++ +F  +    C+ DI  ++ LI GLCK  + E AL
Sbjct: 455 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 514

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    ++A+ +TY+ +IH     G M +A  L  DM       + IT+  LI   
Sbjct: 515 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 574

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     K + L   M  K + P+    +I+++ L +
Sbjct: 575 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 611



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 7/178 (3%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           N++ EMLSKGI P V     +   L  +++V+ A  L  +M R G   +   Y   I  L
Sbjct: 203 NVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHAL 262

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
            K G + E ++L   + ++ C  D+  ++  I GLCK  R+  A +L   +       + 
Sbjct: 263 XKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNS 322

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVI 191
            TY +++HGL   G++D+A  + L+   N   PNV+ F TLI+G++   R++E   V+
Sbjct: 323 FTYGVLMHGLCRMGKVDEAR-MLLNKVPN---PNVVLFNTLINGYVSRGRLDEAKAVM 376



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++   C   E++ A  L  +M   G  P+ +++ TL   L ++ +V    KL +EM   
Sbjct: 222 VVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLM 281

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   I GLCK   I E+ +L   + +     +   Y  L+ GLC+ G+++ A
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 341

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIH 179
             L + +P      +VV ++ +I+G  + G++D+A  +  + M      P++ T+ TLI 
Sbjct: 342 RMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 397

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +        EL+++M+ K   P+    +I++D   K
Sbjct: 398 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCK 436



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+   IE  L L+ +M+SKG+ P+ +  N L  GL     ++ A +   +M   G
Sbjct: 570 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 629

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+GLCK G   E++ LF  L++     D   Y+ LI   CK G  + A 
Sbjct: 630 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAH 689

Query: 122 ELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMD 153
            L   L RGV    + + VT+ I++     +G  +
Sbjct: 690 LL---LSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  PDV   N    GL ++ ++  A KL D M   G   ++ TY + + GLC+ G + E+
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 341

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-DVVTYSIMIH 144
             L   +       ++  ++ LI+G    GRL+ A  + H     V    D+ TY+ +I 
Sbjct: 342 RMLLNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 397

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL   G +  A +L  +M+     PNVIT+  LI  F +     +   +L +M  K +  
Sbjct: 398 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLAL 457

Query: 205 DASIVSIVVDLLAKNEISLNSLPSF 229
           +A   + ++  L K+E   ++L  F
Sbjct: 458 NAVGYNCLISALCKDEKVQDALNMF 482



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+   I+ AL    +M+ +G+ PD+V +N+L  GL +  + + A  LFD++Q +
Sbjct: 604 ILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE 663

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D  TY   I   CK G
Sbjct: 664 GICPDAITYNTLISWHCKEG 683



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 10/189 (5%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGL 111
           L  +M+++G+      + + +    + G   ++  L   +R +  CE   ++Y+ ++D L
Sbjct: 133 LLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVL 192

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
                 ++   +F+ +    +   V T+ +++  L    ++D A  L  DM  +   PN 
Sbjct: 193 LAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNA 252

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231
           I + TLIH   ++   ++V++LL +M     +PD +  +  +  L K            +
Sbjct: 253 IVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK---------MLRI 303

Query: 232 HERQEEVDE 240
           HE  + VD 
Sbjct: 304 HEAAKLVDR 312


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 116/205 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+   +  A++L S+M   G +PDVVI+NT+  G  +I  V  A +LFD M+RDG
Sbjct: 145 LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY   + GLC +G   ++  L R + +     ++  ++ +ID   K G+   A+
Sbjct: 205 VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAM 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + R  +  DV TY+ +I+GL   G++D+A  +   M      P+V+T+ TLI+GF
Sbjct: 265 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +     +  +L  +M ++ ++ D 
Sbjct: 325 CKSKRVDEGTKLFREMAQRGLVGDT 349



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 3/203 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C +  ++ A  +   M++KG  PDVV +NTL  G  +  +V+   KLF EM + G
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I G  + G    + E+F  +       +I+ YS L+ GLC + R+E AL
Sbjct: 345 LVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKAL 401

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++ +  +  D+ TY+I+IHG+   G ++ A DLF  +    + P+V+++ T+I GF
Sbjct: 402 VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 461

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R  +  K   L  KM+E  ++P
Sbjct: 462 CRKRQWDKSDLLYRKMQEDGLLP 484



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+      AL++  +M+  G +PDVV  ++L  G  + ++V  A  L  +M+  
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   IDG CK G + ++VELF  +       D   Y+ L+ GLC SGR   A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +V +V+T++ +I     +G+  +A  L+ +M    V P+V T+ +LI+G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                R++E  ++++L   M  K  +PD    + +++   K++
Sbjct: 289 LCMHGRVDEAKQMLDL---MVTKGCLPDVVTYNTLINGFCKSK 328



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 3/204 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ + K  +   A+ LY EM  + + PDV  +N+L  GL    +V+ A ++ D M   G
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+G CK+  + E  +LFR +       D   Y+ +I G  ++GR + A 
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       ++ TYSI+++GL  + +++KA  LF +M+++ +  ++ T+  +IHG 
Sbjct: 370 EIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 426

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +I       +L   +  K + PD
Sbjct: 427 CKIGNVEDAWDLFRSLSCKGLKPD 450



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 100/198 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K  +  ++L+  M   GI  D+  +N +   L    +   A  +  +M + G   D  
Sbjct: 81  KSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVV 140

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T +  I+G C+   + ++++L   +  +    D+  Y+ +IDG CK G +  A+ELF  +
Sbjct: 141 TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 200

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R  + AD VTY+ ++ GL   G+   A  L  DM    + PNVITF  +I  F++  + 
Sbjct: 201 ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 260

Query: 188 SKVIELLHKMKEKNVMPD 205
           S+ ++L  +M  + V PD
Sbjct: 261 SEAMKLYEEMTRRCVDPD 278



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E  ++L+ +M+     P +V  + +   + +    +    LF  M+  G+  D  +Y I
Sbjct: 50  LEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNI 109

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I+ LC+    V ++ +   +     E D+   S LI+G C+  R+  A++L   +    
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DVV Y+ +I G    G ++ A +LF  ME + V  + +T+ +L+ G       S   
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
            L+  M  ++++P+    + V+D+  K
Sbjct: 230 RLMRDMVMRDIVPNVITFTAVIDVFVK 256



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C N  +E AL L+  M    I+ D+  +N +  G+ +I  VE A+ LF  +   
Sbjct: 386 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 445

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  D  +YT  I G C+     +S  L+R ++
Sbjct: 446 GLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 478



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +E A +L+  +  KG+KPDVV + T+  G     Q +++  L+ +MQ D
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480

Query: 61  GV 62
           G+
Sbjct: 481 GL 482



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E ++LF  +   +    I  +S ++  + KS   ++ + LFH +    +  D+ +Y+I+I
Sbjct: 52  EEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVI 111

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           + L    +   A  +   M +    P+V+T  +LI+GF + N     I+L+ KM+E    
Sbjct: 112 NCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFR 171

Query: 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
           PD  I + ++D   K  +  +++  F   ER
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMER 202


>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
 gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
          Length = 864

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 117/213 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK   +  AL+LY EM+S G  PDVV ++++  GL +   +  A  L  EM + G
Sbjct: 162 LISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMG 221

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y I +D L K G   ES      + +     D+   + LIDGL K+G+ + A 
Sbjct: 222 VNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAE 281

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L +   + + +TY+ MI G    G MD A  L  DME+  V PNV+T+ ++I+G+
Sbjct: 282 AMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGY 341

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +       + ++ KM ++N+MP+A I + ++D
Sbjct: 342 TKKGMLDVAVRIMKKMLDQNIMPNAYIYATLID 374



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 109/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN YCK  ++E A+ L++EM    + P+ +  N L  GL +  + ERA  + +EM   G
Sbjct: 511 MINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLWG 570

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   ++   K       +++ + L  +  + + + Y+ LI  LC  G  + A 
Sbjct: 571 ICPNVTIHRALLNACSKCERADTILQMHKRLVGMGLKANREVYNSLITVLCGLGMTKRAT 630

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +++ +  + AD VTY+ +IHG +    ++KA   +  M    V+P + T+  L+ G 
Sbjct: 631 LVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNLLLGGL 690

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +     SK  E+L KMK+  + PDAS+ + ++
Sbjct: 691 LAAGLMSKAYEILSKMKDSGLDPDASLYNTLI 722



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 130/279 (46%), Gaps = 48/279 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  +++GA +L  +M  K + P+VV ++++  G  +   ++ A ++  +M    
Sbjct: 302 MIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQN 361

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE----------------------- 98
           +  +   Y   IDG  K G    +V+L+  +++   E                       
Sbjct: 362 IMPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAE 421

Query: 99  ------------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                       LD   Y+ L+DG  K+GR   A  +   +    +  DVV Y+++I+GL
Sbjct: 422 GLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGL 481

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+ D A  ++  + E  +AP+  T+ T+I+ + +  +    I+L ++MK  +VMP++
Sbjct: 482 LRLGKYD-AESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNS 540

Query: 207 SIVSIVVDLLAK-----------NEISLNSL-PSFTVHE 233
              +I+V  L+K           NE+ L  + P+ T+H 
Sbjct: 541 ITCNILVGGLSKAGETERAIDVLNEMLLWGICPNVTIHR 579



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K  + + A++LY+EM   G++ +  I +     L    ++E A  L   M   G
Sbjct: 372 LIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKG 431

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  +DG  K G    +  +   +     + D+ AY+ LI+GL + G+ + A 
Sbjct: 432 LLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYD-AE 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +    L  D  TY+ MI+     G+++ A  L+ +M+ ++V PN IT   L+ G 
Sbjct: 491 SVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGL 550

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E  + I++L++M    + P+ +I   +++  +K E
Sbjct: 551 SKAGETERAIDVLNEMLLWGICPNVTIHRALLNACSKCE 589



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 102/196 (52%), Gaps = 4/196 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            IN   + +++E A  L   M+SKG+  D V + +L  G F+  +   AF + ++M   G
Sbjct: 407 FINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETG 466

Query: 62  VAADTRTYTIFIDGLCKNG-YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D   Y + I+GL + G Y  ESV  +  +R L    D   Y+ +I+  CK G+LE A
Sbjct: 467 IKFDVVAYNVLINGLLRLGKYDAESV--YSGIRELGLAPDRATYNTMINAYCKQGKLENA 524

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L++ +    ++ + +T +I++ GL   G+ ++A D+  +M    + PNV     L++ 
Sbjct: 525 IKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNA 584

Query: 181 FIRINEPSKVIELLHK 196
             +      +++ +HK
Sbjct: 585 CSKCERADTILQ-MHK 599



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G  K  E E A+++ +EML  GI P+V IH  L     +  + +   ++   +   
Sbjct: 545 ILVGGLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNACSKCERADTILQMHKRLVGM 604

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+   Y   I  LC  G    +  +   +       D   Y+ LI G  KS  +E A
Sbjct: 605 GLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKA 664

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  +  +    +   + TY++++ GL   G M KA+++   M+++ + P+   + TLI G
Sbjct: 665 LATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLISG 724

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +I    + I+   +M  K ++P  S  +++++  AK
Sbjct: 725 HGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAK 762



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 12/211 (5%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           + M  +GI  D V +N L  G F+   +E+A   + +M  +GV+   RTY + + GL   
Sbjct: 634 NNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNLLLGGLLAA 693

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           G + ++ E+   ++    + D   Y+ LI G  K G  + A++ +  +    LV    TY
Sbjct: 694 GLMSKAYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTY 753

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---------RINEPSKV 190
           +++I      G+MD+A +L  +M+   V PN  T+  LI G+          RI++ +  
Sbjct: 754 NVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGWCNLSKQPELDRISKKTYR 813

Query: 191 IE---LLHKMKEKNVMPDASIVSIVVDLLAK 218
            E   L  +M EK  +P  + ++ +    A+
Sbjct: 814 TEARTLFAEMNEKGFVPCENTLACISSTFAR 844



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           S+M+  G+  D+V+  TL  GLF+  + + A  +F  + +     +  TYT  IDG CK 
Sbjct: 250 SQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKL 309

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           G +  +  L R +   +   ++  YS +I+G  K G L++A+ +   +    ++ +   Y
Sbjct: 310 GDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIY 369

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           + +I G    G+ D A DL+ +M+ N +  N       I+   R  +  +   L   M  
Sbjct: 370 ATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMS 429

Query: 200 KNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           K ++ D    + ++D   K   +     +FT+ E+  E 
Sbjct: 430 KGLLLDRVNYTSLMDGFFK---TGRESAAFTMAEKMAET 465



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 104/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K +  +  L ++  ++  G+K +  ++N+L   L  +   +RA  + + M ++G
Sbjct: 581 LLNACSKCERADTILQMHKRLVGMGLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEG 640

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ADT TY   I G  K+ +I +++  +  +        I+ Y+ L+ GL  +G +  A 
Sbjct: 641 ISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAY 700

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    L  D   Y+ +I G    G   +A   + +M    + P   T+  LI  F
Sbjct: 701 EILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDF 760

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++ +  +  ELL++M+ + V P++S   I++
Sbjct: 761 AKVGKMDQARELLNEMQVRRVPPNSSTYDILI 792



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 101/217 (46%), Gaps = 15/217 (6%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +    +LYSEMLS G+ P+V  HN L     ++  +  A  L   +  D    DT TY  
Sbjct: 27  VSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLALDLIRNVDID---VDTVTYNT 83

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPR 129
            I G C+ G   +       +  +K +    +++C  L+ G C+ G ++    +  +L  
Sbjct: 84  AIWGFCQQGLANQGFGFLSIM--VKKDTFFDSFTCNILVKGFCRIGSVKYGEWVMDNLID 141

Query: 130 GV--------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +        L  ++VTY+ +I        + +A  L+ +M  +   P+V+T+ ++I+G 
Sbjct: 142 DMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGL 201

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    ++   LL +M +  V P+  + +I+VD L K
Sbjct: 202 CKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSLFK 238



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 26/185 (14%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  + S+M   G+ PD  ++NTL  G  +I   + A K + EM   G+   T TY + I+
Sbjct: 699 AYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIE 758

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
              K G + ++ EL   +++ +   +   Y  LI G C    L    EL     +     
Sbjct: 759 DFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGWC---NLSKQPELDRISKK----- 810

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
              TY              +A  LF +M E    P   T   +   F R   P  V++  
Sbjct: 811 ---TYRT------------EARTLFAEMNEKGFVPCENTLACISSTFAR---PGMVVDAK 852

Query: 195 HKMKE 199
           H +K+
Sbjct: 853 HMLKD 857


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A +LYSE +SK I PDV  +N L  G   + +++ A  LF++M    
Sbjct: 339 IIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKN 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T++I +DG CK+G I E+  +   +     + D+  YS L+DG C    +  A 
Sbjct: 399 IIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAE 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++    + A+V +Y+IMI+G      +D+A  LF +M    + P+VIT+ +LI G 
Sbjct: 459 SIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGL 518

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  +EL+ +M  +   PD    + ++D L K
Sbjct: 519 CKSGRISYALELVDEMHYRGQQPDIITYNSILDALCK 555



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 36/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK+  I+ A N+ + M+ + IKPDVV +++L  G   +++V +A  +F+ M   
Sbjct: 408 ILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHR 467

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+ ++Y I I+G CK   + E+++LF+ +   +   D+  YS LIDGLCKSGR+  A
Sbjct: 468 GVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYA 527

Query: 121 LELF-------------------------HSLPRGVLV----------ADVVTYSIMIHG 145
           LEL                          H + + + +           D+ TY+I++ G
Sbjct: 528 LELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKG 587

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+++ A  +F D+       +V  +  +I GF       + + LL KM+E   +PD
Sbjct: 588 LCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPD 647

Query: 206 ASIVSIVV-DLLAKNE 220
           A    I++  L  K+E
Sbjct: 648 AKTYEIIILSLFEKDE 663



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 5/217 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K ++ A+ L+ EM  K I PDV+ +++L  GL +  ++  A +L DEM   
Sbjct: 478 IMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYR 537

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +D LCK  ++ +++ L   L+      D+  Y+ L+ GLC+SG+LE A
Sbjct: 538 GQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDA 597

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       DV  Y++MI G  + G  D+A  L   MEEN   P+  T+  +I  
Sbjct: 598 RKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILS 657

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
               +E     +LL +M  + ++     V++  DL+A
Sbjct: 658 LFEKDENDMAEKLLREMIMRGLL-----VALTDDLVA 689



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E + AL L      K ++PDVV++NT+  G+ +   V  AF L+ E     
Sbjct: 304 LINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKR 363

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G C  G + ++++LF  +       D+  +S L+DG CK G ++ A 
Sbjct: 364 IFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAK 423

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DVVTYS ++ G     +++KA  +F  M    V  NV ++  +I+GF
Sbjct: 424 NVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGF 483

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I    + ++L  +M  K + PD    S ++D L K+
Sbjct: 484 CKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKS 521



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 125/235 (53%), Gaps = 1/235 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G+C   +I  AL+ + ++++ G   D V + TL  GL ++ + + A +L        
Sbjct: 269 FIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKL 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y   IDG+CK+ ++ ++ +L+      +   D+  Y+ LI G C  G+L+ A+
Sbjct: 329 VQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAI 388

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    ++ DV T+SI++ G   DG + +A ++   M + ++ P+V+T+ +L+ G+
Sbjct: 389 DLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGY 448

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHERQ 235
             +NE +K   + + M  + V  +    +I+++   K ++   ++  F  +H +Q
Sbjct: 449 CLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQ 503



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 85/161 (52%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           ++G   DT T T FI G C  G I +++     +  +   LD  +Y  LI+GLCK G  +
Sbjct: 256 KNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETK 315

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            ALEL       ++  DVV Y+ +I G+  D  ++ A DL+ +     + P+V T+  LI
Sbjct: 316 AALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALI 375

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            GF  + +    I+L +KM  KN++PD    SI+VD   K+
Sbjct: 376 SGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKD 416



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 92/194 (47%)

Query: 21  EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
           ++L  G +PD +   T   G     Q+ +A    D++   G   D  +Y   I+GLCK G
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
               ++EL R       + D+  Y+ +IDG+CK   +  A +L+       +  DV TY+
Sbjct: 313 ETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I G    G++  A DLF  M    + P+V TF  L+ GF +     +   +L  M ++
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ 432

Query: 201 NVMPDASIVSIVVD 214
           ++ PD    S ++D
Sbjct: 433 SIKPDVVTYSSLMD 446


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 116/205 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+   +  A++L S+M   G +PDVVI+NT+  G  +I  V  A +LFD M+RDG
Sbjct: 86  LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY   + GLC +G   ++  L R + +     ++  ++ +ID   K G+   A+
Sbjct: 146 VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAM 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + R  +  DV TY+ +I+GL   G++D+A  +   M      P+V+T+ TLI+GF
Sbjct: 206 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 265

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +     +  +L  +M ++ ++ D 
Sbjct: 266 CKSKRVDEGTKLFREMAQRGLVGDT 290



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 3/203 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C +  ++ A  +   M++KG  PDVV +NTL  G  +  +V+   KLF EM + G
Sbjct: 226 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I G  + G    + E+F  +       +I+ YS L+ GLC + R+E AL
Sbjct: 286 LVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKAL 342

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++ +  +  D+ TY+I+IHG+   G ++ A DLF  +    + P+V+++ T+I GF
Sbjct: 343 VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 402

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R  +  K   L  KM+E  ++P
Sbjct: 403 CRKRQWDKSDLLYRKMQEDGLLP 425



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+      AL++  +M+  G +PDVV  ++L  G  + ++V  A  L  +M+  
Sbjct: 50  IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   IDG CK G + ++VELF  +       D   Y+ L+ GLC SGR   A
Sbjct: 110 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 169

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +V +V+T++ +I     +G+  +A  L+ +M    V P+V T+ +LI+G
Sbjct: 170 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 229

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                R++E  ++++L   M  K  +PD    + +++   K++
Sbjct: 230 LCMHGRVDEAKQMLDL---MVTKGCLPDVVTYNTLINGFCKSK 269



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 3/204 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ + K  +   A+ LY EM  + + PDV  +N+L  GL    +V+ A ++ D M   G
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 250

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+G CK+  + E  +LFR +       D   Y+ +I G  ++GR + A 
Sbjct: 251 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 310

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       ++ TYSI+++GL  + +++KA  LF +M+++ +  ++ T+  +IHG 
Sbjct: 311 EIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 367

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +I       +L   +  K + PD
Sbjct: 368 CKIGNVEDAWDLFRSLSCKGLKPD 391



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 100/198 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K  +  ++L+  M   GI  D+  +N +   L    +   A  +  +M + G   D  
Sbjct: 22  KSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVV 81

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T +  I+G C+   + ++++L   +  +    D+  Y+ +IDG CK G +  A+ELF  +
Sbjct: 82  TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 141

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R  + AD VTY+ ++ GL   G+   A  L  DM    + PNVITF  +I  F++  + 
Sbjct: 142 ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 201

Query: 188 SKVIELLHKMKEKNVMPD 205
           S+ ++L  +M  + V PD
Sbjct: 202 SEAMKLYEEMTRRCVDPD 219



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 88/190 (46%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +V  + +   + +    +    LF  M+  G+  D  +Y I I+ LC+    V ++ +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +     E D+   S LI+G C+  R+  A++L   +       DVV Y+ +I G   
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G ++ A +LF  ME + V  + +T+ +L+ G       S    L+  M  ++++P+   
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 187

Query: 209 VSIVVDLLAK 218
            + V+D+  K
Sbjct: 188 FTAVIDVFVK 197



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C N  +E AL L+  M    I+ D+  +N +  G+ +I  VE A+ LF  +   
Sbjct: 327 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 386

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  D  +YT  I G C+     +S  L+R ++
Sbjct: 387 GLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 419



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +E A +L+  +  KG+KPDVV + T+  G     Q +++  L+ +MQ D
Sbjct: 362 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 421

Query: 61  GV 62
           G+
Sbjct: 422 GL 423



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           +S ++  + KS   ++ + LFH +    +  D+ +Y+I+I+ L    +   A  +   M 
Sbjct: 13  FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 72

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
           +    P+V+T  +LI+GF + N     I+L+ KM+E    PD  I + ++D   K  +  
Sbjct: 73  KFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVN 132

Query: 224 NSLPSFTVHER 234
           +++  F   ER
Sbjct: 133 DAVELFDRMER 143


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +CK+ ++  A     EM  +   PDVV +NT+  GL ++ ++  A  + D+MQ  G
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TY+  I+GLCK+  +VE+ +L   +    C  D+  Y+ +IDGLCK GRLE A
Sbjct: 298 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 357

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R     +VVTY+ +I GL    ++D+A  +  +M      PN++T+ T+++G
Sbjct: 358 EYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 417

Query: 181 FIRINEPSKVIELLHKMKE--KNVMPDASIVSIVVDLLAKNEI 221
                   +  +L+ +MK+      PDA+    +V+ L  +++
Sbjct: 418 LCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDL 460



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CK   +  A ++  +M+  G  P+V+  N+L  G  +   V+ A KL   M   
Sbjct: 97  VLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK 156

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  IDGLCK+   +E+ E+   ++      D   YS LI GLCK+ ++E A
Sbjct: 157 GMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEA 216

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       DVV YS +IH     G++ +A     +M +   +P+V+T+ T+I G
Sbjct: 217 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 276

Query: 181 FIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNEI 221
             ++ + ++   +L +M+E  +V+PD    S V++ L K+++
Sbjct: 277 LCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDM 318



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + + K++E A+ L  EM  +G  P++V +N L   L ++  V  A  +  +M   G
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T+   +DG CK G + ++ +L   +       ++  YS LIDGLCKS +   A 
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK 182

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  D  TYS +IHGL    ++++A  +   M  +   P+V+ + ++IH F
Sbjct: 183 EVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 242

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +  + L +M+++   PD    + V+D L K
Sbjct: 243 CKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 3/214 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   ++  AL L  EM S G  PD   H  +   +     ++ A    D ++  G   + 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM---DHLRSMGCDPNV 57

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I    +   + E+++L   +R   C  ++  Y+ L+D LCK   +  A ++   
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +  G    +V+T++ ++ G    G +D A  L   M    + PNV+T+  LI G  +  +
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  E+L +MK   V PDA   S ++  L K +
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKAD 211


>gi|224160730|ref|XP_002338246.1| predicted protein [Populus trichocarpa]
 gi|222871516|gb|EEF08647.1| predicted protein [Populus trichocarpa]
          Length = 235

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 15/221 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+++ ++ A +L +EM  K + PD V ++TL  GL ++ + + A  LF EM   
Sbjct: 15  ILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCST 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+I +DG  K+G++ E+++L ++++  K E DI               LE+A
Sbjct: 75  GLLPNLVTYSILLDGFWKHGHLDEALKLLQSMQEKKLEPDI---------------LEVA 119

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    +   V TYS+MI GL  +   D+A+ LF  ME++   P+  ++  +I G
Sbjct: 120 KELFSKLFVDGIRPTVHTYSVMIKGLLKERLSDEAYRLFRKMEDDGFMPDSCSYNVIIQG 179

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F++I + S  + L+ +M  K    D++   +++DL + +EI
Sbjct: 180 FLQIRDSSTAVRLIDEMVGKGFSADSTTFQMLLDLESDDEI 220



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M R G      +Y I I+G C++  + E+  L   +   +   D   YS L+ GLC+ GR
Sbjct: 1   MVRKGCGPVVHSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQVGR 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI---- 172
            + AL LF  +    L+ ++VTYSI++ G +  G +D+A  L   M+E  + P+++    
Sbjct: 61  PQEALNLFKEMCSTGLLPNLVTYSILLDGFWKHGHLDEALKLLQSMQEKKLEPDILEVAK 120

Query: 173 ----------------TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                           T+  +I G ++     +   L  KM++   MPD+   ++++
Sbjct: 121 ELFSKLFVDGIRPTVHTYSVMIKGLLKERLSDEAYRLFRKMEDDGFMPDSCSYNVII 177


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 125/220 (56%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCKN  ++ AL LY EM SK +KP+ + +N +  GLF   +V  A + + ++   G
Sbjct: 476 LLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSG 535

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY I + GLC+N ++ E++ +F+ LR  + +L+++ ++ +I GL K GR+  A 
Sbjct: 536 IQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAK 595

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF + LP G LV D + Y +MI     +G ++++ +LFL ME+N    N  T   ++  
Sbjct: 596 SLFSAILPSG-LVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRK 654

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +   +  +    L K+ EK    +AS   +++ ++++ +
Sbjct: 655 LLEKGDVRRAGTYLTKIDEKEYSVEASTAVLLISIVSERK 694



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 3/240 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK   +E A++ +S+M+S+G+ PD++   +L  GL  I + ++  KL  EM   G+  + 
Sbjct: 341 CKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNA 400

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
                 +D LCK G ++E+ + F  +  +  + D+ +Y+ LIDG C  G+++ +++L   
Sbjct: 401 IFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGR 460

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  D VTYS +++G   +G++D A  L+ +M    V PN IT+  ++HG      
Sbjct: 461 MVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGR 520

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHERQEEVDESNV 243
                E   K+ +  +    +  +IV+  L +N     +L         E Q EV   N+
Sbjct: 521 VVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNI 580



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   E +    L  EM+++GI P+ +  NT+   L +  +V  A   FD++   G
Sbjct: 371 LIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVG 430

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +YTI IDG C +G + ES++L   +  +    D   YS L++G CK+GR++ AL
Sbjct: 431 VKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDAL 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    +  + +TY+I++HGL++ G++  A + ++ + ++ +   + T+  ++ G 
Sbjct: 491 ALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGL 550

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              +   + + +   ++ K    +    +I++
Sbjct: 551 CENSFVDEALRMFQGLRSKEFQLEVRTFNIMI 582



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 51/269 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL----------------FEI 44
           ++ING  K  E++ A  L+ EML +G  P++V +N++  GL                F+ 
Sbjct: 144 MVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDK 203

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
            Q+E A +L  +M   G+  D  TY++ ID  CK G   E+  +F ++       D   Y
Sbjct: 204 GQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTY 263

Query: 105 SCLIDGLCKSG-----------------------------------RLEIALELFHSLPR 129
             L+ G    G                                    L+ A+  F  + +
Sbjct: 264 RTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQ 323

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                +VVTY+ +I  L   G+++ A   F  M    ++P++ITF +LIHG   I E  K
Sbjct: 324 KGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKK 383

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V +L  +M  + + P+A  ++ ++D L K
Sbjct: 384 VEKLSFEMINRGIHPNAIFLNTIMDSLCK 412



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 16/206 (7%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK---------- 78
           P+V+ +N +  GLF+  +V++A+ LF EM   G   +  TY   IDGLCK          
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 79  ------NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
                  G + E+V L + +     + D+  YS LID  CK GR   A  +F S+ R   
Sbjct: 197 LQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQ 256

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             D  TY  ++HG    G +   HDL   M ++ +      F  LI  + +     K + 
Sbjct: 257 NPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMT 316

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
              +M++K   P+    + V+D+L K
Sbjct: 317 AFIEMRQKGFSPNVVTYTTVIDILCK 342



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 104/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK   +  A + + +++  G+KPDVV +  L  G     +++ + KL   M   G
Sbjct: 406 IMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  ++G CKNG + +++ L+R +     + +   Y+ ++ GL  +GR+  A 
Sbjct: 466 LRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAR 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E +  +    +   + TY+I++ GL  +  +D+A  +F  +        V TF  +I G 
Sbjct: 526 EFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGL 585

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +++        L   +    ++PDA I  +++
Sbjct: 586 LKVGRIGDAKSLFSAILPSGLVPDAIIYGLMI 617



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 37/255 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG------LFEIHQV------- 47
           +LI+ YCK      A N++  M+ +G  PD   + TL  G      L ++H +       
Sbjct: 230 LLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQD 289

Query: 48  ----------------------ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                 ++A   F EM++ G + +  TYT  ID LCK G + ++
Sbjct: 290 GIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDA 349

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL-FHSLPRGVLVADVVTYSIMIH 144
           V  F  +       DI  ++ LI GLC  G  +   +L F  + RG+    +   +IM  
Sbjct: 350 VSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIM-D 408

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L  +G++ +AHD F  +    V P+V+++  LI G+    +  + I+LL +M    + P
Sbjct: 409 SLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRP 468

Query: 205 DASIVSIVVDLLAKN 219
           D    S +++   KN
Sbjct: 469 DNVTYSALLNGYCKN 483



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 36/231 (15%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-------EIHQVERAFKLFDEMQRDGV-- 62
           +E ALNL+ E+L +     V   N +   +        + H    A  LF+ M + GV  
Sbjct: 30  LEDALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMAQVGVNK 89

Query: 63  -AADTRTYTIFIDGLCKNGYIVESVEL-FRTLRI---------LKCELDIQAYSCLIDGL 111
            A D  T+ I I   C  G +  ++E   R  R            C  ++ +Y+ +I+GL
Sbjct: 90  LATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGL 149

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL----------------YNDGQMDKA 155
            K G ++ A  LFH +       ++VTY+ +I GL                ++ GQ+++A
Sbjct: 150 FKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEA 209

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             L   M    + P+V+T+  LI  + +I   ++   +   M  +   PDA
Sbjct: 210 VRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDA 260


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 111/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+NK ++ A  ++  M  KG + + V +  L  GL E  ++  A KLF +M  D 
Sbjct: 235 LILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDN 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                RTYT+ I  L  +G  VE++ LF  ++   CE ++  Y+ LIDGLCK  +++ A 
Sbjct: 295 CCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEAR 354

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    L+  VVTY+ +I G   +G +D A ++   ME N+  PN  T+  LI G 
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  K + LL+KM E+ + P 
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPS 438



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 110/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK +++  A+ L ++ML + + P ++ +N+L  G  +++ +E A++L   M  +G
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++FID LCK G + E+  LF +++    + +   Y+ LIDG CK G++++A 
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAY 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + +  TY+++I GL  + +M +A  L   M    V P V+T+  LI   
Sbjct: 530 SLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM 589

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++       +++ + M      PD
Sbjct: 590 LKDGAFDHALKVFNHMVSLGYQPD 613



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+   I  AL L+++M      P V  +  L   L    +   A  LF+EM+  G
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT+ IDGLCK   + E+ ++   +        +  Y+ LIDG CK G ++ A 
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +       +  TY+ +I GL    ++ KA  L   M E  ++P++IT+ +LIHG 
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++N+      LL  M E  ++PD    S+ +D L K
Sbjct: 450 CKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 113/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK  +++ A  + SEM  KG+ P VV +N L  G  +   ++ AF++ D M+ +
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN 398

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +TRTY   I GLCK   + +++ L   +   K    +  Y+ LI G CK   LE A
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESA 458

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    LV D  TYS+ I  L  +G++++A  LF  ++   V  N + +  LI G
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + ++ +      LL +M     +P++   +++++ L K +
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEK 558



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 111/217 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+  CK   +E A  L+  + +KG+K + VI+  L  G  ++ +++ A+ L + M  D
Sbjct: 479 VFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLND 538

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               ++ TY + I+GLCK   + E+  L   +  +  +  +  Y+ LI  + K G  + A
Sbjct: 539 ACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F+ +       DV TY+  +H  ++ G +++  D+   M E  + P+++T+  LI G
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDG 658

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           + R+    +  + L  M +    P   IVSI++  L+
Sbjct: 659 YARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 106/198 (53%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
            +Y E+L+  I P++   N +  G  +I  V  A     ++ + G+  DT TYT  I G 
Sbjct: 180 TVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGH 239

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C+N  +  + E+F  +    C+ +  +Y+ LI GLC++GR+  AL+LF  +        V
Sbjct: 240 CRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTV 299

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            TY+++I+ L   G+  +A +LF +M+E    PNV T+  LI G  + N+  +  ++L +
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSE 359

Query: 197 MKEKNVMPDASIVSIVVD 214
           M EK ++P     + ++D
Sbjct: 360 MSEKGLIPSVVTYNALID 377



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           ALNL++EM  KG +P+V  +  L  GL + ++++ A K+  EM   G+     TY   ID
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK G I ++ E+   +    C  + + Y+ LI GLCK  ++  A+ L + +    L  
Sbjct: 378 GYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            ++TY+ +IHG      ++ A+ L   M EN + P+  T+   I    +     +   L 
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 195 HKMKEKNVMPDASIVSIVVD 214
             +K K V  +  I + ++D
Sbjct: 498 DSVKAKGVKANEVIYTALID 517



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 29/247 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G CK K+++ A +L ++ML+ G+KP VV +  L   + +    + A K+F+ M   
Sbjct: 549 VLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL 608

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT F+      G + E  ++   +       D+  Y+ LIDG  + G    A
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK-------------------------- 154
            +    +        +   SI+I  L ++ +M +                          
Sbjct: 669 FDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLE 728

Query: 155 ---AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
              A  LF  M E+    +V  +G LI GF +     +   L+H MKE+ + P   I + 
Sbjct: 729 YEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNS 788

Query: 212 VVDLLAK 218
           ++D   K
Sbjct: 789 LLDCCCK 795



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 29/246 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF---------------IGLFEIH 45
           +LI+GY +      A +    M+  G KP + I + L                IG+  + 
Sbjct: 654 VLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVS 713

Query: 46  QV--------------ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
            V              E A KLF++M   G   D   Y   I G C+   + E+  L   
Sbjct: 714 NVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHH 773

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           ++          Y+ L+D  CK G    A+ L  ++    L+  + +Y +++ GLY +G 
Sbjct: 774 MKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGS 833

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            +KA  +F  +       + + +  LI G ++ +   +  EL+  M+EK+    A I   
Sbjct: 834 NEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACA 893

Query: 212 VVDLLA 217
            +  LA
Sbjct: 894 ALMRLA 899



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 12/234 (5%)

Query: 19  YSEMLSKGIKPDVV-----IHNTLFIGLFEIHQVERAFKLFDEMQRDG---VAADTRTYT 70
           YS ML+  I+  ++     I  ++      I  V    ++F +M  DG        R Y 
Sbjct: 104 YSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYN 163

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPR 129
             +  L K   I E   ++  L   +   +I  ++ +++G CK G + +  EL+ S + +
Sbjct: 164 TILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNV-VEAELYASKIVQ 222

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             L  D  TY+ +I G   +  +D A+++FL M +     N +++  LIHG       ++
Sbjct: 223 AGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINE 282

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESNV 243
            ++L   M E N  P     ++++  L+ +   + +L  F  +E +E+  E NV
Sbjct: 283 ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF--NEMKEKGCEPNV 334


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CKNK +  A +LYSEM+ KGI P+V  +NTL  G   +  ++ AF L +EM+   
Sbjct: 239 IIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKN 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I ID L K G I E++ LF  ++      +I  Y+ LIDGLCK+  LE A+
Sbjct: 299 INPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAI 358

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  DV +Y+I++  L   G+++ A   F  +       NV T+  +I+G 
Sbjct: 359 ALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGL 418

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNE 220
            +      V++L  KM+ K  MPDA +  +I+  L  K+E
Sbjct: 419 CKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDE 458



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   EI+ AL  + +++++G + D V + TL  GL +  + +   +L  +++   
Sbjct: 169 LIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHS 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT  I  LCKN  + ++ +L+  + +     ++  Y+ LI G C  G L+ A 
Sbjct: 229 VKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAF 288

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  DV T++I+I  L  +G++D+A  LF +M+   + PN++T+ +LI G 
Sbjct: 289 SLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGL 348

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +   + I L  KMKE+ + PD    +I++D L K
Sbjct: 349 CKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCK 385



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 105/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           KNK     ++L+ +  S G+ P++   N L      +  +  AF +F  + + G   D  
Sbjct: 105 KNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAI 164

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T    I GLC  G I  ++     +     +LD  +Y  LI+GLCK+G  +    L   L
Sbjct: 165 TLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKL 224

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  DVV Y+ +IH L  + ++  A DL+ +M    ++PNV T+ TLI+GF  +   
Sbjct: 225 EGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNL 284

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   LL++MK KN+ PD    +I++D L K
Sbjct: 285 KEAFSLLNEMKLKNINPDVYTFNILIDALGK 315



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 90/162 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+   K  +I+ A++L+ EM  K + P++V + +L  GL + H +ERA  L  +M+  
Sbjct: 308 ILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQ 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +YTI +D LCK G +  + + F+ L +    L+++ Y+ +I+GLCK+G     
Sbjct: 368 GIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDV 427

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           ++L   +     + D +T+  +I  L+   + DKA     +M
Sbjct: 428 MDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREM 469



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 69/148 (46%)

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           +  L KN + +  + LF+  +      ++   + LI+  C    +  A  +F ++ +   
Sbjct: 100 LSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGY 159

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             D +T + +I GL   G++ +A      +       + +++GTLI+G  +  E   V  
Sbjct: 160 HPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVAR 219

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           LL K++  +V PD  + + ++  L KN+
Sbjct: 220 LLRKLEGHSVKPDVVMYTTIIHCLCKNK 247



 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK       ++L S+M  KG  PD +   T+   LFE  + ++A K   EM   
Sbjct: 413 VMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIAR 472

Query: 61  GV 62
           G+
Sbjct: 473 GL 474


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 114/197 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CKNK ++ A+ L+ EM  K + P+ V +++L  GL +  ++   + L DE+   
Sbjct: 339 VMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNR 398

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+  TY   ++GLCKN  + +++ L   ++    + D+  Y+ L+DGLCK+GRL+ A
Sbjct: 399 GQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDA 458

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  L       ++  Y++MI+GL  +G  D+A  L   ME+N   P+ +T+ TLI  
Sbjct: 459 QRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISA 518

Query: 181 FIRINEPSKVIELLHKM 197
             + N+  K ++LL +M
Sbjct: 519 LFKNNKNGKAVKLLREM 535



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  E++ A ++ S M+ +G++P+VV + +L  G F + +V +A  +F+ +   
Sbjct: 269 ILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLR 328

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  +Y++ I+GLCKN  + E+V+LF+ + +     +   YS LIDGLCKSGR+   
Sbjct: 329 GVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDV 388

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +      A+++TY+ +++GL  + Q+DKA  L   M++  + P++ T+ TL+ G
Sbjct: 389 WDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDG 448

Query: 181 FI---RINEPSKV--------------------------------IELLHKMKEKNVMPD 205
                R+ +  ++                                + LL +M++   MPD
Sbjct: 449 LCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPD 508

Query: 206 ASIVSIVVDLLAKN 219
           A     ++  L KN
Sbjct: 509 AVTYETLISALFKN 522



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +CK+K +  A +LYSEM+ K I P+VV  N+L  G   + Q++ A  L +EM  + 
Sbjct: 200 IIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNN 259

Query: 62  VAADTRTYTIFIDGLCKNG-------------------------------YIVESVE--- 87
           V  +  T+ I IDGLCK G                               ++V+ V    
Sbjct: 260 VNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAK 319

Query: 88  -LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F T+ +     ++ +YS +I+GLCK+  ++ A++LF  +    +  + VTYS +I GL
Sbjct: 320 HVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGL 379

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++    DL  ++       N+IT+ +L++G  + ++  K I LL KMK++ + PD 
Sbjct: 380 CKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDM 439

Query: 207 SIVSIVVDLLAKN 219
           S  + +VD L KN
Sbjct: 440 STYTTLVDGLCKN 452



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 1/205 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++   +M  KGI+P++   N L      + Q+  AF +  ++ + G   DT T    + 
Sbjct: 72  AISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLR 131

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV- 133
           GLC NG + E++     +   +  LD  +Y  LI+GLCKSG    AL+L   +   +LV 
Sbjct: 132 GLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVR 191

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            DV+ Y+ +I     D  +  A+DL+ +M    + PNV+TF +LI+GF  + +  + + L
Sbjct: 192 PDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGL 251

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAK 218
           L++M   NV P+    +I++D L K
Sbjct: 252 LNEMSLNNVNPNVYTFNILIDGLCK 276



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C N +++ ALN +  ++ K    D V + TL  GL +  +   A +L  +++  G
Sbjct: 129 LLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIE--G 186

Query: 62  ---VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
              V  D   YT  ID  CK+  ++++ +L+  + + K   ++  ++ LI G C  G+L+
Sbjct: 187 LLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLK 246

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ L + +    +  +V T++I+I GL  +G++ KA  +   M +  V PNV+T+ +L+
Sbjct: 247 EAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLM 306

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            G+  + E +K   + + +  + V P+    S++++ L KN++
Sbjct: 307 DGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKM 349



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +    ++  A ++ +++L  G +PD V  NTL  GL    +V+ A    D + R 
Sbjct: 93  ILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRK 152

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEI 119
               D  +Y   I+GLCK+G    +++L R +  +L    D+  Y+ +ID  CK   +  
Sbjct: 153 RFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVID 212

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +L+  +    +  +VVT++ +I+G    GQ+ +A  L  +M  N V PNV TF  LI 
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILID 272

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  +  E  K   +L  M ++ V P+    + ++D
Sbjct: 273 GLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMD 307



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LING CK+ E   AL L  ++  +G   ++PDV+++  +     +   V  A+ L+ EM 
Sbjct: 164 LINGLCKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMI 221

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
              +  +  T+   I G C  G + E+V L   + +     ++  ++ LIDGLCK G ++
Sbjct: 222 VKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVK 281

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   + +  +  +VVTY+ ++ G +   +++KA  +F  +    V PNV ++  +I
Sbjct: 282 KATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMI 341

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +G  +     + ++L  +M  KN+ P+    S ++D L K+
Sbjct: 342 NGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKS 382


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 114/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +CK  +++ A  L+  M  +G  PD+  +N +  G    ++++ A +L + M   
Sbjct: 381 LMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA 440

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   + GLCK   + E+ E++  LR     LD+   S LIDGLCKS RL+ A
Sbjct: 441 GCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDA 500

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + R     DVV Y+I+IHG     Q+DK+   F +M +    P VIT+  +I  
Sbjct: 501 EKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDK 560

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +         LL  M E+ V PDA + + V+D L K++
Sbjct: 561 LCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSD 600



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL---------FIGLF--------- 42
           ILI+GYCK +  +    L  EM+  G +P+ + +NTL         +I  F         
Sbjct: 311 ILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRR 370

Query: 43  -----------------EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                            ++ Q++ A++LF  M   G   D  TY I I G C+   I ++
Sbjct: 371 DCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA 430

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +L   +    C  D+  Y+ ++ GLCK+ +++ A E++  L  G    DVVT S +I G
Sbjct: 431 RQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDG 490

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++D A  L  +ME N  AP+V+ +  LIHGF + ++  K +    +M +K  +P 
Sbjct: 491 LCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 550

Query: 206 ASIVSIVVDLLAKN 219
               SIV+D L K+
Sbjct: 551 VITYSIVIDKLCKS 564



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK++ ++ A  L  EM   G  PDVV +  L  G  +  Q++++   F EM   G
Sbjct: 487 LIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKG 546

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY+I ID LCK+  + +   L +T+       D   Y+ +IDGLCKS   + A 
Sbjct: 547 CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAY 606

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  + +      VVTY++++  L    ++D+A  L   ME +   P+ +T+ ++  GF
Sbjct: 607 ELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGF 666

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E  K   L   MK +   P   + S+++  L   E
Sbjct: 667 WKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEE 705



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G C+   I+ A  L   M   G  PDVV +N++  GL +  QV+ A+++++ ++  
Sbjct: 416 IMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG 475

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T +  IDGLCK+  + ++ +L R +       D+ AY+ LI G CK+ +L+ +
Sbjct: 476 GYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKS 535

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  F  +     V  V+TYSI+I  L    ++     L   M E  V P+ I + ++I G
Sbjct: 536 LAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDG 595

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +   +  EL   MK+    P     +++VD L K
Sbjct: 596 LCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK  +++ A  +Y  + + G   DVV  +TL  GL +  +++ A KL  EM+R+G
Sbjct: 452 IVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 511

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D   YTI I G CK   + +S+  F  +    C   +  YS +ID LCKS R+    
Sbjct: 512 SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGC 571

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L  + L RGV   D + Y+ +I GL      D+A++L+  M++   AP V+T+  L+  
Sbjct: 572 MLLKTMLERGV-TPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDK 630

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +++   + I LL  M+    +PD    + V D   K+
Sbjct: 631 LCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKS 669



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + + K+ + A +L+         PD + ++TL  G  +    ++A++L DEM++ G
Sbjct: 138 LLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 197

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I GLC NG +  ++  +R ++   C   +  Y+ L+D LCKS R+  A 
Sbjct: 198 IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RNCAPSVITYTILVDALCKSARISDAS 256

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       +VVTY+ +I+G    G MD+A  LF  M EN+ +P+V T+  LI G+
Sbjct: 257 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 316

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   P    +LL +M +    P+    + ++D L K+
Sbjct: 317 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 354



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK+  I  A  +  +M+  G  P+VV +NTL  G  ++  ++ A  LF++M  +
Sbjct: 241 ILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLEN 300

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + D  TY I IDG CK     +  +L + +    CE +   Y+ L+D L KSG+   A
Sbjct: 301 SCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDA 360

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R        T+++MI      GQ+D A++LF  M +    P++ T+  +I G
Sbjct: 361 FNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISG 420

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N      +LL +M E    PD    + +V  L K
Sbjct: 421 ACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 458



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK ++ + A  L  EM  +GI P   ++NT+  GL +  +V+ A   + +MQR+ 
Sbjct: 173 LINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN- 231

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A    TYTI +D LCK+  I ++  +   +    C  ++  Y+ LI+G CK G ++ A+
Sbjct: 232 CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAV 291

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +       DV TY+I+I G     +      L  +M +    PN IT+ TL+   
Sbjct: 292 VLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSL 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +      L   M  ++  P     ++++D+  K
Sbjct: 352 VKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 388



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 110/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK   ++ A+ L+++ML     PDV  +N L  G  +  + +   KL  EM + G
Sbjct: 277 LINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +D L K+G  +++  L + +    C+     ++ +ID  CK G+L++A 
Sbjct: 337 CEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAY 396

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +     + D+ TY+IMI G     ++D A  L   M E    P+V+T+ +++ G 
Sbjct: 397 ELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 456

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + ++  +  E+   ++      D    S ++D L K+ 
Sbjct: 457 CKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSR 495



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 101/208 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK  +++ +L  +SEML KG  P V+ ++ +   L +  +V     L   M   
Sbjct: 521 ILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLER 580

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   YT  IDGLCK+    E+ EL++ ++   C   +  Y+ L+D LCK  RL+ A
Sbjct: 581 GVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEA 640

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +     + D VTY+ +  G +   + DKA  LF  M+    +P    +  L+  
Sbjct: 641 IHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTK 700

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
            +   +  + +E+  +  E     D  I
Sbjct: 701 LVAEEKMDQAMEIWEEALEAGADVDPEI 728



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 1/195 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G K      N L        + + A+ LF   +    + D+ TY+  I+G CK     ++
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             L   +           Y+ +I GLC +GR++ AL  +  + R      V+TY+I++  
Sbjct: 187 YRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNC-APSVITYTILVDA 245

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++  A  +  DM E   APNV+T+ TLI+GF ++    + + L ++M E +  PD
Sbjct: 246 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 305

Query: 206 ASIVSIVVDLLAKNE 220
               +I++D   K E
Sbjct: 306 VFTYNILIDGYCKQE 320


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 10/211 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C +  ++ A +++  M+SK   P+VV +NTL  G  +  +++   +LF EM + G
Sbjct: 371 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG 430

Query: 62  VAADTRTYTIFIDGL-----CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           +  +T TYT  I G      C N  +V     F+ +       +I  Y+ L+DGLCK+G+
Sbjct: 431 LVGNTVTYTTLIHGFFQARDCDNAQMV-----FKQMVSDGVHPNIMTYNTLLDGLCKNGK 485

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           LE A+ +F  L R  +   + TY+IMI G+   G+++   DLF  +    V P+VI + T
Sbjct: 486 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNT 545

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
           +I GF R     +   L  KM+E   +PD+ 
Sbjct: 546 MISGFCRKGLKEEADALFRKMREDGPLPDSG 576



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 13/237 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC  K I  A+ L  +M+  G +PD +   TL  GLF  ++   A  L D M + G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + ++GLCK G I  +  L   +   K E ++  YS +ID LCK    + AL
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 280

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +V+TYS +I  L N  +   A  L  DM E  + PNV+TF  LI  F
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           ++  +  +  +L  +M ++++ PD    S +++              F +H+R +E 
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 384



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  +I  AL L  +M+  G +P +V  ++L  G     ++  A  L D+M   
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  I GL  +    E+V L   +    C+ ++  Y  +++GLCK G +++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    + A+VV YS +I  L      D A +LF +ME   V PNVIT+ +LI  
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + P+    + ++D   K
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C  +    A  L S+M+ + I P+VV  N L     +  ++  A KL+DEM +  
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I+G C +  + E+  +F  +    C  ++  Y+ LI+G CK+ R++  +
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + +  LV + VTY+ +IHG +     D A  +F  M  + V PN++T+ TL+ G 
Sbjct: 421 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K + +   ++   + P     +I+++ + K
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 517



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK +  + ALNL++EM +KG++P+V+ +++L   L    +   A +L  +M    
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   ID   K G +VE+ +L+  +     + DI  YS LI+G C   RL+ A 
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       +VVTY+ +I+G     ++D+  +LF +M +  +  N +T+ TLIHGF
Sbjct: 386 HMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +      +  +M    V P+    + ++D L KN
Sbjct: 446 FQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 483



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 112/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  +I+ A NL ++M +  I+ +VVI++T+   L +    + A  LF EM+  
Sbjct: 230 VVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY+  I  LC      ++  L   +   K   ++  ++ LID   K G+L  A
Sbjct: 290 GVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA 349

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  + +  +  D+ TYS +I+G     ++D+A  +F  M      PNV+T+ TLI+G
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +     + +EL  +M ++ ++ +    + ++
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 1/235 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL NG   + +++ A+ L+  M+     P +   N L   + ++ + +    L ++MQR 
Sbjct: 56  ILRNGL-HSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL 114

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY I I+  C+   I  ++ L   +  L  E  I   S L++G C   R+  A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       D +T++ +IHGL+   +  +A  L   M +    PN++T+G +++G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +  +      LL+KM+   +  +  I S V+D L K     ++L  FT  E +
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G CK  ++E   +L+  +  KG+KPDV+I+NT+  G       E A  LF +M+ D
Sbjct: 510 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRED 569

Query: 61  GVAADTRT 68
           G   D+ T
Sbjct: 570 GPLPDSGT 577


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 118/215 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  ++E A  ++ EM+ +G+ PD V +NTL  G  +      A  +F EM + G
Sbjct: 266 MVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  I  +CK G +  +V L R +R    +++   ++ LIDG CK G L+ AL
Sbjct: 326 IMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  +   VV Y+ +I+G    G+MD+A +L  +ME   + P+V+T+ T+I  +
Sbjct: 386 LAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +  +     EL  +M EK V+PDA   S ++ +L
Sbjct: 446 CKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 480



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  + +  E++GA  L   M   G+KP++V  N++  G+ +  ++E A K+FDEM R+G
Sbjct: 231 LVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREG 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  +Y   + G CK G   E++ +F  +       D+  ++ LI  +CK+G LE A+
Sbjct: 291 LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAV 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  + VT++ +I G    G +D A      M++  + P+V+ +  LI+G+
Sbjct: 351 TLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGY 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +    +  ELLH+M+ K + PD    S ++    KN
Sbjct: 411 CMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKN 448



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 107/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYCK      AL++++EM  KGI PDVV   +L   + +   +ERA  L  +M+  G
Sbjct: 301 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERG 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G++ +++   R ++  + +  +  Y+ LI+G C  GR++ A 
Sbjct: 361 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEAR 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  DVVTYS +I     +     A +L   M E  V P+ IT+ +LI   
Sbjct: 421 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                 S    L   M +  + PD    + ++D
Sbjct: 481 CGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 513



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 103/208 (49%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC    ++ A  L  EM +KG+KPDVV ++T+     +      AF+L  +M   G
Sbjct: 406 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  I  LC    + ++  LF+ +  L  + D   Y+ LIDG CK G +E AL
Sbjct: 466 VLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESAL 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  ++ DVVTYS++I+GL    +  +A  L   +      P    +  L+H  
Sbjct: 526 SLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMH-C 584

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
            R  E   V+ LL     K +M +A  V
Sbjct: 585 CRKAELKSVLALLKGFCMKGLMNEADKV 612



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 103/193 (53%), Gaps = 1/193 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P V+ +N + + L +   +  A + FD M  DGVA +  TY I +  LC  G+  E+
Sbjct: 151 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + + R +R   C  ++  Y+ L+    ++G ++ A  L   +  G L  ++VT++ M++G
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNG 269

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +   G+M+ A  +F +M    +AP+ +++ TL+ G+ +     + + +  +M +K +MPD
Sbjct: 270 MCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329

Query: 206 ASIVSIVVDLLAK 218
               + ++ ++ K
Sbjct: 330 VVTFTSLIHVMCK 342



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 107/264 (40%), Gaps = 50/264 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YCKN +   A  L  +ML KG+ PD + +++L   L    ++  A  LF  M + G
Sbjct: 441 IISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLG 500

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
           +  D  TYT  IDG CK G +  ++ L   +       D+  YS LI+GL KS R     
Sbjct: 501 LQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQ 560

Query: 118 EIALELFHSLP-------------------RGVLV-------------ADVV-------- 137
           ++  +L+H  P                   + VL              AD V        
Sbjct: 561 QLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRN 620

Query: 138 ------TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                  YS++IHG    G + KA      M +   APN  +  +LI G        +  
Sbjct: 621 WNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEAD 680

Query: 192 ELLHKMKEKNVMPDASIVSIVVDL 215
           +++ ++     + DA     ++DL
Sbjct: 681 QVIQQLLNYCSLADAEASKALIDL 704



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 25/224 (11%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKLFDEM 57
           LI+G+CK   +E AL+L+ +M+  G+ PDVV ++ L  GL +  +   A    FKL+ E 
Sbjct: 511 LIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE- 569

Query: 58  QRDGVAADTR--------------TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA 103
             D + A+T+              +    + G C  G + E+ ++++++      LD   
Sbjct: 570 --DPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSV 627

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           YS LI G C++G +  AL     + +G    +  +   +I GL+ +G + +A  +   + 
Sbjct: 628 YSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL 687

Query: 164 ENAVAPNVITFGTLIHGFIRINEPS--KVIELLHKMKEKNVMPD 205
                 +      LI   + +NE +   V+++LH M +  ++P 
Sbjct: 688 NYCSLADAEASKALID--LNLNEGNVDAVLDVLHGMAKDGLLPS 729


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 111/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+NK ++ A  ++  M  KG + + V +  L  GL E  ++  A KLF +M  D 
Sbjct: 235 LILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDN 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                RTYT+ I  L  +G  VE++ LF  ++   CE ++  Y+ LIDGLCK  +++ A 
Sbjct: 295 CCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEAR 354

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    L+  VVTY+ +I G   +G +D A ++   ME N+  PN  T+  LI G 
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  K + LL+KM E+ + P 
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPS 438



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 110/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK +++  A+ L ++ML + + P ++ +N+L  G  +++ +E A++L   M  +G
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++FID LCK G + E+  LF +++    + +   Y+ LIDG CK G++++A 
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAY 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + +  TY+++I GL  + +M +A  L   M    V P V+T+  LI   
Sbjct: 530 SLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM 589

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++       +++ + M      PD
Sbjct: 590 LKDGAFDHALKVFNHMVSLGYQPD 613



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+   I  AL L+++M      P V  +  L   L    +   A  LF+EM+  G
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT+ IDGLCK   + E+ ++   +        +  Y+ LIDG CK G ++ A 
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +       +  TY+ +I GL    ++ KA  L   M E  ++P++IT+ +LIHG 
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++N+      LL  M E  ++PD    S+ +D L K
Sbjct: 450 CKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 113/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK  +++ A  + SEM  KG+ P VV +N L  G  +   ++ AF++ D M+ +
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN 398

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +TRTY   I GLCK   + +++ L   +   K    +  Y+ LI G CK   LE A
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESA 458

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    LV D  TYS+ I  L  +G++++A  LF  ++   V  N + +  LI G
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + ++ +      LL +M     +P++   +++++ L K +
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEK 558



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 122/241 (50%), Gaps = 8/241 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+  CK   +E A  L+  + +KG+K + VI+  L  G  ++ +++ A+ L + M  D
Sbjct: 479 VFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLND 538

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               ++ TY + I+GLCK   + E+  L   +  +  +  +  Y+ LI  + K G  + A
Sbjct: 539 ACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F+ +       DV TY+  +H  ++ G +++  D+   M E  + P+++T+  LI G
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDG 658

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA--------KNEISLNSLPSFTVH 232
           + R+    +  + L  M +    P   IVSI++  L+        ++EI ++S+ +   +
Sbjct: 659 YARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEY 718

Query: 233 E 233
           E
Sbjct: 719 E 719



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 107/202 (52%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
            +Y E+L+  I P++   N +  G  +I  V  A     ++ + G+  DT TYT  I G 
Sbjct: 180 TVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGH 239

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C+N  +  + E+F  +    C+ +  +Y+ LI GLC++GR+  AL+LF  +        V
Sbjct: 240 CRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTV 299

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            TY+++I+ L   G+  +A +LF +M+E    PNV T+  LI G  + N+  +  ++L +
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSE 359

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           M EK ++P     + ++D   K
Sbjct: 360 MSEKGLIPSVVTYNALIDGYCK 381



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 100/204 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           ALNL++EM  KG +P+V  +  L  GL + ++++ A K+  EM   G+     TY   ID
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK G I ++ E+   +    C  + + Y+ LI GLCK  ++  A+ L + +    L  
Sbjct: 378 GYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            ++TY+ +IHG      ++ A+ L   M EN + P+  T+   I    +     +   L 
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
             +K K V  +  I + ++D   K
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCK 521



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 18/237 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF---------------IGLFEIH 45
           +LI+GY +      A +    M+  G KP + I + L                IG+  + 
Sbjct: 654 VLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVS 713

Query: 46  ---QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
              + E A KLF++M   G   D   Y   I G C+   + E+  L   ++         
Sbjct: 714 NTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSED 773

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            Y+ L+D  CK G    A+ L  ++    L+  + +Y +++ GLY +G  +KA  +F  +
Sbjct: 774 IYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGL 833

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  + + +  LI G ++ +   +  EL+  M+EK   P+    S++++ L + 
Sbjct: 834 LSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLERT 890



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 12/234 (5%)

Query: 19  YSEMLSKGIKPDVV-----IHNTLFIGLFEIHQVERAFKLFDEMQRDG---VAADTRTYT 70
           YS ML+  I+  ++     I  ++      I  V    ++F +M  DG        R Y 
Sbjct: 104 YSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYN 163

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPR 129
             +  L K   I E   ++  L   +   +I  ++ +++G CK G + +  EL+ S + +
Sbjct: 164 TILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNV-VEAELYASKIVQ 222

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             L  D  TY+ +I G   +  +D A+++FL M +     N +++  LIHG       ++
Sbjct: 223 AGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINE 282

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESNV 243
            ++L   M E N  P     ++++  L+ +   + +L  F  +E +E+  E NV
Sbjct: 283 ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF--NEMKEKGCEPNV 334


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK+ +I  AL+++ EM SKG KPD+   N+L  GL  + ++E A  L+ +M  +G
Sbjct: 458 LISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEG 517

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A++ T+   I    + G I E+++L   +    C LD   Y+ LI  LCK+G +E  L
Sbjct: 518 VIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGL 577

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R  L   ++T +I+I+G    G++  A +   DM     +P+++T+ +LI+G 
Sbjct: 578 GLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL 637

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + L  K++ + + PD+   + ++  L +
Sbjct: 638 CKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCR 674



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEI-EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+NG+ +N  + E    +Y +M++ G  PDV   +TL  GL +      A +L ++M   
Sbjct: 352 LVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAK 411

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYTI IDG CK G + E+  + R +      L+   Y+ LI  LCK G++  A
Sbjct: 412 GCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEA 471

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +       D+ T++ +I GL    +M+ A  L+ DM    V  N +TF TLIH 
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHA 531

Query: 181 FIRINEPSKVIELLHKM 197
           F+R  E  + ++L++ M
Sbjct: 532 FLRRGEIQEALKLVNDM 548



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 93/180 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + +  EI+ AL L ++ML +G   D + +N L   L +   VE+   LF+EM R G
Sbjct: 528 LIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKG 587

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T  I I+G C  G +  ++E  R +       DI  Y+ LI+GLCK GR++ AL
Sbjct: 588 LTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEAL 647

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L    +  D +TY+ +I  L  +G  D A  L     EN   PN +T+  L++ F
Sbjct: 648 NLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNF 707



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 107/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK      AL L ++M +KG KP++  +  L  G  +  Q+E A  +  EM   G
Sbjct: 388 LVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKG 447

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +T  Y   I  LCK+G I E++++F  +    C+ DI  ++ LI GLC+   +E AL
Sbjct: 448 FSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDAL 507

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    ++A+ VT++ +IH     G++ +A  L  DM       + IT+  LI   
Sbjct: 508 ALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKAL 567

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     K + L  +M  K + P     +I+++
Sbjct: 568 CKTGAVEKGLGLFEEMIRKGLTPSIITCNILIN 600



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQRD 60
           L++G CK   I+ A      +LSK   P+VV  NTL  G     ++  A    +D+M  +
Sbjct: 321 LMHGLCKTCRIDEA----QALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINN 376

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T++  ++GLCK G    ++EL   +    C+ ++  Y+ LIDG CK G+LE A
Sbjct: 377 GYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEA 436

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       + V Y+ +I  L   G++ +A D+F +M      P++ TF +LI G
Sbjct: 437 GLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFG 496

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEIS 222
             R++E    + L   M  + V+ ++ +  +++   L + EI 
Sbjct: 497 LCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQ 539



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++   C   E++ A  L  +M   G  P+ +I+ TL   L +  +V+ A KL +EM   
Sbjct: 215 LVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLM 274

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   I G C+   ++E  +L   + +     +   Y  L+ GLCK+ R++ A
Sbjct: 275 GCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEA 334

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIH 179
             L   +P      +VV ++ +++G   +G++++A     D M  N   P+V TF TL++
Sbjct: 335 QALLSKVPG----PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVN 390

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +       +EL++ M  K   P+ +  +I++D   K
Sbjct: 391 GLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCK 429



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 13/221 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C +     A N++ +MLSKG+ P+      +   L  +++V+ A  L  +M + 
Sbjct: 184 VLVVGNCPSV----ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKH 239

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++  Y   ID L K   + E+++L   + ++ C  D+  ++ +I G C+  R+   
Sbjct: 240 GCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEG 299

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       + +TY  ++HGL    ++D+A  L          PNV+ F TL++G
Sbjct: 300 AKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALL----SKVPGPNVVHFNTLVNG 355

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F+   R+NE +  +    KM     +PD    S +V+ L K
Sbjct: 356 FVRNGRLNEATAFV--YDKMINNGYVPDVFTFSTLVNGLCK 394



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+C   ++  AL    +M+ +G  PD+V +N+L  GL +  +++ A  LF+++Q +
Sbjct: 597 ILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAE 656

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D+ TY   I  LC+ G
Sbjct: 657 GIQPDSITYNTLICWLCREG 676



 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 50  AFKLFD----EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAY 104
            FK+ D    +M+ +G+      + + +    + G   ++  L   ++ +  CE   ++Y
Sbjct: 119 GFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSY 178

Query: 105 SCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           + ++D L       +A  +F+  L +GV   D  T+ +++  L    ++D A  L  DM 
Sbjct: 179 NVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDY-TFGLVMKALCMVNEVDNACLLLRDMT 237

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           ++   PN + + TLI    + +   + ++LL +M      PD +  + V+
Sbjct: 238 KHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVI 287



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A ++F DM    V+PN  TFG ++     +NE      LL  M +   +P++ I   ++D
Sbjct: 194 ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLID 253

Query: 215 LLAKNE 220
            L+K +
Sbjct: 254 ALSKRD 259


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  ++E A  ++ EM+ +G+ PD V +NTL  G  +      A  +F EM + G
Sbjct: 226 MVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  I  +CK G +  +V L R +R    +++   ++ LIDG CK G L+ AL
Sbjct: 286 IMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  +   VV Y+ +I+G    G+MD+A +L  +ME   + P+V+T+ T+I  +
Sbjct: 346 LAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +     EL  +M EK V+PDA   S ++ +L + +
Sbjct: 406 CKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEK 444



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  + +  E++GA  L   ML  G+KP++V  N++  G+ +  ++E A K+FDEM R+G
Sbjct: 191 LVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREG 250

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  +Y   + G CK G   E++ +F  +       D+  ++ LI  +CK+G LE A+
Sbjct: 251 LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAV 310

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  + VT++ +I G    G +D A      M +  + P+V+ +  LI+G+
Sbjct: 311 TLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGY 370

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +    +  ELLH+M+ K + PD    S ++    KN
Sbjct: 371 CMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKN 408



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 106/213 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYCK      AL++++EM  KGI PDVV   +L   + +   +E A  L  +M+  G
Sbjct: 261 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERG 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G++ +++   R +R  + +  +  Y+ LI+G C  GR++ A 
Sbjct: 321 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEAR 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  DVVTYS +I     +     A +L   M E  V P+ IT+ +LI   
Sbjct: 381 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                 S    L   M +  + PD    + ++D
Sbjct: 441 CEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 473



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC    ++ A  L  EM +KG+KPDVV ++T+     +      AF+L  +M   G
Sbjct: 366 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  I  LC+   + ++  LF+ +  L  + D   Y+ LIDG CK G +E AL
Sbjct: 426 VLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERAL 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  ++ DVVTYS++I+GL    +  +A  L   +      P    +  L+H  
Sbjct: 486 SLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMH-C 544

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
            R  E   V+ LL     K +M +A  V
Sbjct: 545 CRKAELKSVLALLKGFCMKGLMNEADKV 572



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 103/193 (53%), Gaps = 1/193 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P V+ +N + + L +   +  A + FD M  DGVA +  TY I I  LC  G+  E+
Sbjct: 111 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + + R +R   C  ++  Y+ L+    ++G ++ A  L   +  G L  ++VT++ M++G
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +   G+M+ A  +F +M    +AP+ +++ TL+ G+ +     + + +  +M +K +MPD
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 206 ASIVSIVVDLLAK 218
               + ++ ++ K
Sbjct: 290 VVTFTSLIHVMCK 302



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 100/210 (47%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           +  +  A   +  MLS G+ P+V  +N L   L      + A  +  +M+  G   +  T
Sbjct: 128 DASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVT 187

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y   +    + G +  +  L   +     + ++  ++ +++G+CK+G++E A ++F  + 
Sbjct: 188 YNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMM 247

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           R  L  D V+Y+ ++ G    G   +A  +F +M +  + P+V+TF +LIH   +     
Sbjct: 248 REGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLE 307

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + L+ +M+E+ +  +    + ++D   K
Sbjct: 308 WAVTLVRQMRERGLQMNEVTFTALIDGFCK 337



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 108/264 (40%), Gaps = 50/264 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YCKN +   A  L  +ML KG+ PD + +++L   L E  ++  A  LF  M + G
Sbjct: 401 IISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
           +  D  TYT  IDG CK G +  ++ L   +       D+  YS LI+GL KS R     
Sbjct: 461 LQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQ 520

Query: 118 EIALELFHSLP-------------------RGVLV-------------ADVV-------- 137
           ++  +L+H  P                   + VL              AD V        
Sbjct: 521 QLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRN 580

Query: 138 ------TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                  YS++IHG    G + KA      M +   APN  +  +LI G        +  
Sbjct: 581 WNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEAD 640

Query: 192 ELLHKMKEKNVMPDASIVSIVVDL 215
           +++ ++     + DA     ++DL
Sbjct: 641 QVIQQLLNCCSLADAEASKALIDL 664



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 23/223 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKLFDE- 56
           LI+G+CK   +E AL+L+ +M+  G+ PDVV ++ L  GL +  +   A    FKL+ E 
Sbjct: 471 LIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEE 530

Query: 57  -----MQRDGV-----AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
                 + D +      A+ ++    + G C  G + E+ ++++++      LD   YS 
Sbjct: 531 PIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSV 590

Query: 107 LIDGLCKSGRLEIALELFHS--LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           LI G C++G +  AL  FH   L RG       T S+ I GL+ +G + +A  +   +  
Sbjct: 591 LIHGHCRAGNVMKALS-FHKQMLQRGFAPNSTSTISL-IRGLFENGMVVEADQVIQQLLN 648

Query: 165 NAVAPNVITFGTLIHGFIRINEPS--KVIELLHKMKEKNVMPD 205
                +      LI   + +NE +   V+++LH M +  ++P 
Sbjct: 649 CCSLADAEASKALID--LNLNEGNVDAVLDVLHGMAKDGLLPS 689



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+C+   +  AL+ + +ML +G  P+     +L  GLFE   V  A ++  ++   
Sbjct: 590 VLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNC 649

Query: 61  GVAADTRTYTIFID 74
              AD       ID
Sbjct: 650 CSLADAEASKALID 663


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 131/256 (51%), Gaps = 36/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK  ++  A N+ + M+ K +K DVV +N+L  G   + QV +A  LF+ M + 
Sbjct: 273 ILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQR 332

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +Y+I I+G CK   + E+++LF  +   +   ++  Y+ L+DGLCKSGR   A
Sbjct: 333 GVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCA 392

Query: 121 LELFHSL-----PRGVLV------------------------------ADVVTYSIMIHG 145
           LEL   +     P  ++                                D+ TY+++I+G
Sbjct: 393 LELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLING 452

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++D A  +F D+     +PN+ T+ +LI+GF       + + +L KMK+   +P+
Sbjct: 453 LCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPN 512

Query: 206 ASIVSIVV-DLLAKNE 220
           A    I++  L  K+E
Sbjct: 513 AITYEILIHSLFEKDE 528



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 121/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+K +  A +LY EM+SK I PDVV +++L  G   + +++ A  LF+ M  D 
Sbjct: 204 IIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDN 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T++I IDG CK G + E+  +   +     +LD+  Y+ L+DG C   ++  A 
Sbjct: 264 INPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAK 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ + +  +  DV +YSIMI+G      +D+A  LF +M    + PNV+T+ +L+ G 
Sbjct: 324 SLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGL 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S  +EL+ +M ++    +    + ++D + KN
Sbjct: 384 CKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKN 421



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 114/203 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K ++ A+ L+ EM  K I P+VV +N+L  GL +  +   A +L DEM   
Sbjct: 343 IMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDR 402

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  ++  TY   +D +CKN ++ +++ L   ++    + DI  Y+ LI+GLCK GRL+ A
Sbjct: 403 GQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDA 462

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       ++ TY+ +I+G  N G  D+   +   M++N   PN IT+  LIH 
Sbjct: 463 QKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHS 522

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               +E  K  +LL +M  + ++
Sbjct: 523 LFEKDENDKAEKLLREMIARGLL 545



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 114/211 (54%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K+ + AL+L  +M   GIKPD +  N L     ++  ++ +F +F ++ + G   D  
Sbjct: 70  KAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAV 129

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+TI I GLC  G + +++     +     +LD  +Y  LI+GLC+ G  + A++L   +
Sbjct: 130 TFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRV 189

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  +VV YS +I  +  D  ++ A DL+ +M    ++P+V+T+ +LI GF  + + 
Sbjct: 190 DGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKL 249

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++L ++M   N+ P+    SI++D   K
Sbjct: 250 KYAVDLFNRMISDNINPNVYTFSILIDGFCK 280



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  E + A+ L   +  K ++P+VV+++T+   + +   V  AF L+ EM    
Sbjct: 169 LINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKR 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I G C  G +  +V+LF  +       ++  +S LIDG CK G++  A 
Sbjct: 229 ISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAK 288

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DVVTY+ ++ G     Q++KA  LF  M +  V P+V ++  +I+GF
Sbjct: 289 NVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGF 348

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I    + ++L  +M  K + P+    + +VD L K+
Sbjct: 349 CKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKS 386



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 117/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C   E+  AL  + +++++G + D V + TL  GL  + + + A +L   +   
Sbjct: 133 ILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGK 192

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +   Y+  ID +CK+  + ++ +L+  +   +   D+  YS LI G C  G+L+ A
Sbjct: 193 LVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYA 252

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF+ +    +  +V T+SI+I G   +G++ +A ++   M +  V  +V+T+ +L+ G
Sbjct: 253 VDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDG 312

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  + + +K   L + M ++ V PD    SI+++   K
Sbjct: 313 YCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCK 350



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N + +   I+ + ++++++L KG  PD V    L  GL    +V +A    D++   
Sbjct: 98  LLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQ 157

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLC+ G    +V+L R +       ++  YS +ID +CK   +  A
Sbjct: 158 GFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  DVVTYS +I G    G++  A DLF  M  + + PNV TF  LI G
Sbjct: 218 FDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDG 277

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  +   +L  M +KNV  D    + ++D
Sbjct: 278 FCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 61/115 (53%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L++   + G ++ +  +F  + +     D VT++I+I GL   G++ KA      +    
Sbjct: 99  LMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQG 158

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
              + +++GTLI+G  R+ E    ++LL ++  K V P+  + S ++D + K+++
Sbjct: 159 FQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKL 213


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   +E A++L  +++  G  PDVV + +L  GL +  +   A+KLF EM   G
Sbjct: 300 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRG 359

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT  YT  I GL + G I ++  +++T+    C  D+   S +IDGL K+GR+  A+
Sbjct: 360 LALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAV 419

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F S+    L  + V YS +IHGL    +MD A ++   M++    P+ IT+  LI G 
Sbjct: 420 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 479

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +         +M E    PD    +I++  L K
Sbjct: 480 CKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCK 516



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N   KNK+I+ A+ L  ++ + G  P +  +N L  GL ++ ++E A  L  ++  +G
Sbjct: 265 IVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 324

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  IDGL K     E+ +LF+ +      LD   Y+ LI GL ++G++  A 
Sbjct: 325 CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQAS 384

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++ ++     V DVVT S MI GL   G++  A  +F  ME   +APN + +  LIHG 
Sbjct: 385 SVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 444

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +    +E+L +MK+    PD    +I++D L K+
Sbjct: 445 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 482



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K K    A  L+ EM S+G+  D V +  L  GL +  ++ +A  ++  M   G
Sbjct: 335 LIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHG 394

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T +  IDGL K G I  +V +F+++       +   YS LI GLCK+ +++ AL
Sbjct: 395 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 454

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +     D +TY+I+I GL   G ++ A   F +M E    P+V T+  LI G 
Sbjct: 455 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGL 514

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +         +L  M          + S +VD L K+
Sbjct: 515 CKAGNTDAACGVLDDMSSSRF-----VYSSLVDGLCKS 547



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK+ ++  A++ + E + + +       + L  GL +   + +A  L  E   +
Sbjct: 195 LVLHGLCKSGKVLAAMDHF-EAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTN 253

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  ++ L KN  I E+V L   +    C   I  Y+ L++GLCK GRLE A
Sbjct: 254 GCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 313

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +       DVVTY+ +I GL  + +  +A+ LF +M    +A + + +  LI G
Sbjct: 314 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRG 373

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++  +  +   +   M     +PD   +S ++D L+K
Sbjct: 374 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 411



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L++ + + K    A NL    L+   +PDV   N L  G     + E AF +  EM+ D 
Sbjct: 125 LLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDF 184

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA   +T+ + + GLCK+G ++ +++ F  +R     +    +S LI+GL K+G +  A
Sbjct: 185 GVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVR-RSMPVSAATFSILINGLVKAGMMIQA 243

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L           D+ TY+ +++ L  + ++ +A  L   +  N   P + T+  L++G
Sbjct: 244 HSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNG 303

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             ++    + I+LL K+ +    PD    + ++D L K + S  +   F
Sbjct: 304 LCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 352



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK+ ++E A   + EML  G KPDV  +N L  GL +    + A  + D+M   
Sbjct: 474 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM--- 530

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             ++    Y+  +DGLCK+G +     LF  +       + Q  + LI  LCK+ R++ A
Sbjct: 531 --SSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVA-NSQTRTRLIFHLCKANRVDEA 587

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+++ R   +     Y+ +I  L   G++++   ++ +M      P+ +T+  L++G
Sbjct: 588 VSLFNAI-RKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTR-WWKPDRVTYNALLNG 645

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
            I  N   +      +M  +  +P  SI+  + D   K+     S P
Sbjct: 646 MIGANRMDRAHYYYLEMTGRGYVPPVSILHKLADDRLKDMPGPASRP 692


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 12/238 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK   +E A  ++ EM+ +G+ PD V +NTL  G  ++     A  +F EM R G
Sbjct: 233 VVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKG 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  I  +CK G +  +V L R +R    +++   ++ LIDG CK G L+ AL
Sbjct: 293 IMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDAL 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  +   VV Y+ +I+G    G+MD+A +L  +ME   V P+V+T+ T++  +
Sbjct: 353 LAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAY 412

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA------------KNEISLNSLP 227
            +  +     +L  +M E  V+PDA   S ++ +L             KN ISL   P
Sbjct: 413 CKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQP 470



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  +C+  E++ A  L   M   G+KP++V  N++  G+ +  ++E A K+FDEM ++G
Sbjct: 198 LVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEG 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  +Y   + G CK G   E++ +F  +       D+  ++ LI  +CK+G LE A+
Sbjct: 258 LAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAV 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  + +T++ +I G    G +D A     +M +  + P+V+ +  LI+G+
Sbjct: 318 GLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGY 377

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +    +  EL+ +M+ K V PD    S ++    KN
Sbjct: 378 CMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKN 415



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYCK      AL++++EM  KGI PDVV   +L   + +   +ERA  L  EM+  G
Sbjct: 268 LVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G++ +++   R +R  + +  +  Y+ LI+G C  GR++ A 
Sbjct: 328 LQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAR 387

Query: 122 ELF----------------------------HS--------LPRGVLVADVVTYSIMIHG 145
           EL                             HS        L  GVL  D +TYS +I  
Sbjct: 388 ELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL-PDAITYSSLIRV 446

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  + ++  AH LF +M    + P+ +T+ +LI G  +     + + L  +M +  V+PD
Sbjct: 447 LCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPD 506

Query: 206 ASIVSIVVDLLAKN 219
               S++++ L+K+
Sbjct: 507 VVTYSVLINGLSKS 520



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 105/193 (54%), Gaps = 1/193 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P V+ +N + + L +   +  A + FD M  DGVA +  TY I +  LC  G+  E+
Sbjct: 118 GYAPSVLAYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + + R +R   C+ +   Y+ L+   C++G ++ A  L   +  G L  ++VT++ +++G
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +   G+M+ A  +F +M +  +AP+ +++ TL+ G+ ++    + + +  +M  K +MPD
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296

Query: 206 ASIVSIVVDLLAK 218
               + ++ ++ K
Sbjct: 297 VVTFTSLIHVMCK 309



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC    ++ A  L  EM +KG+KPDVV ++T+     +      AF+L  +M  +G
Sbjct: 373 LINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENG 432

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  I  LC+   + ++  LF+ +  L  + D   Y+ LIDG CK G +E AL
Sbjct: 433 VLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERAL 492

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  ++ DVVTYS++I+GL    +  +A  L   +      P  I +  L+   
Sbjct: 493 SLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMR-C 551

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
            R  E   V+ LL     K +M +A  V
Sbjct: 552 CRNAELKSVLALLKGFCMKGLMNEADKV 579



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C     + AL++  +M   G  P+ V +NTL        +V+RA +L D M+  
Sbjct: 162 ILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREG 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+   ++G+CK G + ++ ++F  +       D  +Y+ L+ G CK G    A
Sbjct: 222 GLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  + R  ++ DVVT++ +IH +   G +++A  L  +M E  +  N ITF  LI G
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +       +  + +M++  + P
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQP 365



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 102/210 (48%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           +  +  A   +  MLS G+ P+V  +N L   L      + A  +  +M+  G   +  T
Sbjct: 135 DASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVT 194

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y   +   C+ G +  +  L   +R    + ++  ++ +++G+CK+GR+E A ++F  + 
Sbjct: 195 YNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV 254

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           +  L  D V+Y+ ++ G    G   +A  +F +M    + P+V+TF +LIH   +     
Sbjct: 255 KEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLE 314

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + L+ +M+E+ +  +    + ++D   K
Sbjct: 315 RAVGLVREMRERGLQMNEITFTALIDGFCK 344



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 15/229 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+ K +  A  L+  M+S G++PD V + +L  G  +   VERA  L DEM + G
Sbjct: 443 LIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAG 502

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-------------RILKC--ELDIQAYSC 106
           V  D  TY++ I+GL K+    E+  L   L              +++C    ++++   
Sbjct: 503 VLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLA 562

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+ G C  G +  A +++ S+       D   YS++IHG   +G + KA      M +  
Sbjct: 563 LLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCG 622

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
            APN  +  +LI G        +  +++ ++     + DA     ++DL
Sbjct: 623 FAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDL 671



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 15/218 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKLF--- 54
           LI+G+CK   +E AL+L+ EM+  G+ PDVV ++ L  GL +  + + A    FKL+   
Sbjct: 478 LIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEE 537

Query: 55  --------DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
                   D + R    A+ ++    + G C  G + E+ ++++++      LD   YS 
Sbjct: 538 PVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSV 597

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI G C+ G +  AL     + +     +  +   +I GL+  G + +A  +   +    
Sbjct: 598 LIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCC 657

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              +      LI   ++      V+++LH M    ++P
Sbjct: 658 SLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLP 695



 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+C+   +  AL+ + +ML  G  P+     +L  GLFE   V  A ++  ++   
Sbjct: 597 VLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNC 656

Query: 61  GVAADTRTYTIFID 74
              AD       ID
Sbjct: 657 CSLADAEASKALID 670


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + K    E    +Y+EML  G  PD+++ NT    +F+  ++E+   LF E++  G
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R+YTI I GL K G+  E+ ELF T++   C LD +AY+ +IDG CKSG++  A 
Sbjct: 580 FIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAY 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        VVTY  +I GL    ++D+A+ LF + +   +  NV+ + +LI GF
Sbjct: 640 QLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGF 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   ++ ++ +K + P+    + ++D L K E
Sbjct: 700 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 117/216 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK+ ++  A  L  EM +KG +P VV + ++  GL +I +++ A+ LF+E +  G
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 684

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   L       ++  ++CL+D L K+  +  AL
Sbjct: 685 IELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       + +TYSI+IHGL    + +KA   + +M++    PNV T+ T+I G 
Sbjct: 745 VCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +     +   L  K KEK  + D++I + +++ L+
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 4/222 (1%)

Query: 1   ILINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           +L+N Y  C  K  EIE    L+ E+ + G  PD   +  L  GL +      A++LF  
Sbjct: 550 LLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYT 609

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G   DTR Y   IDG CK+G + ++ +L   ++    E  +  Y  +IDGL K  R
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDR 669

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L+ A  LF       +  +VV YS +I G    G++D+A+ +  ++ +  + PNV T+  
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L+   ++  E S+ +     MK+    P+    SI++  L K
Sbjct: 730 LLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCK 771



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  ++  ++ A  LY +ML     P+ V++ +L    F+  + E   K+++EM R G
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLG 544

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D      ++D + K G I +   LF+ ++ L    D ++Y+ LI GL K+G    A 
Sbjct: 545 CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAY 604

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+++     V D   Y+ +I G    G+++KA+ L  +M+     P V+T+G++I G 
Sbjct: 605 ELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  I S ++D   K
Sbjct: 665 AKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK + ++ A +++  +  K  +PD V + +L  GL    +V+ A+KL+++M   
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDA 508

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   YT  I    K G   +  +++  +  L C  D+   +  +D + K+G +E  
Sbjct: 509 NQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKG 568

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +     + D  +Y+I+IHGL   G   +A++LF  M+E     +   + T+I G
Sbjct: 569 RALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDG 628

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  + +K  +LL +MK K   P       V+D LAK
Sbjct: 629 FCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAK 666



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   ++ A  L+ E  SKGI+ +VVI+++L  G  ++ +++ A+ + +E+ + G
Sbjct: 660 VIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 719

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ LKC  +   YS LI GLCK  +   A 
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +     +V TY+ MI GL   G + +A  LF   +E     +   +  +I G 
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N  S    L  + + K          +++D L K E
Sbjct: 840 SNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAE 878



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 36/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + +   ++ AL+L  EM S  ++PDVV++N       +  +V+ A+K F EM+ +G
Sbjct: 241 LIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANG 300

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------------------- 92
           +  D  TYT  I  LCK   + E+VELF  +                             
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 93  ------RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                 R   C   + +Y+C++  L + G+++ AL+ F  + +   + ++ TY+IMI  L
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA-IPNLSTYNIMIDML 419

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+++ A  +   M++  + PNVIT   ++    +         +   +  K   PDA
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479

Query: 207 SIVSIVVDLLAKN 219
                +++ L ++
Sbjct: 480 VTYCSLIEGLGRH 492



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI     +++ +  L L+ +M   G   +V +  TL        +V+ A  L DEM+ + 
Sbjct: 206 LIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS 265

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + ID   K G +  + + F  ++     LD   Y+ +I  LCK+ RL  A+
Sbjct: 266 LEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAV 325

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + +   V     Y+ MI G    G+ + A+ L          P+V+++  ++   
Sbjct: 326 ELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCL 385

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  + ++   +MK K+ +P+ S  +I++D+L K
Sbjct: 386 GRKGQVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCK 421



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 106/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK  ++E AL +   M   G+ P+V+  N +   L +  +++ A  +F+ +   
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   I+GL ++G + E+ +L+  +       +   Y+ LI    K GR E  
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++++ + R     D++  +  +  ++  G+++K   LF +++     P+  ++  LIHG
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++     +  EL + MKE+  + D    + V+D   K+
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKS 632



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 109/268 (40%), Gaps = 34/268 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           +I GY    + E A +L      KG  P VV +N +   L    QV+ A K F+EM++D 
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405

Query: 61  ---------------------------------GVAADTRTYTIFIDGLCKNGYIVESVE 87
                                            G+  +  T  I +D LCK   + ++  
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +F  L    C  D   Y  LI+GL + GR++ A +L+  +     + + V Y+ +I   +
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G+ +  H ++ +M     +P+++   T +    +  E  K   L  ++K    +PDA 
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDAR 585

Query: 208 IVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +I++  L K   +  +   F   + Q
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQ 613



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 94/213 (44%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + K++++  A      M     +P    +  L   L      +    LF +MQ  G A +
Sbjct: 175 FIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
              +T  I    + G +  ++ L   ++    E D+  Y+  ID   K+G++++A + FH
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFH 294

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    LV D VTY+ MI  L    ++++A +LF  M++N   P    + T+I G+    
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG 354

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +      LL + + K  +P     + ++  L +
Sbjct: 355 KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGR 387



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK ++   A   + EM  +G KP+V  + T+  GL +   +  A  LF++ +  
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD+  Y   I+GL       ++  LF   R+  C +  +    L+D L K+  +E A
Sbjct: 824 GGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 80/185 (43%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N+L + +    +     ++ +EM   G      T    +    K+  + E+    +T+R
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
            LK      AY+ LI  L  S   +  L LF  +       +V  ++ +I     +G++D
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVD 252

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            A  L  +M+ N++ P+V+ +   I  F +  +     +  H+MK   ++ D    + ++
Sbjct: 253 AALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMI 312

Query: 214 DLLAK 218
            +L K
Sbjct: 313 GVLCK 317



 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   I  A  L+ +   KG   D  I+N +  GL   ++   A++LF+E +  G
Sbjct: 800 MISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKG 859

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
            +  T+T  + +D L K   I ++  +   LR
Sbjct: 860 CSIYTKTCVVLLDSLHKAECIEQAAIVGAVLR 891


>gi|12324348|gb|AAG52140.1|AC022355_1 hypothetical protein; 19198-19943 [Arabidopsis thaliana]
          Length = 233

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 15/215 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK K ++  + L+ EM  +G+  + V + TL  GLF+    + A ++F EM  DG
Sbjct: 20  LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDG 79

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I +DGLCKNG + +++ +F  ++                 +CK+G++E   
Sbjct: 80  VPPDIMTYNILLDGLCKNGKLEKALVVFGYMQ---------------KRMCKAGKVEDGW 124

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    +  +VVTY+ MI G    G  ++A+ LF  M+E+   P+  T+ TLI   
Sbjct: 125 DLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAH 184

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +R  + +   EL+ +M+      DAS   +V D+L
Sbjct: 185 LRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 219



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 60/104 (57%)

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           C  ++  Y+ LI G CK+ R++  +ELF  + +  LV + VTY+ +I GL+  G  D A 
Sbjct: 10  CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQ 69

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           ++F +M  + V P+++T+  L+ G  +  +  K + +   M+++
Sbjct: 70  EIFKEMVSDGVPPDIMTYNILLDGLCKNGKLEKALVVFGYMQKR 113



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +VVTY+ +I G     ++D+  +LF +M +  +  N +T+ TLI G  +  +     E+ 
Sbjct: 13  NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIF 72

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +M    V PD    +I++D L KN
Sbjct: 73  KEMVSDGVPPDIMTYNILLDGLCKN 97


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + K    E    +Y+EML  G  PD+++ NT    +F+  ++E+   LF E++  G
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R+YTI I GL K G+  E+ ELF T++   C LD +AY+ +IDG CKSG++  A 
Sbjct: 580 FIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAY 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        VVTY  +I GL    ++D+A+ LF + +   +  NV+ + +LI GF
Sbjct: 640 QLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGF 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   ++ ++ +K + P+    + ++D L K E
Sbjct: 700 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 117/216 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK+ ++  A  L  EM +KG +P VV + ++  GL +I +++ A+ LF+E +  G
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 684

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   L       ++  ++CL+D L K+  +  AL
Sbjct: 685 IELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       + +TYSI+IHGL    + +KA   + +M++    PNV T+ T+I G 
Sbjct: 745 VCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +     +   L  K KEK  + D++I + +++ L+
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 4/222 (1%)

Query: 1   ILINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           +L+N Y  C  K  EIE    L+ E+ + G  PD   +  L  GL +      A++LF  
Sbjct: 550 LLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYT 609

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G   DTR Y   IDG CK+G + ++ +L   ++    E  +  Y  +IDGL K  R
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDR 669

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L+ A  LF       +  +VV YS +I G    G++D+A+ +  ++ +  + PNV T+  
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L+   ++  E S+ +     MK+    P+    SI++  L K
Sbjct: 730 LLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCK 771



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  ++  ++ A  LY +ML     P+ V++ +L    F+  + E   K+++EM R G
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLG 544

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D      ++D + K G I +   LF+ ++ L    D ++Y+ LI GL K+G    A 
Sbjct: 545 CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAY 604

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+++     V D   Y+ +I G    G+++KA+ L  +M+     P V+T+G++I G 
Sbjct: 605 ELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  I S ++D   K
Sbjct: 665 AKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK + ++ A +++  +  K  +PD V + +L  GL    +V+ A+KL+++M   
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDA 508

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   YT  I    K G   +  +++  +  L C  D+   +  +D + K+G +E  
Sbjct: 509 NQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKG 568

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +     + D  +Y+I+IHGL   G   +A++LF  M+E     +   + T+I G
Sbjct: 569 RALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDG 628

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  + +K  +LL +MK K   P       V+D LAK
Sbjct: 629 FCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAK 666



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   ++ A  L+ E  SKGI+ +VVI+++L  G  ++ +++ A+ + +E+ + G
Sbjct: 660 VIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 719

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ LKC  +   YS LI GLCK  +   A 
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +     +V TY+ MI GL   G + +A  LF   +E     +   +  +I G 
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N  S    L  + + K          +++D L K E
Sbjct: 840 SNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAE 878



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 36/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + +   ++ AL+L  EM S  ++PDVV++N       +  +V+ A+K F EM+ +G
Sbjct: 241 LIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANG 300

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------------------- 92
           +  D  TYT  I  LCK   + E+VELF  +                             
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 93  ------RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                 R   C   + +Y+C++  L + G+++ AL+ F  + +   + ++ TY+IMI  L
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA-IPNLSTYNIMIDML 419

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+++ A  +   M++  + PNVIT   ++    +         +   +  K   PDA
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479

Query: 207 SIVSIVVDLLAKN 219
                +++ L ++
Sbjct: 480 VTYCSLIEGLGRH 492



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI     +++ +  L L+ +M   G   +V +  TL        +V+ A  L DEM+ + 
Sbjct: 206 LIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS 265

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + ID   K G +  + + F  ++     LD   Y+ +I  LCK+ RL  A+
Sbjct: 266 LEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAV 325

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + +   V     Y+ MI G    G+ + A+ L          P+V+++  ++   
Sbjct: 326 ELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCL 385

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  + ++   +MK K+ +P+ S  +I++D+L K
Sbjct: 386 GRKGQVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCK 421



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 106/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK  ++E AL +   M   G+ P+V+  N +   L +  +++ A  +F+ +   
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   I+GL ++G + E+ +L+  +       +   Y+ LI    K GR E  
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++++ + R     D++  +  +  ++  G+++K   LF +++     P+  ++  LIHG
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++     +  EL + MKE+  + D    + V+D   K+
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKS 632



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 109/268 (40%), Gaps = 34/268 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           +I GY    + E A +L      KG  P VV +N +   L    QV+ A K F+EM++D 
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405

Query: 61  ---------------------------------GVAADTRTYTIFIDGLCKNGYIVESVE 87
                                            G+  +  T  I +D LCK   + ++  
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +F  L    C  D   Y  LI+GL + GR++ A +L+  +     + + V Y+ +I   +
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G+ +  H ++ +M     +P+++   T +    +  E  K   L  ++K    +PDA 
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDAR 585

Query: 208 IVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +I++  L K   +  +   F   + Q
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQ 613



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 94/213 (44%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + K++++  A      M     +P    +  L   L      +    LF +MQ  G A +
Sbjct: 175 FIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
              +T  I    + G +  ++ L   ++    E D+  Y+  ID   K+G++++A + FH
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFH 294

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    LV D VTY+ MI  L    ++++A +LF  M++N   P    + T+I G+    
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG 354

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +      LL + + K  +P     + ++  L +
Sbjct: 355 KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGR 387



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK ++   A   + EM  +G KP+V  + T+  GL +   +  A  LF++ +  
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD+  Y   I+GL       ++  LF   R+  C +  +    L+D L K+  +E A
Sbjct: 824 GGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 80/185 (43%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N+L + +    +     ++ +EM   G      T    +    K+  + E+    +T+R
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
            LK      AY+ LI  L  S   +  L LF  +       +V  ++ +I     +G++D
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVD 252

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            A  L  +M+ N++ P+V+ +   I  F +  +     +  H+MK   ++ D    + ++
Sbjct: 253 AALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMI 312

Query: 214 DLLAK 218
            +L K
Sbjct: 313 GVLCK 317



 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   I  A  L+ +   KG   D  I+N +  GL   ++   A++LF+E +  G
Sbjct: 800 MISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKG 859

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
            +  T+T  + +D L K   I ++  +   LR
Sbjct: 860 CSIYTKTCVVLLDSLHKAECIEQAAIVGAVLR 891


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG  K + +      + EMLSKG++PD   +NT       +     AF+L + M   
Sbjct: 447 ILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISR 506

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+++DT TY IF+DGLCK+G + ++  L+  +     + D   Y+CLI   C+ GRL  A
Sbjct: 507 GISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREA 566

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    L    VTY++ IH     G +  A+  F  M E  V PN +T+  LIH 
Sbjct: 567 RDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHA 626

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R+   +   +  H+M E+ + P+    ++++D
Sbjct: 627 LCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLID 660



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 102/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++GYC+  ++E A     EM+ +G +PDV  +  L  G  ++  +    + FDEM   
Sbjct: 412 ILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSK 471

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I      G   E+ +L   +       D   Y+  +DGLCKSG L+ A
Sbjct: 472 GLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDA 531

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  +    L  D +TY+ +IH     G++ +A D+F  M  + + P+ +T+   IH 
Sbjct: 532 YVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHA 591

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R            KM E+ V P+    ++++  L +
Sbjct: 592 YCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCR 629



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++ING  +  E+E A  L   M +SK  K      N L  G F    VE+A  L  EM+ 
Sbjct: 273 VVINGLARKGELEKAAQLVDRMRMSK--KASAFTFNPLITGYFARGSVEKAGALQLEMEN 330

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G+     TY   I G+ ++G +  +   F  +R +    D+  Y+ LI+G CK+G L+ 
Sbjct: 331 EGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKE 390

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL LF  L R  L   V+TY+I++ G    G +++A     +M E    P+V T+  L++
Sbjct: 391 ALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMN 450

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G  ++   + V E   +M  K + PD
Sbjct: 451 GSRKVRNLAMVREFFDEMLSKGLQPD 476



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY     +E A  L  EM ++GI P VV +NT+  G+F    VE A   F EM+  G
Sbjct: 308 LITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+G CK G + E++ LF  L+       +  Y+ L+DG C+ G LE A 
Sbjct: 368 LLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEAR 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +       DV TY+I+++G      +    + F +M    + P+   + T I   
Sbjct: 428 RFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAE 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +   S+  +L   M  + +  D    +I +D L K+
Sbjct: 488 LILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKS 525



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 106/200 (53%), Gaps = 3/200 (1%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR--DGVAADTRTYTIFID 74
           ++Y+EML  GI+P +V +NTL    F   +V++A KL  EM+    G      TY + I+
Sbjct: 217 SVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVIN 276

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GL + G + ++ +L   +R+ K +     ++ LI G    G +E A  L   +    +V 
Sbjct: 277 GLARKGELEKAAQLVDRMRMSK-KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVP 335

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            VVTY+ +IHG++  G ++ A   F++M    + P++IT+ +LI+G+ +     + + L 
Sbjct: 336 TVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLF 395

Query: 195 HKMKEKNVMPDASIVSIVVD 214
             +K   + P     +I++D
Sbjct: 396 GDLKRAGLAPSVLTYNILLD 415



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I ++G CK+  ++ A  L+ +M+S G++PD + +  L     E  ++  A  +FD M   
Sbjct: 517 IFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVS 576

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT+FI   C+ G +  +   F+ +       +   Y+ LI  LC+ GR  +A
Sbjct: 577 GLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLA 636

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + FH +    L  +  TY+++I G   +G  ++A  L+ +M ++ + P+  T   L  G
Sbjct: 637 YQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKG 696

Query: 181 F 181
           F
Sbjct: 697 F 697



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 37/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  ++  +E A   + EM + G+ PD++ +N+L  G  +   ++ A  LF +++R G
Sbjct: 343 IIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAG 402

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY I +DG C+ G + E+    + +    C+ D+  Y+ L++G  K   L +  
Sbjct: 403 LAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVR 462

Query: 122 ELFHSL------------------------------------PRGVLVADVVTYSIMIHG 145
           E F  +                                     RG+  +D VTY+I + G
Sbjct: 463 EFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGI-SSDTVTYNIFLDG 521

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A+ L++ M  + + P+ IT+  LIH         +  ++   M    + P 
Sbjct: 522 LCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPS 581

Query: 206 ASIVSIVV 213
           A   ++ +
Sbjct: 582 AVTYTVFI 589



 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/81 (19%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           ++++  L ++ + D    ++ +M +  + P+++T+ TL+  F R     +  +LL +M+ 
Sbjct: 200 NLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEA 259

Query: 200 K--NVMPDASIVSIVVDLLAK 218
           +    +P     ++V++ LA+
Sbjct: 260 RPGGCLPSDVTYNVVINGLAR 280


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 125/219 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A +LYSEM ++GI P+V+ ++TL  G     Q+  AF L +EM    
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYTI +D LCK G + E+  L   +     + ++ +Y+ L+DG C  G ++ A 
Sbjct: 216 INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH++ +  +  +V +Y+IMI  L    ++D+A +L  ++    + PN +T+ +LI GF
Sbjct: 276 QMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGF 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++   +  ++LL +M  +    D    + ++D L KN+
Sbjct: 336 CKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQ 374



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 103/183 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  +++ A NL + M  +G+KP+VV +NTL  G   I +V+ A ++F  M + 
Sbjct: 225 ILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQK 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  +Y I ID LCK+  + E++ L R +       +   YS LIDG CK GR+  A
Sbjct: 285 GVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +      ADVVTY+ ++  L  +  +DKA  LF+ M+E  + PN  T+  LI G
Sbjct: 345 LDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDG 404

Query: 181 FIR 183
             +
Sbjct: 405 LCK 407



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 5/202 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   I  AL+L  EM  +G   DVV + +L   L +   +++A  LF +M+  G
Sbjct: 331 LIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  IDGLCK G    + +LF+ L +  C +++  Y+ +I GLCK G L+ AL
Sbjct: 391 IQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEAL 450

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     + D VT+ I+I  L+   Q DKA  L  +M    +A +++ F    HG 
Sbjct: 451 AMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM----IAKDLLRFRDF-HGE 505

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
              NE  K  +LLH+M  K ++
Sbjct: 506 RSPNENDKAEKLLHEMIAKGLL 527



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 117/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   E++ +L+ + +++++G + D V + TL  GL +I +   A KL   ++   
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRS 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   IDGLCK+  + E+ +L+  +       ++  YS LI G C +G+L  A 
Sbjct: 146 TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAF 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V TY+I++  L  +G++ +A +L   M +  V PNV+++ TL+ G+
Sbjct: 206 GLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGY 265

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             I E     ++ H M +K V P+    +I++D L K++
Sbjct: 266 CLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSK 304



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++    K K    A++L+ +M  KGI+PD+   N L      + Q+  +F +  ++ + G
Sbjct: 16  IVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +T T    + GLC  G + +S+     +     ++D  +Y+ L++GLCK G    AL
Sbjct: 76  YQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSAL 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       +VV Y+ +I GL  D  +++A+DL+ +M+   + PNVIT+ TLI+GF
Sbjct: 136 KLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGF 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  +   LL++M  KN+ P+    +I++D L K
Sbjct: 196 CLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCK 232



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC   E++ A  ++  M+ KG+ P+V  +N +   L +  +V+ A  L  E+    
Sbjct: 261 LMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKN 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY+  IDG CK G I  +++L + +       D+  Y+ L+D LCK+  L+ A 
Sbjct: 321 MVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +  TY+ +I GL   G+   A  LF  +       NV T+  +I G 
Sbjct: 381 ALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGL 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     + + +  KM+E   +PDA    I++
Sbjct: 441 CKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  E   AL L   +  +  +P+VV++NT+  GL +   V  A+ L+ EM   G
Sbjct: 121 LLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I G C  G ++E+  L   + +     ++  Y+ L+D LCK G+++ A 
Sbjct: 181 IFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAK 240

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  +VV+Y+ ++ G    G++  A  +F  M +  V PNV ++  +I   
Sbjct: 241 NLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRL 300

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + LL ++  KN++P+    S ++D   K
Sbjct: 301 CKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCK 337



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 83/185 (44%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P ++  N +   L ++     A  LF +MQ  G+  D  T  I I+  C  G +  S  +
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +  L  + +    + L+ GLC  G ++ +L     +       D V+Y+ +++GL  
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G+   A  L   +E+ +  PNV+ + T+I G  +    ++  +L  +M  + + P+   
Sbjct: 128 IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT 187

Query: 209 VSIVV 213
            S ++
Sbjct: 188 YSTLI 192



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           ++I+G CK   ++ AL + S+M   G  PD V    +   LFE  Q ++A KL  EM
Sbjct: 435 VMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 9/244 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +CK+ ++  A     EM  +   PDVV +NT+  GL ++ ++  A  + ++MQ  G
Sbjct: 360 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG 419

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TY+  I+GLCK+  +VE+ +L   +    C  D+  Y+ +IDGLCK GRLE A
Sbjct: 420 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 479

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R     +VVTY+ +I GL    ++D+A  +  +M      PN++T+ T+++G
Sbjct: 480 EYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 539

Query: 181 FIRINEPSKVIELLHKMKEKNV--MPDASIVSIVV------DLLAKNEISLNSLPSFTVH 232
                   +  +L+ +MK+      PDA+    +V      DL+ + E  L  + S T  
Sbjct: 540 LCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSS 599

Query: 233 ERQE 236
           ++++
Sbjct: 600 QQEQ 603



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CK   +  A ++  +M+  G  P+V+  N+L  G  +   V+ A KL   M   
Sbjct: 219 VLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK 278

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  IDGLCK+   +E+ E+   ++      D   YS LI GLCK+ ++E A
Sbjct: 279 GMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEA 338

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       DVV YS +IH     G++ +A     +M +   +P+V+T+ T+I G
Sbjct: 339 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 398

Query: 181 FIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNEI 221
             ++ + ++   +L +M+E  +V+PD    S V++ L K+++
Sbjct: 399 LCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDM 440



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + + K++E A+ L  EM  +G  P++V +N L   L ++  V  A  +  +M   G
Sbjct: 185 LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 244

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T+   +DG CK G + ++ +L   +       ++  YS LIDGLCKS +   A 
Sbjct: 245 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK 304

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  D  TYS +IHGL    ++++A  +   M  +   P+V+ + ++IH F
Sbjct: 305 EVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 364

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +  + L +M+++   PD    + V+D L K
Sbjct: 365 CKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+C   ++  AL L  EM S G  PD   H  +   +     ++ A    D ++  
Sbjct: 117 IVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM---DHLRSM 173

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYT  I    +   + E+++L   +R   C  ++  Y+ L+D LCK   +  A
Sbjct: 174 GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 233

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +  G    +V+T++ ++ G    G +D A  L   M    + PNV+T+  LI G
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 293

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +  +  E+L +MK + V PDA   S ++  L K +
Sbjct: 294 LCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKAD 333



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 5/214 (2%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK     G L   SE+L+   +PDV  +N +  G      +  A +L +EM+  G A D 
Sbjct: 90  CKKHREAGDL-FRSELLAS-CEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDA 147

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+T  I  +   G +  +++    LR + C+ ++  Y+ LI    ++ +LE A++L   
Sbjct: 148 FTHTPIITAMANAGDLDGAMD---HLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEE 204

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +       ++VTY++++  L     +  A D+   M E   APNV+TF +L+ GF +   
Sbjct: 205 MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 264

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                +LL  M  K + P+    S ++D L K++
Sbjct: 265 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 298


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 3/227 (1%)

Query: 2   LINGYCKNK---EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L++GYCK     ++  A     EML+  I P+ V  NTL  G  +   V  A K F+EMQ
Sbjct: 241 LVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQ 300

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           + G+  +  TY   I+GLC NG + E+++L+  +  L  + +I  Y+ LI+G CK   ++
Sbjct: 301 KQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMK 360

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A ++F  + +  LV +V+T++ MI     +G M++   L   M +  + PNV T+  LI
Sbjct: 361 EATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLI 420

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            G  R  +     ELL++M+ K +  D    +I++D L KN+ S N+
Sbjct: 421 AGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNA 467



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 127/281 (45%), Gaps = 70/281 (24%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK++ +  A   + EM  +G+KP++V +N+L  GL    ++E A  L+D+M   G
Sbjct: 279 LIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLG 338

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------------FRTLRILKCE-------- 98
           +  +  TY   I+G CK   + E+ ++               F T+    C+        
Sbjct: 339 LKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398

Query: 99  ------LD------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                 LD      +  Y+CLI GLC+   L+ A EL + +    L  DVVTY+I+I GL
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGL 458

Query: 147 ---------------------------YN--------DGQMDKAHDLFLDMEENAVAPNV 171
                                      YN        +G++  A ++   ME+    PNV
Sbjct: 459 CKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNV 518

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           +T+  LI G+ +IN+      LL++M EK + P+ +   IV
Sbjct: 519 VTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 113/241 (46%), Gaps = 3/241 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y KN E+  A   ++     G K  +   N L   L + +++     ++ EM + 
Sbjct: 135 MLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKR 194

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK---SGRL 117
            +  +  T+ IFI+GLC+ G + ++ +    ++      ++  Y+ L+DG CK   +G++
Sbjct: 195 RIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKM 254

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A      +    +  + VT++ +I G   D  +  A   F +M++  + PN++T+ +L
Sbjct: 255 YKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSL 314

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           I+G     +  + I+L  KM    + P+    + +++   K ++   +   F    +QE 
Sbjct: 315 INGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQEL 374

Query: 238 V 238
           V
Sbjct: 375 V 375



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CKN +   A  L +EM + G+KP+ V +NTL  G     +++ A  +   M+++
Sbjct: 453 ILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKE 512

Query: 61  GVAADTRTYTIFIDGLCK 78
               +  TY + I G CK
Sbjct: 513 RKQPNVVTYNVLIKGYCK 530



 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE 43
           +LI GYCK  ++E A  L +EML KG+ P+   ++ + + + E
Sbjct: 523 VLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLE 565


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C  K+++ A     EM+ +G+KPD   ++ L  GLF +++VE A + +D+ +R+G
Sbjct: 546 LISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNG 605

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++ IDG CK     E  E F  +     + +   Y+ LI   C+SGRL +AL
Sbjct: 606 MLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 665

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  +  TY+ +I G+    ++++A  LF +M    + PNV  +  LI G+
Sbjct: 666 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 725

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ +  KV  LL +M  KNV P+    ++++   A++
Sbjct: 726 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 763



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 98/183 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK +  E     + EM+SK ++P+ V++N L        ++  A +L ++M+  
Sbjct: 615 VMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 674

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ ++ TYT  I G+     + E+  LF  +R+   E ++  Y+ LIDG  K G++   
Sbjct: 675 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 734

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  + +TY++MI G   DG + +A  L  +M E  + P+ IT+   I+G
Sbjct: 735 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 794

Query: 181 FIR 183
           +++
Sbjct: 795 YLK 797



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C +   + AL    EML + + P   +  TL  GL +  +  +A +L+ +    G   DT
Sbjct: 446 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 505

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           RT    + GLC+ G + E+  + + +    C +D  +Y+ LI G C   +L+ A      
Sbjct: 506 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 565

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  D  TYSI+I GL+N  ++++A   + D + N + P+V T+  +I G  +   
Sbjct: 566 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 625

Query: 187 PSKVIELLHKMKEKNVMPDASI 208
             +  E   +M  KNV P+  +
Sbjct: 626 TEEGQEFFDEMMSKNVQPNTVV 647



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCKN + + A  L  EMLS G   +     ++   L      + A +   EM    
Sbjct: 406 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++      T  I GLCK+G   +++EL+         +D +  + L+ GLC++G+L+ A 
Sbjct: 466 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 525

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    L RG  V D V+Y+ +I G     ++D+A     +M +  + P+  T+  LI G
Sbjct: 526 RIQKEILGRGC-VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICG 584

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +N+  + I+     K   ++PD    S+++D   K E
Sbjct: 585 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 624



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 1   ILINGYCKNKEIEG---ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LI  YC   + +G   AL+++  + +KG+ P     N L   L   ++ ++  + FD +
Sbjct: 193 LLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV 252

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            + GV+ D   +T  I+  CK G + E+V+LF  +       ++  ++ +IDGL   GR 
Sbjct: 253 CK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 311

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A      +    +   ++TYSI++ GL    ++  A+ +  +M +    PNVI +  L
Sbjct: 312 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 371

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I  FI     +K IE+   M  K +   +S  + ++    KN
Sbjct: 372 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKN 413



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC++  +  AL L  +M  KGI P+   + +L  G+  I +VE A  LF+EM+ +G
Sbjct: 651 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 710

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDG  K G +V+   L R +       +   Y+ +I G  + G +  A 
Sbjct: 711 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 770

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            L + +    +V D +TY   I+G    G
Sbjct: 771 RLLNEMREKGIVPDSITYKEFIYGYLKQG 799



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 35/239 (14%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-----------FEIHQVER-- 49
           IN +CK  ++E A+ L+S+M   G+ P+VV  NT+  GL           F+   VER  
Sbjct: 267 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 326

Query: 50  ----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
                                 A+ +  EM + G   +   Y   ID   + G + +++E
Sbjct: 327 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 386

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +   +      L    Y+ LI G CK+G+ + A  L   +       +  +++ +I  L 
Sbjct: 387 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 446

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +    D A     +M    ++P      TLI G  +  + SK +EL  +   K  + D 
Sbjct: 447 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 505



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  ++     L  EM SK + P+ + +  +  G      V  A +L +EM+  G
Sbjct: 721 LIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 780

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE 87
           +  D+ TY  FI G  K G ++E+ +
Sbjct: 781 IVPDSITYKEFIYGYLKQGGVLEAFK 806



 Score = 36.6 bits (83), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           ++I GY ++  +  A  L +EM  KGI PD + +     G  +   V  AFK  DE
Sbjct: 755 VMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 810


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 119/201 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C    IE A+++ ++M+  GIKPDVVI+ T+   L +   V+ A  LF++M+  G
Sbjct: 147 LINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYG 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  ++GLC +G   ++  L R +   K + D+  ++ LID   K G+L  A 
Sbjct: 207 IRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAK 266

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL++ + +  +  ++ TY+ +I+GL  +G++D+A  +F  ME     P+V+ + +LI+GF
Sbjct: 267 ELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGF 326

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +  +    +++ ++M +K +
Sbjct: 327 CKCKKVEDAMKIFYEMSQKGL 347



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C +     A  L   M+ + IKPDV+  N L     +  ++  A +L++EM +  
Sbjct: 217 LVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMS 276

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  I+GLC  G + E+ ++F  +    C  D+ AY+ LI+G CK  ++E A+
Sbjct: 277 IAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAM 336

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ + +  L  + +TY+ +I G    G+ + A ++F  M    V PN+ T+  L+H  
Sbjct: 337 KIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCL 396

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               ++N+   + E + K +   V P+    ++++  L  N
Sbjct: 397 CYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYN 437



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N +C++ +   A +   +++  G +PD+    +L  G    +++E A  + ++M   
Sbjct: 111 LLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEM 170

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  ID LCKNG++  ++ LF  +       D+  Y+ L++GLC SGR   A
Sbjct: 171 GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDA 230

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  DV+T++ +I     +G++  A +L+ +M + ++APN+ T+ +LI+G
Sbjct: 231 DLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLING 290

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   +  ++ + M+ K   PD    + +++   K
Sbjct: 291 LCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCK 328



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 7/206 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK K++E A+ ++ EM  KG+  + + + TL  G   + +   A ++F  M   G
Sbjct: 322 LINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRG 381

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-----IQAYSCLIDGLCKSGR 116
           V  + RTY + +  LC NG + +++ +F  ++  K E+D     I+ Y+ L+ GLC +G+
Sbjct: 382 VPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQ--KREIDGVPPNIRTYNVLLHGLCYNGK 439

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           LE AL +F  + +  +   ++TY+I+I G+   G++  A +LF  +    V PNV+T+ T
Sbjct: 440 LEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTT 499

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNV 202
           +I G  R     +   L  KMKE  V
Sbjct: 500 MISGLFREGLMLEAHVLFRKMKEDGV 525



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 101/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K K+ +  +NL   +   G+  D+   N L     +  Q   A     ++ + G
Sbjct: 77  LLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLG 136

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I+G C    I E++ +   +  +  + D+  Y+ +ID LCK+G ++ AL
Sbjct: 137 FEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNAL 196

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  DVV Y+ +++GL N G+   A  L   M +  + P+VITF  LI  F
Sbjct: 197 SLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAF 256

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +     EL ++M + ++ P+
Sbjct: 257 VKEGKLLDAKELYNEMIQMSIAPN 280



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 94/204 (46%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL+L+S M+     P ++    L   + ++ + +    L   +Q  GV+ D  T  + ++
Sbjct: 55  ALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMN 114

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C++     +      L  L  E DI  ++ LI+G C   R+E A+ + + +    +  
Sbjct: 115 CFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKP 174

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DVV Y+ +I  L  +G +D A  LF  ME   + P+V+ + +L++G            LL
Sbjct: 175 DVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLL 234

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
             M ++ + PD    + ++D   K
Sbjct: 235 RGMMKRKIKPDVITFNALIDAFVK 258



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
           G CK  +++ ALNL+  + SKG+KP+VV + T+  GLF    +  A  LF +M+ DGV+
Sbjct: 468 GMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C N ++E AL ++ +M  + +   ++ +  +  G+ +  +V+ A  LF  +   
Sbjct: 429 VLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSK 488

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           GV  +  TYT  I GL + G ++E+  LFR ++
Sbjct: 489 GVKPNVVTYTTMISGLFREGLMLEAHVLFRKMK 521



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 75/174 (43%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           Q   A  LF  M           +T  ++ + K       + L + L+I+    D+   +
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCN 110

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            L++  C+S +  +A      L +     D+ T++ +I+G     ++++A  +   M E 
Sbjct: 111 LLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEM 170

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + P+V+ + T+I    +       + L ++M+   + PD  + + +V+ L  +
Sbjct: 171 GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNS 224



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 71/150 (47%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E+++LF  +   +    I  ++ L++ + K  + ++ + L   L    +  D+ T ++++
Sbjct: 54  EALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLM 113

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +      Q   A      + +    P++ TF +LI+GF   N   + + ++++M E  + 
Sbjct: 114 NCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIK 173

Query: 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
           PD  I + ++D L KN    N+L  F   E
Sbjct: 174 PDVVIYTTIIDSLCKNGHVDNALSLFNQME 203


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C  K+++ A     EM+ +G+KPD   ++ L  GLF +++VE A + +D+ +R+G
Sbjct: 535 LISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNG 594

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++ IDG CK     E  E F  +     + +   Y+ LI   C+SGRL +AL
Sbjct: 595 MLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 654

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  +  TY+ +I G+    ++++A  LF +M    + PNV  +  LI G+
Sbjct: 655 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 714

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ +  KV  LL +M  KNV P+    ++++   A++
Sbjct: 715 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 752



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 98/183 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK +  E     + EM+SK ++P+ V++N L        ++  A +L ++M+  
Sbjct: 604 VMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 663

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ ++ TYT  I G+     + E+  LF  +R+   E ++  Y+ LIDG  K G++   
Sbjct: 664 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 723

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  + +TY++MI G   DG + +A  L  +M E  + P+ IT+   I+G
Sbjct: 724 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 783

Query: 181 FIR 183
           +++
Sbjct: 784 YLK 786



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C +   + AL    EML + + P   +  TL  GL +  +  +A +L+ +    G   DT
Sbjct: 435 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 494

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           RT    + GLC+ G + E+  + + +    C +D  +Y+ LI G C   +L+ A      
Sbjct: 495 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 554

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  D  TYSI+I GL+N  ++++A   + D + N + P+V T+  +I G  +   
Sbjct: 555 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 614

Query: 187 PSKVIELLHKMKEKNVMPDASI 208
             +  E   +M  KNV P+  +
Sbjct: 615 TEEGQEFFDEMMSKNVQPNTVV 636



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCKN + + A  L  EMLS G   +     ++   L      + A +   EM    
Sbjct: 395 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 454

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++      T  I GLCK+G   +++EL+         +D +  + L+ GLC++G+L+ A 
Sbjct: 455 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 514

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    L RG  V D V+Y+ +I G     ++D+A     +M +  + P+  T+  LI G
Sbjct: 515 RIQKEILGRGC-VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICG 573

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +N+  + I+     K   ++PD    S+++D   K E
Sbjct: 574 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 613



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 1   ILINGYCKNKEIEG---ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LI  YC   + +G   AL+++  + +KG+ P     N L   L   ++ ++  + FD +
Sbjct: 182 LLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV 241

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            + GV+ D   +T  I+  CK G + E+V+LF  +       ++  ++ +IDGL   GR 
Sbjct: 242 CK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 300

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A      +    +   ++TYSI++ GL    ++  A+ +  +M +    PNVI +  L
Sbjct: 301 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 360

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I  FI     +K IE+   M  K +   +S  + ++    KN
Sbjct: 361 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKN 402



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC++  +  AL L  +M  KGI P+   + +L  G+  I +VE A  LF+EM+ +G
Sbjct: 640 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 699

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDG  K G +V+   L R +       +   Y+ +I G  + G +  A 
Sbjct: 700 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 759

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            L + +    +V D +TY   I+G    G
Sbjct: 760 RLLNEMREKGIVPDSITYKEFIYGYLKQG 788



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 35/239 (14%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-----------FEIHQVER-- 49
           IN +CK  ++E A+ L+S+M   G+ P+VV  NT+  GL           F+   VER  
Sbjct: 256 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 315

Query: 50  ----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
                                 A+ +  EM + G   +   Y   ID   + G + +++E
Sbjct: 316 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 375

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +   +      L    Y+ LI G CK+G+ + A  L   +       +  +++ +I  L 
Sbjct: 376 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 435

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +    D A     +M    ++P      TLI G  +  + SK +EL  +   K  + D 
Sbjct: 436 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 494



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  ++     L  EM SK + P+ + +  +  G      V  A +L +EM+  G
Sbjct: 710 LIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 769

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE 87
           +  D+ TY  FI G  K G ++E+ +
Sbjct: 770 IVPDSITYKEFIYGYLKQGGVLEAFK 795



 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           ++I GY ++  +  A  L +EM  KGI PD + +     G  +   V  AFK  DE
Sbjct: 744 VMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 799


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 23/242 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK K ++ A++L+ EM  K + PD+V + +L  GL + H +ERA  L  +M+  G
Sbjct: 349 MIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQG 408

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +YTI +D LCK G +  + E F+ L +    L++Q Y+ +I+GLCK+     A+
Sbjct: 409 IQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAM 468

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-------------------- 161
           +L   +     + D +T+  +I  L+   + DKA  +  +                    
Sbjct: 469 DLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIV 528

Query: 162 ---MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              M +  + P+V+T+GTL+ G+  +NE      + + M +  V P+    +I++D L K
Sbjct: 529 LAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCK 588

Query: 219 NE 220
            +
Sbjct: 589 KK 590



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K  +++ A  + + M+   IKPDVV +N+L  G F +++V+ A  +F  M + G
Sbjct: 279 LIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSG 338

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTYT  IDGLCK   + E++ LF  ++      DI  Y+ LIDGLCK+  LE A+
Sbjct: 339 VTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAI 398

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  DV +Y+I++  L   G+++ A + F  +       NV T+  +I+G 
Sbjct: 399 ALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGL 458

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNE 220
            + +   + ++L  KM+ K  MPDA +  +I+  L  K+E
Sbjct: 459 CKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDE 498



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E +    L  ++    +KPDVV++NT+   L +   +  A  L+ EM   G
Sbjct: 174 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKG 233

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY   + G C  G++ E+  L   +++     D+  ++ LID L K G+++ A 
Sbjct: 234 ISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAK 293

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DVVTY+ +I G +   ++  A  +F  M ++ V PNV T+ T+I G 
Sbjct: 294 IVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGL 353

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L  +MK KN++PD    + ++D L KN
Sbjct: 354 CKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKN 391



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 97/162 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK K ++ A++L+ EM  K + P++V + +L   L + H +ERA  L  EM+  
Sbjct: 581 IMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEH 640

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +YTI +DGLCK+G +  + E+F+ L +    L++Q Y+ +I+ LCK+G  + A
Sbjct: 641 GIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEA 700

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           L+L   +     + D VT+ I+I  L+   + DKA  +  +M
Sbjct: 701 LDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEM 742



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY    E++ A  ++  M   G+ P+V  +  +  GL +   V+ A  LF+EM+   
Sbjct: 547 LMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKN 606

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID LCKN ++  ++ L + ++    + D+ +Y+ L+DGLCKSGRLE A 
Sbjct: 607 MFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAK 666

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L       +V  Y+ MI+ L   G  D+A DL   ME+    P+ +TF  +I   
Sbjct: 667 EIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWAL 726

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
              +E  K  ++L +M  + +M +
Sbjct: 727 FEKDENDKAEKILXEMIARGLMKE 750



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 1/200 (0%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M    IKPDVV + TL  G F +++++ A  +F  M + GV  + + YTI IDGLCK   
Sbjct: 532 MTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKT 591

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + E++ LF  ++      +I  Y+ LID LCK+  LE A+ L   +    +  DV +Y+I
Sbjct: 592 VDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTI 651

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++ GL   G+++ A ++F  +       NV  +  +I+   +     + ++L  KM++K 
Sbjct: 652 LLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKG 711

Query: 202 VMPDASIVSIVV-DLLAKNE 220
            MPDA    I++  L  K+E
Sbjct: 712 CMPDAVTFDIIIWALFEKDE 731



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 101/210 (48%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           NK     ++L+ +  S G  PD+   N L      +  +  AF +   + + G   +  T
Sbjct: 76  NKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAIT 135

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
               I GLC  G I +++     +     +L+  +Y  LI+GLCK+G  +    L   L 
Sbjct: 136 LNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLE 195

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +  DVV Y+ +IH L  +  +  A DL+ +M    ++PNV+T+  L++GF  +    
Sbjct: 196 GHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLK 255

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   LL++MK KN+ PD    + ++D L K
Sbjct: 256 EAFSLLNEMKLKNINPDVCTFNTLIDALGK 285



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 110/220 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   EI+ AL  + +++++G + + V + TL  GL +  + +   +L  +++   
Sbjct: 139 LIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHS 198

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y   I  LCKN  + ++ +L+  + +     ++  Y+ L+ G C  G L+ A 
Sbjct: 199 VKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAF 258

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  DV T++ +I  L  +G+M  A  +   M +  + P+V+T+ +LI G+
Sbjct: 259 SLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGY 318

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             +N+      + + M +  V P+    + ++D L K ++
Sbjct: 319 FFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKM 358



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 12/219 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK      A++L S+M  KG  PD +   T+   LFE  + ++A K+  EM   
Sbjct: 453 VMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIAR 512

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+    +          K   IV +V     ++      D+  Y  L+DG      L+ A
Sbjct: 513 GLQEARKVRL-------KEAKIVLAVMTKACIKP-----DVVTYGTLMDGYFLVNELKHA 560

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F+S+ +  +  +V  Y+IMI GL     +D+A  LF +M+   + PN++T+ +LI  
Sbjct: 561 KYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDA 620

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + +   + I LL +MKE  + PD    +I++D L K+
Sbjct: 621 LCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKS 659



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 103/214 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +C    I  A ++ + +L +G  P+ +  NTL  GL    ++++A    D++   
Sbjct: 103 ILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQ 162

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   I+GLCK G       L R L     + D+  Y+ +I  LCK+  L  A
Sbjct: 163 GFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDA 222

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  +VVTY+ +++G    G + +A  L  +M+   + P+V TF TLI  
Sbjct: 223 CDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDA 282

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +      +L  M +  + PD    + ++D
Sbjct: 283 LGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLID 316



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 70/168 (41%)

Query: 54  FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           FD M        T  +   +  L  N +    + LF+         D+   + L++  C 
Sbjct: 51  FDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCH 110

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
              +  A  +  ++ +     + +T + +I GL   G++ KA      +       N ++
Sbjct: 111 LTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVS 170

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           + TLI+G  +  E   V  LL K++  +V PD  + + ++  L KN++
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKL 218


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 123/218 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+  EIE + +L  E+   G  P+VVI+ TL  G  +  ++E+A  LF EM + 
Sbjct: 168 IVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKF 227

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+  TYT+ I GL KNG   +  E++  ++      ++  Y+C+++ LCK GR + A
Sbjct: 228 GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDA 287

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    +  ++VTY+ +I GL  + + ++A+++   M+ + + PN+IT+ TLI G
Sbjct: 288 FKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDG 347

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F  + +  K + L   +K + + P     +I+V    K
Sbjct: 348 FCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK 385



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  EIE A +L+ EM   G+  +   +  L  GLF+    ++ F+++++MQ  G
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHG 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   ++ LCK+G   ++ ++F  +R      +I  Y+ LI GLC+  +   A 
Sbjct: 264 VFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEAN 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  +++TY+ +I G     ++ KA  L  D++   ++P+++T+  L+ GF
Sbjct: 324 EVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  + S   +++ +M+E+ + P     +I++D  A+++
Sbjct: 384 CKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSD 422



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  KN   +    +Y +M   G+ P++  +N +   L +  + + AFK+FDEM+  
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRER 297

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY   I GLC+     E+ E+   ++      ++  Y+ LIDG C   +L  A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKA 357

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   L    L   +VTY+I++ G    G    A  +  +MEE  + P+ +T+  LI  
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDT 417

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R +   K I+L   M+E  + PD    S+++
Sbjct: 418 FARSDNMEKAIQLRSSMEELGLTPDVHTYSVLI 450



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C  +++  AL+L  ++ S+G+ P +V +N L  G  +      A K+  EM+  G
Sbjct: 344 LIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYTI ID   ++  + ++++L  ++  L    D+  YS LI G C  GR+  A 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEAS 463

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF S+       + V Y+ M+ G   +G   +A  LF +MEE  + PNV ++  +I   
Sbjct: 464 RLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVL 523

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +  +   L+ KM +  + P  SI++++    AKN+
Sbjct: 524 CKERKSKEAEGLVEKMIDSGIGPSDSILNLISR--AKND 560



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 6/238 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK+   + A  ++ EM  +G+  ++V +NTL  GL    +   A ++ D+M+ DG
Sbjct: 274 VMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDG 333

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG C    + +++ L R L+       +  Y+ L+ G CK G    A 
Sbjct: 334 INPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAG 393

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +    VTY+I+I        M+KA  L   MEE  + P+V T+  LIHGF
Sbjct: 394 KVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGF 453

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               R+NE S+   L   M EK   P+  I + +V    K   S  +L  F   E +E
Sbjct: 454 CIKGRMNEASR---LFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 107/202 (52%), Gaps = 1/202 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN Y +++ ++ ++  ++EM+ KG  P     N L   +       + +  F+E  + 
Sbjct: 99  VIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKI 157

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  ++ I I G C+ G I +S +L   LR      ++  Y+ LIDG CK G +E A
Sbjct: 158 KVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  + +  LVA+  TY+++IHGL+ +G   +  +++  M+E+ V PN+ T+  +++ 
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQ 277

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
             +        ++  +M+E+ V
Sbjct: 278 LCKDGRTKDAFKVFDEMRERGV 299



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK  +  GA  +  EM  +GIKP  V +  L         +E+A +L   M+  
Sbjct: 378 ILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEEL 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY++ I G C  G + E+  LF+++   K E +   Y+ ++ G CK G    A
Sbjct: 438 GLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L LF  +    L  +V +Y  MI  L  + +  +A  L   M ++ + P+
Sbjct: 498 LRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS 547



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +V DV ++ I+I G    G+++K+ DL +++ E   +PNV+ + TLI G  +  E  K  
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           +L  +M +  ++ +    ++++  L KN I       F ++E+ +E
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQ---GFEMYEKMQE 261


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C  K+++ A     EM+ +G+KPD   ++ L  GLF +++VE A + +D+ +R+G
Sbjct: 559 LISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++ IDG CK     E  E F  +     + +   Y+ LI   C+SGRL +AL
Sbjct: 619 MLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 678

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  +  TY+ +I G+    ++++A  LF +M    + PNV  +  LI G+
Sbjct: 679 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 738

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ +  KV  LL +M  KNV P+    ++++   A++
Sbjct: 739 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 776



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 98/183 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK +  E     + EM+SK ++P+ V++N L        ++  A +L ++M+  
Sbjct: 628 VMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 687

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ ++ TYT  I G+     + E+  LF  +R+   E ++  Y+ LIDG  K G++   
Sbjct: 688 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 747

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  + +TY++MI G   DG + +A  L  +M E  + P+ IT+   I+G
Sbjct: 748 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 807

Query: 181 FIR 183
           +++
Sbjct: 808 YLK 810



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C +   + AL    EML + + P   +  TL  GL +  +  +A +L+ +    G   DT
Sbjct: 459 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           RT    + GLC+ G + E+  + + +    C +D  +Y+ LI G C   +L+ A      
Sbjct: 519 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 578

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  D  TYSI+I GL+N  ++++A   + D + N + P+V T+  +I G  +   
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638

Query: 187 PSKVIELLHKMKEKNVMPDASI 208
             +  E   +M  KNV P+  +
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVV 660



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCKN + + A  L  EMLS G   +     ++   L      + A +   EM    
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++      T  I GLCK+G   +++EL+         +D +  + L+ GLC++G+L+ A 
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 538

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    L RG  V D V+Y+ +I G     ++D+A     +M +  + P+  T+  LI G
Sbjct: 539 RIQKEILGRGC-VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICG 597

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +N+  + I+     K   ++PD    S+++D   K E
Sbjct: 598 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 637



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 1   ILINGYCKNKEIEG---ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LI  YC   + +G   AL+++  + +KG+ P     N L   L   ++ ++  + FD +
Sbjct: 206 LLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV 265

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            + GV+ D   +T  I+  CK G + E+V+LF  +       ++  ++ +IDGL   GR 
Sbjct: 266 CK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 324

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A      +    +   ++TYSI++ GL    ++  A+ +  +M +    PNVI +  L
Sbjct: 325 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I  FI     +K IE+   M  K +   +S  + ++    KN
Sbjct: 385 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKN 426



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC++  +  AL L  +M  KGI P+   + +L  G+  I +VE A  LF+EM+ +G
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 723

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDG  K G +V+   L R +       +   Y+ +I G  + G +  A 
Sbjct: 724 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 783

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            L + +    +V D +TY   I+G    G
Sbjct: 784 RLLNEMREKGIVPDSITYKEFIYGYLKQG 812



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 35/239 (14%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-----------FEIHQVER-- 49
           IN +CK  ++E A+ L+S+M   G+ P+VV  NT+  GL           F+   VER  
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339

Query: 50  ----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
                                 A+ +  EM + G   +   Y   ID   + G + +++E
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +   +      L    Y+ LI G CK+G+ + A  L   +       +  +++ +I  L 
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 459

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +    D A     +M    ++P      TLI G  +  + SK +EL  +   K  + D 
Sbjct: 460 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  ++     L  EM SK + P+ + +  +  G      V  A +L +EM+  G
Sbjct: 734 LIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 793

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE 87
           +  D+ TY  FI G  K G ++E+ +
Sbjct: 794 IVPDSITYKEFIYGYLKQGGVLEAFK 819



 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           ++I GY ++  +  A  L +EM  KGI PD + +     G  +   V  AFK  DE
Sbjct: 768 VMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 823


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GY K  E+E A   ++EMLS G+ P+V I+  L  G  +   V  AF +F  +    
Sbjct: 527 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 586

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D +TY++ I GL +NG + E+  +F  L+      +   Y+ LI G CK G ++ A 
Sbjct: 587 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKAS 646

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D+VTY+I+I GL   G++++A +LF D+E   + PN +T+  ++ G+
Sbjct: 647 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 706

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +   P+   +LL +M  + V PDA I +++++   K E
Sbjct: 707 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEE 745



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 110/205 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+C  K    A  +  EM+  G+KP+ + +N L  G      +E+AF++ DEM   
Sbjct: 281 ILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVAC 340

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+   +   ++G+CK G + +++E+ + +     E D Q YS LI+G C+   +  A
Sbjct: 341 GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARA 400

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  L   V+TYS++I+GL   G +   + +  +M  N + PN + + TL+  
Sbjct: 401 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 460

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     +   +L +M+E+ ++PD
Sbjct: 461 HAKEGRVEESRMILERMREQGILPD 485



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  EIE A NL+ ++  +G+ P+ V +  +  G  +      AF+L +EM   
Sbjct: 666 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 725

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y + ++  CK     ++++LF+ + + K      +++ LI+G CKSG+L+ A
Sbjct: 726 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEM-LEKGFASTVSFNTLIEGYCKSGKLQEA 784

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +     + + VTY+ +I      G M +A  L+L+M+E  V P   T+ +L+HG
Sbjct: 785 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 844

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  I   S+V  L  +M  K + PD     +++D   +
Sbjct: 845 YHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCR 882



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +  +IE A  +  EM++ GI+ +++I NTL  G+ +  ++E+A ++  EM   G
Sbjct: 317 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 376

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D++TY++ I+G C+   +  + EL   ++  K    +  YS +I+GLC+ G L+   
Sbjct: 377 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 436

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  + V Y+ ++     +G+++++  +   M E  + P+V  + +LI GF
Sbjct: 437 AILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGF 496

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +    L +M E+ + P+A      +D  +K
Sbjct: 497 CKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 533



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 39/255 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+   ++G   +  EM+  G+KP+ V++ TL     +  +VE +  + + M+  
Sbjct: 421 VIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ 480

Query: 61  GVAADTRTYTIFIDGLCK-------NGYIVESVELFRTLR-------------------- 93
           G+  D   Y   I G CK         Y++E +E  R LR                    
Sbjct: 481 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE--RRLRPNAHTYGAFIDGYSKAGEME 538

Query: 94  --------ILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
                   +L C +  ++  Y+ LI+G CK G +  A  +F  +    ++ DV TYS++I
Sbjct: 539 IADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLI 598

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           HGL  +G+M +A  +F +++E  + PN  T+ +LI G  +     K  +LL +M  K + 
Sbjct: 599 HGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN 658

Query: 204 PDASIVSIVVDLLAK 218
           PD    +I++D L K
Sbjct: 659 PDIVTYNILIDGLCK 673



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 3/215 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  +N ++  A  ++SE+  KG+ P+   +N+L  G  +   V++A +L +EM   
Sbjct: 596 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK 655

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY I IDGLCK G I  +  LF  +       +   Y+ ++DG CKS     A
Sbjct: 656 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 715

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +L    L RGV   D   Y+++++    + + +KA DLF +M E   A + ++F TLI 
Sbjct: 716 FQLLEEMLLRGV-PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIE 773

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G+ +  +  +   LL +M EK  +P+    + ++D
Sbjct: 774 GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 808



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  ++E AL +  EM+ KG++PD   ++ L  G      + RAF+L DEM++  
Sbjct: 352 LLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 411

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY++ I+GLC+ G +  +  + R + +   + +   Y+ L+    K GR+E + 
Sbjct: 412 LAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESR 471

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    ++ DV  Y+ +I G     +M++A    ++M E  + PN  T+G  I G+
Sbjct: 472 MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGY 531

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  E        ++M    V+P+  I + +++
Sbjct: 532 SKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE 564



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 105/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K + ++ A+ L   M+ KG+ PD+  ++ L  G     +   A  +  EM   G+  +  
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   IDG  + G I ++  +   +     E ++  ++ L++G+CK+G++E ALE+   +
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  D  TYS++I G      M +A +L  +M++  +AP V+T+  +I+G  R    
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 432

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +L +M    + P+A + + ++   AK
Sbjct: 433 QGTNAILREMVMNGLKPNAVVYTTLMTAHAK 463



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 19/232 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y K   +  A+N++    +   +P ++  N+L   L + ++VE  +K+FD M   
Sbjct: 159 MLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAH 218

Query: 61  GVAADTRTYTIFIDGLCKNGYIV-----------------ESVELFRTLRILKCELDIQA 103
            V  D  TYT  I   CK G +                  E++EL R++       D+  
Sbjct: 219 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYT 278

Query: 104 YSCLIDGLCKSGR-LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           Y  LI+G C   R  E  L L   +  G L  + +TY+ +I G    G +++A  +  +M
Sbjct: 279 YDILINGFCMEKRSREAKLMLLEMIDVG-LKPEPITYNALIDGFMRQGDIEQAFRIKDEM 337

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  N+I + TL++G  +  +  K +E++ +M EK V PD+   S++++
Sbjct: 338 VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 389



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 6/185 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK+ +++ A +L  EM+ K   P+ V + +L     +   +  A +L+ EMQ   
Sbjct: 771 LIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERN 830

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V    +TYT  + G    G + E   LF  +     E D   Y  +ID  C+ G +  A 
Sbjct: 831 VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 890

Query: 122 E-----LFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +     L   +P +      + T S++  G    G MD+A ++   M +     N  + G
Sbjct: 891 KLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLG 950

Query: 176 TLIHG 180
            L+ G
Sbjct: 951 DLVDG 955


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GY K  E+E A   ++EMLS G+ P+V I+  L  G  +   V  AF +F  +    
Sbjct: 536 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 595

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D +TY++ I GL +NG + E+  +F  L+      +   Y+ LI G CK G ++ A 
Sbjct: 596 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKAS 655

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D+VTY+I+I GL   G++++A +LF D+E   + PN +T+  ++ G+
Sbjct: 656 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +   P+   +LL +M  + V PDA I +++++   K E
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEE 754



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 110/205 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+C  K    A  +  EM+  G+KP+ + +N L  G      +E+AF++ DEM   
Sbjct: 290 ILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVAC 349

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+   +   ++G+CK G + +++E+ + +     E D Q YS LI+G C+   +  A
Sbjct: 350 GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARA 409

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  L   V+TYS++I+GL   G +   + +  +M  N + PN + + TL+  
Sbjct: 410 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     +   +L +M+E+ ++PD
Sbjct: 470 HAKEGRVEESRMILERMREQGILPD 494



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  EIE A NL+ ++  +G+ P+ V +  +  G  +      AF+L +EM   
Sbjct: 675 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 734

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y + ++  CK     ++++LF+ + + K      +++ LI+G CKSG+L+ A
Sbjct: 735 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEM-LEKGFASTVSFNTLIEGYCKSGKLQEA 793

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +     + + VTY+ +I      G M +A  L+L+M+E  V P   T+ +L+HG
Sbjct: 794 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 853

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  I   S+V  L  +M  K + PD     +++D   +
Sbjct: 854 YHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCR 891



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +  +IE A  +  EM++ GI+ +++I NTL  G+ +  ++E+A ++  EM   G
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 385

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D++TY++ I+G C+   +  + EL   ++  K    +  YS +I+GLC+ G L+   
Sbjct: 386 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 445

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  + V Y+ ++     +G+++++  +   M E  + P+V  + +LI GF
Sbjct: 446 AILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGF 505

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +    L +M E+ + P+A      +D  +K
Sbjct: 506 CKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 542



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 39/255 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+   ++G   +  EM+  G+KP+ V++ TL     +  +VE +  + + M+  
Sbjct: 430 VIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ 489

Query: 61  GVAADTRTYTIFIDGLCK-------NGYIVESVELFRTLR-------------------- 93
           G+  D   Y   I G CK         Y++E +E  R LR                    
Sbjct: 490 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE--RRLRPNAHTYGAFIDGYSKAGEME 547

Query: 94  --------ILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
                   +L C +  ++  Y+ LI+G CK G +  A  +F  +    ++ DV TYS++I
Sbjct: 548 IADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLI 607

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           HGL  +G+M +A  +F +++E  + PN  T+ +LI G  +     K  +LL +M  K + 
Sbjct: 608 HGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN 667

Query: 204 PDASIVSIVVDLLAK 218
           PD    +I++D L K
Sbjct: 668 PDIVTYNILIDGLCK 682



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 3/215 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  +N ++  A  ++SE+  KG+ P+   +N+L  G  +   V++A +L +EM   
Sbjct: 605 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK 664

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY I IDGLCK G I  +  LF  +       +   Y+ ++DG CKS     A
Sbjct: 665 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 724

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +L    L RGV   D   Y+++++    + + +KA DLF +M E   A + ++F TLI 
Sbjct: 725 FQLLEEMLLRGV-PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIE 782

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G+ +  +  +   LL +M EK  +P+    + ++D
Sbjct: 783 GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 817



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  ++E AL +  EM+ KG++PD   ++ L  G      + RAF+L DEM++  
Sbjct: 361 LLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 420

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY++ I+GLC+ G +  +  + R + +   + +   Y+ L+    K GR+E + 
Sbjct: 421 LAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESR 480

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    ++ DV  Y+ +I G     +M++A    ++M E  + PN  T+G  I G+
Sbjct: 481 MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGY 540

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  E        ++M    V+P+  I + +++
Sbjct: 541 SKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE 573



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+ + ++ A+ L   M+ KG+ PD+  ++ L  G     +   A  +  EM   
Sbjct: 255 VIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   IDG  + G I ++  +   +     E ++  ++ L++G+CK+G++E A
Sbjct: 315 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   +    +  D  TYS++I G      M +A +L  +M++  +AP V+T+  +I+G
Sbjct: 375 LEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIING 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R         +L +M    + P+A + + ++   AK
Sbjct: 435 LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 472



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 35/249 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y K   +  A+N++    +   +P ++  N+L   L + ++VE  +K+FD M   
Sbjct: 150 MLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAH 209

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TYT  I   CK G + ++  +   +    C  ++  Y+ +I GLC++  L+ A
Sbjct: 210 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEA 269

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL  S+    LV D+ TY I+I+G   + +  +A  + L+M +  + P  IT+  LI G
Sbjct: 270 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 329

Query: 181 FIR-----------------------------------INEPSKVIELLHKMKEKNVMPD 205
           F+R                                     +  K +E++ +M EK V PD
Sbjct: 330 FMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 389

Query: 206 ASIVSIVVD 214
           +   S++++
Sbjct: 390 SQTYSLLIE 398



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  A  L+ EM  + + P    + +L  G   I  +     LF+EM   G
Sbjct: 815 LIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG 874

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY + ID  C+ G ++E+ +L   + +    + + AY  LI  LCK       L
Sbjct: 875 IEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVL 934

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L + +        + T S++  G    G MD+A ++   M +     N  + G L+ G
Sbjct: 935 KLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 993



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 74/146 (50%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           + + +D   K G++VE+V +F   +  +    + + + L+  L K  ++E+  ++F  + 
Sbjct: 148 FDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC 207

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              ++ DV TY+ MI      G +  A  + L+M E   +PN++T+  +I G  R     
Sbjct: 208 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLD 267

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVD 214
           + IEL   M +K ++PD     I+++
Sbjct: 268 EAIELKRSMVDKGLVPDLYTYDILIN 293



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 48/110 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ YC+   +  A  L  E+L KG+   V  ++ L   L +  +     KL +E+   
Sbjct: 884 VMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGES 943

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           G      T ++   G    G + E+ E+ R++       +  +   L+DG
Sbjct: 944 GFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 993


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 119/216 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK    + A  L+SEM ++ I PD +  + L  GL    +V  A KLF+EM + G
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG 280

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  IDG CK G + ++  L   +  +    ++  Y+ L DGLCKSG L+ A 
Sbjct: 281 FEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTAN 340

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H + R  L  ++ TY+ +++GL   G + +A  L  +M+E  + P+ IT+ TL+  +
Sbjct: 341 ELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAY 400

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +  E  K  ELL +M ++ + P     +++++ L 
Sbjct: 401 YKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLC 436



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G   + ++  A  L++EM+ KG +PD V +  L  G  ++ ++++AF L ++M + G
Sbjct: 256 LICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIG 315

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT   DGLCK+G +  + EL   +     +L+I  Y+ +++GLCK+G +  A+
Sbjct: 316 LTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAV 375

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ ++   Y  G+M KA +L  +M +  + P V+TF  L++G 
Sbjct: 376 KLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGL 435

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNS 225
               +      LL  M EK +MP+A+   SI+     +N + +++
Sbjct: 436 CMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRIST 480



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 115/212 (54%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+ ++     +  EM+ +G+ PD VI+ TL  G  ++   + A+KLF EM+   +  D+
Sbjct: 191 CKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDS 250

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             ++  I GL  +G +VE+ +LF  +     E D   Y+ LIDG CK G ++ A  L + 
Sbjct: 251 IAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQ 310

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  +VVTY+ +  GL   G++D A++L  +M    +  N+ T+ T+++G  +   
Sbjct: 311 MVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGN 370

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + ++L+ +MKE  + PD    + ++D   K
Sbjct: 371 ILQAVKLMEEMKEAGLHPDTITYTTLMDAYYK 402



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC   E++  + L  EM  KG+KP++  ++++ + L +  +V    K+  EM + G
Sbjct: 151 IIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRG 210

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT  IDG CK G    + +LF  +   +   D  A+S LI GL  SG++  A 
Sbjct: 211 VFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEAD 270

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ + +     D VTY+ +I G    G+M KA  L   M +  + PNV+T+  L  G 
Sbjct: 271 KLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGL 330

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E     ELLH+M  K +  + S  + +V+ L K
Sbjct: 331 CKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCK 367



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  E++ A  L+++M+  G+ P+VV +  L  GL +  +++ A +L  EM R G
Sbjct: 291 LIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKG 350

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ++GLCK G I+++V+L   ++      D   Y+ L+D   K+G +  A 
Sbjct: 351 LQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKAR 410

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L   VVT++++++GL   G+++    L   M E  + PN  T+ +++  +
Sbjct: 411 ELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQY 470

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N      E+   M  + V+PD++  +I++
Sbjct: 471 CIRNNMRISTEIYRGMCAQGVVPDSNTYNILI 502



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N   +  +I  A +L   M  KG  PDVV + T+  G   + ++++  +L  EMQ  
Sbjct: 115 ILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLK 174

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I  LCK+G +VE  ++ R +       D   Y+ LIDG CK G  + A
Sbjct: 175 GLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAA 234

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    +V D + +S +I GL   G++ +A  LF +M +    P+ +T+  LI G
Sbjct: 235 YKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDG 294

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + ++ E  K   L ++M +  + P+    + + D L K+
Sbjct: 295 YCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKS 333



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 35/249 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK+ E++ A  L  EM  KG++ ++  +NT+  GL +   + +A KL +EM+  G
Sbjct: 326 LADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG 385

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--- 118
           +  DT TYT  +D   K G +V++ EL R +     +  +  ++ L++GLC SG+LE   
Sbjct: 386 LHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE 445

Query: 119 --------------------------------IALELFHSLPRGVLVADVVTYSIMIHGL 146
                                           I+ E++  +    +V D  TY+I+I G 
Sbjct: 446 RLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGH 505

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                M +A  L  +M E        ++  LI GF +  +  +  +L  +M+ + ++  A
Sbjct: 506 CKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASA 565

Query: 207 SIVSIVVDL 215
            I ++ VD+
Sbjct: 566 EIYNLFVDM 574



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 100/195 (51%), Gaps = 16/195 (8%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           KP++ I N+        H VER    + +       +D   + +F   L + G + E+ +
Sbjct: 12  KPNLDISNSF------THFVERLIYTYKDW-----GSDPHVFDVFFQVLVEAGLLNEARK 60

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGR---LEIALELFHSLPRGVLVADVVTYSIMIH 144
            F   ++L   + + A SC +   C S +   L + L++F   P+  +  +  +Y+I+++
Sbjct: 61  FFD--KLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMN 118

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L+  G++ +AH L + ME     P+V+++ T+I G+  + E  KV++L+ +M+ K + P
Sbjct: 119 SLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKP 178

Query: 205 DASIVSIVVDLLAKN 219
           +    S ++ LL K+
Sbjct: 179 NLYTYSSIILLLCKS 193



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG C + ++E    L   ML KGI P+   +N++       + +  + +++  M   
Sbjct: 430 VLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQ 489

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+ TY I I G CK   + E+  L + +   +  L   +Y+ LI G  K  +L  A
Sbjct: 490 GVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEA 549

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
            +LF  + R  LVA    Y++ +   Y +G M+   +L
Sbjct: 550 RQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLEL 587



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+CK + ++ A  L+ EM+ K        +N L  G F+  ++  A +LF+EM+R+
Sbjct: 500 ILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRRE 559

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G+ A    Y +F+D   + G +  ++EL     I KC LD
Sbjct: 560 GLVASAEIYNLFVDMNYEEGNMETTLELCDE-AIEKCLLD 598


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 131/254 (51%), Gaps = 37/254 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G CK +++E    L ++   KG  P++V +NTL  G ++   VERA  LF E++  
Sbjct: 210 IMVRGLCKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMK 269

Query: 61  GVAADTRTYTIFIDGLCK-------NGYIVE-------------------------SVEL 88
           G    T TY I I+GLCK       +G +VE                          +E+
Sbjct: 270 GFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEV 329

Query: 89  FRTLRILK---CELDIQAYSCLIDGLCKSGRLEIALELF-HSLPRGVLVADVVTYSIMIH 144
            +TLR +    CE DI  Y+ LI G C+ G++  A EL  H++ RG L  + ++Y+ +IH
Sbjct: 330 GKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRG-LSPNKLSYTPLIH 388

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                G+  +A DLF+ M E     +++ +G L+HG +   E    + +  KM E+ V+P
Sbjct: 389 VYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLP 448

Query: 205 DASIVSIVVDLLAK 218
           DA++ +++++ L K
Sbjct: 449 DANVYNVLMNGLCK 462



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 102/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G     E++ AL +  +M+ +G+ PD  ++N L  GL +  ++  A  L  EM    
Sbjct: 421 LVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQN 480

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D       +DG  ++G + E+ +LF        +  +  Y+ +I G CK G +  AL
Sbjct: 481 LSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDAL 540

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +  G    D  TYS +I G      +  A  LF  M +    PNV+T+ +LI+GF
Sbjct: 541 TCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGF 600

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  + S+  +   +M+   + P+    +I++    K
Sbjct: 601 CRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCK 637



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 100/219 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK   +  A  L  EML + +  D  +  TL  G     +++ A KLF+     
Sbjct: 455 VLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAK 514

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   I G CK G + +++   + ++      D   YS +IDG  K   L  A
Sbjct: 515 GMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNA 574

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  + +     +VVTY+ +I+G    G   +A   F +M  + + PNV+T+  LI  
Sbjct: 575 LKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGC 634

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  + SK       M     +P+    + +++ L  N
Sbjct: 635 FCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNN 673



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G +PD+  +NTL  G     +V  A +L +   + G++ +  +YT  I   CK G  + +
Sbjct: 340 GCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRA 399

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIH 144
            +LF  +      LD+ AY  L+ GL  +G +++AL +   +  RGVL  D   Y+++++
Sbjct: 400 FDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVL-PDANVYNVLMN 458

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR---INEPSKVIEL 193
           GL   G++  A  L ++M    ++ +     TL+ GFIR   ++E  K+ EL
Sbjct: 459 GLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFEL 510



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 2/186 (1%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           PDV+  N L   L +  +VE A K+++EM +RDG   D  +  I + GLCK   + E  +
Sbjct: 168 PDVIACNALLNALIQQKKVEIARKVYEEMVKRDG-CWDNYSVCIMVRGLCKERKVEEGRK 226

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           L        C  +I  Y+ L+DG  K G +E A  LF  L     +    TY IMI+GL 
Sbjct: 227 LINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLC 286

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
                     L ++M+E  V  NV  + +++   I+     +V + L  + E    PD +
Sbjct: 287 KKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDIT 346

Query: 208 IVSIVV 213
             + ++
Sbjct: 347 TYNTLI 352



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 49/199 (24%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY K  ++  AL L+ +M+ +  KP+VV + +L  G        RA K F+EM+  G
Sbjct: 561 IIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSG 620

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
           +  +  TYTI I   CK G I ++   F  + + +C                        
Sbjct: 621 LKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSN 680

Query: 98  -------------------------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
                                    E  + AY+ ++  LC    +  AL+L   +    +
Sbjct: 681 KANESLEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGI 740

Query: 133 VADVVTYSIMIHGLYNDGQ 151
             D V+++ +++GL  +G+
Sbjct: 741 FPDPVSFAALVYGLCLEGR 759



 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 11  EIEGAL--NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           EI+ +L  + +  M+S G +  V  +N++ I L     V  A +L D+M   G+  D  +
Sbjct: 687 EIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVS 746

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ---AYSCLIDGLCKSGRLEIALELFH 125
           +   + GLC  G    S E   T+     E ++Q    YS  ++     G    A ++FH
Sbjct: 747 FAALVYGLCLEG---RSKEWKNTISCKLNEWELQIAVKYSQKLNPFLPKGLTSEASKVFH 803

Query: 126 SLPRGV 131
           +L  GV
Sbjct: 804 TLLEGV 809


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 114/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK  ++E    L  EM+ +GI+PD+  +N L  GL  + ++E A  L+ E +++G
Sbjct: 483 LILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNG 542

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I IDG CK   + E  +LF+ +  +K E +   Y  LI   C++G +  A 
Sbjct: 543 NFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAF 602

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +     TYS +IHGL N G +D A+ L  +M +  ++PNV+ +  LI G+
Sbjct: 603 RLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGY 662

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++ +  KV  +L +M   NV P+    +I+++
Sbjct: 663 CKLGQMHKVDSILQEMSINNVHPNKITYTIMIN 695



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 109/202 (53%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L+S + +KG+ P +   N L   L + ++V+ ++++FD M   GV  D   ++  ++  C
Sbjct: 149 LFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFC 208

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
             G + +++ELFR +  +    ++  Y+ +I GLCK+GRL+ A +    + +  +   +V
Sbjct: 209 TGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLV 268

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY ++I+GL    + D+A+ +  +M +   APN + + TLI G+ RI   S  +++   M
Sbjct: 269 TYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDM 328

Query: 198 KEKNVMPDASIVSIVVDLLAKN 219
               + P++   + ++    K+
Sbjct: 329 ISNGISPNSVTCNSLIQGYCKS 350



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 101/217 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C+N +   A+ L+  +L KG   + V  N L  GL E    E A KL  EM   
Sbjct: 412 LLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLER 471

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+ +Y   I   CK G + E  +L   +     + D+  Y+ L+ GLC  G++E A
Sbjct: 472 GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEA 531

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+H   +     D  TY IMI G     ++++   LF +M    +  N + +GTLI  
Sbjct: 532 GGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRA 591

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +       +   L   M+ + +   ++  S ++  L+
Sbjct: 592 YCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLS 628



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+GYCK   +E    L+ EM++  I+ + V++ TL     E   +  AF+L D+M+  
Sbjct: 552 IMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSR 611

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+   + TY+  I GL   G +  + +L   +R      ++  Y+ LI G CK G++   
Sbjct: 612 GIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKV 671

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  + +TY+IMI+G    G M  A  L  +M +  + P+ +T+  L +G
Sbjct: 672 DSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNG 731

Query: 181 FI---RINEPSKVIELL 194
           F    ++ E  KV +L+
Sbjct: 732 FCKEGKMEEALKVCDLM 748



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+   I  AL +  +M+S GI P+ V  N+L  G  + +Q+E A  L +EM   G
Sbjct: 308 LIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGG 367

Query: 62  VAADTRTY-----------------------------------TIFIDGLCKNGYIVESV 86
              +  T+                                   T+ + GLC+NG   E++
Sbjct: 368 GVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAI 427

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           EL+  L       +    + LI GLC++G  E A +L   +    LV D ++Y+ +I   
Sbjct: 428 ELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILAC 487

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++++   L  +M    + P++ T+  L+HG   + +  +   L H+ K+    PDA
Sbjct: 488 CKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDA 547

Query: 207 SIVSIVVDLLAK 218
               I++D   K
Sbjct: 548 YTYGIMIDGYCK 559



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 98/180 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC+N  +  A  L  +M S+GI      +++L  GL  I  V+ A +L DEM+++G
Sbjct: 588 LIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEG 647

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +   YT  I G CK G + +   + + + I     +   Y+ +I+G CK G ++ A 
Sbjct: 648 LSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAA 707

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + + +  +V D VTY+ + +G   +G+M++A  +   M    ++ + IT+ TLI G+
Sbjct: 708 KLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG----------------------------------- 26
           LI GYCK+ ++E A +L  EML+ G                                   
Sbjct: 343 LIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRN 402

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
            KP+  +   L  GL +  +   A +L+  +   G AA+T T    I GLC+ G   E+ 
Sbjct: 403 FKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAA 462

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +L + +      LD  +Y+ LI   CK G++E   +L   + R  +  D+ TY++++HGL
Sbjct: 463 KLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGL 522

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N G++++A  L+ + ++N   P+  T+G +I G+ + N   +  +L  +M    +  +A
Sbjct: 523 CNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNA 582

Query: 207 SIVSIVVDLLAKN 219
            +   ++    +N
Sbjct: 583 VVYGTLIRAYCEN 595



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L++   K  E++ +  ++  M   G+ PDV + +T+        +V+ A +LF +M++ 
Sbjct: 167 FLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKV 226

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  TY   I GLCKNG + E+ +    +   + +  +  Y  LI+GL K  R + A
Sbjct: 227 GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEA 286

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       + V Y+ +I G    G +  A  +  DM  N ++PN +T  +LI G
Sbjct: 287 NCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQG 346

Query: 181 FIRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAK 218
           + + N+      LL +M     V+   +  S++  L  K
Sbjct: 347 YCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLK 385



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 88/164 (53%)

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           F+LF  +   G+    +T    +  L K   +  S ++F  +       D+  +S +++ 
Sbjct: 147 FELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNA 206

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            C  GR++ A+ELF  + +  +  +VVTY+ +IHGL  +G++D+A      ME+  V P+
Sbjct: 207 FCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPS 266

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++T+G LI+G +++    +   +L +M ++   P+  + + ++D
Sbjct: 267 LVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLID 310



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K +  + A  +  EM  +G  P+ V++NTL  G   I  +  A ++ D+M  +
Sbjct: 272 VLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISN 331

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI------------------LKCELDIQ 102
           G++ ++ T    I G CK+  +  +  L   +                    LKC  D  
Sbjct: 332 GISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSA 391

Query: 103 -----------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                              + L+ GLC++G+   A+EL++ L      A+ VT + +IHG
Sbjct: 392 LLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHG 451

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G  ++A  L  +M E  +  + I++ TLI    +  +  +  +L  +M  + + PD
Sbjct: 452 LCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPD 511



 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 45/78 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK   ++ A  L +EM  KGI PD V +N L  G  +  ++E A K+ D M   
Sbjct: 692 IMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTG 751

Query: 61  GVAADTRTYTIFIDGLCK 78
           G++ D  TYT  IDG  K
Sbjct: 752 GISLDDITYTTLIDGWHK 769



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 61/114 (53%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+  L K+  ++++ ++F  +    +  DV  +S M++     G++D A +LF  ME+  
Sbjct: 168 LLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVG 227

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           VAPNV+T+  +IHG  +     +  +   KM+++ V P      ++++ L K E
Sbjct: 228 VAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLE 281



 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 45/101 (44%)

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +  ELF  L    L   + T + ++  L    ++  ++ +F  M    V P+V  F T++
Sbjct: 145 VVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMV 204

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + F         IEL  KM++  V P+    + ++  L KN
Sbjct: 205 NAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKN 245


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 6/205 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK  +++ A  L  EM  +G+K DV++H+TL  GL    +++ A + F  M  + 
Sbjct: 5   VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE- 63

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-----RTLRILKCELDIQAYSCLIDGLCKSGR 116
            + +  TY   ++GLCK   I E +ELF     R      CE D+ +YS +ID LCK+ R
Sbjct: 64  CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQR 123

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A E F  +       +VVTYS +I GL    ++D+A+ L + ++   + P  + +  
Sbjct: 124 VDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNA 183

Query: 177 LIHGFIRINEPSKVIELLHKMKEKN 201
           +++GF R  +PS+ +ELL  MKEK 
Sbjct: 184 VVNGFKRQGKPSECLELLLHMKEKG 208



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 110/187 (58%), Gaps = 6/187 (3%)

Query: 33  IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           ++ T+  G  +  QV++AF+L DEM+  GV  D   ++  I GLC+ G I E++E F+++
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-----DVVTYSIMIHGLY 147
              +C  ++  Y+ +++GLCK+ R++  LELF  + +    +     DV++YS +I  L 
Sbjct: 61  G-EECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
              ++DKA++ F  M     APNV+T+ +LI G  +++   +   LL ++K ++++P A 
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 208 IVSIVVD 214
             + VV+
Sbjct: 180 YYNAVVN 186



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           LI G C+   I+ AL  +  M  +   P+V+ +NT+  GL + ++++   +LFD+M++  
Sbjct: 40  LIQGLCRKGRIDEALEQFKSM-GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRY 98

Query: 61  ----GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
               G   D  +Y+  ID LCK   + ++ E F+ +R + C  ++  YS LIDGLCK  R
Sbjct: 99  EASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDR 158

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A  L   L    +V   + Y+ +++G    G+  +  +L L M+E     N+I F  
Sbjct: 159 VDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNA 218

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++H   + +E  K  +   ++ +    P+    ++ V  L K
Sbjct: 219 MLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCK 260



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 127/272 (46%), Gaps = 43/272 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEM-----LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           ++NG CK   I+  L L+ +M      S G +PDV+ ++T+   L +  +V++A++ F  
Sbjct: 74  VVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKR 133

Query: 57  MQRDGVAADTRTYTIFIDGLCK-----------------------------------NGY 81
           M+  G A +  TY+  IDGLCK                                    G 
Sbjct: 134 MRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGK 193

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
             E +EL   ++     ++I  ++ ++  L K+   E A + F  L +     +VVTY++
Sbjct: 194 PSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNV 253

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
            +HGL   G++D+A+ + L+M E+ V P+VIT+ ++I GF +     K  ++  +M    
Sbjct: 254 AVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHE 313

Query: 202 VMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
            +P       ++   ++++    S  +F VHE
Sbjct: 314 CIPHPVTFMTLLHGFSEHK---KSREAFRVHE 342



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ +  +    L L   M  KG   +++  N +   L++  + E+A + F+ + + G
Sbjct: 184 VVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSG 243

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + + GLCK G + E+  +   +   K   D+  YS +IDG CK+GR++ A 
Sbjct: 244 KKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 303

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +     +   VT+  ++HG     +  +A  +  DM      P + T+  L+   
Sbjct: 304 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +     +E+ HKMK K   PDA+  + ++  L +
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCR 400



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 103/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   KN E E A   +  +L  G KP+VV +N    GL +  +V+ A+++  EM    
Sbjct: 219 MLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESK 278

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG CK G + ++ ++F  + + +C      +  L+ G  +  +   A 
Sbjct: 279 VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAF 338

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     +  + TY++++  +     ++ A +++  M+     P+  T+  LI   
Sbjct: 339 RVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCL 398

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R     +  E L  M+  NV+P+ +I   +V++L K 
Sbjct: 399 CRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQ 436



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 6/155 (3%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           YT  I+G CK G + ++ EL   ++    ++D+  +S LI GLC+ GR++ ALE F S+ 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE-----NAVAPNVITFGTLIHGFIR 183
                 +V+TY+ +++GL    ++D+  +LF DME+     +   P+VI++ T+I    +
Sbjct: 62  EEC-SPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                K  E   +M+     P+    S ++D L K
Sbjct: 121 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCK 155



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 112/245 (45%), Gaps = 28/245 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + ++G CK  +++ A  +  EM+   + PDV+ ++++  G  +  ++++A  +F  M   
Sbjct: 253 VAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVH 312

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  T+   + G  ++    E+  +   +        +Q Y+ L+D +C +  +E A
Sbjct: 313 ECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESA 372

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE++H + R     D  TY+ +I  L    ++D+A + FLD+ E   A NV+  G + H 
Sbjct: 373 LEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKE-FLDVME---ADNVVPNGAICHA 428

Query: 181 FIRI-----------------------NEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLL 216
            + +                        EP + +E++ +M  K V PD A+ V+++  L 
Sbjct: 429 LVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLC 488

Query: 217 AKNEI 221
             + +
Sbjct: 489 GLDRV 493



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 16/216 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  C    +E AL +Y +M  K  +PD   +  L   L    +V+ A +  D M+ D
Sbjct: 358 VLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEAD 417

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +       ++ LCK G + E+  +                   +  +CK+G  + A
Sbjct: 418 NVVPNGAICHALVEVLCKQGEVDEACSVLDN----------------VVEICKAGEPDEA 461

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  D  TY  ++  L    ++D A   F  M     AP ++T+  LI  
Sbjct: 462 VEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGE 521

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
               +       +   M      P A  +  +   L
Sbjct: 522 ACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCL 557


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G  +I  ++  F+L   MQ  
Sbjct: 141 ILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 XCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDA 365



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 93/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +       D  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+     PNV+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L S M + G+ PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E++R +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKK 394



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 103/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     +LL +M+    +P+
Sbjct: 391 XCKKGDVWTGSKLLKEMQRXGYVPN 415



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +   CK G I  +  +F ++        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L   +    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 231 EMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 61/116 (52%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+   CK G + +A  +F S+ +  L   VV+++ +++G    G +D+   L   M+
Sbjct: 139 FNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++     EL  +M +  ++P+    + ++D   KN
Sbjct: 199 ASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKN 254


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 118/214 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+C+   +  A  L+ EMLS+G+KPD + + T  +G  ++    +AF + +EM+ +
Sbjct: 422 ILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAE 481

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY + I+GLCK G   ++ EL + +R+     D   Y+ +I     SG L  A
Sbjct: 482 GFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKA 541

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F  + +  +   VVTY+++IH     G++D A   F +M++  V+PNVIT+  LI+G
Sbjct: 542 EEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYG 601

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             + N       L  +M+ K V P+    +I+++
Sbjct: 602 LCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN 635



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK +  E A +L  EML +G  P VV +NT+   L  + +V  A +  D M  + 
Sbjct: 283 LIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNED 342

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G  + G   E++ LF  LR       +  Y+ LIDG C++G L+IA 
Sbjct: 343 LMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAK 402

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  L  DVVT++I++ G    G +  A +LF +M    + P+ I + T I G 
Sbjct: 403 GMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGE 462

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +++  PSK   +  +MK +   PD    +++++ L K
Sbjct: 463 LKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCK 499



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY +      AL L+SE+ SK + P VV +NTL  G      ++ A  + D+M + G
Sbjct: 353 LIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHG 412

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+TI + G C+ G +  + ELF  +     + D  AY+  I G  K G    A 
Sbjct: 413 LCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAF 472

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       D++TY+++I+GL   G  D A++L   M    + P+ +T+ ++IH  
Sbjct: 473 GMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAH 532

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +      K  E+   M +K + P     ++++
Sbjct: 533 LISGLLRKAEEVFSDMLKKGIHPSVVTYTVLI 564



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +YS M+   I+P +V  NT+     +  +V RA ++ D M+  G   +  +Y + ++GL 
Sbjct: 194 VYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLS 253

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADV 136
             G    + EL   + +L  ++    Y+ LI G CK    E A +L    L RG L   V
Sbjct: 254 GKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGAL-PTV 312

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VTY+ +++ L   G++  A      M    + P+++++ TLI+G+ R+   ++ + L  +
Sbjct: 313 VTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSE 372

Query: 197 MKEKNVMPDASIVSIVVD 214
           ++ KN++P     + ++D
Sbjct: 373 LRSKNLVPSVVTYNTLID 390



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + K   +E  L ++ +M++ G+ PDV   N +   L +   V    +++  M + 
Sbjct: 142 LLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKC 201

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     T+   +D  CK G +  +VE+   +R+  C+ +  +Y+ L++GL   G  + A
Sbjct: 202 QIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRA 261

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L     TY+ +I G       ++A+DL  +M      P V+T+ T+++ 
Sbjct: 262 KELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYS 321

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             R+   S     L  M  +++MPD
Sbjct: 322 LCRLGRVSDARRYLDVMVNEDLMPD 346



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPD-----VVIHNTLFIGLFEIHQVERAFKLFD 55
           +LING CK    + A  L  +M  +GI PD      +IH  L  GL     + +A ++F 
Sbjct: 492 VLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGL-----LRKAEEVFS 546

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           +M + G+     TYT+ I      G +  + + F  ++      ++  Y+ LI GLCK  
Sbjct: 547 DMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKEN 606

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            +++A  LF  +    +  +  TY+I+I+   N      A  L+ DM +  + P+  T  
Sbjct: 607 MMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHS 666

Query: 176 TLI 178
            L+
Sbjct: 667 ALM 669



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ Y     ++ A   + EM  KG+ P+V+ +N L  GL + + ++ A+ LF EM+  
Sbjct: 562 VLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESK 621

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TYTI I+      Y  ++++L++ +   + + D   +S L+  L K  +L   
Sbjct: 622 GVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAV 681

Query: 121 LELFHSLPRGVL 132
           L L  +LP  ++
Sbjct: 682 LRL-ENLPLAIV 692



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  +  E      ++S+ML KGI P VV +  L        +++ A K FDEMQ  G
Sbjct: 533 LISGLLRKAE-----EVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKG 587

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY   I GLCK   +  +  LF  +       +   Y+ LI+        + AL
Sbjct: 588 VSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDAL 647

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +    +  D  T+S ++  L  D ++       L +E   +A   I    +  GF
Sbjct: 648 KLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAV----LRLENLPLAIVEINSTWIAEGF 703

Query: 182 IRINE 186
           +++ E
Sbjct: 704 VKLEE 708


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 123/220 (55%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A +LYSEM+SKGI P+VV ++ L  G F + +++ A  LF++M  + 
Sbjct: 233 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISEN 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +D  CK+G I  +++L   +       +I  YS ++D LCK+ R++ A+
Sbjct: 293 IKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAV 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  ++ TY+I+I GL   G+++ A ++F D+        V+T+  + +GF
Sbjct: 353 ALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGF 412

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV-VDLLAKNE 220
            +     +   LL KM+E   +PDA    ++ + L  K E
Sbjct: 413 CKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGE 452



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 114/212 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K     L L  +M  +GIKP++V  N L     ++  +  AF +F ++ + G   +T 
Sbjct: 99  KSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTI 158

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+T  I GLC  G I +++     L  L  + +  +Y  LIDGLCK G    AL+L   +
Sbjct: 159 TFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRV 218

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  +VV YS +I G+  D  ++ A DL+ +M    ++PNV+T+  LI GF  + + 
Sbjct: 219 DGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKL 278

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              ++L +KM  +N+ PD    +I+VD+  K+
Sbjct: 279 KDAVDLFNKMISENIKPDVYTFNILVDVFCKS 310



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+   I  A ++++++L  G  P+ +   TL  GL    Q+ +A    D++   
Sbjct: 127 ILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVAL 186

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y   IDGLCK G    +++L R +     + ++  YS +IDG+CK   +  A
Sbjct: 187 GFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDA 246

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  +VVTYS +I G +  G++  A DLF  M    + P+V TF  L+  
Sbjct: 247 FDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDV 306

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  + S  ++L+ +M ++   P+    S ++D L K
Sbjct: 307 FCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCK 344



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 112/216 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  ALN + ++++ G + + + + TL  GL ++ +   A  L   +    
Sbjct: 163 LIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKL 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y+  IDG+CK+ ++ ++ +L+  +       ++  YS LI G    G+L+ A+
Sbjct: 223 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAV 282

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  DV T++I++      G++  A  L  +M +    PN++T+ +++   
Sbjct: 283 DLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 342

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            + +   K + LL K+K++ + P+    +I++D L 
Sbjct: 343 CKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLC 378



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 86/163 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  AL L  EM  +G  P++V ++++   L + H+V++A  L  +++  
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQ 361

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYTI IDGLC +G + ++  +F  L +   ++ +  Y  +  G CK G  + A
Sbjct: 362 GIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEA 421

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
             L   +     + D  TY ++   L+  G+ D A  L  + E
Sbjct: 422 SALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKLHRECE 464



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 82/176 (46%)

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           + V+ A  LF+ + R         +   +  L K+ +    + L + +     + ++   
Sbjct: 66  NDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNC 125

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI+  C+ G +  A  +F  + +     + +T++ +I GL   GQ+ +A +    +  
Sbjct: 126 NILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVA 185

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                N I++GTLI G  ++ E    ++LL ++  K V P+  + S ++D + K++
Sbjct: 186 LGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDK 241


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK K +  A +L+SEM+SKGI PDVV ++ L  G   + +++ A  LF++M  + 
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILEN 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVE-----------------------------------SV 86
           +  D  T+ I ++  CK+G + E                                   + 
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F T+       DIQ+YS +I+G CK  + + A+ LF  + R  ++ DVVTYS +I GL
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGL 410

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++  A  L   M +  V PN+ T+ +++    + ++  K I LL K K+K   PD 
Sbjct: 411 SKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDI 470

Query: 207 SIVSIVVDLLAKN 219
           S  SI++  L ++
Sbjct: 471 STYSILIKGLCQS 483



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 108/197 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K+ + A+NL+ EM  K I PDVV +++L  GL +  ++  A +L D+M   
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   +D LCK   + +++ L    +    + DI  YS LI GLC+SG+LE A
Sbjct: 430 GVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDA 489

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       DV  Y+IMI G   +G  ++A  L   ME+N   P+  T+  +I  
Sbjct: 490 RKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILS 549

Query: 181 FIRINEPSKVIELLHKM 197
             + +E     +LL +M
Sbjct: 550 LFKKDENDMAEKLLREM 566



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 122/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E   AL+L   +    ++P+VV++NT+   + ++  V  AF LF EM   G
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I G C  G + ++++LF  + +   + D+  ++ L++  CK G+++   
Sbjct: 256 ISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  + VTY+ ++ G     +++KA  +F  M +  V P++ ++  +I+GF
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I +  + + L  +M  KN++PD    S ++D L+K+
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKS 413



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 36/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +CK+ +++    ++  M+ +GIKP+ V +N+L  G   + +V +A  +F+ M + 
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D ++Y+I I+G CK     E++ LF+ +       D+  YS LIDGL KSGR+  A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 121 LELFHSL-PRGV----------------------------------LVADVVTYSIMIHG 145
           L+L   +  RGV                                     D+ TYSI+I G
Sbjct: 420 LQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKG 479

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+++ A  +F D+       +V  +  +I GF      ++ + LL KM++   +PD
Sbjct: 480 LCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPD 539

Query: 206 ASIVSIVV-DLLAKNE 220
           A    I++  L  K+E
Sbjct: 540 AKTYEIIILSLFKKDE 555



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 108/212 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K     L L  +M  +GIKP++V  N L     ++  +  AF +F ++ + G   DT 
Sbjct: 97  KSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTI 156

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+T    GLC  G I ++      +  L    D  +Y  LI GLCK G    AL+L   +
Sbjct: 157 TFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  +VV Y+ +I  +     +++A DLF +M    ++P+V+T+  LI GF  + + 
Sbjct: 217 DGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKL 276

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              I+L +KM  +N+ PD    +I+V+   K+
Sbjct: 277 KDAIDLFNKMILENIKPDVYTFNILVNAFCKD 308



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L  G C   +I+ A   + ++++ G   D + + TL  GL ++ +   A  L   +  + 
Sbjct: 161 LSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL 220

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   ID +CK   + E+ +LF  +       D+  YS LI G C  G+L+ A+
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAI 280

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  DV T++I+++    DG+M +   +F  M +  + PN +T+ +L+ G+
Sbjct: 281 DLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E +K   + + M +  V PD    SI+++   K
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCK 377



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 82/177 (46%), Gaps = 6/177 (3%)

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           + V+ A  LF+ + R         +   +  L K+ +    + L + +     + ++   
Sbjct: 64  NDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC 123

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA---HDLFLD 161
           + LI+  C+ G +  A  +F  + +   V D +T++ +  GL   GQ+ +A   HD  + 
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVA 183

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +       + I++GTLIHG  ++ E    ++LL ++    V P+  + + ++D + K
Sbjct: 184 L---GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCK 237


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 42/279 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C    +  A  + + M   G   ++V +N L  GL  +H+V +A +L DEM   G
Sbjct: 333 VIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLG 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR---------------ILKCE-------- 98
           +  D+ TY+I I G CK   +  + +L  T+R               +  CE        
Sbjct: 393 LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERAR 452

Query: 99  -----------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
                      LD+ AYS +I G CK+G L+ A EL  S+    L  D VTYSI+I+   
Sbjct: 453 NLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFA 512

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G M+ A+ +   M  +   P+V  F +LI G+    E +KV+EL+ +M  KN+  D+ 
Sbjct: 513 KSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSK 572

Query: 208 IVSIV-VDLLAKNEIS--LNSLPSFTVHERQEEVDESNV 243
           I+S +   L+A NE    L SLP F+      E+ + N+
Sbjct: 573 IISTLSTSLVASNEGKALLQSLPDFSA-----EISKGNI 606



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 112/204 (54%), Gaps = 1/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C ++  + A+ L   M S G++ DVV + TL  GL +  +V++A +L  EM   
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCES 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y+  + G CK+G   +  ++F  +     E D+  Y+ LID LCK G+ + A
Sbjct: 180 GIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + R  L  +VVTY+++I+ +  +G + +A  +   M E  VAP+V+T+ TLI G
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 181 FIRINEPSKVIELLHKM-KEKNVM 203
              + E  + + LL +M + KN++
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGKNIV 323



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 38/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  CK   ++ A+ +  +M  KG+ PDVV +NTL  GL ++ +++ A  L +EM R 
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG 319

Query: 61  -------------------------------------GVAADTRTYTIFIDGLCKNGYIV 83
                                                G   +  TY + I GL +   + 
Sbjct: 320 KNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVR 379

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           +++EL   +  L  E D   YS LI G CK  +++ A +L  ++    +  ++  Y  ++
Sbjct: 380 KAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             +   G M++A +LF +M+ N    +V+ + T+IHG  +  +     ELL  + ++ + 
Sbjct: 440 VAMCEQGMMERARNLFNEMDNN-FPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLT 498

Query: 204 PDASIVSIVVDLLAKN 219
           PDA   SIV+++ AK+
Sbjct: 499 PDAVTYSIVINMFAKS 514



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           +P+ V +  L   L      ++A  L   M+  GV AD  TY   I GLC    + ++VE
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           L   +     E ++  YS L+ G CKSGR E   ++F  +    +  DVV Y+ +I  L 
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             G+  KAH +   M    + PNV+T+  LI+   +     + I +L KM EK V PD
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRI---LKCELDIQAYSCLIDGLCKSGRLEIAL 121
           D  +Y   +  LC+ G+   +  L R + +     C  +  +Y+ L+  LC     + A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    + ADVVTY  +I GL +  ++DKA +L  +M E+ + PNV+ + +L+ G+
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +      V ++  +M EK + PD  + + ++D L K
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 42/279 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C    +  A  + + M   G   ++V +N L  GL  +H+V +A +L DEM   G
Sbjct: 333 VIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLG 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR---------------ILKCE-------- 98
           +  D+ TY+I I G CK   +  + +L  T+R               +  CE        
Sbjct: 393 LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERAR 452

Query: 99  -----------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
                      LD+ AYS +I G CK+G L+ A EL  S+    L  D VTYSI+I+   
Sbjct: 453 NLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFA 512

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G M+ A+ +   M  +   P+V  F +LI G+    E +KV+EL+ +M  KN+  D+ 
Sbjct: 513 KSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSK 572

Query: 208 IVSIV-VDLLAKNEIS--LNSLPSFTVHERQEEVDESNV 243
           I+S +   L+A NE    L SLP F+      E+ + N+
Sbjct: 573 IISTLSTSLVASNEGKALLQSLPDFSA-----EISKGNI 606



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 112/204 (54%), Gaps = 1/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C ++  + A+ L   M S G++ DVV + TL  GL +  +V++A +L  EM   
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCES 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y+  + G CK+G   +  ++F  +     E D+  Y+ LID LCK G+ + A
Sbjct: 180 GIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + R  L  +VVTY+++I+ +  +G + +A  +   M E  VAP+V+T+ TLI G
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 181 FIRINEPSKVIELLHKM-KEKNVM 203
              + E  + + LL +M + KN++
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGKNIV 323



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 38/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  CK   ++ A+ +  +M  KG+ PDVV +NTL  GL ++ +++ A  L +EM R 
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG 319

Query: 61  -------------------------------------GVAADTRTYTIFIDGLCKNGYIV 83
                                                G   +  TY + I GL +   + 
Sbjct: 320 KNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVR 379

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           +++EL   +  L  E D   YS LI G CK  +++ A +L  ++    +  ++  Y  ++
Sbjct: 380 KAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             +   G M++A +LF +M+ N    +V+ + T+IHG  +  +     ELL  + ++ + 
Sbjct: 440 VAMCEQGMMERARNLFNEMDNN-FPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLT 498

Query: 204 PDASIVSIVVDLLAKN 219
           PDA   SIV+++ AK+
Sbjct: 499 PDAVTYSIVINMFAKS 514



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           +P+ V +  L   L      ++A  L   M+  GV AD  TY   I GLC    + ++VE
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           L   +     E ++  YS L+ G CKSGR E   ++F  +    +  DVV Y+ +I  L 
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             G+  KAH +   M    + PNV+T+  LI+   +     + I +L KM EK V PD
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRI---LKCELDIQAYSCLIDGLCKSGRLEIAL 121
           D  +Y   +  LC+ G+   +  L R + +     C  +  +Y+ L+  LC     + A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    + ADVVTY  +I GL +  ++DKA +L  +M E+ + PNV+ + +L+ G+
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +      V ++  +M EK + PD  + + ++D L K
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 124/217 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G CK+K +  A +LYSEM+SKGI P+VV ++ L  G F + +++ A  LF+++  + 
Sbjct: 83  VIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILEN 142

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +DG CK+  + E   +F  +       D+  Y+ L+DG      +  A 
Sbjct: 143 IKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAK 202

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++ +G +  D+ +Y+I+I+G     ++DKA +LF +M    + PNV+T+ +LI G 
Sbjct: 203 SIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGL 262

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  ++L+ +M ++ V P+    + ++D L K
Sbjct: 263 SKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFK 299



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 106/183 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK+++++    +++ M+ +GI PDVV +N+L  G   + +V  A  +F+ M + 
Sbjct: 152 ILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQG 211

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D R+Y I I+G CK   + +++ LF  +       ++  Y+ LIDGL KSGR+  A
Sbjct: 212 GVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 271

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +  +++TY+ +I  L+   Q+DKA  L    ++  + P++ T+  LI G
Sbjct: 272 LQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDG 331

Query: 181 FIR 183
             +
Sbjct: 332 LCK 334



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 121/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E   AL+L   +  K ++ + V++NT+  G+ +   V  AF L+ EM   G
Sbjct: 48  LIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKG 107

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+  I G    G + ++++LF  + +   + D   ++ L+DG CK  +++   
Sbjct: 108 ISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGK 167

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  ++ DVVTY+ ++ G     +++ A  +F  M +  V P++ ++  LI+GF
Sbjct: 168 TVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGF 227

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I +  K + L ++M  KN++P+    + ++D L+K+
Sbjct: 228 CKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKS 265



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 75/127 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK K+++ A+NL++EM  K I P+VV +N+L  GL +  ++  A +L D+M   
Sbjct: 222 ILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDR 281

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   ID L K   + +++ L    +    +  +  Y+ LIDGLCK GRL+ A
Sbjct: 282 GVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDA 341

Query: 121 LELFHSL 127
             +F  L
Sbjct: 342 RNIFEDL 348



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 82/160 (51%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T T    I GLC  G I ++      L  L   LD  +Y  LI GLCK G    A
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +   ++  + V Y+ +I+G+  D  ++ A DL+ +M    ++PNV+T+  LI G
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F  + +    I+L +K+  +N+ PD    +I+VD   K+ 
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDR 161



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  A   + ++++ G   D V + TL  GL ++ +   A  L   +    
Sbjct: 13  LIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKL 72

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   I G+CK+ ++ ++ +L+  +       ++  YS LI G    G+L+ A+
Sbjct: 73  VQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAI 132

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  D  T++I++ G   D +M +   +F  M +  + P+V+T+ +L+ G+
Sbjct: 133 DLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGY 192

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E +    + + M +  V PD    +I+++   K
Sbjct: 193 RLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCK 229



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 87/161 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY   KE+  A ++++ M   G+ PD+  +N L  G  +I +V++A  LF+EM    
Sbjct: 188 LVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKN 247

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDGL K+G I  +++L   +       +I  Y+ +ID L K+ +++ A+
Sbjct: 248 IIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAI 307

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            L        +   + TY+I+I GL   G++  A ++F D+
Sbjct: 308 ALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P+ +  NTL  GL    Q+ +AF   D++   G   D  +Y   I GLCK G    +
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           ++L + +     +L+   Y+ +I G+CK   +  A +L+  +    +  +VVTYS +I G
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            +  G++  A DLF  +    + P+  TF  L+ GF +  +  +   +   M ++ ++PD
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 181

Query: 206 ASIVSIVVD 214
               + +VD
Sbjct: 182 VVTYNSLVD 190


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+N E   A++L  EM    + PDV  +NT+  G  E  ++E+A +L +EM+  
Sbjct: 147 ILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I ID  CK G + E++   + ++ +  E D+  Y+ LI G C  G L+  
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             LF   L RG      +TY+ +I G    GQ+ +A ++F  M E  V PNV T+  LI 
Sbjct: 267 KALFDEVLERGDSPC-AITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G   + +  + ++LL+ M EK+  P+A   +I+++ L K+
Sbjct: 326 GLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD 365



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 106/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +  AL++Y  ++ K    D V  N L     +   V +A +L+ ++    
Sbjct: 430 LIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSK 489

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ TYT  IDG CK G +  +  L   +R+ + +  +  Y+CL+  LCK G L+ A 
Sbjct: 490 IVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAW 549

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R     DVV+++IMI G    G +  A  L + M    ++P++ T+  LI+ F
Sbjct: 550 RLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRF 609

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +++    + I    KM +    PDA I   V+
Sbjct: 610 LKLGYLDEAISFFDKMVDSGFEPDAHICDSVL 641



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 109/216 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  Y + ++   A  + + ML +G   +V  HN L  GL    +  +A  L  EM+R+ 
Sbjct: 113 LLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNS 172

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G C+   + +++EL   ++   C   +  +  LID  CK+G+++ A+
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM 232

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L AD+V Y+ +I G  + G++D+   LF ++ E   +P  IT+ TLI GF
Sbjct: 233 GFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            ++ +  +  E+   M E+ V P+    + ++D L 
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLC 328



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 110/210 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK  +++ A+    EM   G++ D+V++ +L  G  +  +++R   LFDE+   
Sbjct: 217 ILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    TY   I G CK G + E+ E+F  +       ++  Y+ LIDGLC  G+ + A
Sbjct: 277 GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L + +       + VTY+I+I+ L  DG +  A ++   M++    P+ IT+  L+ G
Sbjct: 337 LQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGG 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
                +  +  +LL+ M + +   D  ++S
Sbjct: 397 LCAKGDLDEASKLLYLMLKDSSYTDPDVIS 426



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           IL+ G C   +++ A  L   ML  S    PDV+ +N L  GL + +++ +A  ++D + 
Sbjct: 392 ILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLV 451

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
               A D  T  I ++   K G + +++EL++ +   K   +   Y+ +IDG CK+G L 
Sbjct: 452 EKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLN 511

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +A  L   +    L   V  Y+ ++  L  +G +D+A  LF +M+ +   P+V++F  +I
Sbjct: 512 VAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMI 571

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G ++  +      LL  M    + PD    S +++   K
Sbjct: 572 DGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLK 611



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 36/240 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK   +  A  L  +M    ++P V  +N L   L +   +++A++LF+EMQRD 
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  ++ I IDG  K G                   DI++   L+ G+ ++G      
Sbjct: 560 NFPDVVSFNIMIDGSLKAG-------------------DIKSAESLLVGMSRAG------ 594

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                     L  D+ TYS +I+     G +D+A   F  M ++   P+     +++   
Sbjct: 595 ----------LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYC 644

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS-FTVHERQEEVDE 240
           I   E  K+ EL+ K+ +K+++ D  +   V+D +  +  +++       V + +EE D+
Sbjct: 645 ISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTDDKEERDK 704



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L RG    +V  ++I++ GL  + +  KA  L  +M  N++ P+V ++ T+I GF    E
Sbjct: 134 LKRG-FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             K +EL ++MK            I++D   K
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCK 224


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 109/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C+  E+E A  L  EM ++ +  D V +  L  G  +  ++  AF++ + M + G
Sbjct: 402 MINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRG 461

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT   DGLCK G +  + EL   +     EL+   Y+ LI+GLCK+G LE A+
Sbjct: 462 VTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAM 521

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  DV TY+ +I  L   G +D+AH L  +M +  + P ++T+  L++GF
Sbjct: 522 RTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 581

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                     +LL  M EKN+ P+A+
Sbjct: 582 CMSGRVEGGKKLLDWMLEKNIHPNAA 607



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 113/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK  ++  A  +++ M+ +G+ P+VV +  L  GL +   V+ A +L  EM   
Sbjct: 436 VLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNK 495

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK GY+ +++     +     + D+  Y+ LID LCKSG L+ A
Sbjct: 496 GLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRA 555

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +   +VTY+++++G    G+++    L   M E  + PN  T+ +L+  
Sbjct: 556 HSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQ 615

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +   N      E+   M+ ++V P+ +  +I++
Sbjct: 616 YCIENNMKSTTEIYKGMRSRDVGPNENTYNILI 648



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C   ++  A   + EM  KG+  D V + T+  GL    ++E A KL  EM    
Sbjct: 367 VLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARR 426

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ IDG CK G + E+ ++   +       ++  Y+ L DGLCK G ++ A 
Sbjct: 427 LDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAAN 486

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  +  TY+ +I+GL   G +++A     DM+   + P+V T+ TLI   
Sbjct: 487 ELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDAL 546

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +  +  +   LL +M +K + P
Sbjct: 547 CKSGDLDRAHSLLQEMLDKGIKP 569



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKP------------------------------- 29
           ILI+G+C   E+E A+ L  EM++ G++P                               
Sbjct: 296 ILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQR 355

Query: 30  ----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
               D  ++ T+  G      +  A + FDEMQR G+A D  TYT  I+GLC+   + E+
Sbjct: 356 KVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEA 415

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +L + +   + ++D   Y+ LIDG CK G++  A ++ +++ +  +  +VVTY+ +  G
Sbjct: 416 EKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDG 475

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A++L  +M    +  N  T+ +LI+G  +     + +  +  M    + PD
Sbjct: 476 LCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPD 535

Query: 206 ASIVSIVVDLLAKN 219
               + ++D L K+
Sbjct: 536 VYTYTTLIDALCKS 549



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    ++ A  L+ EM S    PDVV +  L  G   + ++E A KL DEM   
Sbjct: 264 ILLKALCDAGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLLDEMVAG 320

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   YT  +  LC  G+I +++ +   +   K  LD   Y+ ++ G C  G L  A
Sbjct: 321 GVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSA 380

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  + R  L  D VTY+ MI+GL    ++++A  L  +M    +  + +T+  LI G
Sbjct: 381 RRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDG 440

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +  + ++  ++ + M ++ V P+    + + D L K 
Sbjct: 441 YCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQ 479



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  +++ A  L  EM +KG++ +   +N+L  GL +   +E+A +   +M    
Sbjct: 472 LTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTAC 531

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID LCK+G +  +  L + +     +  I  Y+ L++G C SGR+E   
Sbjct: 532 LKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 591

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  +  TY+ ++     +  M    +++  M    V PN  T+  LI G 
Sbjct: 592 KLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGH 651

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + +    +M +K     A+  S ++ LL K +
Sbjct: 652 CKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKK 690



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 7/207 (3%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           ++ A+ L+ E+  K    +V  +N L   L +  +V+ A +LFDEM     A D  TY I
Sbjct: 244 LDEAIELFQELPHK----NVCSYNILLKALCDAGRVKDARQLFDEM---ASAPDVVTYGI 296

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I G C  G +  +V+L   +     E +   Y+ ++  LC  G +  AL +   + +  
Sbjct: 297 LIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRK 356

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           ++ D   Y+ ++ G  N G +  A   F +M+   +A + +T+ T+I+G  R  E  +  
Sbjct: 357 VILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAE 416

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LL +M  + +  D    ++++D   K
Sbjct: 417 KLLQEMWARRLDVDEVTYTVLIDGYCK 443



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 94/214 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   +E A+   ++M +  +KPDV  + TL   L +   ++RA  L  EM   G
Sbjct: 507 LINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKG 566

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + ++G C +G +    +L   +       +   Y+ L+   C    ++   
Sbjct: 567 IKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTT 626

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  +    +  +  TY+I+I G      M +A     +M +        ++  LI   
Sbjct: 627 EIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLL 686

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
            +  +  +  EL H M+++ +  ++ +    +DL
Sbjct: 687 NKKKKFVEARELFHDMRKEGLTAESDVYDFYIDL 720



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +EG   L   ML K I P+   +N+L       + ++   +++  M+  
Sbjct: 576 VLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSR 635

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY I I G CK   + E++     +      L   +YS LI  L K  +   A
Sbjct: 636 DVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEA 695

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
            ELFH + +  L A+   Y   I   +N+  ++
Sbjct: 696 RELFHDMRKEGLTAESDVYDFYIDLNFNEDNLE 728


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 3/237 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYC+   I  A+NL +EML +G   DVV +NT+  GL +   +  A KLF+EM   
Sbjct: 405 ILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+ T TI IDG CK G +  ++ELF+ ++  + +LD+  Y+ L+DG  K G ++ A
Sbjct: 465 GLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTA 524

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E++  +    ++   +++SI+++ L + G + +A  ++ +M   ++ P V+   ++I G
Sbjct: 525 KEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKG 584

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           + R    S     L KM  +  +PD    + ++    K E   N   +F + ++ EE
Sbjct: 585 YCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEE---NMSKAFGLVKKMEE 638



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 115/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y     +E A  L   M SKG  P V  +NT+  GL +  + ERA ++F EM R G
Sbjct: 266 LISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D+ TY   +   CK G  VE+  +F  +R      D+  +S ++    +SG L+ AL
Sbjct: 326 LSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+S+    L+ D V Y+I+I G    G + +A +L  +M +   A +V+T+ T++HG 
Sbjct: 386 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGL 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     +  +L ++M E+ + PD+  ++I++D
Sbjct: 446 CKRKMLGEADKLFNEMTERGLFPDSYTLTILID 478



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 113/216 (52%), Gaps = 2/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK   ++ A+ L+ +M  K IK DVV +NTL  G  ++  ++ A +++ +M   
Sbjct: 475 ILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK 534

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     +++I ++ LC  G++ E+  ++  +     +  +   + +I G C+SG     
Sbjct: 535 EILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDG 594

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE--NAVAPNVITFGTLI 178
                 +     V D ++Y+ +I+G   +  M KA  L   MEE    + P+V T+ +++
Sbjct: 595 EIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSIL 654

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           HGF R N+  +   +L KM E+ V PD S  + +++
Sbjct: 655 HGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLIN 690



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  +     N++S+M S+ + PD+V  +++         +++A   F+ ++  G+  D 
Sbjct: 341 CKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 400

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YTI I G C+ G I E++ L   +    C +D+  Y+ ++ GLCK   L  A +LF+ 
Sbjct: 401 VIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 460

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  D  T +I+I G    G +  A +LF  M+E  +  +V+T+ TL+ GF ++ +
Sbjct: 461 MTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGD 520

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
                E+   M  K ++P     SI+V+ L 
Sbjct: 521 IDTAKEIWADMVSKEILPTPISFSILVNALC 551



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 109/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + + +++  A   ++ + SKG    +   N L   L  I  VE A++++ E+ R 
Sbjct: 160 LLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRS 219

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T  I ++ LCK+G + +       ++      DI  Y+ LI      G +E A
Sbjct: 220 GVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEA 279

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL H++P       V TY+ +I+GL   G+ ++A ++F +M  + ++P+  T+ +L+  
Sbjct: 280 FELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 339

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  +   +   M+ ++V+PD    S ++ L  ++
Sbjct: 340 ACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRS 378



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + ++  ++ AL  ++ +   G+ PD VI+  L  G      +  A  L +EM + G A D
Sbjct: 375 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMD 434

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TY   + GLCK   + E+ +LF  +       D    + LIDG CK G L+ A+ELF 
Sbjct: 435 VVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFK 494

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    +  DVVTY+ ++ G    G +D A +++ DM    + P  I+F  L++      
Sbjct: 495 KMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKG 554

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVV 213
             S+   +  +M  K++ P   I + ++
Sbjct: 555 HLSEAFRVWDEMISKSIKPTVMICNSMI 582



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 96/212 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI    +   +E A  +Y E+   G+  +V   N +   L +  ++E+      E+Q  G
Sbjct: 196 LIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I      G + E+ EL   +        +  Y+ +I+GLCK G+ E A 
Sbjct: 256 VYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAK 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R  L  D  TY  ++      G   +  ++F DM    V P+++ F +++  F
Sbjct: 316 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLF 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     K +   + +KE  ++PD  I +I++
Sbjct: 376 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 407



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 36/66 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C+  +++ A  +  +M+ +G+ PD   + +L  G      +  AF+  DEM + G
Sbjct: 653 ILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRG 712

Query: 62  VAADTR 67
            + D +
Sbjct: 713 FSPDDK 718


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 108/197 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK K  + A+NL+ EM  + I P+VV +N+L  GL +  ++  A KL DEM   
Sbjct: 294 ILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDR 353

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+  +D LCKN    +++ L   L+    + ++  Y+ LI+GLCK GR E A
Sbjct: 354 GQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDA 413

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L       +V TY++MIH   N+G   +A  +   MEEN   PN +T+  +I  
Sbjct: 414 QNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRS 473

Query: 181 FIRINEPSKVIELLHKM 197
               +E  K  +LL +M
Sbjct: 474 LFDKDENDKAEKLLLEM 490



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 104/185 (56%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           ++ +CK  +++ A N+++ M+ KG KP+VV +++L  G   + +V +A  +F+ M + GV
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D ++Y I I+G CK      ++ LF  +   K   ++  Y+ LIDGLCKSG++  AL+
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALK 345

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L   +       D++TYS ++  L  +   DKA  L   +++  + PN+ T+  LI+G  
Sbjct: 346 LVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLC 405

Query: 183 RINEP 187
           +   P
Sbjct: 406 KGGRP 410



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC  KE+  A ++++ M   G+ PD+  +N L  G  +I   + A  LF+EM    
Sbjct: 260 LMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRK 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDGLCK+G I  +++L   +       DI  YS L+D LCK+   + A+
Sbjct: 320 IIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAI 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    L  ++ TY+I+I+GL   G+ + A ++F D+       NV T+  +IH F
Sbjct: 380 ALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVF 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNE 220
                  + + +L KM+E   +P+A    I++  L  K+E
Sbjct: 440 CNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDE 479


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  +I  A +++  +   G++P VV +NTL  G   +  +   FKL   M   
Sbjct: 141 ILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G +++AHDL  +M    + P+ IT+ TLI G
Sbjct: 261 MEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   + +A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+     G + K   L  +M+ +  AP+V+T
Sbjct: 367 KMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  ++     L S M + G++PDV  ++ L  GL +  +++ A +LF+EM   G
Sbjct: 177 LMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L  A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAH 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 297 DLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        +++ +M    + PD    +++++   K 
Sbjct: 357 CQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKK 394



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +  K  +LL +M+     P
Sbjct: 391 FCKKGDVWKGSKLLKEMQRDGHAP 414



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 78/155 (50%)

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           +  ++E+   G  A    + I +   CK G I  +  +F  +        + +Y+ L++G
Sbjct: 121 WAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNG 180

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             + G L    +L  ++    +  DV TYS++I+GL  + +MD A++LF +M    + PN
Sbjct: 181 YIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPN 240

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPD 275



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 75/155 (48%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ ++VE +R  R  K  +       +++ L K     +    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 124 YEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + ++  +L   M    V PD    S++++ L K
Sbjct: 184 LGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCK 218


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  +++ ++ A+N Y +ML+ G+KPD+V++NTL  GL ++  V +A KL DEM+  G
Sbjct: 334 LIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVG 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  ++E+ + +      LD  A++ LI G C+ GR+  A 
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  D  TY+++I G    G +     L  +M+ N   P VIT+  L++G 
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGL 513

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +      LL  M    V PD    +I+++   KN
Sbjct: 514 CKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKN 551



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 112/205 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +CK   I  A  +++E+  +G++P  V  NTL  GL +   ++  F+L   M+ +
Sbjct: 228 ILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEEN 287

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY++ I GLCK G +  + +LF  ++      +   ++ LIDG  +S R++ A
Sbjct: 288 RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSA 347

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  +H +    +  D+V Y+ +++GL   G ++KA  L  +M+   + P+ IT+ TLI G
Sbjct: 348 MNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDG 407

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + +  +    +E+   M E+ V+ D
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLD 432



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 108/201 (53%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            YSE+L  G  P V  +N L     +   +  A  +F+E+++ G+   T ++   I+GLC
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K+  + E   L +T+   +   D+  YS LI GLCK GRL++A +LF  + +  L  + +
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T++ +I G Y   +MD A + +  M    V P+++ + TL++G  ++ + +K  +L+ +M
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
           K   + PD    + ++D   K
Sbjct: 390 KMVGMKPDKITYTTLIDGYCK 410



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK++ ++    L   M    I PDV  ++ L  GL +  +++ A +LFDEMQ+ G
Sbjct: 264 LINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG  ++  +  ++  +  +  +  + D+  Y+ L++GLCK G +  A 
Sbjct: 324 LRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKAR 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D +TY+ +I G   +G ++ A ++   M E  V  + + F  LI GF
Sbjct: 384 KLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGF 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R          L +M E  + PD +  ++V+D   K
Sbjct: 444 CRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCK 480



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   ++ A  L+ EM  +G++P+ +    L  G +   +++ A   + +M   
Sbjct: 298 VLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTM 357

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y   ++GLCK G + ++ +L   ++++  + D   Y+ LIDG CK G LE A
Sbjct: 358 GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESA 417

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +V D V ++ +I G   DG++  A     +M E  + P+  T+  +I G
Sbjct: 418 MEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDG 477

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +        +LL +M+     P     +++++ L K
Sbjct: 478 YCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCK 515



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GYCK   ++    L  EM   G KP V+ +N L  GL +  Q++ A  L + M   
Sbjct: 473 MVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNL 532

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           GV  D  TY I ++G CKNG
Sbjct: 533 GVTPDDITYNILLEGHCKNG 552



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 39/191 (20%)

Query: 63  AADTRTYTIFIDGL----CKNGYIVESVELFRTLRILKCEL------------------- 99
            A TR      D L      +G++ ++++ FR +R    ++                   
Sbjct: 146 TAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPV 205

Query: 100 ----------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
                            +Q Y+ LI+  CK G +  A  +F+ + +  L    V+++ +I
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +GL     +D+   L   MEEN + P+V T+  LIHG  +        +L  +M+++ + 
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 204 PDASIVSIVVD 214
           P+    + ++D
Sbjct: 326 PNGITFTALID 336


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK   +  A  +   M ++ I PD V++ TL  G  +   V   +KLFDEM+R  
Sbjct: 328 IISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKK 387

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I GLC+ G +VE+ +LF  +     + D   Y+ LIDG CK+G ++ A 
Sbjct: 388 IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAF 447

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    L  +VVTY+ ++ GL   G++D A++L  +M E  + PNV T+  LI+G 
Sbjct: 448 SLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGL 507

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++    + ++L+ +M      PD    + ++D   K
Sbjct: 508 CKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCK 544



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 134/245 (54%), Gaps = 6/245 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  C+  +++ A +L  +M  +G  PDVV ++ +  G  ++ Q+ +  KL +E+QR 
Sbjct: 257 IILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRK 316

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I  LCK G +VE+ ++ R ++  +   D   Y+ LI G  KSG + + 
Sbjct: 317 GLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVE 376

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  + R  +V D VTY+ MIHGL   G++ +A  LF +M    + P+ +T+  LI G
Sbjct: 377 YKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEISL-NSLPSFTVHERQEEV 238
           + +  E  +   L ++M EK + P+    + +VD L K  E+ + N L    +HE  E+ 
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANEL----LHEMSEKG 492

Query: 239 DESNV 243
            + NV
Sbjct: 493 LQPNV 497



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 113/206 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+  ++  A  L+SEMLSKG+KPD V +  L  G  +  +++ AF L ++M   G
Sbjct: 398 MIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKG 457

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  +DGLCK G +  + EL   +     + ++  Y+ LI+GLCK G +E A+
Sbjct: 458 LTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAV 517

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       D +TY+ ++      G+M KAH+L   M +  + P ++TF  L++GF
Sbjct: 518 KLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGF 577

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                      L+  M +K +MP+A+
Sbjct: 578 CMSGMLEDGERLIKWMLDKGIMPNAT 603



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 115/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K+  +     L+ EM  K I PD V + ++  GL +  +V  A KLF EM   G
Sbjct: 363 LISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKG 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G + E+  L   +       ++  Y+ L+DGLCK G ++IA 
Sbjct: 423 LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIAN 482

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  +V TY+ +I+GL   G +++A  L  +M+     P+ IT+ T++  +
Sbjct: 483 ELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAY 542

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++ E +K  ELL  M +K + P     +++++
Sbjct: 543 CKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMN 575



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  E++ A +L+++M+ KG+ P+VV +  L  GL +  +V+ A +L  EM   G
Sbjct: 433 LIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKG 492

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I+GLCK G I ++V+L   + +     D   Y+ ++D  CK G +  A 
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAH 552

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L   +VT++++++G    G ++    L   M +  + PN  TF +L+  +
Sbjct: 553 ELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQY 612

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N     IE+   M  + V+PD +  +I++
Sbjct: 613 CIRNNMRATIEIYKGMHAQGVVPDTNTYNILI 644



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 35/249 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  E++ A  L  EM  KG++P+V  +N L  GL ++  +E+A KL +EM   G
Sbjct: 468 LVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAG 527

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--- 118
              DT TYT  +D  CK G + ++ EL R +     +  I  ++ L++G C SG LE   
Sbjct: 528 FFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGE 587

Query: 119 --------------------------------IALELFHSLPRGVLVADVVTYSIMIHGL 146
                                             +E++  +    +V D  TY+I+I G 
Sbjct: 588 RLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGH 647

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                M +A  L  +M E   +    ++ +LI GF +  +  +  +L  +M+    + + 
Sbjct: 648 CKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEK 707

Query: 207 SIVSIVVDL 215
            I  I VD+
Sbjct: 708 EIYDIFVDV 716



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +E    L   ML KGI P+    N+L       + +    +++  M   
Sbjct: 572 VLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQ 631

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  DT TY I I G CK   + E+  L + +      L   +Y+ LI G  K  + E A
Sbjct: 632 GVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEA 691

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
            +LF  +     +A+   Y I +   Y +G  +   +L
Sbjct: 692 RKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLEL 729


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 117/214 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK++ + GA+ ++ EM  +G++P+VV +N L  GL    +V+ A  L D+M   
Sbjct: 233 ILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSS 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+ + I+G CKN  + E++ LF  +     + +   Y+ LID  CK GR+E A
Sbjct: 293 DLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L++ +    +  +V TY+ +I GL   G +  A  L  +M    ++ +V+T+  LI  
Sbjct: 353 FALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDS 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  E  K ++LL +M EK + P     + ++D
Sbjct: 413 LCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMD 446



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEG---ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI+GYCK   I     A  +  EM++KGI P+ V +N L  G  +   V  A ++F EMQ
Sbjct: 196 LIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQ 255

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R G+  +  TY I I+GLC +G + E+V L   +     E ++  ++ LI+G CK+  + 
Sbjct: 256 RQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVN 315

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ LF+ + +  +  + +TY+ +I     DG+M+ A  L+  M +  + P V T+  LI
Sbjct: 316 EAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLI 375

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G  R  +      L+++M  K +  D    +I++D L K
Sbjct: 376 AGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCK 415



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+CKNK +  A+NL+++M  +G+ P+ + + TL     +  ++E AF L++ M   
Sbjct: 303 VLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDR 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I GLC+ G +  +  L   +   K   D+  Y+ LID LCK G    A
Sbjct: 363 GIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +    L    VTY+ ++ G   +G +  A  +   ME      NV+T   LI G
Sbjct: 423 VKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           F           LL++M E+ ++P+ +   I+
Sbjct: 483 FCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 11/225 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K  E      +Y EM+ + I+ +V+  N +  GL ++ ++ RA  + ++M+  G
Sbjct: 126 LLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWG 185

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-------CELDIQAYSCLIDGLCKS 114
           V+ +  TY   IDG CK G I +   +++   ILK       C  ++  Y+ LIDG CK 
Sbjct: 186 VSPNVITYNTLIDGYCKMGRIGK---MYKADAILKEMVAKGICPNEV-TYNILIDGFCKD 241

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
             +  A+ +F  + R  L  +VVTY+I+I+GL +DG++D+A  L   M  + + PNV+T 
Sbjct: 242 ENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTH 301

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             LI+GF +    ++ I L + M+++ V P+A   + ++D   K+
Sbjct: 302 NVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKD 346



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 114/239 (47%), Gaps = 5/239 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  + +N +I      +      G K  ++  N L  GL +  +      ++ EM + 
Sbjct: 90  MLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKR 149

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  ++ I ++GLCK G +  + ++   +++     ++  Y+ LIDG CK GR+   
Sbjct: 150 KIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKM 209

Query: 121 LE----LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            +    L   + +G+   + VTY+I+I G   D  +  A  +F +M+   + PNV+T+  
Sbjct: 210 YKADAILKEMVAKGI-CPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNI 268

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           LI+G     +  + + L  +M   ++ P+    +++++   KN+    ++  F   E+Q
Sbjct: 269 LINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQ 327



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+  +++ A +L +EM+SK +  DVV +N L   L +  +  +A KL DEM   G
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKG 433

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   +DG C+ G +  ++ +   +     + ++  ++ LI G C  GRLE A 
Sbjct: 434 LNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDAN 493

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            L + +    LV +  TY I+   +   G
Sbjct: 494 GLLNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 94/185 (50%), Gaps = 9/185 (4%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK--- 113
           M  D    ++    + +    +N  I+   E F+       +L + + + L+ GL K   
Sbjct: 76  MSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESE 135

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           +G +E    ++  + +  +  +V++++I+++GL   G++++A D+  DM+   V+PNVIT
Sbjct: 136 NGDMEF---VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVIT 192

Query: 174 FGTLIHGFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           + TLI G+    RI +  K   +L +M  K + P+    +I++D   K+E    ++  F 
Sbjct: 193 YNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFG 252

Query: 231 VHERQ 235
             +RQ
Sbjct: 253 EMQRQ 257



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 91/191 (47%), Gaps = 3/191 (1%)

Query: 32  VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           ++ + L +      ++ R F+ F      G      +    + GL K     +   ++R 
Sbjct: 86  ILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYRE 145

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG---LYN 148
           +   K EL++ +++ +++GLCK G+L  A ++   +    +  +V+TY+ +I G   +  
Sbjct: 146 MIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGR 205

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G+M KA  +  +M    + PN +T+  LI GF +    S  + +  +M+ + + P+   
Sbjct: 206 IGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVT 265

Query: 209 VSIVVDLLAKN 219
            +I+++ L  +
Sbjct: 266 YNILINGLCSD 276



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+   +  AL + + M  KG + +VV HN L  G     ++E A  L +EM   G
Sbjct: 444 LMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERG 503

Query: 62  VAADTRTYTIFIDGLCKNGYI 82
           +  +  TY I  + + + G++
Sbjct: 504 LVPNRTTYEIIKEEMMEKGFV 524


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 2/227 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+N E   A++L  EM    + PDVV +NT+  G  E  ++E+A +L +EMQ  
Sbjct: 147 ILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I ID  CK G + E++ L + ++    E D+  Y+ LI G C  G L+  
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRG 266

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             LF   L RG      +TY+ +I G    G++ +A ++F  M E  V PNV T+  LI 
Sbjct: 267 KALFDEVLERGDSPC-AITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLID 325

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           G   + +  + ++LL+ M +K+  P+    +I+++ L K+ +  ++L
Sbjct: 326 GLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADAL 372



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 106/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +  AL++Y  ++ K    D+V  N L     +   V +A +L+ ++    
Sbjct: 430 LIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSK 489

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ TYT  IDG CK G +  +  L   +R+ +    +  Y+CL+  LCK G L+ A 
Sbjct: 490 IVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAW 549

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R     DV++++IMI G    G +  A  L + M    ++P++ T+  LI+ F
Sbjct: 550 RLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRF 609

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +++    + I    KM +    PDA I   V+
Sbjct: 610 LKLGYLDEAISFFDKMIDSGFEPDAHICDSVL 641



 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 114/211 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK  +++ A+ L  EM  KG++ D++++ +L  G  +  +++R   LFDE+   
Sbjct: 217 ILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLER 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    TY   I G CK G + E+ E+F  +       ++  Y+ LIDGLC  G+ + A
Sbjct: 277 GDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L + + +     +VVTY+I+I+ L  D  +  A ++   M++    P+ IT+ +L+ G
Sbjct: 337 LQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGG 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
                +  +  +LL+ M + +   D  ++S 
Sbjct: 397 LCAKGDLDEASKLLYLMLKDSSYTDPDVISF 427



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C   E++    L+ E+L +G  P  + +NTL  G  ++ +++ A ++F+ M   G
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  IDGLC  G   E+++L   +     E ++  Y+ +I+ LCK   +  AL
Sbjct: 313 VRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADAL 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLIH 179
           E+   + +     D +TY+ ++ GL   G +D+A  L   M  + +   P+VI+F  LIH
Sbjct: 373 EIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIH 432

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  + N   + +++   + EK    D    +I+++
Sbjct: 433 GLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLN 467



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 100/196 (51%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           ML +G   +V  +N L  GL    +  +A  L  EM+++ +  D  +Y   I G C+   
Sbjct: 133 MLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKE 192

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + ++++L   ++   C   +  +  LID  CK+G+++ A+ L   +    L AD++ Y+ 
Sbjct: 193 LEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTS 252

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I G  + G++D+   LF ++ E   +P  IT+ TLI GF ++    +  E+   M E+ 
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERG 312

Query: 202 VMPDASIVSIVVDLLA 217
           V P+    + ++D L 
Sbjct: 313 VRPNVYTYTGLIDGLC 328



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           L+ G C   +++ A  L   ML  S    PDV+  N L  GL + +++ +A  ++D +  
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVE 452

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
              A D  T  I ++   K+G + +++EL++ +   K   +   Y+ +IDG CK+G L +
Sbjct: 453 KLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNV 512

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L   +    L   V  Y+ ++  L   G +D+A  LF +M+ +   P+VI+F  +I 
Sbjct: 513 AKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMID 572

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G ++  +      LL  M    + PD    S +++   K
Sbjct: 573 GSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLK 611



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L RG    +V  Y+I++ GL  + +  KA  L  +M +N++ P+V+++ T+I GF    E
Sbjct: 134 LKRG-FAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKE 192

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             K ++L ++M+            I++D   K
Sbjct: 193 LEKALQLANEMQGSGCSWSLVTWGILIDAFCK 224


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 118/213 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+   ++ AL L+ EM+S G+ P+++ +N +  GLF   +   A +L+  + + G
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR++ A 
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV DV TYS+M   L   G +++  DLFL MEEN  + +     +++   
Sbjct: 677 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++  + ++    L  + EK+   +AS  S +++
Sbjct: 737 LQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   +++ A  L + M+S G+KPD+V + TL  G   + +++ A  LF EM   G
Sbjct: 522 LIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 581

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL        + EL+ ++     +L++  Y+ ++ GLCK+   + AL
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+MD+A DLF     N + P+V T+  +    
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     D+ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 702 IEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 761

Query: 241 SNV 243
           S  
Sbjct: 762 STA 764



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ K  + + A + Y EML +GI PDVV ++++   L +   +++A ++ + M ++G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   + G C +G   E++   + +R    E ++  YS L++ LCK+GR   A 
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  D+ TY  ++ G    G + + H L   M  N + P+   F  LI  +
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM++  + P+      V+D+L K+
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 123/228 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+  ++ A+  + +M+ +G+ P+++++ +L  GL    + ++A +L  EM   G
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  +   ID  CK G ++ES +LF  +  +  + DI  Y+ LIDG C +G+++ A 
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  S+    +  D+VTY  +I+G     +MD A  LF +M  + V+PN+IT+  ++ G 
Sbjct: 537 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
                 +   EL   + +     + S  +I++  L KN ++  +L  F
Sbjct: 597 FHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 644



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   + + A  L  EML +GI  + +  N++     +  +V  + KLFD M R G
Sbjct: 452 LIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   IDG C  G + E+ +L  ++  +  + DI  Y  LI+G C+  R++ AL
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +++TY+I++ GL++  +   A +L++ + ++     + T+  ++HG 
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 668



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 3/222 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L+ G C     + AL L   M      G  PDVV +NT+  G F+    ++A+  + EM 
Sbjct: 169 LLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEML 228

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+  D  TY+  I  LCK   + +++E+  T+       D   Y+ ++ G C SG+ +
Sbjct: 229 DRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 288

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+     +    +  +VVTYS +++ L  +G+  +A  +F  M +  + P++ T+ TL+
Sbjct: 289 EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G+       ++  LL  M    + PD  + +I++   AK E
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE 390



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 7/245 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C+   ++        ++ KG + D +    L  GL    +   A  +    M  
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   D  +Y   + GLC      E++EL   +   R      D+ +Y+ +++G  K G 
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 117 LEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            + A   +H  L RG+L  DVVTYS +I  L     MDKA ++   M +N V P+ +T+ 
Sbjct: 217 SDKAYSTYHEMLDRGIL-PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF-TVHER 234
           +++HG+    +P + I  L KM+   V P+    S +++ L KN  S  +   F ++ +R
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 235 QEEVD 239
             E D
Sbjct: 336 GLEPD 340



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  CKN     A  ++  M  +G++PD+  + TL  G      +     L D M R+G
Sbjct: 312 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNG 371

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   + I I    K   + +++ +F  +R      ++  Y  +ID LCKSG ++ A+
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L  +++ Y+ +IHGL    + DKA +L L+M +  +  N I F ++I   
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSH 491

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  K+ +L+ ++    V PD    + ++D
Sbjct: 492 CKEGRVIESEKLFDLMVRI---GVKPDIITYNTLID 524



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 106/213 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC + + + A+    +M S G++P+VV +++L   L +  +   A K+FD M + G
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G    G +VE   L   +     + D   ++ LI    K  +++ A+
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAM 396

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L  +VV Y  +I  L   G +D A   F  M +  + PN+I + +LIHG 
Sbjct: 397 LVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGL 456

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              ++  K  EL+ +M ++ +  +    + ++D
Sbjct: 457 CTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 3/155 (1%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL--KCELDIQAYS 105
           E A  +FDE+ R G  A        +  + ++          R  R    K    +  Y+
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     D +T++ ++ GL  D +   A D+ L  M E
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
               P+V ++  L+ G    N   + +ELLH M +
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD 191



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 58/120 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKN   + AL ++  +    ++ +    N +   L +  +++ A  LF     +
Sbjct: 626 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 685

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D RTY++  + L + G + E  +LF ++    C  D +  + ++  L + G +  A
Sbjct: 686 GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + K    E    +Y EM+ +G  PD+++ N     +F+  ++E+   LF+E++  G
Sbjct: 522 LIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQG 581

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D R+Y+I I GL K G+  ++ +LF  ++     LD +AY+ +IDG CKSG++  A 
Sbjct: 582 LTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAY 641

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L   VVTY  +I GL    ++D+A+ LF + +  AV  NV+ + +LI GF
Sbjct: 642 QLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGF 701

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   +L ++ +K + P+    + ++D L K E
Sbjct: 702 GKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAE 740



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+CK+ ++  A  L  EM +KG++P VV + ++  GL +I +++ A+ LF+E +  
Sbjct: 626 IVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 685

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +   Y+  IDG  K G I E+  +   L       +   ++CL+D L K+  ++ A
Sbjct: 686 AVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEA 745

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  F ++       + VTYSIM++GL    + +KA   + +M++  + PN IT+ T+I G
Sbjct: 746 LVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISG 805

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             R+    +  +L  + K    +PD++  + +++ L+    ++++
Sbjct: 806 LARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDA 850



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 1   ILINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           +L+N Y  C  K  EIE    L+ E+ ++G+ PDV  ++ L  GL +    +  +KLF E
Sbjct: 552 MLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYE 611

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G+  DTR Y I IDG CK+G + ++ +L   ++    +  +  Y  +IDGL K  R
Sbjct: 612 MKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDR 671

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L+ A  LF       +  +VV YS +I G    G++D+A+ +  ++ +  + PN  T+  
Sbjct: 672 LDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNC 731

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L+   ++  E  + +     MK     P+    SI+V+ L K
Sbjct: 732 LLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCK 773



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  ++ ++  A  LY +ML  G  P+ V++ +L    F+  + E   K++ EM   G
Sbjct: 487 LIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRG 546

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D      ++D + K G I +   LF  ++      D+++YS LI GL K G  +   
Sbjct: 547 CSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTY 606

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    L  D   Y+I+I G    G+++KA+ L  +M+   + P V+T+G++I G 
Sbjct: 607 KLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGL 666

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K V  +  + S ++D   K
Sbjct: 667 AKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGK 703



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + +   ++ AL+L  EM S     D+V++N       ++ +V+ A+K F E++  G
Sbjct: 243 LICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  I  LCK   + E+VELF  L   K    + AY+ +I G    G+   A 
Sbjct: 303 LVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAY 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L     R   +  V+ Y+ ++  L   G++++A  +   M+ +A APN+ ++  LI   
Sbjct: 363 SLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILIDML 421

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E    +++   MKE  + P+   V+I++D L K +
Sbjct: 422 CKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQ 460



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK + ++ A +++  +  K   PD V   +L  GL    +V  A+ L+++M   
Sbjct: 451 IMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDS 510

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   YT  I    K G   +  ++++ +    C  D+   +  +D + K+G +E  
Sbjct: 511 GQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKG 570

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    L  DV +YSI+IHGL   G     + LF +M+E  +  +   +  +I G
Sbjct: 571 RALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDG 630

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  + +K  +LL +MK K + P       V+D LAK
Sbjct: 631 FCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAK 668



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 99/217 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++  + K++++  A  +   M     +P    + TL   L   H+ +    L  +MQ  G
Sbjct: 173 MVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIG 232

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  +T  I    + G +  ++ L   ++      D+  Y+  ID   K G++++A 
Sbjct: 233 YEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAW 292

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH L    LV D VT++ MI  L    ++D+A +LF +++ N   P V  + T+I G+
Sbjct: 293 KFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGY 352

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + ++   LL + K K  +P     + ++  L +
Sbjct: 353 GSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGR 389



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 106/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK  E+E AL +   M   G+ P+++  N +   L +  +++ A  +F  +   
Sbjct: 416 ILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHK 475

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D+ T+   IDGL ++G + ++  L+  +       +   Y+ LI    K GR E  
Sbjct: 476 VCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDG 535

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +++  +       D++  +  +  ++  G+++K   LF +++   + P+V ++  LIHG
Sbjct: 536 HKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHG 595

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++        +L ++MKE+ +  D    +IV+D   K+
Sbjct: 596 LVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKS 634



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 113/248 (45%), Gaps = 36/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           + I+ + K  +++ A   + E+ S+G+ PD V   ++   L +  +V+ A +LF+E+   
Sbjct: 277 VCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSN 336

Query: 58  --------------------------------QRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                           +R G       Y   +  L + G + E+
Sbjct: 337 KSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEA 396

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + +   ++ +    ++ +Y+ LID LCK+G LE AL++  S+    L  +++T +IMI  
Sbjct: 397 LRILEAMK-MDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDR 455

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++D+A  +FL ++     P+ +TF +LI G  R  + +    L  KM +    P+
Sbjct: 456 LCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPN 515

Query: 206 ASIVSIVV 213
           A + + ++
Sbjct: 516 AVVYTSLI 523



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 3/230 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  ++E AL +  E +     P++  +N L   L +  ++E A K+ D M+  G+  +  
Sbjct: 389 RKGKVEEALRIL-EAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNII 447

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I ID LCK   + E+  +F  L    C  D   +  LIDGL + G++  A  L+  +
Sbjct: 448 TVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKM 507

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  + V Y+ +I   +  G+ +  H ++ +M     +P+++     +    +  E 
Sbjct: 508 LDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEI 567

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            K   L  ++K + + PD    SI++  L K   S ++   F  +E +E+
Sbjct: 568 EKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLF--YEMKEQ 615



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI       E +  L L  +M   G +  V +  TL        +V+ A  L DEM+ + 
Sbjct: 208 LIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNS 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD   Y + ID   K G +  + + F  L+      D   ++ +I  LCK+ R++ A+
Sbjct: 268 FNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAV 327

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  L     V  V  Y+ MI G  + G+ ++A+ L    +     P+VI +  ++   
Sbjct: 328 ELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCL 387

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  + + +L  MK  +  P+ +  +I++D+L K
Sbjct: 388 GRKGKVEEALRILEAMK-MDAAPNLTSYNILIDMLCK 423



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK ++   A   + EM  +G+KP+ + + T+  GL  +  V  A  LF+  +  
Sbjct: 766 IMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSS 825

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+  Y   I+GL      +++  LF   R+  C +  +    L+D L K+  LE A
Sbjct: 826 GGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQA 885



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 79/187 (42%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N L + +     +E   ++ +EM   G      T    +    K+  + E+  +  T+R
Sbjct: 135 YNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMR 194

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
             K      AY+ LI  L  +   +  L L   +        V  ++ +I     +G++D
Sbjct: 195 KFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVD 254

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            A  L  +M+ N+   +++ +   I  F ++ +     +  H++K + ++PD    + ++
Sbjct: 255 AALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMI 314

Query: 214 DLLAKNE 220
            +L K E
Sbjct: 315 GVLCKAE 321


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK  +++ A      M + GIKP+VV +NT+  G     +VE A  +FD M+  
Sbjct: 196 IMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCR 255

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+ TY  FI G+CK G + E+  +   ++ +        Y+ LIDG C  G LE+A
Sbjct: 256 GVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMA 315

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    + R  L+  V TY+++IH L+ D +MD+A  +  +M E  + P+ +T+  LI+G
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILING 375

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R     K   L  +M  K + P     + ++ +L+K
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSK 413



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 111/213 (52%), Gaps = 1/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+   ++ A  L+ EM+SKGI+P  V + +L   L +  ++++A  LF+++ R 
Sbjct: 371 ILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRK 430

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   +   IDG C NG +  +  + + +  +K   D   ++ L+ G C+ G++E A
Sbjct: 431 GIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAA 490

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    +  D ++Y+ +I G    G M  A  +  +M      P ++T+  LI G
Sbjct: 491 RELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQG 550

Query: 181 FIRINEPSKVIELLHKMKEKNVMP-DASIVSIV 212
             +  E     +LL +M  K + P D + +S++
Sbjct: 551 LCKNEEGDHAEQLLKEMISKGITPNDNTYLSLI 583



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 3/214 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  E +G +    EM  KG+ PD V +N L  G      V++AF L DEM   G+    
Sbjct: 345 CKMDEADGIIK---EMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTR 401

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I  L K G + ++ +LF  +       D+  ++ LIDG C +G ++ A  +   
Sbjct: 402 VTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKE 461

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  +V D VT++ ++ G   +G+++ A +L  +M+   + P+ I++ TLI G+ +  +
Sbjct: 462 MDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGD 521

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                 +  +M      P     + ++  L KNE
Sbjct: 522 MKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNE 555



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C+ K  + A   +  M  KG+ P V   N +     + ++ E+A+ L+ EM R 
Sbjct: 126 LLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRM 185

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            + +   T+ I I+ LCK G + ++ E    +  L  + ++  Y+ +I G C  GR+E A
Sbjct: 186 RIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGA 245

Query: 121 LELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             +F  +  RGV   D  TY   I G+  +G++++A  +   M+E  + P  +T+ TLI 
Sbjct: 246 RMIFDLMKCRGV-KPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLID 304

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           G+          +   KM  + +MP  S  ++++  L
Sbjct: 305 GYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHAL 341



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 9/231 (3%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + K+   E A  LY+EM    IK  VV  N +   L +  ++++A +    M+  G+  +
Sbjct: 166 FLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPN 225

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TY   I G C  G +  +  +F  ++    + D   Y   I G+CK G+LE A  +  
Sbjct: 226 VVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLE 285

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI--- 182
            +    L    VTY+ +I G  N G ++ A D    M    + P V T+  LIH      
Sbjct: 286 KMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
           +++E   +I+   +M EK ++PD+   +I+++   +     N   +FT+H+
Sbjct: 346 KMDEADGIIK---EMSEKGLVPDSVTYNILINGYCR---CGNVKKAFTLHD 390



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 1/189 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           GIK   V+++ L     E+ + + AF+ FD M+  GV          +    K+    ++
Sbjct: 117 GIK-TYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKA 175

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             L+  +  ++ +  +  ++ +I+ LCK G+L+ A E    +    +  +VVTY+ +IHG
Sbjct: 176 WVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHG 235

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + G+++ A  +F  M+   V P+  T+G+ I G  +  +  +   +L KMKE  + P 
Sbjct: 236 YCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPT 295

Query: 206 ASIVSIVVD 214
           A   + ++D
Sbjct: 296 AVTYNTLID 304



 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C N  ++ A  +  EM    + PD V  NTL  G     +VE A +L +EM+  G
Sbjct: 442 LIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRG 501

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G  K G + ++  +   +  +     +  Y+ LI GLCK+   + A 
Sbjct: 502 IKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAE 561

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +L   +    +  +  TY  +I G+ N
Sbjct: 562 QLLKEMISKGITPNDNTYLSLIEGIGN 588


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 118/213 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+   ++ AL L+ EM+S G+ P+++ +N +  GLF   +   A +L+  + + G
Sbjct: 390 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 449

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR++ A 
Sbjct: 450 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 509

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV DV TYS+M   L   G +++  DLFL MEEN  + +     +++   
Sbjct: 510 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 569

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++  + ++    L  + EK+   +AS  S +++
Sbjct: 570 LQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 602



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 123/228 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC + + + A+    +M S G++P+VV +++L   L +  +   A K+FD M + G
Sbjct: 250 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G CK G ++ES +LF  +  +  + DI  Y+ LIDG C +G+++ A 
Sbjct: 310 LEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  S+    +  D+VTY  +I+G     +MD A  LF +M  + V+PN+IT+  ++ G 
Sbjct: 370 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 429

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
                 +   EL   + +     + S  +I++  L KN ++  +L  F
Sbjct: 430 FHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 477



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 111/207 (53%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           + ++ A+ + + M+  G+ PD + +N++  G     Q + A     +M+ DGV  +  TY
Sbjct: 223 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTY 282

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           +  ++ LCKNG   E+ ++F ++     E DI  Y  L+ G CK GR+  + +LF  + R
Sbjct: 283 SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVR 342

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             +  D++TY+ +I G    G+MD+A  L   M    V P+++T+GTLI+G+ R++    
Sbjct: 343 IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 402

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLL 216
            + L  +M    V P+    +I++  L
Sbjct: 403 ALALFKEMVSSGVSPNIITYNIILQGL 429



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   +++ A  L + M+S G+KPD+V + TL  G   + +++ A  LF EM   G
Sbjct: 355 LIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL        + EL+ ++     +L++  Y+ ++ GLCK+   + AL
Sbjct: 415 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+MD+A DLF     N + P+V T+  +    
Sbjct: 475 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     D+ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 535 IEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 594

Query: 241 SNV 243
           S  
Sbjct: 595 STA 597



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  CKN     A  ++  M  +G++PD+  + TL  G  +  +V  + KLFD M R G
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   IDG C  G + E+ +L  ++  +  + DI  Y  LI+G C+  R++ AL
Sbjct: 345 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 404

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +++TY+I++ GL++  +   A +L++ + ++     + T+  ++HG 
Sbjct: 405 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 464

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 465 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 501



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 14  GALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
            A++ Y+ M   G   + P V  +  L        +++  F     + + G   D  T+T
Sbjct: 72  AAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFT 131

Query: 71  IFIDGLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
             + GLC +    +++++  R +  L C  D+ +Y+ L+ GLC   R + ALEL H +  
Sbjct: 132 PLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD 191

Query: 130 ---GVLVADVVTYSIMIHGLYNDG--------QMDKAHDLFLDMEENAVAPNVITFGTLI 178
              G    DVV+Y+ +++G + +G         MDKA ++   M +N V P+ +T+ +++
Sbjct: 192 DRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 251

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF-TVHERQEE 237
           HG+    +P + I  L KM+   V P+    S +++ L KN  S  +   F ++ +R  E
Sbjct: 252 HGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLE 311

Query: 238 VD 239
            D
Sbjct: 312 PD 313



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 18/228 (7%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C +K    A+++    M   G  PDV  +N L  GL + ++ + A +L   M  D
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 61  ---GVAADTRTYTIFIDGLCKNG--------YIVESVELFRTLRILKCELDIQAYSCLID 109
              G   D  +Y   ++G  K G         + +++E+  T+       D   Y+ ++ 
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 252

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C SG+ + A+     +    +  +VVTYS +++ L  +G+  +A  +F  M +  + P
Sbjct: 253 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 312

Query: 170 NVITFGTLIHGFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++ T+ TL+ G     R+ E  K+ +L+ ++    V PD    + ++D
Sbjct: 313 DIATYRTLLQGHCKEGRVIESEKLFDLMVRI---GVKPDIITYNTLID 357



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 56/115 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKN   + AL ++  +    ++ +    N +   L +  +++ A  LF     +
Sbjct: 459 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 518

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           G+  D RTY++  + L + G + E  +LF ++    C  D +  + ++  L + G
Sbjct: 519 GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 573


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   I+  L+L+ E+L KGIKP   ++N +  GLF+  +   A   F EM   G
Sbjct: 572 LVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESG 631

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY+I + GL KN    E++ LF+ L  +  ++DI   + +I G+ +  R+E A 
Sbjct: 632 IAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAK 691

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV-APNVITFGTLIHG 180
           +LF S+ R  LV  VVTYSIM+  L  +G +++A D+F  ME      PN      ++  
Sbjct: 692 DLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLNHVVRE 751

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +   E  +    L K+ E++   D S  ++++DL +
Sbjct: 752 LLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFS 788



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY    + + A+ +  +M S+GI PDVV  N+L   L +  +++ A  +FD M   G
Sbjct: 292 LIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKG 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y I ++G    G +V+  ELF  +       D   ++ LI    K G L+ A 
Sbjct: 352 QKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRAT 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +    +  DVVTYS +I  L   G+MD A + F  M +  VAP++ T+  LI GF
Sbjct: 412 IIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGF 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  K  +L+ +M  K + PD    + +++ L K
Sbjct: 472 CTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCK 508



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 115/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y K   ++ A  +++EM  +G++PDVV ++T+   L  I +++ A + F++M   
Sbjct: 396 VLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQ 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA    TY   I G C +G ++++ +L   +       DI  ++ +I+ LCK GR+  A
Sbjct: 456 GVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F       L  +V+ Y+ ++ G    G+M+ A  +F  M    + PNV+ +GTL++G
Sbjct: 516 QNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNG 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + ++    + + L  ++  K + P  ++ +I++
Sbjct: 576 YCKVGRIDEGLSLFREILHKGIKPSTTLYNIIL 608



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 105/206 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK + ++ A  +  +M+ KG+ PD   +N+L  G     Q + A ++  +M   G
Sbjct: 257 VVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQG 316

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T    +  LCK+G I ++ ++F ++ +   + DI +Y  +++G    G L    
Sbjct: 317 ILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLT 376

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ +    +  D   ++++I      G +D+A  +F +M E  V P+V+T+ T+I   
Sbjct: 377 ELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAAL 436

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
            RI +    +E  ++M ++ V P  S
Sbjct: 437 CRIGKMDDAVEKFNQMIDQGVAPSIS 462



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +  A N++   +S G+ P+V+++NTL  G   + ++E A ++FD M   G
Sbjct: 502 IINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAG 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   ++G CK G I E + LFR +     +     Y+ ++ GL ++GR   A 
Sbjct: 562 IQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAK 621

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             FH +    +  D  TYSI++ GL+ +   D+A  LF ++    V  ++ T   +I G 
Sbjct: 622 VKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGM 681

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I    +  +L   +    ++P     SI++  L K
Sbjct: 682 FQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIK 718



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++  A +L++EM+ +GI PD+  +N +   L +   +++A  +  +M   G
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I G    G   E+V + + +       D+   + L+  LCK G+++ A 
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDAR 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+       D+ +Y IM++G    G +    +LF  M  + +AP+   F  LI  +
Sbjct: 342 DVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAY 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   + ++M+E+ V PD    S V+  L +
Sbjct: 402 AKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCR 438



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 108/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C + ++  A +L  +M++KG++PD+   N +   L ++ +V  A  +FD     G
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   +DG C  G +  ++ +F  +     + ++  Y  L++G CK GR++  L
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGL 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +      Y+I++HGL+  G+   A   F +M E+ +A +  T+  ++ G 
Sbjct: 587 SLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGL 646

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            + +   + I L  ++   NV  D + ++I++
Sbjct: 647 FKNSCSDEAILLFKELHAMNVKIDITTLNIMI 678



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 3/207 (1%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQRDGVAADTRTYTIFID 74
           L  + ++L  G+  D ++ + L  GL E  +   A   L   M   G   D  +Y I + 
Sbjct: 128 LAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLK 187

Query: 75  GLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
            LC +    ++ EL R +      C  +  AY+ +IDG  K G +  A +LF+ + +  +
Sbjct: 188 SLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGI 247

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             D+ TY+ +++ L     MDKA  +   M +  V P+  T+ +LI+G+    +  + + 
Sbjct: 248 SPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVR 307

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  KM  + ++PD   ++ ++  L K+
Sbjct: 308 VSKKMTSQGILPDVVTLNSLMASLCKH 334



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C+ K    AL+ L   M   G  PDV  +  +   L    +  +A +L   M   
Sbjct: 149 LLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEG 208

Query: 61  GVAA--DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G     +   Y   IDG  K G + ++ +LF  +       D+  Y+C+++ LCK+  ++
Sbjct: 209 GAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMD 268

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +    ++ D  TY+ +I+G  + GQ  +A  +   M    + P+V+T  +L+
Sbjct: 269 KAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLM 328

Query: 179 -----HGFIR 183
                HG I+
Sbjct: 329 ASLCKHGKIK 338



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G  KN   + A+ L+ E+ +  +K D+   N +  G+F+I +VE A  LF  + R 
Sbjct: 641 IVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRS 700

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE 98
           G+     TY+I +  L K G + E+ ++F ++    CE
Sbjct: 701 GLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCE 738


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 112/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN +CK+     A  +Y  M+  G KP+  ++N L  G   + ++  A K++ EM  +G
Sbjct: 445 MINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNG 504

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   IDGLCK     E+  L + +     + DI+ Y+ LI GLC+  ++++AL
Sbjct: 505 CCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVAL 564

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +    L  DV+ ++I+IHGL + G++D+A  ++L+M+E   +PN++T+ TL+ GF
Sbjct: 565 RIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGF 624

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             I    K   L   + +  + PD
Sbjct: 625 YEIGSIDKAASLWTAILDNGLKPD 648



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+  +I  A+ +Y EM S G  P ++ +NTL  GL +  + + A  L  EM   G
Sbjct: 480 LINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERG 539

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D RTY   I GLC++  +  ++ ++  +     ++D+  ++ LI GLC +G+++ A 
Sbjct: 540 FKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAF 599

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +       ++VTY+ ++ G Y  G +DKA  L+  + +N + P+++T+ T I G 
Sbjct: 600 CIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGL 659

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              N   + + LL+++    +MP     SI+V  + K
Sbjct: 660 CSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIK 696



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 13/240 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++   C   +++ A++L+S +  +G+ PD V ++TL  GL +  Q++ A  L DEM   
Sbjct: 163 IILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNY 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV AD   Y   + G  + G   ++++++  L R      ++  Y  ++DGLCK GR + 
Sbjct: 223 GVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKE 282

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E++  +      AD VTY I+IHGL   G +D A  ++ DM +  +  +V  + +LI 
Sbjct: 283 AGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIK 342

Query: 180 GFIRINEPSKVIEL--------LHKMKEKNVMP----DASIVSIVVDLLAKNEISLNSLP 227
           GF  +    +  +         + ++   N+M     D+ +VS   +LL + E   +  P
Sbjct: 343 GFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSP 402



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C++ +++ A  +YS+M+  G+  DV ++N+L  G  E+ +   A+K +D     
Sbjct: 304 ILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFS 363

Query: 61  GV-----------------------------------AADTRTYTIFIDGLCKNGYIVES 85
           G+                                   + D  T+   I GLC+NGY   +
Sbjct: 364 GIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRA 423

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            E+    R    ELD+ +YS +I+  CK GR   A E++ ++ +     +   Y+ +I+G
Sbjct: 424 FEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALING 483

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                +++ A  ++++M  N   P +IT+ TLI G  +  +  +   L  +M E+   PD
Sbjct: 484 FCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD 543

Query: 206 ASIVSIVVDLLAKNE 220
               + ++  L +++
Sbjct: 544 IRTYASLIRGLCRDK 558



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 6/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++++ + +    + AL  + ++ S  G  P V  HNTL        +   A   F  +  
Sbjct: 88  VVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSH 147

Query: 60  DG----VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                 +A + +TY I +  LC  G +  +V LF +LR      D   YS L+ GL K  
Sbjct: 148 GAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHD 207

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITF 174
           +L+ AL+L   +P   + AD V Y+ ++ G +  G  +KA  ++  +  +   +PN+ T+
Sbjct: 208 QLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATY 267

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             ++ G  ++    +  E+  +M   N   D     I++  L ++
Sbjct: 268 KVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRS 312



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 81/151 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C++K+++ AL ++ E+L  G++ DV++HN L  GL    +V+ AF ++ EM+   
Sbjct: 550 LIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKN 609

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   +DG  + G I ++  L+  +     + DI  Y+  I GLC   R    +
Sbjct: 610 CSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGV 669

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
            L + +    ++  V+T+SI++  +   G +
Sbjct: 670 LLLNEVLATGIMPTVITWSILVRAVIKYGPI 700



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C   +++ A  +Y EM  K   P++V +NTL  G +EI  +++A  L+  +  +
Sbjct: 584 ILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDN 643

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+  D  TY   I GLC      E V L   +        +  +S L+  + K G ++I
Sbjct: 644 GLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQI 702


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++    L  EM+ KGI+PD+   N L  GL    +++ A +L+ E +++G
Sbjct: 542 LISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNG 601

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + IDG CK   + E   L   L   K EL+   Y+ LI   C +G +  A 
Sbjct: 602 YVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAF 661

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   +  RGVL++   TYS ++HGL N G +D A  L  +M +  + PNV+ + T+I G
Sbjct: 662 RLRDDMKSRGVLLS-CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGG 720

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + ++ + +KV  +L +M   N+ P+    +I++D   K
Sbjct: 721 YSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCK 758



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   I  AL +  +MLSKGI P+ V  N+L  G  +  Q+ +A  + +EM   G
Sbjct: 367 LIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG 426

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  ++++ I+ LC     V ++   R + +     +    + L+ GLCK+G+   A+
Sbjct: 427 LPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAV 486

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  L     V ++VT + +IHGL   G M +   L  DM E  +  + IT+ TLI G 
Sbjct: 487 ELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGC 546

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  +  EL  +M +K + PD
Sbjct: 547 CKEGKVKEGFELKEEMVKKGIQPD 570



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 106/202 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN  C       AL+   EML + ++P+  +  TL  GL +  +   A +L+  +   
Sbjct: 436 MVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK 495

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T    I GLCK G + E+++L R +       D   Y+ LI G CK G+++  
Sbjct: 496 GFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEG 555

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  +  D+ T+++++HGL N  ++D+A  L+ + ++N   PNV T+G +I G
Sbjct: 556 FELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDG 615

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
           + + N+  +   LL+++  K +
Sbjct: 616 YCKANKVEEGENLLNELVSKKL 637



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 118/275 (42%), Gaps = 41/275 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +   A+ L+  +L KG  P++V  N L  GL +   ++   KL  +M   G
Sbjct: 472 LVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERG 531

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G CK G + E  EL   +     + DI  ++ L+ GLC + +++ A 
Sbjct: 532 LVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEAS 591

Query: 122 ELFHSLPRGVLVADVVTYSIMIHG---------------------------LYN------ 148
            L+H   +   V +V TY +MI G                           +YN      
Sbjct: 592 RLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAY 651

Query: 149 --DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G M+ A  L  DM+   V  +  T+ +L+HG   I        LL +M+++ ++P+ 
Sbjct: 652 CINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNV 711

Query: 207 SIVSIVV------DLLAKNEISLNSLPSFTVHERQ 235
              + ++        + K  I L  + S  +H  +
Sbjct: 712 VCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNK 746



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 110/206 (53%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A +++S +  KG+ P +     L   L + ++++++++++D +   G+  D   ++  I+
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             CK     +++ LF  +  L    ++  Y+ +I GLCKSGRL+ A      + +  +  
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            ++TYS+ I+GL    ++D+A+ +  +M E    PN + + TLI G+ ++   S+ +++ 
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNE 220
             M  K + P++  ++ ++    K++
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGFCKSD 410



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 3/187 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC N  +  A  L  +M S+G+      +++L  GL  I  V+ A  L DEM+++G
Sbjct: 647 LIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEG 706

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  I G  K G + +   + + +       +   Y+ +IDG CK G+ + A 
Sbjct: 707 LLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAA 766

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    ++ D VTY+   +GL  +G++++A  +  +M   AV  + IT+ TLI G 
Sbjct: 767 KLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDG- 825

Query: 182 IRINEPS 188
              ++PS
Sbjct: 826 --CHQPS 830



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 104/214 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GYCK  ++E   NL +E++SK ++ + V++N+L         +  AF+L D+M+  
Sbjct: 611 VMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSR 670

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY+  + GLC  G + ++  L   +R      ++  Y+ +I G  K G++   
Sbjct: 671 GVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKV 730

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  +  TY+IMI G    G+  +A  L  +M E  + P+ +T+    +G
Sbjct: 731 NIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNG 790

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +  ++  +M    V  D    + ++D
Sbjct: 791 LCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLID 824



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 106/216 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K  E++ +  +Y  +   GI PDV + +T+     + H+ + A  LF +M++ G
Sbjct: 227 LLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  TY   I GLCK+G + E+      +   K    +  YS  I+GL K  +++ A 
Sbjct: 287 VAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEAN 346

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     V + V Y+ +I G    G + +A  +  DM    ++PN +T  +LI GF
Sbjct: 347 CVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGF 406

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            + ++  +   +L +M  + +  +    S+V++ L 
Sbjct: 407 CKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLC 442



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 103/239 (43%), Gaps = 35/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+  ++ A     +M+ + + P ++ ++    GL ++ +++ A  +  EM   G
Sbjct: 297 IIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELG 356

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS---GRLE 118
              +   Y   IDG CK G I E++++   +       +    + LI G CKS   G+ E
Sbjct: 357 FVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAE 416

Query: 119 IALE--LFHSLP--------------------------RGVLVADVVT----YSIMIHGL 146
             LE  +   LP                          R +L+ ++       + ++ GL
Sbjct: 417 NVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGL 476

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              G+  +A +L+  +      PN++T   LIHG  +     + ++LL  M E+ ++ D
Sbjct: 477 CKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFD 535



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 44/75 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+CK  + + A  L +EM  KGI PD V +N    GL +  +VE AFK+ DEM   
Sbjct: 751 IMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSG 810

Query: 61  GVAADTRTYTIFIDG 75
            V  D  TYT  IDG
Sbjct: 811 AVCLDEITYTTLIDG 825


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 115/204 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K   ++  + ++ +M      PDV+ +N L     +  ++ +AF+   EM+ +G
Sbjct: 97  LIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANG 156

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+ FID  CK G + E+++ F  +R +    +   Y+ LID  CK+G L  AL
Sbjct: 157 LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEAL 216

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +VVTY+ ++ GL  +G+M +A ++F  M    VAPN  T+  L+HGF
Sbjct: 217 KLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 276

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           I+  E     ++L +MKEK + PD
Sbjct: 277 IKAKEMEYAKDILKEMKEKCIKPD 300



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 123/225 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK + +  A     EM + G+KP+VV ++T      +   ++ A K F +M+R  
Sbjct: 132 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA 191

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID  CK G + E+++L   +     +L++  Y+ L+DGLC+ GR++ A 
Sbjct: 192 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 251

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F ++    +  +  TY+ ++HG     +M+ A D+  +M+E  + P+++ +GT++ G 
Sbjct: 252 EVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGL 311

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
              +   +   L+ ++KE  +  +A I + ++D   K+  +  +L
Sbjct: 312 CNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 356



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 98/201 (48%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            + +M + GIK  V  +N +   L +   +E A  LF +M+  G   D  TY   IDG  
Sbjct: 43  FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 102

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + E + +F  ++   C+ D+  Y+ LI+  CK  R+  A E  H +    L  +VV
Sbjct: 103 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 162

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TYS  I     +G + +A   F+DM   A+ PN  T+ +LI    +    ++ ++L+ ++
Sbjct: 163 TYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEI 222

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            +  +  +    + ++D L +
Sbjct: 223 LQAGIKLNVVTYTALLDGLCE 243



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K KE+E A ++  EM  K IKPD++++ T+  GL    ++E A  L  E++  G
Sbjct: 272 LVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 331

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  +D   K+G   E++ L   +      LD      L+DGLCK+   E+A 
Sbjct: 332 INTNAVIYTTLMDAYFKSGQATEALTLLEEM------LD------LVDGLCKNNCFEVAK 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    ++ D + Y+ +I G    G + +A +L   M E  +  ++  +  LI G 
Sbjct: 380 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGL 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  K   LL +M  K V+PD
Sbjct: 440 SHSGQVQKARNLLDEMIGKGVLPD 463



 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 102/196 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+ +CK   ++ A+  + +M    + P+   + +L     +   +  A KL +E+ + G
Sbjct: 167 FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG 226

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  +DGLC+ G + E+ E+FR +       + + Y+ L+ G  K+  +E A 
Sbjct: 227 IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAK 286

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +  D++ Y  ++ GL N+ ++++A  L  +++E+ +  N + + TL+  +
Sbjct: 287 DILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAY 346

Query: 182 IRINEPSKVIELLHKM 197
            +  + ++ + LL +M
Sbjct: 347 FKSGQATEALTLLEEM 362



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           +E A + F +M++  V    R+    +  L K G    S + F+ +     +  +  Y+ 
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +ID LCK G LE+A  LF  +       D+VTY+ +I G    G +D+   +F  M++  
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             P+VIT+  LI+ F +     K  E LH+MK   + P+    S  +D   K  +   ++
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 227 PSFTVHER 234
             F    R
Sbjct: 182 KFFVDMRR 189



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A   + +M    + P     N L   L ++ + + + K F +M   G+     TY I
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            ID LCK G +  +  LF  ++      DI  Y+ LIDG  K G L+  + +F  +    
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+      +M KA +   +M+ N + PNV+T+ T I  F +     + I
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
           +    M+   + P+    + ++D
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLID 204



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 12/213 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  AL L  E+L  GIK +VV +  L  GL E  +++ A ++F  M   G
Sbjct: 202 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  TYT  + G  K   +  + ++ + ++    + D+  Y  ++ GLC   RLE A 
Sbjct: 262 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  + V Y+ ++   +  GQ  +A  L  +M +            L+ G 
Sbjct: 322 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD------------LVDGL 369

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + N      +L  +M +K +MPD    + ++D
Sbjct: 370 CKNNCFEVAKKLFDEMLDKGMMPDKIAYTALID 402



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 23/189 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF---------- 51
           ++ G C    +E A  L  E+   GI  + VI+ TL    F+  Q   A           
Sbjct: 307 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLV 366

Query: 52  -------------KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE 98
                        KLFDEM   G+  D   YT  IDG  K+G + E++ L   +  +  E
Sbjct: 367 DGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGME 426

Query: 99  LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           LD+ AY+ LI GL  SG+++ A  L   +    ++ D V Y  +I   Y  G++D+A +L
Sbjct: 427 LDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALEL 486

Query: 159 FLDMEENAV 167
             +M +  +
Sbjct: 487 QNEMAKRGM 495



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CKN   E A  L+ EML KG+ PD + +  L  G  +   ++ A  L D M   G
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  I GL  +G + ++  L   +       D   Y CLI      G+++ AL
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 484

Query: 122 ELFHSLPRGVLVADVVTYSI 141
           EL + + +  ++  +  +++
Sbjct: 485 ELQNEMAKRGMITGLSDHAV 504


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK   ++ A    + M S G  PD + + T+  GL    + E A +L  EM R 
Sbjct: 356 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 415

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+  FI  LC+ G I ++  L   +    CE++I  Y+ L++G C  GR++ A
Sbjct: 416 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 475

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF+S+P      + +TY+ ++ GL N  ++D A +L  +M +   APNV+TF  L+  
Sbjct: 476 LELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSF 532

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +     + IEL+ +M E    P+    + ++D + K+
Sbjct: 533 FCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKD 571



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+  +++ A  L + M    + PD   +  +  GL +  +V  A  L D+M   G
Sbjct: 150 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT+ ++ +CK+    +++E+   +R   C  +I  Y+ +I+G+C+ GR++ A 
Sbjct: 207 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 266

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E  + L       D V+Y+ ++ GL    + +   +LF +M E    PN +TF  L+  F
Sbjct: 267 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 326

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     + I++L +M       + ++ +IV++ + K
Sbjct: 327 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 363



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+      A  +       G   DV  +NTL  G     Q++ A +L   M    
Sbjct: 115 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--- 171

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TYT  I GLC  G + E++ L   +    C+  +  Y+ L++ +CKS     A+
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 231

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +       ++VTY+++I+G+  +G++D A +    +      P+ +++ T++ G 
Sbjct: 232 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 291

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   V EL  +M EKN MP+     ++V    +
Sbjct: 292 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 328



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 95/199 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K  E    L++EM+ K   P+ V  + L         VERA ++ ++M   G
Sbjct: 287 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 346

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            AA+T    I I+ +CK G + ++ +    +    C  D  +Y+ ++ GLC++ R E A 
Sbjct: 347 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 406

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     + VT++  I  L   G +++A  L   M E+    N++T+  L++GF
Sbjct: 407 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 466

Query: 182 IRINEPSKVIELLHKMKEK 200
                    +EL + M  K
Sbjct: 467 CVQGRVDSALELFYSMPCK 485



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C    +  AL+L  +ML +G +P VV +  L   + +     +A ++ DEM+  G
Sbjct: 182 IIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG 241

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + I+G+C+ G + ++ E    L     + D  +Y+ ++ GLC + R E   
Sbjct: 242 CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 301

Query: 122 ELF------HSLP-------------RGVLV----------------ADVVTYSIMIHGL 146
           ELF      + +P             RG +V                A+    +I+I+ +
Sbjct: 302 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 361

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A     +M     +P+ I++ T++ G  R        ELL +M  KN  P+ 
Sbjct: 362 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 421

Query: 207 SIVSIVVDLLAK 218
              +  + +L +
Sbjct: 422 VTFNTFICILCQ 433



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    ++ AL L+  M     KP+ + + TL  GL    +++ A +L  EM +  
Sbjct: 462 LVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 518

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T+ + +   C+ G + E++EL   +    C  ++  Y+ L+DG+ K    E AL
Sbjct: 519 CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEAL 578

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H L    +  D+VTYS +I  L  + ++++A  +F  +++  + P  + +  ++   
Sbjct: 579 ELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLAL 638

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +       I+    M     MP+
Sbjct: 639 CKRCNTDGAIDFFAYMVSNGCMPN 662



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           RA +L D     G A D    T  I  LC+ G   ++  + R        +D+ AY+ L+
Sbjct: 92  RAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 151

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            G C+ G+L+ A  L  S+P   +  D  TY+ +I GL + G++ +A  L  DM      
Sbjct: 152 AGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           P+V+T+  L+    +     + +E+L +M+ K   P+    +++++ + +
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 258



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C  + ++ A  L +EML K   P+VV  N L     +   ++ A +L ++M   G
Sbjct: 494 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 553

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +DG+ K+    E++EL   L       DI  YS +I  L +  R+E A+
Sbjct: 554 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 613

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +    +    V Y+ ++  L      D A D F  M  N   PN +T+ TLI G 
Sbjct: 614 KMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 673

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
              +   +  +LL ++  + V+
Sbjct: 674 ANEDFLKETRDLLRELCSRGVL 695



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 84/167 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   ++ A+ L  +M+  G  P+++ +NTL  G+ +    E A +L   +  +
Sbjct: 528 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 587

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  TY+  I  L +   + E++++F  ++ L        Y+ ++  LCK    + A
Sbjct: 588 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGA 647

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           ++ F  +     + + +TY  +I GL N+  + +  DL  ++    V
Sbjct: 648 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 118/213 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+   ++ AL L+ EM+S G+ P+++ +N +  GLF   +   A +L+  + + G
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR++ A 
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV DV TYS+M   L   G +++  DLFL MEEN  + +     +++   
Sbjct: 677 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++  + ++    L  + EK+   +AS  S +++
Sbjct: 737 LQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ K  + + A + Y EML +GI PDVV ++++   L +   +++A ++ + M ++G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   + G C +G   E++   + +R    E ++  YS L++ LCK+GR   A 
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  D+ TY  ++ G    G + + H L   M  N + P+   F  LI  +
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM++  + P+      V+D+L K+
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   +++ A  L + M+S G+KPD+V + TL  G   + +++ A  LF EM   G
Sbjct: 522 LIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 581

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL        + EL+ ++     +L++  Y+ ++ GLCK+   + AL
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+MD+A DLF     N + P+V T+  +    
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     D+ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 702 IEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 761

Query: 241 SNV 243
           S  
Sbjct: 762 STA 764



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 123/228 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+  ++ A+  + +M+ +G+ P+++++ +L  GL    + ++A +L  EM   G
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  +   ID  CK G ++ES +LF  +  +  + DI  Y+ LIDG C +G+++ A 
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  S+    +  D+VTY  +I+G     +MD A  LF +M  + V+PN+IT+  ++ G 
Sbjct: 537 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
                 +   EL   + +     + S  +I++  L KN ++  +L  F
Sbjct: 597 FHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 644



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   + + A  L  EML +GI  + +  N++     +  +V  + KLFD M R G
Sbjct: 452 LIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   IDG C  G + E+ +L  ++  +  + DI  Y  LI+G C+  R++ AL
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +++TY+I++ GL++  +   A +L++ + ++     + T+  ++HG 
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 668



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 3/222 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L+ G C     + AL L   M      G  PDVV +NT+  G F+    ++A+  + EM 
Sbjct: 169 LLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEML 228

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+  D  TY+  I  LCK   + +++E+  T+       D   Y+ ++ G C SG+ +
Sbjct: 229 DRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 288

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+     +    +  +VVTYS +++ L  +G+  +A  +F  M +  + P++ T+ TL+
Sbjct: 289 EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G+       ++  LL  M    + PD  + +I++   AK E
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE 390



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 7/245 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C+   ++        ++ KG + D +    L  GL    +   A  +    M  
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   D  +Y   + GLC      E++EL   +   R      D+ +Y+ +++G  K G 
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 117 LEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            + A   +H  L RG+L  DVVTYS +I  L     MDKA ++   M +N V P+ +T+ 
Sbjct: 217 SDKAYSTYHEMLDRGIL-PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF-TVHER 234
           +++HG+    +P + I  L KM+   V P+    S +++ L KN  S  +   F ++ +R
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 235 QEEVD 239
             E D
Sbjct: 336 GLEPD 340



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  CKN     A  ++  M  +G++PD+  + TL  G      +     L D M R+G
Sbjct: 312 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNG 371

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   + I I    K   + +++ +F  +R      ++  Y  +ID LCKSG ++ A+
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L  +++ Y+ +IHGL    + DKA +L L+M +  +  N I F ++I   
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSH 491

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  K+ +L+ ++    V PD    + ++D
Sbjct: 492 CKEGRVIESEKLFDLMVRI---GVKPDIITYNTLID 524



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 106/213 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC + + + A+    +M S G++P+VV +++L   L +  +   A K+FD M + G
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G    G +VE   L   +     + D   ++ LI    K  +++ A+
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAM 396

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L  +VV Y  +I  L   G +D A   F  M +  + PN+I + +LIHG 
Sbjct: 397 LVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGL 456

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              ++  K  EL+ +M ++ +  +    + ++D
Sbjct: 457 CTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 3/155 (1%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL--KCELDIQAYS 105
           E A  +FDE+ R G  A        +  + ++          R  R    K    +  Y+
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     D +T++ ++ GL  D +   A D+ L  M E
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
               P+V ++  L+ G    N   + +ELLH M +
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD 191



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 58/120 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKN   + AL ++  +    ++ +    N +   L +  +++ A  LF     +
Sbjct: 626 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 685

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D RTY++  + L + G + E  +LF ++    C  D +  + ++  L + G +  A
Sbjct: 686 GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C+   +  AL+L  EM+S G+ P+VV  NTL  GL    +++ A ++F  MQ+  
Sbjct: 429 LIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSK 488

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    + V  D +TY I I GL   G   E+ EL+  +       D   Y+ +IDG
Sbjct: 489 MDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDG 548

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       DVVT++ +I+G    G++    ++F +M    +  N
Sbjct: 549 LCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVAN 608

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLIHGF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 609 AITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 660



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+C +     A  L  EM  + + PDVV  + L   L +  +   A +L++EM   G
Sbjct: 289 MINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRG 348

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   IDG  K   +  +  +F  +    C  D+  +S LIDG C + R++  +
Sbjct: 349 IIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGM 408

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H + R  LVA+ +TY+ +IHG    G ++ A DL  +M  + V PNV+T  TL+ G 
Sbjct: 409 KLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGL 468

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++  +  DAS
Sbjct: 469 CNNGKLKDALEMFKVMQKSKMDLDAS 494



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 5/208 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEM--LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +++G CK  +   ALNL  +M  +S+ IKP+VVI++ +  GL++  +   A  LF EMQ 
Sbjct: 218 IVDGMCKMGDTVSALNLLRKMEEVSR-IKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQE 276

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G++ +  TY   I+G C +G   E+  L R +   K   D+  +S LI+ L K G+   
Sbjct: 277 KGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFE 336

Query: 120 ALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           A EL++  LPRG+ + + +TY+ MI G     ++D A  +F  M     +P+VITF  LI
Sbjct: 337 AEELYNEMLPRGI-IPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILI 395

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDA 206
            G+         ++LLH+M  + ++ + 
Sbjct: 396 DGYCGAKRVDDGMKLLHEMSRRGLVANT 423



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G  P +V  +TL  GL    +V  A   F ++ + 
Sbjct: 116 ILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKP 175

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V A    +T  ++GLC+ G +VE+V L   +     + +   Y  ++DG+CK G    A
Sbjct: 176 NVIA----FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSA 231

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     +  +VV YS +I GL+ DG+   A +LF +M+E  ++PN+ T+  +I+
Sbjct: 232 LNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMIN 291

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S+   LL +M E+ + PD    S++++ L K
Sbjct: 292 GFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK 330



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%), Gaps = 11/204 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-----------IKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M               ++PDV  +N L  GL    +   A
Sbjct: 464 LLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEA 523

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY   IDGLCK   + E+ ++F ++       D+  ++ LI+G
Sbjct: 524 EELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLING 583

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK GR+   LE+F  + R  +VA+ +TY  +IHG    G ++ A D+F +M  + V P+
Sbjct: 584 YCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPD 643

Query: 171 VITFGTLIHGFIRINEPSKVIELL 194
            IT   ++ G     E  + ++ L
Sbjct: 644 TITIRNMLTGLWSKEELKRAVQCL 667



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   +  A+ L   M+  G++P+ + + T+  G+ ++     A  L  +M+   
Sbjct: 183 LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 242

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  IDGL K+G   ++  LF  ++      ++  Y+C+I+G C SGR   A
Sbjct: 243 RIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEA 302

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  DVVT+S++I+ L  +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 303 QRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDG 362

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + N       + + M  K   PD    SI++D
Sbjct: 363 FSKQNRLDAAERMFYLMATKGCSPDVITFSILID 396



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  AL+ + ++     KP+V+   TL  GL    +V  A  L D M  DG
Sbjct: 152 LLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDG 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  +  TY   +DG+CK G  V ++ L R +  + + + ++  YS +IDGL K GR   A
Sbjct: 208 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDA 267

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  ++ TY+ MI+G  + G+  +A  L  +M E  ++P+V+TF  LI+ 
Sbjct: 268 QNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINA 327

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++  +  +  EL ++M  + ++P+    + ++D  +K 
Sbjct: 328 LVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQ 366



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN   K  +   A  LY+EML +GI P+ + +N++  G  + ++++ A ++F  M   
Sbjct: 323 VLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATK 382

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  T++I IDG C    + + ++L   +       +   Y+ LI G C+ G L  A
Sbjct: 383 GCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAA 442

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE-----------NAVAP 169
           L+L   +    +  +VVT + ++ GL N+G++  A ++F  M++           N V P
Sbjct: 443 LDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEP 502

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +V T+  LI G I   + S+  EL  +M  + ++PD    + V+D L K  
Sbjct: 503 DVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQS 553



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 80/155 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G     +   A  LY EM  +G+ PD + +N++  GL +  +++ A ++FD M   
Sbjct: 509 ILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSK 568

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  T+T  I+G CK G + + +E+F  +       +   Y  LI G C+ G +  A
Sbjct: 569 GFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGA 628

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           L++F  +    +  D +T   M+ GL++  ++ +A
Sbjct: 629 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K ++ A++L+  M+     P V+    L   +  + + +    L  +M+   
Sbjct: 47  LQSGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRR 106

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  ++TI I   C    +  ++  F  +  L     +  +S L+ GLC   R+  AL
Sbjct: 107 IPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEAL 166

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             FH + +     +V+ ++ +++GL  +G++ +A  L   M E+ + PN IT+GT++ G 
Sbjct: 167 HFFHQICK----PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 222

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            ++ +    + LL KM+E   + P+  I S ++D L K+
Sbjct: 223 CKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKD 261


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 108/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I PDVV +N L     +  +   A +L+DEM   G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   IDG CK   +  + ++F  +    C  D+  ++ LIDG C + R++  +
Sbjct: 356 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +PR  LVA+ VTY+ +IHG    G ++ A DL   M  + V P+++T  TL+ G 
Sbjct: 416 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++  +  DAS
Sbjct: 476 CDNGKLKDALEMFKAMQKSKMDLDAS 501



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C   ++  AL+L  +M+S G+ PD+V  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 436 LIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 495

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D  TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 496 MDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  +
Sbjct: 556 LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 615

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            I + TLI+GF ++   +  +++  +M    V PD  +I +++    +K E+
Sbjct: 616 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEEL 667



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV+ +N L  GL    +   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 530

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 590

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VAD + Y  +I+G    G ++ A D+F +M  + V P+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ GF    E  + + +L  ++
Sbjct: 651 TITIRNMLTGFWSKEELERAVAMLEDLQ 678



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  AL+ + +M     +P+VV   TL  GL    ++  A  L D M  DG
Sbjct: 155 LLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY   +DG+CK G  V ++ L R +  +     ++  YS +ID LCK GR   A
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ MI G  + G+   A  L  +M E  ++P+V+T+  LI+ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F++  +  +  EL  +M  + ++P+    + ++D   K +
Sbjct: 335 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 374



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 114/235 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+     A NL++EM  KGI PD+  +N++ +G     +   A +L  EM    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I+   K G   E+ EL+  +       +   Y+ +IDG CK  RL+ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ +       DV T++ +I G     ++D   +L  +M    +  N +T+ TLIHGF
Sbjct: 381 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             + + +  ++L  +M    V PD    + ++D L  N    ++L  F   ++ +
Sbjct: 441 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 495



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV   TL  GL    +V  A   F +M   
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFET 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+T  ++GLC+ G IVE+V L   +     +     Y  ++DG+CK G    A
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     ++ +VV YS +I  L  DG+   A +LF +M+E  + P++ T+ ++I 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S   +LL +M E+ + PD    + +++   K
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   ALNL  +M     I P+VVI++ +   L +  +   A  LF EMQ  
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C +G   ++ +L + +   K   D+  Y+ LI+   K G+   A
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TY+ MI G     ++D A D+F  M     +P+V TF TLI 
Sbjct: 345 AELYDEMLPRGI-IPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 403

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
           G+         +ELLH+M  + ++ + 
Sbjct: 404 GYCGAKRIDDGMELLHEMPRRGLVANT 430



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+S+ML     P VV    L   +  + + +    L+ +M+R  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++ I I   C    +  ++  F  +  L    D+  ++ L+ GLC   R+  AL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH +       +VVT++ +++GL  +G++ +A  L   M E+ + P  IT+GT++ G 
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            +  +    + LL KM+E  +++P+  I S ++D L K+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   I  A+ L   M+  G++P  + + T+  G+ +      A  L  +M+   
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  ID LCK+G   ++  LF  ++      D+  Y+ +I G C SGR   A
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  DVVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + +      ++ + M  K   PD    + ++D
Sbjct: 370 FCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 403



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  D +I+ TL  G  ++  +  A  +F EM   G
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 646

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + G      +  +V +   L++
Sbjct: 647 VYPDTITIRNMLTGFWSKEELERAVAMLEDLQM 679


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 129/243 (53%), Gaps = 6/243 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  ++   + L  EM +KG+ P VV + TL   L     +E+   L  EM+  
Sbjct: 299 VLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRER 358

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  + + Y   ID LCK     +++ + + +    C+ D   +S LI GLC+ GR++ A
Sbjct: 359 RLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEA 418

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L     R  L  ++ +Y+ +IHG    G++  A +L ++M E    P+V+TFG LIHG
Sbjct: 419 ERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHG 478

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
            +   + S+ + +  KM  + ++PDA+I ++++  L K ++    LP+       EE+ E
Sbjct: 479 LVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKM----LPA--ARNLIEEMLE 532

Query: 241 SNV 243
            NV
Sbjct: 533 QNV 535



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 111/233 (47%), Gaps = 1/233 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK K +  A NL  EML + + PD  ++ TL  G      ++ A K+F+ M++ 
Sbjct: 509 VLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQK 568

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I G C+ G + E+VE   T+R +    D   Y+ LI G  K G +  A
Sbjct: 569 GIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGA 628

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +     +VV YS +I+G    G  D A  LF  ME   + PNVIT+  LI  
Sbjct: 629 LSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGS 688

Query: 181 FIRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEISLNSLPSFTVH 232
             + ++  +       M      P D ++ S+V  L       ++S  S TV+
Sbjct: 689 LFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVN 741



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 105/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G     ++  AL +  +M ++ + PD  I+N L  GL +   +  A  L +EM    
Sbjct: 475 LIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQN 534

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT  IDG  +N  + E+ ++F  +       D+  Y+ +I G C+ G +  A+
Sbjct: 535 VHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAV 594

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E   ++ +   + D  TY+ +I G    G +  A  L  DM +    PNV+ + +LI+G+
Sbjct: 595 ECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGY 654

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++ +      L   M+ + + P+    +I++  L K +
Sbjct: 655 CKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKD 693



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 100/213 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   E+  A NL  EM+ +G  PDVV    L  GL    QV  A  + ++M    
Sbjct: 440 LIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQ 499

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + I GLCK   +  +  L   +       D   Y+ LIDG  ++  L+ A 
Sbjct: 500 LLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEAR 559

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +  +  DVV Y+ MI G    G M++A +    M +    P+  T+ TLI G+
Sbjct: 560 KIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGY 619

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +    S  + LL  M ++   P+    S +++
Sbjct: 620 AKQGNISGALSLLCDMMKRRCQPNVVAYSSLIN 652



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 97/217 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+   ++ A  L  E     + P++  + +L  G     +V  A  L  EM   G
Sbjct: 405 LISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERG 464

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I GL   G + E++ +   +   +   D   Y+ LI GLCK   L  A 
Sbjct: 465 HTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAAR 524

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  D   Y+ +I G   +  +D+A  +F  ME+  + P+V+ +  +I G+
Sbjct: 525 NLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGY 584

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    ++ +E +  M++   +PD    + ++   AK
Sbjct: 585 CQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAK 621



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 78/169 (46%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A KL+DEM  +   AD  +  + + GLC  G + + ++L        C  +   Y+ LID
Sbjct: 243 ARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLID 302

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C+ G +   + L   +    L+  VVTY  ++  L   G ++K   L  +M E  + P
Sbjct: 303 GYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPP 362

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           NV  + ++I    +    S+ + +L +M      PDA   S ++  L +
Sbjct: 363 NVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQ 411



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK  + + A  L+  M S+G+ P+V+ +  L   LF+  +V RA   F+ M  + 
Sbjct: 650 LINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQ 709

Query: 62  VAADTRTYTIFIDGLCKN-GYIVES--------------VELFRTLRILKCELDIQAYSC 106
            + +  T    + GLC +   I+ S              +++FR L   +C+    AY+ 
Sbjct: 710 CSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNA 769

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           +I  LC    L  AL+L + +       D  T+  +++G  + G+
Sbjct: 770 IIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGK 814


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 130/236 (55%), Gaps = 16/236 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK   ++ A N  + M+ +GIKPDVV +N+L      +++V +A  +F+ M   
Sbjct: 316 ILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHR 375

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+ R+Y+I I+  CK   + ++++LF+ +   +   ++  YS LIDGLCKSGR+  A
Sbjct: 376 GVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYA 435

Query: 121 LEL---FH---------SLPRGV----LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           LEL    H         +L R +    +  ++ TY+I+I GL   G+++ A ++F D+  
Sbjct: 436 LELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLV 495

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                 V T+  +IHGF       + + LL KMK+   +P+A    I++  L  N+
Sbjct: 496 KGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFDND 551



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+K    A +LYSEM+SK I PDV  +N L  G   + +++ A  LF++M  + 
Sbjct: 247 IIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSEN 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +D  CK G + E+      +     + D+  Y+ L+D  C    +  A 
Sbjct: 307 INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAK 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++    + A+V +YSIMI+       +D+A  LF +M    + PNVIT+ +LI G 
Sbjct: 367 SIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGL 426

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +    S  +EL  +M ++   PD
Sbjct: 427 CKSGRISYALELNDEMHDRGQQPD 450



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 16/176 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +CK K ++ A+ L+ EM  K I P+V+ +++L  GL +  ++  A +L DEM   
Sbjct: 386 IMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDR 445

Query: 61  GVAAD----TR------------TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           G   D    TR            TYTI IDGLCK G + ++  +F  L +    + +  Y
Sbjct: 446 GQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTY 505

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +I G C  G  + A+ L   +     + + VTY I+I  L+++ + DKA + F+
Sbjct: 506 TVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFDNDENDKAENFFV 561



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 14  GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
             L L   +  K ++P++V++NT+   + +      AF L+ EM    +  D  TY   I
Sbjct: 224 APLQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALI 283

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
           +G C  G + +++ LF  +       D+  ++ L+D  CK GR++ A      + +  + 
Sbjct: 284 NGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK 343

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            DVVTY+ ++       +++KA  +F  M    V  NV ++  +I+ F +I    + ++L
Sbjct: 344 PDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKL 403

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKN-EISLNSLPSFTVHERQEEVD 239
             +M  K + P+    S ++D L K+  IS     +  +H+R ++ D
Sbjct: 404 FKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPD 450


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 119/213 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK++ +E AL +Y EM  K + PDVV +  +  GL +  +VE A  +F EM+  G
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG 152

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   ID L K G + E+  L   + +     D+  Y+ L+DGL K+G    A 
Sbjct: 153 VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAE 212

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L    LV + VTYS +I G    G ++K   L  +MEE  + PNVI + +++ G+
Sbjct: 213 DMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGY 272

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +    ++ ++++ KM ++N++P+  +   ++D
Sbjct: 273 TKKGLLNEAMDVMRKMVQRNILPNVFVYGTLID 305



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+N EI  A+ L   M ++G  PD+V +NTL  G  +I  +  A KL  E+   
Sbjct: 22  VLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLV 81

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TYT  ID  CK+  + +++ ++  + +     D+  Y+C+++GLCKSG++E A
Sbjct: 82  NLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEA 141

Query: 121 LELFHSLP------------------------------RGVLVA-----DVVTYSIMIHG 145
             +F  +                               +G +V      DVV Y+ ++ G
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDG 201

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L+  G  + A D+F  + E ++ PN +T+  LI G  ++ + +K   LL +M+EK++ P+
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 206 ASIVSIVVDLLAK 218
             + S +VD   K
Sbjct: 262 VIVYSSIVDGYTK 274



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 13/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK+ ++E A +++ EM   G+ P+   + TL   LF+   V  AF L   M   G
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  +DGL K G    + ++F+ L       +   YS LIDG CK G +    
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGE 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +V+ YS ++ G    G +++A D+   M +  + PNV  +GTLI G+
Sbjct: 248 LLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
            + ++    ++L  +MK + +  +  ++   V+ L ++              R EE DE
Sbjct: 308 FKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRS-------------GRMEEADE 353



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 107/205 (52%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I+  V   N L  G     ++ RA +L + M+ +G A D  TY   ++G CK G +  + 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +L   + ++  E ++  Y+ LID  CKS  LE AL ++  +    LV DVVTY+ +++GL
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++++A  +F +MEE  V PN  ++ TLI    +    ++   L  +M  + +  D 
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTV 231
            + + ++D L K  ++ N+   F V
Sbjct: 193 VVYTALMDGLFKAGMANNAEDMFQV 217



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY K   +  A+++  +M+ + I P+V ++ TL  G F+  Q   A  LF EM+  G
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +      F++ L ++G + E+ ELF+ +       D   Y+ ++DG  K+G+   A 
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAF 387

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       DVV Y+++I+GL+  G+ + +      M +  +AP+  TF T+I+ +
Sbjct: 388 NIAQEMTEKSSGFDVVAYNVLINGLFKLGKYE-SESFHTGMRQLGLAPDSATFNTMINAY 446

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
            +       ++LL++MK   + P++   +I+V  L A  EI
Sbjct: 447 CKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEI 487



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C   EIE  ++L ++ML  G  P    H  +     +  + +    + D++   
Sbjct: 476 ILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGM 535

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   I   C+ G I  +  +F+ +       DI  Y+ LI G C S  L+ A
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  +V TY+I++ GL     + +A  L   M+E  + PN  T+  L+ G
Sbjct: 596 FAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSG 655

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +I    + ++L  +M  K  +P     ++++   AK +
Sbjct: 656 HGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGK 695



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 104/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K++  +  L+++ +++  G+K D+  +NTL      +  + RA  +F +M   G
Sbjct: 512 VLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I G C + ++ ++  +   +       +++ Y+ L+ GL  +  ++ A 
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA 631

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    LV +  TY I++ G    G M +   L+ +M      P   T+  LI  F
Sbjct: 632 GLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCF 691

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  + S+  EL+ +M+ + + P++S   I++
Sbjct: 692 AKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 12/229 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +C+   I  A  ++ +M+ KGI  D++ +N L  G      +++AF +  +M  +G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL     I E+  L   ++      +   Y  L+ G  K G ++  +
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +     V    TY+++I       +M +A +L  +M+   + PN  T+  LI G+
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGW 726

Query: 182 IRINE------------PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++++             ++   L  +M EK  +P  + ++ +   LAK
Sbjct: 727 YKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAK 775



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K      A +++  +L + + P+ V ++ L  G  ++  V +   L  EM+   
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  +DG  K G + E++++ R +       ++  Y  LIDG  K+ +  IAL
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIAL 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    L  +       ++ L   G+M++A +LF DM    + P+ + + +++ GF
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + S    +  +M EK+   D    +++++ L K
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K   +  A  L   M+ +GI  DVV++  L  GLF+      A  +F  +  + 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  IDG CK G + +   L + +       ++  YS ++DG  K G L  A+
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  ++ +V  Y  +I G +   Q   A DLF +M+   +  N     + ++  
Sbjct: 283 DVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNL 342

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     +  EL   M  + ++PD
Sbjct: 343 KRSGRMEEADELFKDMMSRGLLPD 366



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++     L  EM  K I P+V++++++  G  +   +  A  +  +M +  
Sbjct: 233 LIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   IDG  K      +++LF+ ++    E +       ++ L +SGR+E A 
Sbjct: 293 ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEAD 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    L+ D V Y+ M+ G +  G+   A ++  +M E +   +V+ +  LI+G 
Sbjct: 353 ELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGL 412

Query: 182 IRINEPSKVIELLHK-MKEKNVMPDASIVSIVVDLLAK 218
            ++ +     E  H  M++  + PD++  + +++   K
Sbjct: 413 FKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCK 448



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 1/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K  + E   + ++ M   G+ PD    NT+     +   +  A KL +EM+  
Sbjct: 407 VLINGLFKLGKYESE-SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSY 465

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++ T  I +  LC  G I ++++L   + ++        +  ++D   KS R ++ 
Sbjct: 466 GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVI 525

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   L    +  D+ TY+ +I      G + +A  +F DM    +  ++IT+  LIHG
Sbjct: 526 LHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHG 585

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +   +   K   +  +M  + V P+    +I++  L+
Sbjct: 586 YCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G    + I+ A  L ++M  +G+ P+   ++ L  G  +I  ++   KL+ EM   
Sbjct: 616 ILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITK 675

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    TRTY + I    K   + ++ EL + +++     +   Y  LI   C   +L   
Sbjct: 676 GFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI---CGWYKLSKQ 732

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL  SL R        +Y              +A  LF +M E    P   T   +   
Sbjct: 733 PELNKSLKR--------SYQA------------EAKRLFEEMNEKGFIPCENTLACISFT 772

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
             +  + +    +L+K+ +K V
Sbjct: 773 LAKPGKKADAQRILNKLYKKKV 794


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK   ++ A    + M S G  PD + + T+  GL    + E A +L  EM R 
Sbjct: 325 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+  FI  LC+ G I ++  L   +    CE++I  Y+ L++G C  GR++ A
Sbjct: 385 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF+S+P      + +TY+ ++ GL N  ++D A +L  +M +   APNV+TF  L+  
Sbjct: 445 LELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSF 501

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +     + IEL+ +M E    P+    + ++D + K+
Sbjct: 502 FCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKD 540



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+  +++ A  L + M    + PD   +  +  GL +  +V  A  L D+M   G
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT+ ++ +CK+    +++E+   +R   C  +I  Y+ +I+G+C+ GR++ A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E  + L       D V+Y+ ++ GL    + +   +LF +M E    PN +TF  L+  F
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     + I++L +M       + ++ +IV++ + K
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 332



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+      A  +       G   DV  +NTL  G     Q++ A +L   M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--- 140

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TYT  I GLC  G + E++ L   +    C+  +  Y+ L++ +CKS     A+
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +       ++VTY+++I+G+  +G++D A +    +      P+ +++ T++ G 
Sbjct: 201 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   V EL  +M EKN MP+     ++V    +
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 95/199 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K  E    L++EM+ K   P+ V  + L         VERA ++ ++M   G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            AA+T    I I+ +CK G + ++ +    +    C  D  +Y+ ++ GLC++ R E A 
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     + VT++  I  L   G +++A  L   M E+    N++T+  L++GF
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 182 IRINEPSKVIELLHKMKEK 200
                    +EL + M  K
Sbjct: 436 CVQGRVDSALELFYSMPCK 454



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C    +  AL+L  +ML +G +P VV +  L   + +     +A ++ DEM+  G
Sbjct: 151 IIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG 210

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + I+G+C+ G + ++ E    L     + D  +Y+ ++ GLC + R E   
Sbjct: 211 CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 270

Query: 122 ELF------HSLP-------------RGVLV----------------ADVVTYSIMIHGL 146
           ELF      + +P             RG +V                A+    +I+I+ +
Sbjct: 271 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A     +M     +P+ I++ T++ G  R        ELL +M  KN  P+ 
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390

Query: 207 SIVSIVVDLLAK 218
              +  + +L +
Sbjct: 391 VTFNTFICILCQ 402



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    ++ AL L+  M     KP+ + + TL  GL    +++ A +L  EM +  
Sbjct: 431 LVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 487

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T+ + +   C+ G + E++EL   +    C  ++  Y+ L+DG+ K    E AL
Sbjct: 488 CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEAL 547

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H L    +  D+VTYS +I  L  + ++++A  +F  +++  + P  + +  ++   
Sbjct: 548 ELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLAL 607

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +       I+    M     MP+
Sbjct: 608 CKRCNTDGAIDFFAYMVSNGCMPN 631



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C  + ++ A  L +EML K   P+VV  N L     +   ++ A +L ++M   G
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +DG+ K+    E++EL   L       DI  YS +I  L +  R+E A+
Sbjct: 523 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 582

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +    +    V Y+ ++  L      D A D F  M  N   PN +T+ TLI G 
Sbjct: 583 KMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 642

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
              +   +  +LL ++  + V+
Sbjct: 643 ANEDFLKETRDLLRELCSRGVL 664



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 3/169 (1%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A +L D     G A D    T  I  LC+ G   ++  + R        +D+ AY+ L+ 
Sbjct: 62  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 121

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C+ G+L+ A  L  S+P   +  D  TY+ +I GL + G++ +A  L  DM      P
Sbjct: 122 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 178

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +V+T+  L+    +     + +E+L +M+ K   P+    +++++ + +
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 84/167 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   ++ A+ L  +M+  G  P+++ +NTL  G+ +    E A +L   +  +
Sbjct: 497 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 556

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  TY+  I  L +   + E++++F  ++ L        Y+ ++  LCK    + A
Sbjct: 557 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGA 616

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           ++ F  +     + + +TY  +I GL N+  + +  DL  ++    V
Sbjct: 617 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 117/216 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK+ +I+  L L+ EML K +KP  V ++ +  GLF   +   A K+F EM   G
Sbjct: 621 LVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSG 680

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  TY I + GLC+N    E++ LF  L  + C+ DI   + +I+ L K  R E A 
Sbjct: 681 TAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEAN 740

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++    LV +V TY +MIH L  +G +++A  +F  ME++  AP+      +I   
Sbjct: 741 DLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 800

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  +  K    + K+    +  +AS  S+++ L +
Sbjct: 801 LQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFS 836



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++E A  +   M+S GI+PDVV +NTL  G  +  +++    LF EM    
Sbjct: 586 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKK 645

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   T TY+I +DGL   G    + ++F  +      +DI  Y  L+ GLC++   + A+
Sbjct: 646 VKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAI 705

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH L       D+   + +I+ LY   + ++A+DLF  +  + + PNV T+G +IH  
Sbjct: 706 TLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNL 765

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEI 221
           ++     +   +   M++    P + +++ I+  LL K +I
Sbjct: 766 LKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 806



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  E+  A NL +EM+ KG++PDVV +N++   L +   +++A  +  +M   G
Sbjct: 270 VIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TYT  I G   +G+  ES ++FR +        I  ++  +  LCK GR + A 
Sbjct: 330 VEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAE 389

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +     + D+V+YSI++HG   +G+    ++LF  M +  +  N   F  LI   
Sbjct: 390 EIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + +  +M+ + V PD    S ++    +
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCR 486



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G+C + ++  A  L SEM+SKGI +P++V  +++   L    +V  A  +F+ +   
Sbjct: 515 LIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHI 574

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+   IDG C  G + ++  +   +  +  E D+  Y+ L+ G CKSG+++  
Sbjct: 575 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDG 634

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    VTYSI++ GL++ G+   A  +F +M ++  A ++ T+  L+ G
Sbjct: 635 LILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 694

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R +   + I L HK+   +   D +I++ V++ L K
Sbjct: 695 LCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYK 732



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 104/207 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A  +  +M+ KG++PD + +  +  G       + + K+F +M   G
Sbjct: 305 IVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKG 364

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T+  F+  LCK+G   ++ E+F+ +       D+ +YS L+ G    GR     
Sbjct: 365 LIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMN 424

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFHS+    +VA+   ++I+I      G MD+A  +F +M+   V P+V+T+ TLI  F
Sbjct: 425 NLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAF 484

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASI 208
            R+   +  +E   +M    + P+  +
Sbjct: 485 CRMGRLADAMEKFSQMISIGLEPNTVV 511



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++GY          NL+  M  KGI  +    N L     +   ++ A  +F EMQ  
Sbjct: 409 ILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQ 468

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY+  I   C+ G + +++E F  +  +  E +   Y  LI G C  G L  A
Sbjct: 469 GVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKA 528

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL    + +G+   ++V +S +IH L N+G++  AHD+F  +      P ++TF +LI 
Sbjct: 529 KELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLID 588

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G+  + +  K   +L  M    + PD    + +V    K+
Sbjct: 589 GYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKS 628



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 2/236 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +I   C +   + AL++   M  +G    PDVV  NT+  G F+  +V +A  L +EM +
Sbjct: 233 VIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQ 292

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  D  TY   +D LCK   + ++  + R +     E D   Y+ +I G   SG  + 
Sbjct: 293 KGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKE 352

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + ++F  +    L+  +VT++  +  L   G+   A ++F  M      P+++++  L+H
Sbjct: 353 SAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLH 412

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           G+      + +  L H M +K ++ +    +I++   AK  +   ++  FT  + Q
Sbjct: 413 GYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQ 468



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 111/222 (50%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +C+   +  A+  +S+M+S G++P+ V++++L  G      + +A +L  EM   G
Sbjct: 480 LISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG 539

Query: 62  VA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +   +   ++  I  LC  G ++++ ++F  +  +     I  ++ LIDG C  G++E A
Sbjct: 540 IPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 599

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +  ++    +  DVVTY+ ++ G    G++D    LF +M    V P  +T+  ++ G
Sbjct: 600 FGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDG 659

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                  S   ++ H+M +     D     I++  L +N+++
Sbjct: 660 LFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLT 701



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 56/222 (25%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELFRTLRILKCE--- 98
           A  LFDE+ R G          F+  L        C NG  +  + LF   RI + E   
Sbjct: 93  AHHLFDELLRQGTPVHNPALNGFLAALARAPDSVSCSNGPAL-VLALFN--RICREEAGP 149

Query: 99  ----LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL---------------------- 132
               L +  Y  L+D  C++ R ++    F  L R  L                      
Sbjct: 150 RVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDE 209

Query: 133 --------------VADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGT 176
                         V + ++Y+ +I  L  D +  +A D+   M  E    +P+V++F T
Sbjct: 210 AVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNT 269

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +IHGF +  E SK   L+++M +K V PD    + +VD L K
Sbjct: 270 VIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCK 311



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+N   + A+ L+ ++ +   K D+ I NT+   L+++ + E A  LF  +   
Sbjct: 690 ILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTS 749

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC 97
           G+  +  TY + I  L K G + E+  +F ++    C
Sbjct: 750 GLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGC 786


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL---------FIGLF--------- 42
           ILI+GYCK +  +    L  EM+  G +P+ + +NTL         +I  F         
Sbjct: 177 ILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRR 236

Query: 43  -----------------EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                            ++ Q++ A++LF  M   G   D  TY I I G C+   I ++
Sbjct: 237 DCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA 296

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +L   +    C  D+  Y+ ++ GLCK+ +++ A E++  L  G    DVVT S +I G
Sbjct: 297 RQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDG 356

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    ++D A  L  +ME N  AP+V+ +  LIHGF + ++  K +    +M +K  +P 
Sbjct: 357 LCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 416

Query: 206 ASIVSIVVDLLAKN 219
               SIV+D L K+
Sbjct: 417 VITYSIVIDKLCKS 430



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + + K+ + A +L+   L     PD + ++TL  G  +    ++A++L DEM++ G
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I GLC NG +  ++  +R ++   C   +  Y+ L+D LCKS R+  A 
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSARISDAS 122

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       +VVTY+ +I+G    G MD+A  LF  M EN+ +P+V T+  LI G+
Sbjct: 123 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 182

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   P    +LL +M +    P+    + ++D L K+
Sbjct: 183 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 220



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 102/202 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +CK  +++ A  L+  M  +G  PD+  +N +  G    ++++ A +L + M   
Sbjct: 247 LMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   + GLCK   + E+ E++  LR     LD+   S LIDGLCKS RL+ A
Sbjct: 307 GCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDA 366

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + R     DVV Y+I+IHG     Q+DK+   F +M +    P VIT+  +I  
Sbjct: 367 EKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDK 426

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
             +         LL  M E+ V
Sbjct: 427 LCKSARVRDGCMLLKTMLERGV 448



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK+  I  A  +  +M+  G  P+VV +NTL  G  ++  ++ A  LF++M  +
Sbjct: 107 ILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLEN 166

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + D  TY I IDG CK     +  +L + +    CE +   Y+ L+D L KSG+   A
Sbjct: 167 SCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDA 226

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R        T+++MI      GQ+D A++LF  M +    P++ T+  +I G
Sbjct: 227 FNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISG 286

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N      +LL +M E    PD    + +V  L K
Sbjct: 287 ACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 324



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK ++ + A  L  EM  +GI P   ++NT+  GL +  +V+ A   + +MQR  
Sbjct: 39  LINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH- 97

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A    TYTI +D LCK+  I ++  +   +    C  ++  Y+ LI+G CK G ++ A+
Sbjct: 98  CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAV 157

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +       DV TY+I+I G     +      L  +M +    PN IT+ TL+   
Sbjct: 158 VLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSL 217

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +      L   M  ++  P     ++++D+  K
Sbjct: 218 VKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 254



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 110/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK   ++ A+ L+++ML     PDV  +N L  G  +  + +   KL  EM + G
Sbjct: 143 LINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG 202

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +D L K+G  +++  L + +    C+     ++ +ID  CK G+L++A 
Sbjct: 203 CEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAY 262

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +     + D+ TY+IMI G     ++D A  L   M E    P+V+T+ +++ G 
Sbjct: 263 ELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 322

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + ++  +  E+   ++      D    S ++D L K+ 
Sbjct: 323 CKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSR 361



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 1/186 (0%)

Query: 35  NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           N L        + + A+ LF        + D+ TY+  I+G CK     ++  L   +  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
                    Y+ +I GLC +GR++ AL  +  + R      V+TY+I++  L    ++  
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHC-APSVITYTILVDALCKSARISD 120

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A  +  DM E   APNV+T+ TLI+GF ++    + + L ++M E +  PD    +I++D
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 215 LLAKNE 220
              K E
Sbjct: 181 GYCKQE 186


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 122/215 (56%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQR 59
           IL+   C+N  +  A  ++ EM S+G+ PD+V  + L IGL   +  +++A K F +M+ 
Sbjct: 468 ILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL-IGLLSKNGCLDQALKYFRDMKN 526

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+A D   YTI I G C+NG + E++++   +    C LD+  Y+ +++GLCK   L  
Sbjct: 527 AGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSE 586

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +    +  D  T++ +I+G   DG M+KA  LF  M +  + P+V+T+ TLI 
Sbjct: 587 ADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 646

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           GF + +E  KV EL + M  + + P+     I+++
Sbjct: 647 GFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN 681



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+N  +  AL +  EML +G   DVV +NT+  GL +   +  A +LF EM   
Sbjct: 538 ILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTER 597

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I+G  K+G + ++V LF  +     + D+  Y+ LIDG CK   +E  
Sbjct: 598 GVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 657

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL++ +    +  + ++Y I+I+G  N G + +A  L+ +M E      +IT  T++ G
Sbjct: 658 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 717

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + R     K  E L  M  K ++PD    + +++   K E
Sbjct: 718 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 757



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  +   A  +  EML  G+ PD   +N L +       +  A ++FDEM   G
Sbjct: 434 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 493

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  I  L KNG + ++++ FR ++      D   Y+ LI G C++G +  AL
Sbjct: 494 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 553

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +       DVVTY+ +++GL  +  + +A +LF +M E  V P+  TF TLI+G+
Sbjct: 554 KVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 613

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +K + L   M ++N+ PD    + ++D   K
Sbjct: 614 XKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 650



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 5/233 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY K+  +  A+ L+  M+ + +KPDVV +NTL  G  +  ++E+  +L+++M    
Sbjct: 609 LINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 668

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y I I+G C  G + E+  L+  +     E  I   + ++ G C++G    A 
Sbjct: 669 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 728

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E   ++    +V D +TY+ +I+G   +  MD+A  L   ME + + P+VIT+  +++GF
Sbjct: 729 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 788

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP-SFTVHE 233
            R     +   ++ KM E+ V PD S  + +++      ++ N+L  +F VH+
Sbjct: 789 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLIN----GHVTQNNLKEAFRVHD 837



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 114/221 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CKN++IE   +  S+M  KG+ PDVV +NTL         +E AF+L D M   
Sbjct: 363 IMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK 422

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I+GLCK G  + +  +   +  +    D   Y+ L+   C++  +  A
Sbjct: 423 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDA 482

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +P   +V D+V++S +I  L  +G +D+A   F DM+   +AP+ + +  LI G
Sbjct: 483 ERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 542

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F R    S+ +++  +M E+    D    + +++ L K ++
Sbjct: 543 FCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKM 583



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 2/209 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI    KN  ++ AL  + +M + G+ PD VI+  L  G      +  A K+ DEM   G
Sbjct: 504 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK   + E+ ELF  +       D   ++ LI+G  K G +  A+
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAV 623

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  L  DVVTY+ +I G     +M+K ++L+ DM    + PN I++G LI+G+
Sbjct: 624 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 683

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
             +   S+   L  +M EK    +A+I++
Sbjct: 684 CNMGCVSEAFRLWDEMVEKGF--EATIIT 710



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  E+E    L+++M+S+ I P+ + +  L  G   +  V  AF+L+DEM   G
Sbjct: 644 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 703

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A   T    + G C+ G  V++ E    + +     D   Y+ LI+G  K   ++ A 
Sbjct: 704 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 763

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    L+ DV+TY+++++G    G+M +A  + L M E  V P+  T+ +LI+G 
Sbjct: 764 ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGH 823

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +  N   +   +  +M ++  +PD
Sbjct: 824 VTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y + +++      +  + SKG+   +   N+L  GL ++  V+ A++++ E+ R 
Sbjct: 293 LLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRS 352

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T  I I+ LCKN  I  +      +       D+  Y+ LI+  C+ G LE A
Sbjct: 353 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 412

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL  S+    L   V TY+ +I+GL   G+  +A  +  +M +  ++P+  T+  L+  
Sbjct: 413 FELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 472

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R +       +  +M  + V+PD    S ++ LL+KN
Sbjct: 473 CCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 511



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K   ++ A  +Y E++  G++ +V   N +   L +  ++E       +M+  G
Sbjct: 329 LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 388

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I+  C+ G + E+ EL  ++     +  +  Y+ +I+GLCK+G+   A 
Sbjct: 389 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 448

Query: 122 ELFHSLPRGVLVADVVTYSI-MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +   + +  +  D  TY+I ++    ND  MD A  +F +M    V P++++F  LI  
Sbjct: 449 GVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGL 507

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             +     + ++    MK   + PD  I +I++    +N +
Sbjct: 508 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 548



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query: 83  VESVELFRTLRIL--KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
           V  VE+  +L +    C  +   +  L+    ++ +L    E F  L    L   +   +
Sbjct: 268 VSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACN 327

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            ++ GL   G +D A +++ ++  + V  NV T   +I+   +  +       L  M+EK
Sbjct: 328 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 387

Query: 201 NVMPDASIVSIVVDLLAK 218
            V PD    + +++   +
Sbjct: 388 GVFPDVVTYNTLINAYCR 405



 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 37/67 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG+ +   ++ A  +  +M+ +G+ PD   + +L  G    + ++ AF++ DEM + 
Sbjct: 783 VILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 842

Query: 61  GVAADTR 67
           G   D +
Sbjct: 843 GFVPDDK 849


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 119/213 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK++ +E AL +Y EM  K + PDVV +  +  GL +  +VE A  +F EM+  G
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG 152

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   ID L K G + E+  L   + +     D+  Y+ L+DGL K+G    A 
Sbjct: 153 VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAE 212

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L    LV + VTYS +I G    G ++K   L  +MEE  + PNVI + +++ G+
Sbjct: 213 DMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGY 272

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +    ++ ++++ KM ++N++P+  +   ++D
Sbjct: 273 TKKGLLNEAMDVMRKMVQRNILPNVFVYGTLID 305



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+N EI  A+ L   M ++G  PD+V +NTL  G  +I  +  A KL  E+   
Sbjct: 22  VLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLV 81

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TYT  ID  CK+  + +++ ++  + +     D+  Y+C+++GLCKSG++E A
Sbjct: 82  NLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEA 141

Query: 121 LELFHSLP------------------------------RGVLVA-----DVVTYSIMIHG 145
             +F  +                               +G +V      DVV Y+ ++ G
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDG 201

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L+  G  + A D+F  + E ++ PN +T+  LI G  ++ + +K   LL +M+EK++ P+
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 206 ASIVSIVVDLLAK 218
             + S +VD   K
Sbjct: 262 VIVYSSIVDGYTK 274



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 13/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK+ ++E A +++ EM   G+ P+   + TL   LF+   V  AF L   M   G
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  +DGL K G    + ++F+ L       +   YS LIDG CK G +    
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGE 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +V+ YS ++ G    G +++A D+   M +  + PNV  +GTLI G+
Sbjct: 248 LLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
            + ++    ++L  +MK + +  +  ++   V+ L ++              R EE DE
Sbjct: 308 FKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRS-------------GRMEEADE 353



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 107/205 (52%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I+  V   N L  G     ++ RA +L + M+ +G A D  TY   ++G CK G +  + 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +L   + ++  E ++  Y+ LID  CKS  LE AL ++  +    LV DVVTY+ +++GL
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++++A  +F +MEE  V PN  ++ TLI    +    ++   L  +M  + +  D 
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTV 231
            + + ++D L K  ++ N+   F V
Sbjct: 193 VVYTALMDGLFKAGMANNAEDMFQV 217



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY K   +  A+++  +M+ + I P+V ++ TL  G F+  Q   A  LF EM+  G
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +      F++ L ++G + E+ ELF+ +       D   Y+ ++DG  K+G+   A 
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAF 387

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       DVV Y+++I+GL+  G+ + +      M +  +AP+  TF T+I+ +
Sbjct: 388 NIAQEMTEKSSGFDVVAYNVLINGLFKLGKYE-SESFHTGMRQLGLAPDSATFNTMINAY 446

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
            +       ++LL++MK   + P++   +I+V  L A  EI
Sbjct: 447 CKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEI 487



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C   EIE  ++L ++ML  G  P    H  +     +  + +    + D++   
Sbjct: 476 ILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGM 535

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   I   C+ G I  +  +F+ +       DI  Y+ LI G C S  L+ A
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  +V TY+I++ GL     + +A  L   M+E  + PN  T+  L+ G
Sbjct: 596 FAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSG 655

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +I    + ++L  +M  K  +P     ++++   AK +
Sbjct: 656 HGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGK 695



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 104/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K++  +  L+++ +++  G+K D+  +NTL      +  + RA  +F +M   G
Sbjct: 512 VLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I G C + ++ ++  +   +       +++ Y+ L+ GL  +  ++ A 
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA 631

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    LV +  TY I++ G    G M +   L+ +M      P   T+  LI  F
Sbjct: 632 GLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCF 691

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  + S+  EL+ +M+ + + P++S   I++
Sbjct: 692 AKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 12/229 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +C+   I  A  ++ +M+ KGI  D++ +N L  G      +++AF +  +M  +G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL     I E+  L   ++      +   Y  L+ G  K G ++  +
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +     V    TY+++I       +M +A +L  +M+   + PN  T+  LI G+
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGW 726

Query: 182 IRINE------------PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++++             ++   L  +M EK  +P  + ++ +   LAK
Sbjct: 727 YKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAK 775



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K      A +++  +L + + P+ V ++ L  G  ++  V +   L  EM+   
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  +DG  K G + E++++ R +       ++  Y  LIDG  K+ +  IAL
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIAL 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    L  +       ++ L   G+M++A +LF DM    + P+ + + +++ GF
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + S    +  +M EK+   D    +++++ L K
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K   +  A  L   M+ +GI  DVV++  L  GLF+      A  +F  +  + 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  IDG CK G + +   L + +       ++  YS ++DG  K G L  A+
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  ++ +V  Y  +I G +   Q   A DLF +M+   +  N     + ++  
Sbjct: 283 DVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNL 342

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     +  EL   M  + ++PD
Sbjct: 343 KRSGRMEEADELFKDMMSRGLLPD 366



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++     L  EM  K I P+V++++++  G  +   +  A  +  +M +  
Sbjct: 233 LIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   IDG  K      +++LF+ ++    E +       ++ L +SGR+E A 
Sbjct: 293 ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEAD 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    L+ D V Y+ M+ G +  G+   A ++  +M E +   +V+ +  LI+G 
Sbjct: 353 ELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGL 412

Query: 182 IRINEPSKVIELLHK-MKEKNVMPDASIVSIVVDLLAK 218
            ++ +     E  H  M++  + PD++  + +++   K
Sbjct: 413 FKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCK 448



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 1/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K  + E   + ++ M   G+ PD    NT+     +   +  A KL +EM+  
Sbjct: 407 VLINGLFKLGKYESE-SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSY 465

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++ T  I +  LC  G I ++++L   + ++        +  ++D   KS R ++ 
Sbjct: 466 GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVI 525

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   L    +  D+ TY+ +I      G + +A  +F DM    +  ++IT+  LIHG
Sbjct: 526 LHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHG 585

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +   +   K   +  +M  + V P+    +I++  L+
Sbjct: 586 YCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G    + I+ A  L ++M  +G+ P+   ++ L  G  +I  ++   KL+ EM   
Sbjct: 616 ILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITK 675

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    TRTY + I    K   + ++ EL + +++     +   Y  LI   C   +L   
Sbjct: 676 GFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI---CGWYKLSKQ 732

Query: 121 LELFHSLPR 129
            EL  SL R
Sbjct: 733 PELNKSLKR 741


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 114/195 (58%), Gaps = 3/195 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK   ++ A N+ + M+ +GIKP VV +N+L  G F + QV +A  +F+ M + 
Sbjct: 182 ILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQL 241

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D ++Y+I I+G CK   + E++EL + +   +   ++  YS LIDGLCKSG++  A
Sbjct: 242 GVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYA 301

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +       ++VTYS ++  L  + Q+D A  L   M+   + PN+ T+  LI G
Sbjct: 302 LKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKG 361

Query: 181 FI---RINEPSKVIE 192
                ++ +  KV E
Sbjct: 362 LCQSGKLEDARKVFE 376



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 118/217 (54%), Gaps = 3/217 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK K ++ A+ L  EM  K I P+VV +++L  GL +  ++  A KL DEM   
Sbjct: 252 ILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDR 311

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY+  +D LCKN  +  ++ L   ++    + ++  Y+ LI GLC+SG+LE A
Sbjct: 312 GQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDA 371

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       +V TY++MI G  + G  D+A  L   ME+N   PN  T+  +I  
Sbjct: 372 RKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILS 431

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             + +E     +LL +M E N   D   V++  DL+A
Sbjct: 432 LFKKDENEMAEKLLCEMIETNF--DGR-VALTNDLIA 465



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 129/245 (52%), Gaps = 10/245 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF---EIH-------QVERA 50
           ILIN +C+   I  A ++ +++L  G KP+ +  NTL  GL    +IH       +++ A
Sbjct: 102 ILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDA 161

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
             LF++M  + +  D  T+TI +DG CK G + E+  +   + I   +  +  Y+ L+DG
Sbjct: 162 VDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDG 221

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
                ++  A  +F+++ +  +  D+ +YSI+I+G      MD+A +L  +M    + PN
Sbjct: 222 YFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPN 281

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           V+T+ +LI G  +  + S  ++L+ +M ++   P+    S ++D L KN    N++   T
Sbjct: 282 VVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLT 341

Query: 231 VHERQ 235
             + Q
Sbjct: 342 QMKNQ 346



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K     L L  +M  +GIKP++V  N L     ++  +  AF +  ++ + G   +T 
Sbjct: 74  KSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTI 133

Query: 68  TYTIFIDGLCKNGYI----------VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           T    I GLC NG I           ++V+LF  + +     D+  ++ L+DG CK GR+
Sbjct: 134 TLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRV 193

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  +   +    +   VVTY+ ++ G +   Q++KA  +F  M +  V+P++ ++  L
Sbjct: 194 KEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSIL 253

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I+GF +I    + +ELL +M  K ++P+    S ++D L K+
Sbjct: 254 INGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKS 295



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           N +++ A++L++ +L +   P  +  N +   L +         L  +M+  G+  +   
Sbjct: 40  NNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 99

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS----------GRLE 118
             I I+  C+ G+I  +  +   +  +  + +    + LI GLC +          G+L+
Sbjct: 100 CNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLK 159

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A++LF+ +    +  DV T++I++ G   +G++ +A ++   M    + P V+T+ +L+
Sbjct: 160 DAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLM 219

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G+  + + +K   + + M +  V PD    SI+++   K
Sbjct: 220 DGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCK 259


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 123/220 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK K +  A +LYS+M++K I PDV  +N L  G   + ++  A  LF++M+++
Sbjct: 206 MIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKE 265

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+ I +DG CK G + ++  +   +     + D+  Y+ L+DG C   ++  A
Sbjct: 266 NINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKA 325

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F S+  G ++A+V  Y+ M++G      +D+A +LF +M    + PNV+T+ +LI G
Sbjct: 326 KDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDG 385

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             ++      ++L+ +M ++   P+    S ++D L KN 
Sbjct: 386 LCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 425



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 108/196 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+CK K ++ A+NL+ EM  + I P+VV +++L  GL ++ ++  A KL DEM   G
Sbjct: 347 MVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  +D LCKN ++ +++ L   L+      D+  Y+ LI GLC+SGRLE A 
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L       DV  Y++MI G  + G  DKA  L   ME+N   PN  T+  +I   
Sbjct: 467 NVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSL 526

Query: 182 IRINEPSKVIELLHKM 197
              +E     +LL +M
Sbjct: 527 FEKDENDTAEKLLREM 542



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 36/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK  ++  A  + + M+   IKPDVV +N+L  G   I++V +A  +FD M   
Sbjct: 276 ILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASG 335

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+ + YT  ++G CK   + E++ LF  +R  K   ++  YS LIDGLCK GR+  A
Sbjct: 336 GVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYA 395

Query: 121 LELF-------------------------HSLPRGVLV----------ADVVTYSIMIHG 145
           L+L                          H + + + +           D+ TY+I+I G
Sbjct: 396 LKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKG 455

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+++ A ++F D+       +V  +  +I GF       K + LL KM++   +P+
Sbjct: 456 LCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPN 515

Query: 206 ASIVSIVV-DLLAKNE 220
           A    +V+  L  K+E
Sbjct: 516 AKTYELVILSLFEKDE 531



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   I  AL L   +  K ++P+ V++N +   + +   V  AF L+ +M    
Sbjct: 172 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 231

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G      +  +++LF  ++      ++  ++ L+DG CK G++  A 
Sbjct: 232 ICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAK 291

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DVVTY+ ++ G  +  +++KA D+F  M    V  NV  + T+++GF
Sbjct: 292 VVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGF 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I    + I L  +M+ + ++P+    S ++D L K
Sbjct: 352 CKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCK 388



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K K    AL+L+ +M   GI+ D    N L     ++     +F +F ++ + G
Sbjct: 67  ILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKG 126

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   I GLC  G+I +++     +      LD  +Y  LI+GLCK GR+  AL
Sbjct: 127 YHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAAL 186

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +   ++  + V Y+++I  +     ++ A DL+  M    + P+V T+  LI GF
Sbjct: 187 QLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGF 246

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +++ +  I+L +KMK++N+ P+    +I+VD   K
Sbjct: 247 SAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCK 283



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C    I  AL+ + +++++G   D V + TL  GL ++ ++  A +L   +    
Sbjct: 137 LIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKL 196

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y + ID +CK   + ++ +L+  +   +   D+  Y+ LI G     +L  A+
Sbjct: 197 VQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAI 256

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ + +  +  +V T++I++ G   +G+++ A  +   M ++ + P+V+T+ +L+ G+
Sbjct: 257 DLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGY 316

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             IN+ +K  ++   M    V+ +  I + +V+   K
Sbjct: 317 CSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCK 353



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN + +      + ++++++L KG  P  +  NTL  GL     + +A    D++   
Sbjct: 101 ILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQ 160

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G I  +++L + +     + +   Y+ +ID +CK+  +  A
Sbjct: 161 GFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDA 220

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  DV TY+ +I G     +++ A DLF  M++  + PNV TF  L+ G
Sbjct: 221 FDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDG 280

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  + +    +L  M + ++ PD    + ++D
Sbjct: 281 FCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMD 314



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 39/202 (19%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           +L K   P     N +   L +      A  L  +M+ +G+ +D  T+ I I+   + G 
Sbjct: 52  LLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGL 111

Query: 82  IVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
              S  +F   +ILK      A  ++ LI GLC  G +  AL  FH              
Sbjct: 112 NSLSFSIFA--KILKKGYHPTAITFNTLIKGLCLKGHIHQALH-FHD------------- 155

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
            ++  G + D                      +++GTLI+G  ++   +  ++LL ++  
Sbjct: 156 KVVAQGFHLDQ---------------------VSYGTLINGLCKVGRITAALQLLKRVDG 194

Query: 200 KNVMPDASIVSIVVDLLAKNEI 221
           K V P+A + ++++D + K ++
Sbjct: 195 KLVQPNAVMYNMIIDNMCKAKL 216


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 115/204 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K   ++  + ++ +M      PDV+ +N L     +  ++ +AF+   EM+ +G
Sbjct: 296 LIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+ FID  CK G + E+++ F  +R +    +   Y+ LID  CK+G L  AL
Sbjct: 356 LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEAL 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +VVTY+ ++ GL  +G+M +A ++F  M    VAPN  T+  L+HGF
Sbjct: 416 KLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           I+  E     ++L +MKEK + PD
Sbjct: 476 IKAKEMEYAKDILKEMKEKCIKPD 499



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 123/225 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK + +  A     EM + G+KP+VV ++T      +   ++ A K F +M+R  
Sbjct: 331 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID  CK G + E+++L   +     +L++  Y+ L+DGLC+ GR++ A 
Sbjct: 391 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 450

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F ++    +  +  TY+ ++HG     +M+ A D+  +M+E  + P+++ +GT++ G 
Sbjct: 451 EVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGL 510

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
              +   +   L+ ++KE  +  +A I + ++D   K+  +  +L
Sbjct: 511 CNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 555



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 101/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    +E A  L  E+   GI  + VI+ TL    F+  Q   A  L +EM   G
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A   TY   IDGLCK+G + E++  F  +  +  + ++  Y+ L+DGLCK+   E+A 
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    ++ D + Y+ +I G    G + +A +L   M E  +  ++  +  LI G 
Sbjct: 626 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGL 685

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  K   LL +M  K V+PD
Sbjct: 686 SHSGQVQKARNLLDEMIGKGVLPD 709



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 101/198 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K KE+E A ++  EM  K IKPD++++ T+  GL    ++E A  L  E++  G
Sbjct: 471 LVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 530

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  +D   K+G   E++ L   +  L        Y  LIDGLCKSG ++ A+
Sbjct: 531 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L  +V  Y+ ++ GL  +   + A  LF +M +  + P+ I +  LI G 
Sbjct: 591 HHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGN 650

Query: 182 IRINEPSKVIELLHKMKE 199
           ++     + + L  +M E
Sbjct: 651 MKHGNLQEALNLRDRMIE 668



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 98/202 (48%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
             + +M + GIK  V  +N +   L +   +E A  LF +M+  G   D  TY   IDG 
Sbjct: 241 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
            K G + E + +F  ++   C+ D+  Y+ LI+  CK  R+  A E  H +    L  +V
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNV 360

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VTYS  I     +G + +A   F+DM   A+ PN  T+ +LI    +    ++ ++L+ +
Sbjct: 361 VTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEE 420

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           + +  +  +    + ++D L +
Sbjct: 421 ILQAGIKLNVVTYTALLDGLCE 442



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 115/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+ +CK   ++ A+  + +M    + P+   + +L     +   +  A KL +E+ + G
Sbjct: 366 FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  +DGLC+ G + E+ E+FR +       + + Y+ L+ G  K+  +E A 
Sbjct: 426 IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAK 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +  D++ Y  ++ GL N+ ++++A  L  +++E+ +  N + + TL+  +
Sbjct: 486 DILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAY 545

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +  + ++ + LL +M +  ++        ++D L K+ +   ++  F
Sbjct: 546 FKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHF 593



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 95/206 (46%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P   + + LF  L E+  +E A + F +M++  V    R+    +  L K G    S + 
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKF 242

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F+ +     +  +  Y+ +ID LCK G LE+A  LF  +       D+VTY+ +I G   
Sbjct: 243 FKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGK 302

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G +D+   +F  M++    P+VIT+  LI+ F +     K  E LH+MK   + P+   
Sbjct: 303 LGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVT 362

Query: 209 VSIVVDLLAKNEISLNSLPSFTVHER 234
            S  +D   K  +   ++  F    R
Sbjct: 363 YSTFIDAFCKEGMLQEAIKFFVDMRR 388



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 104/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  AL L  E+L  GIK +VV +  L  GL E  +++ A ++F  M   G
Sbjct: 401 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  TYT  + G  K   +  + ++ + ++    + D+  Y  ++ GLC   RLE A 
Sbjct: 461 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  + V Y+ ++   +  GQ  +A  L  +M +  +    +T+  LI G 
Sbjct: 521 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGL 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + +    +M E  + P+ ++ + +VD L KN
Sbjct: 581 CKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKN 618



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 92/166 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+  ++ A++ +  M   G++P+V ++  L  GL + +  E A KLFDEM   G
Sbjct: 576 LIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKG 635

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  IDG  K+G + E++ L   +  +  ELD+ AY+ LI GL  SG+++ A 
Sbjct: 636 MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKAR 695

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
            L   +    ++ D V Y  +I   Y  G++D+A +L  +M +  +
Sbjct: 696 NLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 100/206 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ Y K+ +   AL L  EML  G+    V +  L  GL +   V+ A   F  M   G
Sbjct: 541 LMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIG 600

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  +DGLCKN     + +LF  +       D  AY+ LIDG  K G L+ AL
Sbjct: 601 LQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEAL 660

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  D+  Y+ +I GL + GQ+ KA +L  +M    V P+ + +  LI  +
Sbjct: 661 NLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKY 720

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
             + +  + +EL ++M ++ ++   S
Sbjct: 721 YALGKVDEALELQNEMAKRGMITGLS 746



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 98/213 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C+   ++ A  ++  ML+ G+ P+   +  L  G  +  ++E A  +  EM+   
Sbjct: 436 LLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC 495

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   + GLC    + E+  L   ++      +   Y+ L+D   KSG+   AL
Sbjct: 496 IKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 555

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L+A  VTY  +I GL   G + +A   F  M E  + PNV  +  L+ G 
Sbjct: 556 TLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGL 615

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + N      +L  +M +K +MPD    + ++D
Sbjct: 616 CKNNCFEVAKKLFDEMLDKGMMPDKIAYTALID 648



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A   + +M    + P     N L   L ++ + + + K F +M   G+     TY I
Sbjct: 201 LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 260

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            ID LCK G +  +  LF  ++      DI  Y+ LIDG  K G L+  + +F  +    
Sbjct: 261 MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 320

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+      +M KA +   +M+ N + PNV+T+ T I  F +     + I
Sbjct: 321 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 380

Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
           +    M+   + P+    + ++D
Sbjct: 381 KFFVDMRRVALTPNEFTYTSLID 403



 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)

Query: 82  IVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           ++ S ++F  L   +  C      +  L   L + G LE A E F  + +  +     + 
Sbjct: 164 VLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSC 223

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           + ++H L   G+ D +   F DM    +  +V T+  +I    +  +      L  +MKE
Sbjct: 224 NALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKE 283

Query: 200 KNVMPDASIVSIVVD 214
               PD    + ++D
Sbjct: 284 AGFTPDIVTYNSLID 298


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 118/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K    + AL +Y  M   G++PD    N L     +  +V+  +KLF+EMQ   
Sbjct: 95  LIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQN 154

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY+I ID +CK G + +++++F  ++   C  +I  Y+ +IDGL KSG ++ A 
Sbjct: 155 CSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAF 214

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    LVA  V Y+ +IHGL   G+ D A  LF +M    + P+ +TF +L++G 
Sbjct: 215 FLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGL 274

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                 S+   +  + ++     D ++ ++++D L K++
Sbjct: 275 GVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSK 313



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K+  ++ A  L+ EM S+G+    V++N+L  GL    + + A KLF EM   G
Sbjct: 200 MIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKG 259

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  + GL   G   E+  +F+  R + C LD+  Y+ LID LCKS RL+ A 
Sbjct: 260 LQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAW 319

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L    LV DV T++ ++ GL   G++  A  L  DM+     P+V  + TLI G 
Sbjct: 320 EIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGL 379

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     +  +LL +M+     PD    + ++D
Sbjct: 380 RKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLID 412



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 7/185 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK+K ++ A  ++ E+   G+ PDV   N L  GL +  ++  AF L  +M+R 
Sbjct: 304 VLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRA 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   IDGL K+G + E+ +L   ++ L  E D+  Y+ LID  CK GR+E A
Sbjct: 364 GCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDA 423

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV----APNVITFG 175
           L LF  +  +G   A+ VTY+ +++GL   G++D+A+ LF  M++  V     P+ +T+ 
Sbjct: 424 LRLFEEISAKG--FANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYT 481

Query: 176 TLIHG 180
           TL++G
Sbjct: 482 TLLNG 486



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N + K K ++    L+ EM ++   P+V+ ++ L   + +   VE+A K+F +M+  
Sbjct: 129 VLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSR 188

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYT  IDGL K+G++ ++  LF  +           Y+ LI GL +SGR + A
Sbjct: 189 GCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAA 248

Query: 121 LELFHSLPRGVLVADVVTYSIMIHG---------------------------LYN----- 148
            +LF  +    L  D VT++ +++G                           LYN     
Sbjct: 249 AKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDT 308

Query: 149 ---DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                ++D+A ++F ++EE+ + P+V TF  L+ G  +         LL  MK     PD
Sbjct: 309 LCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPD 368

Query: 206 ASIVSIVVDLLAKN 219
            ++ + ++D L K+
Sbjct: 369 VTVYNTLIDGLRKS 382



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 38/264 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
           LI+G  ++   + A  L+ EMLSKG++PD V   +L  GL                    
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVG 294

Query: 42  ---------------FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                           +  +++ A+++F E++ DG+  D  T+   +DGLCK+G I ++ 
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAF 354

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++   C  D+  Y+ LIDGL KSGR+E A +L   +       DVVTY+ +I   
Sbjct: 355 ILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDES 414

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV--MP 204
              G+++ A  LF ++     A N +T+ T+++G        +  +L + MK++ V  + 
Sbjct: 415 CKGGRIEDALRLFEEISAKGFA-NTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVI 473

Query: 205 DASIVSIVVDLLAKNEISLNSLPS 228
           D   V+    L    +  L+ L +
Sbjct: 474 DPDFVTYTTLLNGARQAGLSELAN 497



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 5/161 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK+  I  A  L  +M   G  PDV ++NTL  GL +  +VE A +L  EMQ  G
Sbjct: 340 LMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLG 399

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID  CK G I +++ LF  +   K   +   Y+ +++GLC +GR++ A 
Sbjct: 400 YEPDVVTYNTLIDESCKGGRIEDALRLFEEISA-KGFANTVTYNTILNGLCMAGRVDEAY 458

Query: 122 ELFHSLPR----GVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           +LF+ + +    GV+  D VTY+ +++G    G  + A+ L
Sbjct: 459 KLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 1/215 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L  GY     +E ++     M           +N+L     +    ++A  ++  M + G
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSG 119

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT T+ + ++   K   +    +LF  ++   C  ++  YS LID +CK G +E AL
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       ++ TY+ MI GL   G +DKA  LF +M    +    + + +LIHG 
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDL 215
            R        +L  +M  K + PD  +  S+V  L
Sbjct: 240 GRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGL 274



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)

Query: 71  IFID---GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           IFI+   G    G + +SVE  + +   +C L   AY+ LID   K+G  + AL ++  +
Sbjct: 56  IFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVM 115

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +  L  D  T++++++      ++D    LF +M+    +PNVIT+  LI    +    
Sbjct: 116 GQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGV 175

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            K +++   MK +   P+    + ++D L K+
Sbjct: 176 EKALKVFLDMKSRGCRPNIFTYTSMIDGLGKS 207



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 88/193 (45%), Gaps = 2/193 (1%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           ++P + I   L  G      +E++ +    M+    A     Y   ID   K GY  +++
Sbjct: 52  LQPRIFIE--LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKAL 109

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++R +       D   ++ L++   K+ R++   +LF  +       +V+TYSI+I  +
Sbjct: 110 AVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAV 169

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G ++KA  +FLDM+     PN+ T+ ++I G  +     K   L  +M  + ++   
Sbjct: 170 CKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATR 229

Query: 207 SIVSIVVDLLAKN 219
            + + ++  L ++
Sbjct: 230 VVYNSLIHGLGRS 242


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK   +  A  LY E+L   + P+VV+  TL  G  +  ++  A  LF  M + G
Sbjct: 309 MIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFG 368

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   I G CK+G ++E++ L   +  L    D+  Y+ LI+GLC   RL  A 
Sbjct: 369 VDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEAN 428

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +    VTY+ +IHG   +  ++KA DL  +M  + V PN+ITF TLI G+
Sbjct: 429 RLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGY 488

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++      + L  +M  K ++PD    + ++D
Sbjct: 489 CKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLID 521



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 112/219 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG  + +  +     Y  M+S+G+ PDV I++ LF   F+     +  KL DEM   G
Sbjct: 204 ILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLG 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   YTI+I  LC+   + E+ ++F  ++I     ++  YS +IDG CK+G L  A 
Sbjct: 264 VKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAY 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    L+ +VV +  ++ G     ++  A  LF+ M +  V PN+  +  LIHG 
Sbjct: 324 GLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQ 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + LL +M+  N+ PD    +I+++ L   E
Sbjct: 384 CKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEE 422



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK +E+  A +L+  M+  G+ P++ ++N L  G  +   +  A  L  EM+   
Sbjct: 344 LVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLN 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TYTI I+GLC    + E+  LF+ ++  +       Y+ LI G CK   +E AL
Sbjct: 404 LSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKAL 463

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  +++T+S +I G      +  A  L+ +M    + P+V+T+ TLI   
Sbjct: 464 DLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAH 523

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +     + + L   M E  + P+    + +VD   K E  L+    F +   Q    +S
Sbjct: 524 FKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWK-EGRLSDAIDFYLENNQAATGKS 582

Query: 242 NVK 244
            V+
Sbjct: 583 IVQ 585



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   IE AL+L SEM S G++P+++  +TL  G  ++  ++ A  L+ EM   G
Sbjct: 449 LIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKG 508

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID   K   + E++ L+  +       +   ++CL+DG  K GRL  A+
Sbjct: 509 IVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAI 568

Query: 122 ELFHSLPRGVLVADVVT--------YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           + +    +      +V         ++ +I GL  +G + +A   F DM+   V P++ +
Sbjct: 569 DFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWS 628

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +++   +R    +  + L   M +  ++P+  +  ++     +N
Sbjct: 629 YVSMLKAHLREKRITDTMMLHCDMIKTGILPNLMVNQLLAMFYQEN 674



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 39/238 (16%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L  EM S G+KP+V I+      L   +++E A K+F+ M+  GV  +  TY+  IDG C
Sbjct: 255 LLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYC 314

Query: 78  KNGYIVESVELFRTLRILKCEL-------------------------------------D 100
           K G + ++  L++   IL  EL                                     +
Sbjct: 315 KTGNLRQAYGLYK--EILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPN 372

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           +  Y+CLI G CKSG +  A+ L   +    L  DV TY+I+I+GL  + ++ +A+ LF 
Sbjct: 373 LYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQ 432

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            M+   + P+ +T+ +LIHGF +     K ++L  +M    V P+    S ++D   K
Sbjct: 433 RMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCK 490



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 9/231 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C  + +  A  L+  M ++ I P  V +N+L  G  + + +E+A  L  EM   
Sbjct: 413 ILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSS 472

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T++  IDG CK   I  ++ L+  + I     D+  Y+ LID   K   ++ A
Sbjct: 473 GVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEA 532

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT------- 173
           L L+  +    +  +  T++ ++ G + +G++  A D +L+  + A   +++        
Sbjct: 533 LRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYV 592

Query: 174 -FGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEIS 222
            F  LI G  +     +       MK   V PD  S VS++   L +  I+
Sbjct: 593 GFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRIT 643


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK ++I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 129 ILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHAS 188

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 189 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 248

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+ IT+  LI G
Sbjct: 249 LEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDG 308

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 309 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 353



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 224

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 225 LVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 284

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 285 DLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 344

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PDA   +++++   K 
Sbjct: 345 CQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 382



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 86/158 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ AL +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 235 LIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 295 LKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 354

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++   +    L  D  TY+++I+     G + K   L 
Sbjct: 355 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 392



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 100/194 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 199 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQ 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 259 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTA 318

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 319 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINE 378

Query: 181 FIRINEPSKVIELL 194
           F +  +  K  +LL
Sbjct: 379 FCKKGDVWKGSKLL 392



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 80/165 (48%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK   I  +  +F  +        
Sbjct: 99  LMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPS 158

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 219 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPD 263



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 59/116 (50%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+   CK   + +A  +F ++ +  L   VV+Y+ +++G    G +D+   L   M 
Sbjct: 127 FNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH 186

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + ++D   KN
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN 242



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A      M+ + I+ D V +  L  GL +  +   A K+  EM   G
Sbjct: 305 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 364

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFR 90
           +  D RTYT+ I+  CK G + +  +L +
Sbjct: 365 LKPDARTYTMIINEFCKKGDVWKGSKLLK 393



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/155 (18%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 52  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 111

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +  +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 112 YKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 171

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 172 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 206


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 118/212 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+   I  AL ++  M+  G +P+VVI+NT+  GL +  QV+ A  L + M+ DG
Sbjct: 157 LLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDG 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I GLC +G   ++  +   +   +   D+  ++ LID   K GR+  A 
Sbjct: 217 IRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAE 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  + R  L  D+VTYS++I+GL    ++D+A  +F  M      P+V+T+  LI+G+
Sbjct: 277 ELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGY 336

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +    ++L  +M ++ V+ +    ++++
Sbjct: 337 CKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLI 368



 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 114/209 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C    ++ A  ++  M+SKG  PDVV ++ L  G  +  +VE   KLF EM + 
Sbjct: 296 LLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +T TYT+ I G C+ G +  + E+F+ +       +I  Y+ L+ GLC +G++E A
Sbjct: 356 GVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKA 415

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   + +  + AD+VTY+I+I G+   G++  A DL+  +    + P++ T+  ++ G
Sbjct: 416 LVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLG 475

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV 209
             +     +   L  KMKE  ++P+   V
Sbjct: 476 LYKKGLRGEADALFRKMKEDGILPNECYV 504



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF------------------E 43
           +I+G CK+K+++ AL+L + M   GI+PD V +N+L  GL                   E
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKRE 251

Query: 44  IH-----------------QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I+                 ++  A +L++EM R  +  D  TY++ I GLC    + E+ 
Sbjct: 252 IYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +    C  D+  YS LI+G CKS ++E  ++LF  + +  +V + VTY+++I G 
Sbjct: 312 QMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGY 371

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+++ A ++F  M    V PN+IT+  L+HG     +  K + +L  M++  +  D 
Sbjct: 372 CRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADI 431

Query: 207 SIVSIVVDLLAK 218
              +I++  + K
Sbjct: 432 VTYNIIIRGMCK 443



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 111/220 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +C+  ++  AL+   +M+  G +PD+V   +L  G     ++  A  +FD M   
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   IDGLCK+  +  +++L   + +     D   Y+ LI GLC SGR + A
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  +  DV T++ +I     +G++ +A +L+ +M   ++ P+++T+  LI+G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               +   +  ++   M  K   PD    SI+++   K++
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSK 340



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 106/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K K+ +  + L+ +M   GI  ++   N L        Q+  A     +M + G
Sbjct: 87  LLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLG 146

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   ++G C+   I +++ +F  +  +  E ++  Y+ +IDGLCKS +++ AL
Sbjct: 147 HEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNAL 206

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +  D VTY+ +I GL N G+ D A  +   M +  + P+V TF  LI   
Sbjct: 207 DLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDAC 266

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           ++    S+  EL  +M  +++ PD    S+++
Sbjct: 267 VKEGRISEAEELYEEMIRRSLDPDIVTYSLLI 298



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 97/208 (46%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ +L+L+  M+     P +   + L   + ++ + +    L+++MQ  G+  +  T  
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I ++  C+   +  ++     +  L  E DI  +  L++G C+  R+  AL +F  +   
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               +VV Y+ +I GL    Q+D A DL   ME + + P+ +T+ +LI G          
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++  M ++ + PD    + ++D   K
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVK 268



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 70/143 (48%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           +S++LF  +   +    I  +S L+  + K  + ++ + L+  +    +  ++ T +I++
Sbjct: 64  DSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILL 123

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +      Q+  A      M +    P+++TFG+L++GF R +     + +  +M E    
Sbjct: 124 NCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYE 183

Query: 204 PDASIVSIVVDLLAKNEISLNSL 226
           P+  I + ++D L K++   N+L
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNAL 206


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 123/219 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + K    E    +Y EM+ +G  PD+++ N+    +F+  +VE+   LF+E++  G
Sbjct: 523 LIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQG 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D R+Y+I I GL K G+  E+ +LF  ++     LD+ AY+ +IDG CKSG+++ A 
Sbjct: 583 LVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAY 642

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L   VVTY  ++ GL    ++D+A+ LF + +   V  NV+ + +LI GF
Sbjct: 643 QLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGF 702

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   +L ++ +K + P++   + ++D L K E
Sbjct: 703 GKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAE 741



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 122/228 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK+ +++ A  L  EM +KG++P VV + ++  GL +I +++ A+ LF+E +  G
Sbjct: 628 VIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIG 687

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y+  IDG  K G I E+  +   L       +   ++CL+D L K+  ++ A 
Sbjct: 688 VDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQ 747

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F ++       + +TYSIMI+GL    + +KA   + +M++  + PN IT+ T+I G 
Sbjct: 748 VCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGL 807

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +     +   L  + K    +PD++  + +++ L+    ++++   F
Sbjct: 808 AKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVF 855



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  + +   I+ AL+L  EM S     D+V++N       ++ +V+ A+K F EM+  G
Sbjct: 244 LVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I  LCK   + E+VELF  L + +    + AY+ +I G   +G+ + A 
Sbjct: 304 LVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAY 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L     R   +  V+ Y+ ++  L   G++++A  +  +M ++A APN+ T+  LI   
Sbjct: 364 SLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA-APNLTTYNILIDML 422

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E    +++   MKE  + P+   V+I++D L K +
Sbjct: 423 CKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQ 461



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  +   ++ A +LY +ML     P+VV++ +L    F+  + E   K++ EM   G
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRG 547

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D      ++D + K G + +   LF  ++      D+++YS LI GL K+G      
Sbjct: 548 CSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETY 607

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    L  DV+ Y+ +I G    G++DKA+ L  +M+   + P V+T+G+++ G 
Sbjct: 608 KLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGL 667

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K   V  +  I S ++D   K
Sbjct: 668 AKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGK 704



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K         L+ EM  +G+  DV+ +NT+  G  +  +V++A++L +EM+  
Sbjct: 592 ILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTK 651

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   +DGL K   + E+  LF   + +  +L++  YS LIDG  K GR++ A
Sbjct: 652 GLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEA 711

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   L +  L  +  T++ ++  L    ++D+A   F +M+    +PN +T+  +I+G
Sbjct: 712 YLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMING 771

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              I + +K      +M+++ + P+    + ++  LAK
Sbjct: 772 LCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAK 809



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK  E+E AL +   M   G+ P+++  N +   L +  +++ A  +F  +   
Sbjct: 417 ILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHK 476

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL---------------------------- 92
             + D+RT+   IDGL + G + ++  L+  +                            
Sbjct: 477 VCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDG 536

Query: 93  -RILK------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +I K      C  D+   +  +D + K+G +E    LF  +    LV DV +YSI+IHG
Sbjct: 537 HKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHG 596

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G   + + LF +M+E  +  +V+ + T+I GF +  +  K  +LL +MK K + P 
Sbjct: 597 LVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPT 656

Query: 206 ASIVSIVVDLLAK 218
                 VVD LAK
Sbjct: 657 VVTYGSVVDGLAK 669



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 1   ILINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           +L+N Y  C  K  E+E    L+ E+ ++G+ PDV  ++ L  GL +       +KLF E
Sbjct: 553 MLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYE 612

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G+  D   Y   IDG CK+G + ++ +L   ++    +  +  Y  ++DGL K  R
Sbjct: 613 MKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDR 672

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L+ A  LF       +  +VV YS +I G    G++D+A+ +  ++ +  + PN  T+  
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNC 732

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           L+   ++  E  +       MK     P+A   SI+++ L
Sbjct: 733 LLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGL 772



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 112/230 (48%), Gaps = 3/230 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  ++E AL ++ EM  +   P++  +N L   L +  ++E A K+ D M+  G+  +  
Sbjct: 390 RKGKVEEALRIHDEM-RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIM 448

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I ID LCK   + E+  +F  L    C  D + +  LIDGL + GR++ A  L+  +
Sbjct: 449 TVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKM 508

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                + +VV Y+ +I   +  G+ +  H ++ +M     +P+++   + +    +  E 
Sbjct: 509 LDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEV 568

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            K   L  ++K + ++PD    SI++  L K   S  +   F  +E +E+
Sbjct: 569 EKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLF--YEMKEQ 616



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 109/242 (45%), Gaps = 11/242 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  + K+ +++ A  +   M     +P    + TL   L   ++ +    LF +MQ  G
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+   +T  +    + G I  ++ L   ++      D+  Y+  ID   K G++++A 
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH +    LV D VTY+ +I  L    ++D+A +LF +++ N   P V  + T+I G+
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-----------NEISLNSLPSFT 230
               +  +   LL + K K  +P     + ++  L +           +E+  ++ P+ T
Sbjct: 354 GSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLT 413

Query: 231 VH 232
            +
Sbjct: 414 TY 415



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L L+ +M   G + +V +  TL        +++ A  L DEM+ +   AD   Y + ID 
Sbjct: 223 LTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDC 282

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
             K G +  + + F  ++      D   Y+ LI  LCK+ RL+ A+ELF  L     V  
Sbjct: 283 FGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPC 342

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V  Y+ MI G  + G+ D+A+ L    +     P+VI +  ++    R  +  + + +  
Sbjct: 343 VYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHD 402

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +M++ +  P+ +  +I++D+L K
Sbjct: 403 EMRQ-DAAPNLTTYNILIDMLCK 424



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 34/247 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+ + K  +++ A   + EM ++G+ PD V + TL   L +  +++ A +LF+E+  +
Sbjct: 278 VCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLN 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC-------------- 106
                   Y   I G    G   E+  L    +   C   + AY+C              
Sbjct: 338 RSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEA 397

Query: 107 --------------------LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                               LID LCK+G LE AL++  ++    L  +++T +IMI  L
Sbjct: 398 LRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRL 457

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A  +FL ++    +P+  TF +LI G  R         L  KM + + +P+ 
Sbjct: 458 CKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNV 517

Query: 207 SIVSIVV 213
            + + ++
Sbjct: 518 VVYTSLI 524



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING C  ++   A   + EM  +G+KP+ + + T+  GL +   V  A  LFD  +  
Sbjct: 767 IMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKAS 826

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+  Y   I+GL      +++  +F   R+  C ++ +    L+D L K+  LE A
Sbjct: 827 GGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQA 886



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/186 (18%), Positives = 81/186 (43%)

Query: 33  IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           ++N   + +     ++   ++ +EM   G           +    K+  + E+  +   +
Sbjct: 135 VYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMM 194

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
           R  K      AY+ LI  L  + R +  L LFH +      A+V  ++ ++     +G++
Sbjct: 195 RKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRI 254

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           D A  L  +M+ N+   +++ +   I  F ++ +     +  H+MK + ++PD    + +
Sbjct: 255 DAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTL 314

Query: 213 VDLLAK 218
           + +L K
Sbjct: 315 IGVLCK 320


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 119/213 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK++ +E AL +Y EM  K + PDVV +  +  GL +  +VE A  +F EM+  G
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG 152

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   ID L K G + E+  L   + +     D+  Y+ L+DGL K+G    A 
Sbjct: 153 VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAE 212

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L    LV + VTYS +I G    G ++K   L  +MEE  + PNVI + +++ G+
Sbjct: 213 DMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGY 272

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +    ++ ++++ KM ++N++P+  +   ++D
Sbjct: 273 TKKGLLNEAMDVMRKMVQRNILPNVFVYGTLID 305



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+N EI  A+ L   M ++G  PD+V +NTL  G  +I  +  A KL  E+   
Sbjct: 22  VLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLV 81

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TYT  ID  CK+  + +++ ++  + +     D+  Y+C+++GLCKSG++E A
Sbjct: 82  NLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEA 141

Query: 121 LELFHSLP------------------------------RGVLVA-----DVVTYSIMIHG 145
             +F  +                               +G +V      DVV Y+ ++ G
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDG 201

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L+  G  + A D+F  + E ++ PN +T+  LI G  ++ + +K   LL +M+EK++ P+
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 206 ASIVSIVVDLLAK 218
             + S +VD   K
Sbjct: 262 VIVYSSIVDGYTK 274



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 13/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK+ ++E A +++ EM   G+ P+   + TL   LF+   V  AF L   M   G
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  +DGL K G    + ++F+ L       +   YS LIDG CK G +    
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGE 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +V+ YS ++ G    G +++A D+   M +  + PNV  +GTLI G+
Sbjct: 248 LLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
            + ++    ++L  +MK + +  +  ++   V+ L ++              R EE DE
Sbjct: 308 FKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRS-------------GRMEEADE 353



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 107/205 (52%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I+  V   N L  G     ++ RA +L + M+ +G A D  TY   ++G CK G +  + 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +L   + ++  E ++  Y+ LID  CKS  LE AL ++  +    LV DVVTY+ +++GL
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++++A  +F +MEE  V PN  ++ TLI    +    ++   L  +M  + +  D 
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTV 231
            + + ++D L K  ++ N+   F V
Sbjct: 193 VVYTALMDGLFKAGMANNAEDMFQV 217



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY K   +  A+++  +M+ + I P+V ++ TL  G F+  Q   A  LF EM+  G
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +      F++ L ++G + E+ ELF+ +       D   Y+ ++DG  K+G+   A 
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAF 387

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       DVV Y+++I+GL+  G+ + +      M +  +AP+  TF T+I+ +
Sbjct: 388 NIAQEMTEKSSGFDVVAYNVLINGLFKLGKYE-SESFHTGMRQLGLAPDSATFNTMINAY 446

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
            +       ++LL++MK   + P++   +I+V  L A  EI
Sbjct: 447 CKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEI 487



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           +IN YCK   +  AL L +EM S G+KP+ +  N L   L    ++E+   L ++M    
Sbjct: 442 MINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMG 501

Query: 58  -------------------QRD------------GVAADTRTYTIFIDGLCKNGYIVESV 86
                              + D            GV  D  TY   I   C+ G I  + 
Sbjct: 502 FHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRAT 561

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F+ +       DI  Y+ LI G C S  L+ A  +   +    +  +V TY+I++ GL
Sbjct: 562 LVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGL 621

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                + +A  L   M+E  + PN  T+  L+ G  +I    + ++L  +M  K  +P  
Sbjct: 622 SAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKT 681

Query: 207 SIVSIVVDLLAKNE 220
              ++++   AK +
Sbjct: 682 RTYNVLISCFAKGK 695



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K++  +  L+ + +++  G+K D+  +NTL      +  + RA  +F +M   G
Sbjct: 512 VLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I G C + ++ ++  +   +       +++ Y+ L+ GL  +  ++ A 
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA 631

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    LV +  TY I++ G    G M +   L+ +M      P   T+  LI  F
Sbjct: 632 GLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCF 691

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  + S+  EL+ +M+ + + P++S   I++
Sbjct: 692 AKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 12/229 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +C+   I  A  ++ +M+ KGI  D++ +N L  G      +++AF +  +M  +G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL     I E+  L   ++      +   Y  L+ G  K G ++  +
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +     V    TY+++I       +M +A +L  +M+   + PN  T+  LI G+
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGW 726

Query: 182 IRINE------------PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++++             ++   L  +M EK  +P  + ++ +   LAK
Sbjct: 727 YKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAK 775



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K      A +++  +L + + P+ V ++ L  G  ++  V +   L  EM+   
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  +DG  K G + E++++ R +       ++  Y  LIDG  K+ +  IAL
Sbjct: 258 IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIAL 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    L  +       ++ L   G+M++A +LF DM    + P+ + + +++ GF
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + S    +  +M EK+   D    +++++ L K
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K   +  A  L   M+ +GI  DVV++  L  GLF+      A  +F  +  + 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  IDG CK G + +   L + +       ++  YS ++DG  K G L  A+
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  ++ +V  Y  +I G +   Q   A DLF +M+   +  N     + ++  
Sbjct: 283 DVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNL 342

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     +  EL   M  + ++PD
Sbjct: 343 KRSGRMEEADELFKDMMSRGLLPD 366



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++     L  EM  K I P+V++++++  G  +   +  A  +  +M +  
Sbjct: 233 LIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   IDG  K      +++LF+ ++    E +       ++ L +SGR+E A 
Sbjct: 293 ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEAD 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    L+ D V Y+ M+ G +  G+   A ++  +M E +   +V+ +  LI+G 
Sbjct: 353 ELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGL 412

Query: 182 IRINEPSKVIELLHK-MKEKNVMPDASIVSIVVDLLAK 218
            ++ +     E  H  M++  + PD++  + +++   K
Sbjct: 413 FKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCK 448



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 36/251 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+ K  +   A N+  EM  K    DVV +N L  GLF++ + E        M++ G
Sbjct: 373 MMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESE-SFHTGMRQLG 431

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D+ T+   I+  CK G +  +++L   ++    + +    + L+  LC +G +E  +
Sbjct: 432 LAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTM 491

Query: 122 EL--------FHSLP---RGVLVA------------------------DVVTYSIMIHGL 146
           +L        FH  P   + VL A                        D+ TY+ +I   
Sbjct: 492 DLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTF 551

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G + +A  +F DM    +  ++IT+  LIHG+   +   K   +  +M  + V P+ 
Sbjct: 552 CRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNV 611

Query: 207 SIVSIVVDLLA 217
              +I++  L+
Sbjct: 612 ETYNILLGGLS 622



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G    + I+ A  L ++M  +G+ P+   ++ L  G  +I  ++   KL+ EM   
Sbjct: 616 ILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITK 675

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    TRTY + I    K   + ++ EL + +++     +   Y  LI   C   +L   
Sbjct: 676 GFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI---CGWYKLSKQ 732

Query: 121 LELFHSLPR 129
            EL  SL R
Sbjct: 733 PELNKSLKR 741


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C + ++  A+ ++ E + KG K  ++++NTL  GL +   V +A +L  +M   G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY + ++GLCK G + ++  +        C  DI  ++ LIDG CK   ++ A+
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+  ++    +  DV+TY+ +++GL    ++D   D F  M E    PN+IT+  LI  F
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESF 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
            +  + S+ +EL  +MK + + PD  ++ +++  L +  E+
Sbjct: 542 CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGEL 582



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 13/244 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK   +  A  + ++ ++KG  PD+   NTL  G  +   +++A ++ D M   
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   ++GLCK   +   V+ F+ +    C  +I  Y+ LI+  CK  ++  A
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIH 179
           +ELF  +    L  D+VT   +I GL ++G++DKA++LF+ +E E   + +   F  +I+
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN------------EISLNSLP 227
            F      S   +L HKM   +  PD     +++D   K              IS   +P
Sbjct: 611 AFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVP 670

Query: 228 SFTV 231
           SFT 
Sbjct: 671 SFTT 674



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 108/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   ++ A  +  + + KG  PD   +++L  GL     + RA  +F E    G
Sbjct: 327 IINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKG 386

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y   + GL K G ++++++L + +    C  DI  Y+ +++GLCK G L  A 
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDAN 446

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +       + D+ T++ +I G      MDKA ++   M  + + P+VIT+ TL++G 
Sbjct: 447 GILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGL 506

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +   V++    M EK   P+    +I+++   K+ 
Sbjct: 507 CKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDR 545



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 36/240 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK + ++ A+ +   MLS GI PDV+ +NTL  GL +  +++     F  M   G
Sbjct: 467 LIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I I+  CK+  + E++ELF+ ++      DI     LI GLC +G L+ A 
Sbjct: 527 CTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAY 586

Query: 122 ELF------------------------------------HSLPRGVLVADVVTYSIMIHG 145
           ELF                                    H +       D  TY +MI  
Sbjct: 587 ELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDS 646

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G +D AH   L+     + P+  T G +++     +  S+ + +++ M +  ++P+
Sbjct: 647 YCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 37/253 (14%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I+G+ K N +IE A +L+ EML +GI PD++  N L   L +   V+ + KLF ++ + 
Sbjct: 187 VISGFYKENCQIE-AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-----------------------RILKC 97
           GV  +  T+ IFI GLC+ G I E+  L  ++                       ++++ 
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 98  ELDIQ------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           E  +              Y+ +I+G CK+G ++ A ++         + D  TYS +I+G
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLING 365

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L NDG M++A  +F +  E     ++I + TL+ G  +     + ++L+  M E    PD
Sbjct: 366 LCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 206 ASIVSIVVDLLAK 218
               ++VV+ L K
Sbjct: 426 IWTYNLVVNGLCK 438



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 104/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I G C+   I+ A  L   ++S+G+ PDV+ +NTL  G  +  ++  A     +M   
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I+G CK G +  + ++ R         D   YS LI+GLC  G +  A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F+          ++ Y+ ++ GL   G + +A  L  DM E+  +P++ T+  +++G
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++   S    +L+    K  +PD    + ++D   K
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 102/219 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  +C       AL L + M  +G + + V +  +  G ++ +    A+ LFDEM + 
Sbjct: 151 IRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQ 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+   I  LCK G + ES +LF  +       ++  ++  I GLC+ G ++ A
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  S+    L  DV++Y+ +I G     ++ +A      M  + V PN  T+ T+I+G
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +        ++L     K  +PD    S +++ L  +
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++  Y +  +++ A+N++  M     +P V  +N +   L E     +A K++  M+  G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+TI +   C  G    ++ L   +    CE +  +Y  +I G  K      A 
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +  D++T++ +IH L   G + ++  LF  + +  V PN+ TF   I G 
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     +   LL  +  + + PD
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPD 285



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 84/173 (48%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +V+ A  +F+ M         ++Y   ++ L + GY  ++ +++  ++ +    D+  ++
Sbjct: 91  KVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHT 150

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
             +   C +GR   AL L +++P      + V+Y  +I G Y +    +A+ LF +M + 
Sbjct: 151 IRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQ 210

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + P+++TF  LIH   +     +  +L  K+ ++ V P+    +I +  L +
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCR 263


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+    ++  AL+L  EM+S G+ PD+V  +TL  GL +  +++ A ++F  MQ+  
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI GF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I PDVV +N L     +  +   A +L+DEM   G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY+  IDG CK   +  +  +F  +    C  ++  ++ LIDG C + R++  +
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    LVAD  TY+ +IHG Y  G ++ A DL  +M  + + P+++T  TL+ G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++     DAS
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDAS 501



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  ALNL+ +M     +P+VV   TL  GL    ++  A  L D M  DG
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY   +DG+CK G  V ++ L R +  +     ++  YS +ID LCK GR   A
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ MI G  + G+   A  L  +M E  ++P+V+T+  LI+ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F++  +  +  EL  +M  + ++P+    S ++D   K 
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV  NTL  GL    +V  A  LF +M   
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+T  ++GLC+ G IVE+V L   +     +     Y  ++DG+CK G    A
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     ++ +VV YS +I  L  DG+   A +LF +M+E  + P++ T+ ++I 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S   +LL +M E+ + PD    + +++   K
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VA+ +TY  +I G    G ++ A D+F +M  + V P+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L K++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+     A NL++EM  KGI PD+  +N++ +G     +   A +L  EM    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I+   K G   E+ EL+  +       +   YS +IDG CK  RL+ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +       +++T++ +I G     ++D   +L  +M E  +  +  T+ TLIHGF
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER-QEEVDE 240
             + + +  ++LL +M    + PD      ++D L  N    ++L  F V ++ ++++D 
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 241 SN 242
           S+
Sbjct: 501 SH 502



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   ALNL  +M     I P+VVI++ +   L +  +   A  LF EMQ  
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C +G   ++ +L + +   K   D+  Y+ LI+   K G+   A
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TYS MI G     ++D A  +F  M     +PN+ITF TLI 
Sbjct: 345 EELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+         +ELLH+M E  ++ D +  + ++
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+S+ML     P VV    L   +  + + +    L+ +M+R  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++TI I   C    +  ++  F  +  L    D+  ++ L+ GLC   R+  AL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +       +VVT++ +++GL  +G++ +A  L   M E+ + P  IT+GT++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            +  +    + LL KM+E  +++P+  I S ++D L K+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   I  A+ L   M+  G++P  + + T+  G+ +      A  L  +M+   
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  ID LCK+G   ++  LF  ++      D+  Y+ +I G C SGR   A
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  DVVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + N       + + M  K   P+    + ++D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  + + + TL  G  ++  +  A  +F EM   G
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + GL     +  +V +   L++
Sbjct: 647 VYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+    ++  AL+L  EM+S G+ PD+V  +TL  GL +  +++ A ++F  MQ+  
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI GF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I PDVV +N L     +  +   A +L+DEM   G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY+  IDG CK   +  +  +F  +    C  ++  ++ LIDG C + R++  +
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    LVAD  TY+ +IHG Y  G ++ A DL  +M  + + P+++T  TL+ G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++     DAS
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDAS 501



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  ALNL+ +M     +P+VV   TL  GL    ++  A  L D M  DG
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY   +DG+CK G  V ++ L R +  +     ++  YS +ID LCK GR   A
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ MI G  + G+   A  L  +M E  ++P+V+T+  LI+ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F++  +  +  EL  +M  + ++P+    S ++D   K 
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VA+ +TY  +I G    G ++ A D+F +M  + V P+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L K++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+     A NL++EM  KGI PD+  +N++ +G     +   A +L  EM    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I+   K G   E+ EL+  +       +   YS +IDG CK  RL+ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +       +++T++ +I G     ++D   +L  +M E  +  +  T+ TLIHGF
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER-QEEVDE 240
             + + +  ++LL +M    + PD      ++D L  N    ++L  F V ++ ++++D 
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 241 SN 242
           S+
Sbjct: 501 SH 502



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV   TL  GL    +V  A  LF +M   
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+T  ++GLC+ G IVE+V L   +     +     Y  ++DG+CK G    A
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     ++ +VV YS +I  L  DG+   A +LF +M+E  + P++ T+ ++I 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S   +LL +M E+ + PD    + +++   K
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   ALNL  +M     I P+VVI++ +   L +  +   A  LF EMQ  
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C +G   ++ +L + +   K   D+  Y+ LI+   K G+   A
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TYS MI G     ++D A  +F  M     +PN+ITF TLI 
Sbjct: 345 EELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+         +ELLH+M E  ++ D +  + ++
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+S+ML     P VV    L   +  + + +    L+ +M+R  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++ I I   C    +  ++  F  +  L    D+  ++ L+ GLC   R+  AL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +       +VVT++ +++GL  +G++ +A  L   M E+ + P  IT+GT++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            +  +    + LL KM+E  +++P+  I S ++D L K+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   I  A+ L   M+  G++P  + + T+  G+ +      A  L  +M+   
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  ID LCK+G   ++  LF  ++      D+  Y+ +I G C SGR   A
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  DVVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + N       + + M  K   P+    + ++D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  + + + TL  G  ++  +  A  +F EM   G
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + GL     +  +V +   L++
Sbjct: 647 VYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+    ++  AL+L  EM+S G+ PD+V  +TL  GL +  +++ A ++F  MQ+  
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI GF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I PDVV +N L     +  +   A +L+DEM   G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY+  IDG CK   +  +  +F  +    C  ++  ++ LIDG C + R++  +
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    LVAD  TY+ +IHG Y  G ++ A DL  +M  + + P+++T  TL+ G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++     DAS
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDAS 501



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  ALNL+ +M     +P+VV   TL  GL    ++  A  L D M  DG
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY   +DG+CK G  V ++ L R +  +     ++  YS +ID LCK GR   A
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ MI G  + G+   A  L  +M E  ++P+V+T+  LI+ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F++  +  +  EL  +M  + ++P+    S ++D   K 
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV  NTL  GL    +V  A  LF +M   
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+T  ++GLC+ G IVE+V L   +     +     Y  ++DG+CK G    A
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     ++ +VV YS +I  L  DG+   A +LF +M+E  + P++ T+ ++I 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S   +LL +M E+ + PD    + +++   K
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VA+ +TY  +I G    G ++ A D+F +M  + V P+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L K++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+     A NL++EM  KGI PD+  +N++ +G     +   A +L  EM    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I+   K G   E+ EL+  +       +   YS +IDG CK  RL+ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +       +++T++ +I G     ++D   +L  +M E  +  +  T+ TLIHGF
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER-QEEVDE 240
             + + +  ++LL +M    + PD      ++D L  N    ++L  F V ++ ++++D 
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 241 SN 242
           S+
Sbjct: 501 SH 502



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   ALNL  +M     I P+VVI++ +   L +  +   A  LF EMQ  
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C +G   ++ +L + +   K   D+  Y+ LI+   K G+   A
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TYS MI G     ++D A  +F  M     +PN+ITF TLI 
Sbjct: 345 EELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+         +ELLH+M E  ++ D +  + ++
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+S+ML     P VV    L   +  + + +    L+ +M+R  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++TI I   C    +  ++  F  L  L    D+  ++ L+ GLC   R+  AL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +       +VVT++ +++GL  +G++ +A  L   M E+ + P  IT+GT++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            +  +    + LL KM+E  +++P+  I S ++D L K+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   I  A+ L   M+  G++P  + + T+  G+ +      A  L  +M+   
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  ID LCK+G   ++  LF  ++      D+  Y+ +I G C SGR   A
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  DVVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + N       + + M  K   P+    + ++D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  + + + TL  G  ++  +  A  +F EM   G
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + GL     +  +V +   L++
Sbjct: 647 VYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+    ++  AL+L  EM+S G+ PD+V  +TL  GL +  +++ A ++F  MQ+  
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI GF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I PDVV +N L     +  +   A +L+DEM   G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY+  IDG CK   +  +  +F  +    C  ++  ++ LIDG C + R++  +
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    LVAD  TY+ +IHG Y  G ++ A DL  +M  + + P+++T  TL+ G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++     DAS
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDAS 501



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  AL+ + +M     +P+VV   TL  GL    ++  A  L D M  DG
Sbjct: 155 LLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY   +DG+CK G  V ++ L R +  +     ++  YS +ID LCK GR   A
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ MI G  + G+   A  L  +M E  ++P+V+T+  LI+ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F++  +  +  EL  +M  + ++P+    S ++D   K 
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VA+ +TY  +I G    G ++ A D+F +M  + V P+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L K++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+     A NL++EM  KGI PD+  +N++ +G     +   A +L  EM    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I+   K G   E+ EL+  +       +   YS +IDG CK  RL+ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +       +++T++ +I G     ++D   +L  +M E  +  +  T+ TLIHGF
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER-QEEVDE 240
             + + +  ++LL +M    + PD      ++D L  N    ++L  F V ++ ++++D 
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 241 SN 242
           S+
Sbjct: 501 SH 502



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV   TL  GL    +V  A   F +M   
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFET 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+T  ++GLC+ G IVE+V L   +     +     Y  ++DG+CK G    A
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     ++ +VV YS +I  L  DG+   A +LF +M+E  + P++ T+ ++I 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S   +LL +M E+ + PD    + +++   K
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   ALNL  +M     I P+VVI++ +   L +  +   A  LF EMQ  
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C +G   ++ +L + +   K   D+  Y+ LI+   K G+   A
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TYS MI G     ++D A  +F  M     +PN+ITF TLI 
Sbjct: 345 EELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+         +ELLH+M E  ++ D +  + ++
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+S+ML     P VV    L   +  + + +    L+ +M+R  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++ I I   C    +  ++  F  +  L    D+  ++ L+ GLC   R+  AL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH +       +VVT++ +++GL  +G++ +A  L   M E+ + P  IT+GT++ G 
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            +  +    + LL KM+E  +++P+  I S ++D L K+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   I  A+ L   M+  G++P  + + T+  G+ +      A  L  +M+   
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  ID LCK+G   ++  LF  ++      D+  Y+ +I G C SGR   A
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  DVVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + N       + + M  K   P+    + ++D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  + + + TL  G  ++  +  A  +F EM   G
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + GL     +  +V +   L++
Sbjct: 647 VYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G CK    +  L L   M S KG  PD + +N L  G  +  ++E+  +LFDEM ++
Sbjct: 389 LIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKE 448

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  T    + G+C+ G +  +V  F   +    + D   Y+ LI+  C     E A
Sbjct: 449 GVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKA 508

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +ELF+ + +     D + Y  +I G    G+M  A  +  ++++  + P+ + + TLI G
Sbjct: 509 MELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGG 568

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F R N+  +V E+L +M+E  + PD    + ++   +KN
Sbjct: 569 FCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKN 607



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 9/215 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEM--------LSKGIKPDVVIHNTLFIGLFEIHQVERAFK 52
           ILIN  CK + ++ AL +  +M        +S  ++PDVVI+NTL  GL ++ + +    
Sbjct: 345 ILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLG 404

Query: 53  LFDEMQ-RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           L + M+ + G A DT TY   IDG CK G I +  ELF  +       ++   + L+ G+
Sbjct: 405 LMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGM 464

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           C++GR+  A+  F    R  +  D VTY+ +I+   N    +KA +LF +M ++  +P+ 
Sbjct: 465 CRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDA 524

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           I + TLI GF +    +    +L ++K+  + PD 
Sbjct: 525 IVYYTLISGFSQAGRMADASFVLAELKKLGIRPDT 559



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C+   +  A+N + E   +G+K D V +  L      ++  E+A +LF+EM + G
Sbjct: 460 LVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSG 519

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D   Y   I G  + G + ++  +   L+ L    D   Y+ LI G C++ +     
Sbjct: 520 CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVF 579

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    L  D +TY+ +I     +G +  A  +   M +  V P V T+G +I+ +
Sbjct: 580 EMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAY 639

Query: 182 IRINEPSKVIELLHKMKEKN-VMPDASIVSIVVDLLAKN 219
                 ++ +E+   MK  + V P+  I +I+++ L KN
Sbjct: 640 CLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKN 678



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +   +  A  + +E+   GI+PD V +NTL  G    ++  R F++  EM+  G
Sbjct: 530 LISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAG 589

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I    KNG +  + ++ R +        +  Y  +I+  C +G    A+
Sbjct: 590 LKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAM 649

Query: 122 ELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           E+F  +     V  + V Y+I+I+ L  + ++  A  L  DM+   V PN  T+  +  G
Sbjct: 650 EIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKG 709

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
                +  KV E + +M E    PD   + I+ + L+
Sbjct: 710 LRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLS 746



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 5/196 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+  +      +  EM   G+KPD + +NTL     +   ++ A K+  +M + G
Sbjct: 565 LIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAG 624

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCKSGRLEIA 120
           V     TY   I+  C NG   E++E+F+ ++   K   +   Y+ LI+ LCK+ +++ A
Sbjct: 625 VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSA 684

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    +  +  TY+ +  GL ++  ++K  +    M E+A  P+ IT   L   
Sbjct: 685 VSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEW 744

Query: 181 FIRINEPSKVIELLHK 196
              + E    IE L K
Sbjct: 745 LSAVGE----IERLKK 756



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI  LC++ +     +LF  + +   V +    + ++ GL  +G  ++ ++L   M E  
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 167 VAPNVITFGTLIH---GFIRINEPSKVIELLHKMKEK-----NVMPDASIVSIVVDLLAK 218
           + PNV+TFG LI+    F R+++  +V+E +   KE      +V PD  I + ++D L K
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CKN +++ A++L  +M   G+ P+   +N +F GL +   +E+ F+  D M   
Sbjct: 670 ILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEH 729

Query: 61  GVAADTRTYTIFIDGLCKNGYI 82
               D  T  I  + L   G I
Sbjct: 730 ACNPDYITMEILTEWLSAVGEI 751


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 123/217 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YCK   +E A  LY EM+  G  PDVV ++++  GL +  ++  A +L  EM++ G
Sbjct: 244 IISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   YT  ID L K G   E+      L +    LD+   + L+DGL KS + + A 
Sbjct: 304 VDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAE 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F +L +  L+ + +TY+ +I G    G M++   L  +MEE  + PNVIT+ ++I+G+
Sbjct: 364 DMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGY 423

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + I ++ KM ++N++P+A + +I++D   K
Sbjct: 424 TKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCK 460



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I  YCK  E++ AL L++EM S  I P  +  NTL +GL E  ++E+A  + +EM   
Sbjct: 592 IMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVM 651

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   + + ++   K+G     +++   L  +  +++ +AY+ LI   C+    + A
Sbjct: 652 GIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKA 711

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + R   VAD VTY+ +I G      + KA   +  M    V+PN++T+  L+ G
Sbjct: 712 TSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGG 771

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     ++  EL  KMKE  + PDAS    ++    K
Sbjct: 772 LLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGK 809



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 121/237 (51%), Gaps = 7/237 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGY K   ++ A+N+  +ML + I P+  ++  L  G  +  + E A  L++EM+  G
Sbjct: 419 IINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   + + ++ L +   + E+ EL + +      LD   Y+ L+DG  K+G+   AL
Sbjct: 479 LKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAAL 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  DVVTY+++I+GL   G+ + A  ++  M E  +APN  T+  +I  +
Sbjct: 539 NMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIMIKAY 597

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEIS-----LNSLPSFTVH 232
            +  E    +EL ++MK   +MP + +  ++VV L    EI      LN +    +H
Sbjct: 598 CKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIH 654



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 56/276 (20%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----------- 50
           LI+GYCK  E+  AL+L   M  +G+  D+V +NTL  G  +  + ++A           
Sbjct: 153 LIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESR 212

Query: 51  -------FKLFDEMQRD---GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
                  F + D +++D    + AD  TYT  I   CK   + E+  L+  + I     D
Sbjct: 213 GVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPD 272

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPR-GV---------------------------- 131
           +  YS +++GLCK GRL  A EL   + + GV                            
Sbjct: 273 VVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQS 332

Query: 132 ------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
                 +  D+V  + ++ GL+   +  +A D+F  + +  + PN IT+  LI G+ ++ 
Sbjct: 333 QLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVG 392

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +  +V  LL +M+EK++ P+    S +++   K  I
Sbjct: 393 DMERVESLLQEMEEKHINPNVITYSSIINGYTKKGI 428



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK+  +  A  L  EM   G+ P+ V + TL   LF+      AF    ++   G
Sbjct: 279 IVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRG 338

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D    T  +DGL K+    E+ ++FR L  L    +   Y+ LIDG CK G +E   
Sbjct: 339 MTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVE 398

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +V+TYS +I+G    G +D+A ++   M +  + PN   +  LI G+
Sbjct: 399 SLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGY 458

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +     +L ++MK    +    + +++ D+L  N
Sbjct: 459 CKAGKQEIATDLYNEMK----LSGLKVNNVLFDVLVNN 492



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 113/219 (51%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GYCK  + E A +LY+EM   G+K + V+ + L   L    +++ A +L  ++   
Sbjct: 453 ILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSR 512

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  +DG  K G    ++ +   +       D+  Y+ LI+GL + G+ E A
Sbjct: 513 GLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-A 571

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  +    L  +  TY+IMI      G++D A +L+ +M+ + + P+ IT  TL+ G
Sbjct: 572 KSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVG 631

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                E  K + +L++M    + P+  I  ++++  +K+
Sbjct: 632 LSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKS 670



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C++  +  A    S M+ K    D +  N L  G   I   +   ++ D +   G
Sbjct: 83  VIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGG 142

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   +   IDG CK G +  +++L   +R      DI +Y+ LI+G CK G  + A 
Sbjct: 143 TCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAK 202

Query: 122 ELFH--SLPRGV-------------------LVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
            L H  S  RGV                   L AD++TY+ +I        +++A  L+ 
Sbjct: 203 SLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYE 262

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +M  N   P+V+T+ ++++G  +    S+  ELL +MK+  V P+    + ++D L K
Sbjct: 263 EMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFK 320



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 21/240 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+C+    +    +   ++S G   DV+  NTL  G  +  ++  A  L + M+++
Sbjct: 117 ILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKE 176

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------RI-----LKCEL 99
           G+ +D  +Y   I+G CK G   ++  L   +                RI     L  E 
Sbjct: 177 GLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEA 236

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D+  Y+ +I   CK   LE A  L+  +     + DVVTYS +++GL  DG++ +A +L 
Sbjct: 237 DLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELL 296

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +M++  V PN + + TLI    +     +      ++  + +  D  + + +VD L K+
Sbjct: 297 REMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKS 356



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 112/215 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K+ + + A +++  +    + P+ + +  L  G  ++  +ER   L  EM+   
Sbjct: 349 LVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKH 408

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I+G  K G + E++ + + +       +   Y+ LIDG CK+G+ EIA 
Sbjct: 409 INPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIAT 468

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +    L  + V + ++++ L    +MD+A +L  D+    +  + + + +L+ GF
Sbjct: 469 DLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGF 528

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +  + S  + ++ +M EK++  D    +++++ L
Sbjct: 529 FKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGL 563



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 3/195 (1%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++Y+EML   + P+V  HN L     ++  +  A  L   +    V  DT TY   I G 
Sbjct: 31  DIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILALDLLRNVD---VEVDTVTYNTVIWGF 87

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C++G + ++      +       D    + L+ G C+ G  +    +  +L  G    DV
Sbjct: 88  CQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDV 147

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           + ++ +I G    G+M  A DL   M +  +  +++++ TLI+GF +  E  K   LLH+
Sbjct: 148 IGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHE 207

Query: 197 MKEKNVMPDASIVSI 211
           + E   + D+   +I
Sbjct: 208 ISESRGVKDSVFFNI 222



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 47/229 (20%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC++  ++ AL  Y++ML++G+ P++V +N L  GL     +    +LFD+M+ +G
Sbjct: 733 LIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENG 792

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G  K G   ES+ L+       CE+  Q +                 
Sbjct: 793 LNPDASTYDTLISGYGKIGNKKESIRLY-------CEMVAQGF----------------- 828

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                      V    TY+++I      G+MD+A +L  +M+   V P+  T+  LI G+
Sbjct: 829 -----------VPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGW 877

Query: 182 IRINEPSKVIELLHK------------MKEKNVMPDASIVSIVVDLLAK 218
             +++   +   L K            M +K  +P  S ++ +    A+
Sbjct: 878 CNLSKHPDLDRTLKKIYRTDAKNLITEMNDKGFVPCKSTIACISSTFAR 926



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N   K+ +    L ++ +++  G+K +   +N L +    +   ++A  +   M RD
Sbjct: 662 VLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRD 721

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  ADT TY   I G C++ ++ +++  +  +       +I  Y+ L+ GL  +G +   
Sbjct: 722 GFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAER 781

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    L  D  TY  +I G    G   ++  L+ +M      P   T+  LI  
Sbjct: 782 DELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISD 841

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F ++ +  +  ELL++M+ + V P +S   I++
Sbjct: 842 FAKVGKMDQARELLNEMQVRGVPPSSSTYDILI 874



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 99/193 (51%), Gaps = 1/193 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N   + K ++ A  L  ++ S+G+  D V + +L  G F+  +   A  + +EM   
Sbjct: 488 VLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEK 547

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY + I+GL ++G   E+  ++  +  +    +   Y+ +I   CK G L+ A
Sbjct: 548 SIPFDVVTYNVLINGLLEHGK-YEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNA 606

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL++ +    ++   +T + ++ GL   G+++KA ++  +M    + PN++    L++ 
Sbjct: 607 LELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNA 666

Query: 181 FIRINEPSKVIEL 193
             +  + + V+++
Sbjct: 667 SSKSGKANAVLQM 679



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 7/208 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K  +   ALN+  EM  K I  DVV +N L  GL E H    A  ++  M   G
Sbjct: 524 LMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLE-HGKYEAKSVYSGMIEMG 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TY I I   CK G +  ++EL+  ++  K        + L+ GL ++G +E A+
Sbjct: 583 LAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAM 642

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD---KAHDLFLDMEENAVAPNVITFGTLI 178
            + + +    +  ++V + ++++     G+ +   + H+  +DM    +  N   +  LI
Sbjct: 643 NVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDM---GLKINQEAYNNLI 699

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDA 206
             F R+    K   +L  M     + D 
Sbjct: 700 VVFCRLRMTKKATSVLKYMIRDGFVADT 727



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 3/184 (1%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M    I P +++ N L         V +   ++ EM    V  +  T+ + +   CK G 
Sbjct: 1   MRKHNIVPTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGN 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           ++ +++L R + +   E+D   Y+ +I G C+ G +  A      + +     D +T +I
Sbjct: 61  LILALDLLRNVDV---EVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNI 117

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++ G    G       +  ++       +VI F TLI G+ +  E S  ++L+ +M+++ 
Sbjct: 118 LVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEG 177

Query: 202 VMPD 205
           ++ D
Sbjct: 178 LLSD 181


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+    ++  AL+L  EM+S G+ PD+V  +TL  GL +  +++ A ++F  MQ+  
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI GF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I PDVV +N L     +  +   A +L+DEM   G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY+  IDG CK   +  +  +F  +    C  ++  ++ LIDG C + R++  +
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    LVAD  TY+ +IHG Y  G ++ A DL  +M  + + P+++T  TL+ G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++     DAS
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDAS 501



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  ALNL+ +M     +P+VV   TL  GL    ++  A  L D M  DG
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY   +DG+CK G  V +++L R +  I     ++  YS +ID LCK GR   A
Sbjct: 215 LQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ MI G  + G+   A  L  +M E  ++P+V+T+  LI+ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F++  +  +  EL  +M  + ++P+    S ++D   K 
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV  NTL  GL    +V  A  LF +M   
Sbjct: 119 ILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFET 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+T  ++GLC+ G IVE+V L   +     +     Y  ++DG+CK G    A
Sbjct: 179 TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSA 238

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L+L   +     ++ +VV YS +I  L  DG+   A +LF +M+E  + P++ T+ ++I 
Sbjct: 239 LDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S   +LL +M E+ + PD    + +++   K
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VA+ +TY  +I G    G ++ A D+F +M  + V P+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L K++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+     A NL++EM  KGI PD+  +N++ +G     +   A +L  EM    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I+   K G   E+ EL+  +       +   YS +IDG CK  RL+ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+ +       +++T++ +I G     ++D   +L  +M E  +  +  T+ TLIHGF
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER-QEEVDE 240
             + + +  ++LL +M    + PD      ++D L  N    ++L  F V ++ ++++D 
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 241 SN 242
           S+
Sbjct: 501 SH 502



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++G CK  +   AL+L  +M     I P+VVI++ +   L +  +   A  LF EMQ  
Sbjct: 225 IVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C +G   ++ +L + +   K   D+  Y+ LI+   K G+   A
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TYS MI G     ++D A  +F  M     +PN+ITF TLI 
Sbjct: 345 EELYDEMLPRGI-IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+         +ELLH+M E  ++ D +  + ++
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+ + K +E A++L+S+ML     P VV    L   +  + + +    L+ +M+R  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++TI I   C    +  ++  F  +  L    D+  ++ L+ GLC   R+  AL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +       +VVT++ +++GL  +G++ +A  L   M E+ + P  IT+GT++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            +I +    ++LL KM+E  +++P+  I S ++D L K+
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKD 268



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   I  A+ L   M+  G++P  + + T+  G+ +I     A  L  +M+   
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEIS 249

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  ID LCK+G   ++  LF  ++      D+  Y+ +I G C SGR   A
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  DVVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + N       + + M  K   P+    + ++D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  + + + TL  G  ++  +  A  +F EM   G
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + GL     +  +V +   L++
Sbjct: 647 VYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|297723045|ref|NP_001173886.1| Os04g0349600 [Oryza sativa Japonica Group]
 gi|255675357|dbj|BAH92614.1| Os04g0349600, partial [Oryza sativa Japonica Group]
          Length = 260

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCKN  I+ AL ++ +ML KG+KP  V++N +  GLF+  +   A K+F EM   G
Sbjct: 26  LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESG 85

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                +TY + + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 86  TTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAK 145

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV  V TY++MI  L  +   ++A +LF+ +E++  AP+      ++   
Sbjct: 146 ELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRML 205

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  E +K    L  + E N+  +AS +S++  L ++
Sbjct: 206 LKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR 242



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L D M   G+  +   Y   +DG CKNG I +++ +FR +     +     Y+ ++ GL 
Sbjct: 7   LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLF 66

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           ++ R   A ++FH +        + TY +++ GL  +   D+A+ L   +    V  ++I
Sbjct: 67  QARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII 126

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           TF  +I   +++    +  EL   +    ++P     ++++  L K E
Sbjct: 127 TFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEE 174


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL + +CK  +I  A +++  +   G++P VV +NTL  G   +  ++  FKL   M   
Sbjct: 147 ILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   +  + ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G +++AHDL  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 101/179 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   + +A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+ +   G + K   L  +M+ +  AP+V+T+  L++G
Sbjct: 373 KMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G+ PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L  A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        +++ +M    + PD    +++++ + K
Sbjct: 363 CQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCK 399



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  K  +LL +M+     P     +++++
Sbjct: 397 VCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMN 430



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I     CK G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+   +L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 121/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CKNK +  A ++YSEM+ KGI PDVV + TL  G   +  ++ AF L +EM+   
Sbjct: 203 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKN 262

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+ I ID L K G + E+  L   +     + D+  Y+ LIDG      ++ A 
Sbjct: 263 INPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAK 322

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+S+ +  +  DV  Y+ MI+GL     +D+A  LF +M+   + P+++T+ +LI G 
Sbjct: 323 YVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGL 382

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + +   + I L  +MKE+ + PD    +I++D L K+
Sbjct: 383 CKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKS 420



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 110/202 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY    E++ A  ++  M  +G+ PDV  +  +  GL +   V+ A  LF+EM+   
Sbjct: 308 LIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKN 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   IDGLCKN ++  ++ L + ++    + D+ +Y+ L+DGLCKSGRLE A 
Sbjct: 368 MIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAK 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L       +V  Y+++I+ L   G  D+A DL   ME+    P+ +TF  +I   
Sbjct: 428 EIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRAL 487

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
              +E  K  ++L +M  + ++
Sbjct: 488 FEKDENDKAEKILREMIARGLL 509



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 115/216 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+   K  +++ A  L + M+   IKPDV  +N+L  G F + +V+ A  +F  M + 
Sbjct: 272 ILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQR 331

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D + YT  I+GLCK   + E++ LF  ++      DI  Y+ LIDGLCK+  LE A
Sbjct: 332 GVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERA 391

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    +  DV +Y+I++ GL   G+++ A ++F  +       NV  +  LI+ 
Sbjct: 392 IALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINR 451

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +     + ++L  KM++K  MPDA    I++  L
Sbjct: 452 LCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRAL 487



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E +    L  ++    +KPDVV++NT+   L +   +  A  ++ EM   G
Sbjct: 168 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TYT  I G C  G++ E+  L   +++     ++  ++ LID L K G+++ A 
Sbjct: 228 ISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAK 287

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  DV TY+ +I G +   ++  A  +F  M +  V P+V  +  +I+G 
Sbjct: 288 ILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGL 347

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + L  +MK KN++PD    + ++D L KN
Sbjct: 348 CKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKN 385



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 113/220 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   EI+ AL  + +++++G + D V + TL  GL +  + +   +L  +++   
Sbjct: 133 LIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHS 192

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y   I+ LCKN  + ++ +++  + +     D+  Y+ LI G C  G L+ A 
Sbjct: 193 VKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAF 252

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V T++I+I  L  +G+M +A  L   M +  + P+V T+ +LI G+
Sbjct: 253 SLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGY 312

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             ++E      + + M ++ V PD    + +++ L K ++
Sbjct: 313 FLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKM 352



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 105/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    I  A ++++ +L +G  P+ +  NTL  GL    ++++A    D++   
Sbjct: 97  ILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQ 156

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G       L R L     + D+  Y+ +I+ LCK+  L  A
Sbjct: 157 GFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDA 216

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +++  +    +  DVVTY+ +IHG    G + +A  L  +M+   + PNV TF  LI  
Sbjct: 217 CDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDA 276

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +   LL  M +  + PD    + ++D
Sbjct: 277 LSKEGKMKEAKILLAVMMKACIKPDVFTYNSLID 310



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 104/210 (49%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           NK     ++L+ +    GI PD+   + L         +  AF +F  + + G   +  T
Sbjct: 70  NKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAIT 129

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
               I GLC  G I +++     L     +LD  +Y  LI+GLCK+G  +    L   L 
Sbjct: 130 LNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLE 189

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +  DVV Y+ +I+ L  +  +  A D++ +M    ++P+V+T+ TLIHGF  +    
Sbjct: 190 GHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLK 249

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   LL++MK KN+ P+    +I++D L+K
Sbjct: 250 EAFSLLNEMKLKNINPNVCTFNILIDALSK 279



 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  CK    + AL+L S+M  KG  PD V  + +   LFE  + ++A K+  EM   
Sbjct: 447 VLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIAR 506

Query: 61  GV 62
           G+
Sbjct: 507 GL 508


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 35/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K   +  AL +Y+EM   G+ P+V  +  L  G  + + ++ A K+ DEM+  G
Sbjct: 579 IIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKG 638

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL----------------------FRTLRILKCEL 99
           +  D   Y   IDG C+ G +V + +L                      FR L+ ++  L
Sbjct: 639 IELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAAL 698

Query: 100 -------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+Q Y+ LI GL K G+L  A EL+  +    ++ D++TYS++IHGL
Sbjct: 699 HLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGL 758

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N GQ++ A  +  DM+   + P V  + TLI G  +     +   L ++M +K ++PD 
Sbjct: 759 CNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDD 818

Query: 207 SIVSIVVD 214
           +   I+V+
Sbjct: 819 TTYDILVN 826



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+  +++ A  ++ EML KG+KP+++ ++ L  G F+    E AF L+D M+ + 
Sbjct: 474 MILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGEN 533

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    T  I I+GLCK G   ES +  + L           Y+C+IDG  K G +  AL
Sbjct: 534 IAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSAL 593

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  + +  +  +V TY+ +I+G      MD A  +  +M+   +  +V  +  LI GF
Sbjct: 594 AVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGF 653

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +     +LL +++E  + P+  + S ++    K
Sbjct: 654 CRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 119/249 (47%), Gaps = 35/249 (14%)

Query: 5   GYC-KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
           G C K  ++  A+ +  EMLS G   +VV+  TL  G  +   ++ A +LFD+M  +G+ 
Sbjct: 302 GVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGIC 361

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLR------------------------------ 93
            +  TY + I+  CKNG + ++ E++  ++                              
Sbjct: 362 PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKL 421

Query: 94  ---ILKCEL-DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
               + C + ++  Y+ L+  LCK G++  A  ++  + R  +   VV+Y+ MI G    
Sbjct: 422 FDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQ 481

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G MD A+ +F++M E  + PN+IT+  L+ G+ +  +      L  +M+ +N+ P     
Sbjct: 482 GDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTC 541

Query: 210 SIVVDLLAK 218
           +I+++ L K
Sbjct: 542 NIIINGLCK 550



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 97/182 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+  ++  A  L SE+   G+ P+ V+++++  G  ++  +E A  L   M  +G
Sbjct: 649 LIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEG 708

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D + YT  I GL K G ++ + EL+  +       D+  YS LI GLC  G+LE A 
Sbjct: 709 IPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQ 768

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + R  +   V  Y+ +I G + +G + +A  L  +M +  + P+  T+  L++G 
Sbjct: 769 KILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGK 828

Query: 182 IR 183
           ++
Sbjct: 829 VK 830



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 2/225 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CKN  ++ A  +Y++M +K I P V   N+L  G  +    E A KLFDE    
Sbjct: 369 VIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVAC 428

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +  TY   +  LCK G + E+  ++  +        + +Y+ +I G C+ G ++ A
Sbjct: 429 GIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSA 487

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L  +++TYS+++ G +  G  + A  L+  M    +AP+  T   +I+G
Sbjct: 488 NGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIING 547

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +    S+  + L K+ ++  +P     + ++D   K E S+NS
Sbjct: 548 LCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVK-EGSVNS 591



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 35/229 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I ++   KN  I  A ++Y++M SKG+K D    + +        ++E A   F E +  
Sbjct: 194 IFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNK 253

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--------------------------- 93
           GV  D R Y+I I+ +CK    V ++ L R +R                           
Sbjct: 254 GVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEA 313

Query: 94  ------ILKC--ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                 +L C   +++   + L+ G CK G L+ ALELF  +    +  + VTY+++I  
Sbjct: 314 VKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEW 373

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
              +G MDKA++++  M+   ++P V    +LI G+++   P +  +L 
Sbjct: 374 CCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLF 422



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 102/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK      + +   +++ +G  P  + +N +  G  +   V  A  ++ EM + 
Sbjct: 543 IIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI 602

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TYT  I+G CK+  +  ++++   ++    ELD+  Y  LIDG C+ G +  A
Sbjct: 603 GVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNA 662

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   L    L  + V YS MI G      M+ A  L   M    +  ++  + TLI G
Sbjct: 663 SQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISG 722

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++  +     EL  +M  K +MPD    S+++
Sbjct: 723 LLKEGKLLFASELYAEMLAKGIMPDLITYSVLI 755



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N Y K K I  A++ ++ ++ K I P + + N     L + + +  A  ++++M   G
Sbjct: 160 LLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKG 219

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T ++ I    + G + E+   FR  +    ELD +AYS +I+ +CK      AL
Sbjct: 220 VKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAAL 279

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V   V ++ +I      G+M +A  +  +M       NV+   TL+ G+
Sbjct: 280 GLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGY 339

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +    +EL  KM E  + P+    +++++   KN
Sbjct: 340 CKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKN 377



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 81/151 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K + +E AL+L+  M+++GI  D+ I+ TL  GL +  ++  A +L+ EM   G
Sbjct: 684 MISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKG 743

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++ I GLC  G +  + ++   +        +  Y+ LI G  K G L+ A 
Sbjct: 744 IMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAF 803

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
            L + +    LV D  TY I+++G   DG +
Sbjct: 804 RLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C   ++E A  +  +M  K + P V I+NTL  G F+   ++ AF+L +EM   
Sbjct: 753 VLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDK 812

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D  TY I ++G  K+G
Sbjct: 813 GLVPDDTTYDILVNGKVKDG 832


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 115/201 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C    +E A+++ ++M+  GIKPDVV++ T+   L +   V  A  LFD+M+  G
Sbjct: 148 LINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYG 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  ++GLC +G   ++  L R +   K + D+  ++ LID   K G+   A 
Sbjct: 208 IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAE 267

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL++ + R  +  ++ TY+ +I+G   +G +D+A  +F  ME     P+V+ + +LI+GF
Sbjct: 268 ELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGF 327

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +  +    +++ ++M +K +
Sbjct: 328 CKCKKVDDAMKIFYEMSQKGL 348



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N +C++ +   A +   +M+  G +PD+V   +L  G    +++E A  + ++M   
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  ID LCKNG++  ++ LF  +       D+  Y+ L++GLC SGR   A
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDA 231

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  DV+T++ +I     +G+   A +L+ +M   ++APN+ T+ +LI+G
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F       +  ++ + M+ K   PD    + +++   K
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCK 329



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 120/235 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CKN  +  AL+L+ +M + GI+PDVV++ +L  GL    +   A  L   M +  
Sbjct: 183 IIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRK 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   ID   K G  +++ EL+  +  +    +I  Y+ LI+G C  G ++ A 
Sbjct: 243 IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEAR 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ +       DVV Y+ +I+G     ++D A  +F +M +  +  N IT+ TLI GF
Sbjct: 303 QMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGF 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
            ++ +P+   E+   M  + V P+    ++++  L  N     +L  F   +++E
Sbjct: 363 GQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C +     A +L   M  + IKPDV+  N L     +  +   A +L++EM R  
Sbjct: 218 LVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMS 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  I+G C  G + E+ ++F  +    C  D+ AY+ LI+G CK  +++ A+
Sbjct: 278 IAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAM 337

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ + +  L  + +TY+ +I G    G+ + A ++F  M    V PN+ T+  L+H  
Sbjct: 338 KIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCL 397

Query: 182 IRINEPSKVIELLHKMKEK---NVMPDASIVSIVVDLLAKN 219
               +  K + +   M+++    V P+    ++++  L  N
Sbjct: 398 CYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYN 438



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 7/206 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK K+++ A+ ++ EM  KG+  + + + TL  G  ++ +   A ++F  M   G
Sbjct: 323 LINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG 382

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-----IQAYSCLIDGLCKSGR 116
           V  + RTY + +  LC NG + +++ +F  ++  K E+D     I  Y+ L+ GLC +G+
Sbjct: 383 VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ--KREMDGVAPNIWTYNVLLHGLCYNGK 440

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           LE AL +F  + +  +   ++TY+I+I G+   G++  A +LF  +    V PNV+T+ T
Sbjct: 441 LEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTT 500

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNV 202
           +I G  R     +   L  KMKE  V
Sbjct: 501 MISGLFREGLKHEAHVLFRKMKEDGV 526



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI G+ +  +   A  ++S M+S+G+ P++  +N L   L    +V++A  +F++MQ+  
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417

Query: 60  -DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
            DGVA +  TY + + GLC NG + +++ +F  +R  + ++ I  Y+ +I G+CK+G+++
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            A+ LF SLP   +  +VVTY+ MI GL+ +G   +AH LF  M+E+ V+
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K K+ +  +NL   +   G+  D+   N L     +  Q   A     +M + G
Sbjct: 78  LLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I+G C    + E++ +   +  +  + D+  Y+ +ID LCK+G +  AL
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL 197

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  DVV Y+ +++GL N G+   A  L   M +  + P+VITF  LI  F
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAF 257

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +     EL ++M   ++ P+
Sbjct: 258 VKEGKFLDAEELYNEMIRMSIAPN 281



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL+L++ M+     P ++    L   + ++ + +    L D +Q  GV+ D  T  + ++
Sbjct: 56  ALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMN 115

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C++     +      +  L  E DI  ++ LI+G C   R+E A+ + + +    +  
Sbjct: 116 CFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKP 175

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DVV Y+ +I  L  +G ++ A  LF  ME   + P+V+ + +L++G            LL
Sbjct: 176 DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLL 235

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
             M ++ + PD    + ++D   K
Sbjct: 236 RGMTKRKIKPDVITFNALIDAFVK 259



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 75/174 (43%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           Q   A  LF  M           +T  ++ + K       + L   L+I+    D+   +
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            L++  C+S +  +A      + +     D+VT++ +I+G     +M++A  +   M E 
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + P+V+ + T+I    +    +  + L  +M+   + PD  + + +V+ L  +
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNS 225



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 50/93 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C N ++E AL ++ +M  + +   ++ +  +  G+ +  +V+ A  LF  +   
Sbjct: 430 VLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSK 489

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           GV  +  TYT  I GL + G   E+  LFR ++
Sbjct: 490 GVKPNVVTYTTMISGLFREGLKHEAHVLFRKMK 522


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQR 59
           IL+   C+N  +  A  ++ EM S+G+ PD+V  + L IGL   +  +++A K F +M+ 
Sbjct: 364 ILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL-IGLLSKNGCLDQALKYFRDMKN 422

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+A D   YTI I G C+NG + E++++   +    C LD+  Y+ +++GLCK   L  
Sbjct: 423 AGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSE 482

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +    +  D  T++ +I+G   DG M+KA  LF  M +  + P+V+T+ TLI 
Sbjct: 483 ADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 542

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           GF + +E  KV EL + M  + + P+
Sbjct: 543 GFCKGSEMEKVNELWNDMISRRIYPN 568



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+N  +  AL +  EML +G   DVV +NT+  GL +   +  A +LF EM   
Sbjct: 434 ILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTER 493

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I+G  K+G + ++V LF  +     + D+  Y+ LIDG CK   +E  
Sbjct: 494 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 553

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL++ +    +  + ++Y I+I+G  N G + +A  L+ +M E      +IT  T++ G
Sbjct: 554 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 613

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + R     K  E L  M  K ++PD    + +++   K E
Sbjct: 614 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 653



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  +   A  +  EML  G+ PD   +N L +       +  A ++FDEM   G
Sbjct: 330 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  I  L KNG + ++++ FR ++      D   Y+ LI G C++G +  AL
Sbjct: 390 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     V DVVTY+ +++GL  +  + +A +LF +M E  V P+  TF TLI+G+
Sbjct: 450 KVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +K + L   M ++N+ PD    + ++D   K
Sbjct: 510 SKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 546



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 5/233 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY K+  +  A+ L+  M+ + +KPDVV +NTL  G  +  ++E+  +L+++M    
Sbjct: 505 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 564

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y I I+G C  G + E+  L+  +     E  I   + ++ G C++G    A 
Sbjct: 565 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 624

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E   ++    +V D +TY+ +I+G   +  MD+A  L   ME + + P+VIT+  +++GF
Sbjct: 625 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 684

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP-SFTVHE 233
            R     +   ++ KM E+ V PD S  + +++      ++ N+L  +F VH+
Sbjct: 685 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLIN----GHVTQNNLKEAFRVHD 733



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 115/221 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CKN++IE   +  S+M  KG+ PDVV +NTL         +E AF+L D M   
Sbjct: 259 IMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK 318

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I+GLCK G  + +  +   +  +    D   Y+ L+   C++  +  A
Sbjct: 319 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDA 378

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +P   +V D+V++S +I  L  +G +D+A   F DM+   +AP+ + +  LI G
Sbjct: 379 ERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 438

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F R    S+ +++  +M E+  + D    + +++ L K ++
Sbjct: 439 FCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 479



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 2/209 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI    KN  ++ AL  + +M + G+ PD VI+  L  G      +  A K+ DEM   G
Sbjct: 400 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 459

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK   + E+ ELF  +       D   ++ LI+G  K G +  A+
Sbjct: 460 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAV 519

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  L  DVVTY+ +I G     +M+K ++L+ DM    + PN I++G LI+G+
Sbjct: 520 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 579

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
             +   S+   L  +M EK    +A+I++
Sbjct: 580 CNMGCVSEAFRLWDEMVEKGF--EATIIT 606



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  E+E    L+++M+S+ I P+ + +  L  G   +  V  AF+L+DEM   G
Sbjct: 540 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A   T    + G C+ G  V++ E    + +     D   Y+ LI+G  K   ++ A 
Sbjct: 600 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 659

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    L+ DV+TY+++++G    G+M +A  + L M E  V P+  T+ +LI+G 
Sbjct: 660 ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGH 719

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +  N   +   +  +M ++  +PD
Sbjct: 720 VTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y + +++      +  + SKG+   +   N+L  GL ++  V+ A++++ E+ R 
Sbjct: 189 LLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRS 248

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T  I I+ LCKN  I  +      +       D+  Y+ LI+  C+ G LE A
Sbjct: 249 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 308

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL  S+    L   V TY+ +I+GL   G+  +A  +  +M +  ++P+  T+  L+  
Sbjct: 309 FELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 368

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R +       +  +M  + V+PD    S ++ LL+KN
Sbjct: 369 CCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 407



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K   ++ A  +Y E++  G++ +V   N +   L +  ++E       +M+  G
Sbjct: 225 LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I+  C+ G + E+ EL  ++     +  +  Y+ +I+GLCK+G+   A 
Sbjct: 285 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 344

Query: 122 ELFHSLPRGVLVADVVTYSI-MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +   + +  +  D  TY+I ++    ND  MD A  +F +M    V P++++F  LI  
Sbjct: 345 GVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGL 403

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             +     + ++    MK   + PD  I +I++    +N +
Sbjct: 404 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 444



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 37/67 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG+ +   ++ A  +  +M+ +G+ PD   + +L  G    + ++ AF++ DEM + 
Sbjct: 679 VILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 738

Query: 61  GVAADTR 67
           G   D +
Sbjct: 739 GFVPDDK 745



 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query: 83  VESVELFRTLRIL--KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
           V  VE+  +L +    C  +   +  L+    ++ +L    E F  L    L   +   +
Sbjct: 164 VSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACN 223

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            ++ GL   G +D A +++ ++  + V  NV T   +I+   +  +       L  M+EK
Sbjct: 224 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 283

Query: 201 NVMPDASIVSIVVDLLAK 218
            V PD    + +++   +
Sbjct: 284 GVFPDVVTYNTLINAYCR 301


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+   I+ A  ++ EML  GI P VV ++T+  GLF   +   A +L+  M   G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y I ++GL KN  + E+ +LF++L     +L+I  ++ +I  L KSGR E A+
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAM 678

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++    LV DV TY ++   L  +G +++  DLF  ME++   PN      L+   
Sbjct: 679 HLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRL 738

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI--SLNSLP 227
           +   + ++    L K+ EKN   +AS  ++++ LL+++E      SLP
Sbjct: 739 LHRGDITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLP 786



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E A   Y EML++GI+PDVV  NT+   L    QV +A +L D M+R G
Sbjct: 454 LVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG 513

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +YT  I G C  G I E+ +    +  +  + D   Y+ L+ G C++GR++ A 
Sbjct: 514 TRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAY 573

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + R  +   VVTYS ++HGL+   +  +A +L+L+M  +    N+  +  +++G 
Sbjct: 574 GVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGL 633

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N   +  +L   +  K+   + +  +I++  L K+
Sbjct: 634 SKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKS 671



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+    +++ A NL+ EM+ +GI+P+VV + T+  GL +   V+RA  +F +M   G
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I G    G   E V +   +     + D   Y  L++ LC +GR   A 
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREAR 328

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+ R  +  +V  Y I+IHG    G + + HDL   M EN ++P+   F  +   +
Sbjct: 329 FFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAY 388

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + + +KMK++ + PD      ++D L K
Sbjct: 389 AKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCK 425



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L+ G+C  K  E AL L   M     +   P+VV + T+  G F   QV++A+ LF EM 
Sbjct: 171 LLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMM 230

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+  +  TYT  IDGLCK   +  +  +F+ +     + D   Y+CLI G    G+ +
Sbjct: 231 DRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWK 290

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             + +   +    L  D  TY  +++ L N+G+  +A   F  M    + PNV  +G LI
Sbjct: 291 EVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILI 350

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           HG+      S++ +LL+ M E  + PD  I +I+    AK  +   ++  F   ++Q
Sbjct: 351 HGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A+  +++M+++G+ P++ + N+L  GL  + + E+A + + EM   G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   +   +  LC  G ++++  L   +  +    D+ +Y+ LI G C  GR++ A 
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAA 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +    L  D  TY+ ++HG    G++D A+ +F +M  N + P V+T+ T++HG 
Sbjct: 539 KSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGL 598

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                 S+  EL   M       +  I +I+++ L+KN
Sbjct: 599 FTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKN 636



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 11  EIEGALNLYSEMLSK---GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           E E  ++L++ M+ +    + PD+  ++ L      + ++E  F  F  + + G   +  
Sbjct: 71  ESELVVSLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNI 130

Query: 68  TYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
                + GLC    + E+++ L + +  L C  D+ +Y+ L+ G C   R E ALEL H 
Sbjct: 131 VINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHM 190

Query: 127 LPRG---VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +          +VV+Y+ +I+G + +GQ+DKA++LFL+M +  + PNV+T+ T+I G  +
Sbjct: 191 MADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCK 250

Query: 184 INEPSKVIELLHKMKEKNVMPD 205
                +   +  +M +K V PD
Sbjct: 251 AQVVDRAEGVFQQMIDKGVKPD 272



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           ILI  +C+   +E     +  +L  G + + ++ N L  GL +  ++  A   L   M  
Sbjct: 99  ILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPE 158

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   D  +Y   + G C      E++EL   +   +   C  ++ +Y+ +I+G    G+
Sbjct: 159 LGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQ 218

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A  LF  +    +  +VVTY+ +I GL     +D+A  +F  M +  V P+  T+  
Sbjct: 219 VDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNC 278

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LIHG++ I +  +V+ +L +M    + PD      +++ L  N
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNN 321



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 36/256 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  ++ +M+ KG+KPD   +N L  G   I + +   ++ +EM   G
Sbjct: 244 VIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
           +  D  TY   ++ LC NG   E+   F ++     + ++  Y  LI G    G L    
Sbjct: 304 LKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMH 363

Query: 118 -------------------------------EIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                          + A+ +F+ + +  L  DVV +  +I  L
Sbjct: 364 DLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDAL 423

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A   F  M    VAPN+  F +L++G   +++  K  E   +M  + + PD 
Sbjct: 424 CKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDV 483

Query: 207 SIV-SIVVDLLAKNEI 221
               +I+ +L  K ++
Sbjct: 484 VFFNTILCNLCTKGQV 499



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY     +    +L + M+  G+ PD  I N +F    +   ++ A  +F++M++ 
Sbjct: 348 ILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D   +   ID LCK G + ++V  F  +       +I  ++ L+ GLC   + E A
Sbjct: 408 GLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKA 467

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E +  +    +  DVV ++ ++  L   GQ+ KA  L   ME     P+VI++ TLI G
Sbjct: 468 KEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGG 527

Query: 181 FI---RINEPSKVIELL 194
                RI+E +K ++++
Sbjct: 528 HCLVGRIDEAAKSLDVM 544



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 93/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  C N     A   +  M+ KGIKP+V I+  L  G      +     L + M  +G
Sbjct: 314 LLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   + I      K   I E++ +F  ++      D+  +  LID LCK GR++ A+
Sbjct: 374 LSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAV 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    +  ++  ++ +++GL    + +KA + + +M    + P+V+ F T++   
Sbjct: 434 LKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNL 493

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  K   L+  M+     PD
Sbjct: 494 CTKGQVMKAQRLIDLMERVGTRPD 517



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG  KN  ++ A  L+  + SK  + ++   N +   LF+  + E A  LF  +   
Sbjct: 628 IILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSY 687

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+  D  TY +  + L + GY+ E  +LF  +
Sbjct: 688 GLVPDVFTYCLIAENLIEEGYLEEFDDLFSAM 719


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQR 59
           ILI G+C+  EIE AL +Y EM  +GIKPD+V  + L IGLF    +++ A     EM+ 
Sbjct: 205 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL-IGLFARRGKMDHAMAYLREMRC 263

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT+ I G C+ G + +++ +   +    C  D+  Y+ L++GLCK  RL  
Sbjct: 264 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 323

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L + +    +  D+ T++ +IHG   +G++DKA  LF  M    + P+++T+ TLI 
Sbjct: 324 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 383

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  R  +  K  +L   M  + + P+    SI++D
Sbjct: 384 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 418



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C+   +  AL +  EM+  G  PDVV +NTL  GL +  ++  A  L +EM+  
Sbjct: 275 MVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 334

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I G C  G + ++++LF T+   +   DI  Y+ LIDG+C+ G L+ A
Sbjct: 335 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 394

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  + VTYSI+I      GQ++ A     +M    + PN++T+ ++I G
Sbjct: 395 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 454

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R    SK  + L KM    V PD
Sbjct: 455 YCRSGNVSKGQKFLQKMMVNKVSPD 479



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 129/254 (50%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++   +  + E A+ L   M+SKG+KP +V +N++  GL      ++A+++F EM   
Sbjct: 135 VMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDF 194

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D R++TI I G C+ G I E++++++ +R    + D+ ++SCLI    + G+++ A
Sbjct: 195 GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHA 254

Query: 121 ------LELFHSLPRGVL-----------------------------VADVVTYSIMIHG 145
                 +  F  +P GV+                             + DVVTY+ +++G
Sbjct: 255 MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 314

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  + ++  A  L  +M E  V P++ TF TLIHG+    +  K ++L   M  + + PD
Sbjct: 315 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 374

Query: 206 ASIVSIVVDLLAKN 219
               + ++D + + 
Sbjct: 375 IVTYNTLIDGMCRQ 388



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ YCK  E +    + SEM  + + PDVV HN +    F     E A  L D M   
Sbjct: 100 IMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 159

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   + GLC++G   ++ E+F+ +       D+++++ LI G C+ G +E A
Sbjct: 160 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEA 219

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+++  +    +  D+V++S +I      G+MD A     +M    + P+ + +  +I G
Sbjct: 220 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 279

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           F R    S  + +  +M     +PD    + +++ L K    L++
Sbjct: 280 FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 324



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 4/203 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+  +++ A +L+ +M S+ I P+ V ++ L     E  QVE AF   DEM   G
Sbjct: 381 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 440

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I G C++G + +  +  + + + K   D+  Y+ LI G  K  ++  A 
Sbjct: 441 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 500

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + + +  +  DVVTY+++I+G    G + +A  +F  M    + P+  T+ ++I+G 
Sbjct: 501 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 560

Query: 182 IRINEPSKVI----ELLHKMKEK 200
           +      +      E+L + KEK
Sbjct: 561 VTAGNSKEAFQLHDEMLQRGKEK 583



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+  ++E A     EM++KGI P+++ +N++  G      V +  K   +M  +
Sbjct: 415 ILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN 474

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ D  TY   I G  K   + ++ +L   +   K + D+  Y+ LI+G    G ++ A
Sbjct: 475 KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 534

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----EENAVAPNVITF 174
             +F  +    +  D  TY  MI+G    G   +A  L  +M    +E   A   + F
Sbjct: 535 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTVQF 592



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 35/176 (19%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           + G+   + + +R +     E++    + ++   CK+   +    +   + +  +  DVV
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131

Query: 138 TYSIMI-----------------------------------HGLYNDGQMDKAHDLFLDM 162
           T+++M+                                    GL   G  DKA ++F +M
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 191

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  VAP+V +F  LI GF R+ E  + +++  +M+ + + PD    S ++ L A+
Sbjct: 192 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 247


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C + ++  A+ ++ E + KG K  ++++NTL  GL +   V +A +L  +M   G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY + ++GLCK G + ++  +        C  DI  ++ LIDG CK   ++ A+
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+  ++    +  DV+TY+ +++GL    ++D   D F  M E    PN+IT+  LI  F
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESF 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
            +  + S+ +EL  +MK + + PD  ++ +++  L +  E+
Sbjct: 542 CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGEL 582



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 13/244 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK   +  A  + ++ ++KG  PD+   NTL  G  +   +++A ++ D M   
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   ++GLCK   +   V+ F+ +    C  +I  Y+ LI+  CK  ++  A
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIH 179
           +ELF  +    L  D+VT   +I GL ++G++DKA++LF+ +E E   + +   F  +I+
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN------------EISLNSLP 227
            F      S   +L HKM   +  PD     +++D   K              IS   +P
Sbjct: 611 AFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVP 670

Query: 228 SFTV 231
           SFT 
Sbjct: 671 SFTT 674



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 108/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   ++ A  +  + + KG  PD   +++L  GL     + RA  +F E    G
Sbjct: 327 IINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKG 386

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y   + GL K G ++++++L + +    C  DI  Y+ +++GLCK G L  A 
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDAN 446

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +       + D+ T++ +I G      MDKA ++   M  + + P+VIT+ TL++G 
Sbjct: 447 GILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGL 506

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +   V++    M EK   P+    +I+++   K+ 
Sbjct: 507 CKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDR 545



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 36/240 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK + ++ A+ +   MLS GI PDV+ +NTL  GL +  +++     F  M   G
Sbjct: 467 LIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I I+  CK+  + E++ELF+ ++      DI     LI GLC +G L+ A 
Sbjct: 527 CTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAY 586

Query: 122 ELF------------------------------------HSLPRGVLVADVVTYSIMIHG 145
           ELF                                    H +       D  TY +MI  
Sbjct: 587 ELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDS 646

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G +D AH   L+     + P+  T G +++     +  S+ + +++ M +  ++P+
Sbjct: 647 YCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 37/253 (14%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I+G+ K N +IE A +L+ EML +GI PD++  N L   L +   V+ + KLF ++ + 
Sbjct: 187 VISGFYKENCQIE-AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-----------------------RILKC 97
           GV  +  T+ IFI GLC+ G I E+  L  ++                       ++++ 
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 98  ELDIQ------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           E  +              Y+ +I+G CK+G ++ A ++         + D  TYS +I+G
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLING 365

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L NDG M++A  +F +  E     ++I + TL+ G  +     + ++L+  M E    PD
Sbjct: 366 LCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 206 ASIVSIVVDLLAK 218
               ++VV+ L K
Sbjct: 426 IWTYNLVVNGLCK 438



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 104/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I G C+   I+ A  L   ++S+G+ PDV+ +NTL  G  +  ++  A     +M   
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I+G CK G +  + ++ R         D   YS LI+GLC  G +  A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F+          ++ Y+ ++ GL   G + +A  L  DM E+  +P++ T+  +++G
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++   S    +L+    K  +PD    + ++D   K
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 102/219 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  +C       AL L + M  +G + + V +  +  G ++ +    A+ LFDEM + 
Sbjct: 151 IRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQ 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+   I  LCK G + ES +LF  +       ++  ++  I GLC+ G ++ A
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  S+    L  DV++Y+ +I G     ++ +A      M  + V PN  T+ T+I+G
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +        ++L     K  +PD    S +++ L  +
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++  Y +  +++ A+N++  M     +P V  +N +   L E     +A K++  M+  G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+TI +   C  G    ++ L   +    CE +  +Y  +I G  K      A 
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +  D++T++ +IH L   G + ++  LF  + +  V PN+ TF   I G 
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     +   LL  +  + + PD
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPD 285



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 84/173 (48%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +V+ A  +F+ M         ++Y   ++ L + GY  ++ +++  ++ +    D+  ++
Sbjct: 91  KVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHT 150

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
             +   C +GR   AL L +++P      + V+Y  +I G Y +    +A+ LF +M + 
Sbjct: 151 IRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQ 210

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + P+++TF  LIH   +     +  +L  K+ ++ V P+    +I +  L +
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCR 263


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ +  ++    NL+ EM+S+G+KPD V + TL     +  ++  AF L +EM + G
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG 463

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDGLCK+G +  + EL   +R    +L++  Y+ +++G+CK+G +E A+
Sbjct: 464 MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAI 523

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D +TY+ +I      G +DKAH L  +M +  + P V+TF  L++GF
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
             +        LL  M EK ++PDA    I  + L K     NS+ + T
Sbjct: 584 CMLGMLEDGDRLLGWMLEKGIVPDA----ITYNTLMKQHCIRNSMNTTT 628



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K   +  A   + EMLSK I PD + + TL  G  +  +V     LF EM   G
Sbjct: 369 LIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID  CK G +V +  L   +  +    +I  Y  LIDGLCK G L+ A 
Sbjct: 429 LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTAN 488

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  L  +V  Y+ M++G+   G +++A  L  +ME   + P+ IT+ T+I  +
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R+ +  K  +LL +M ++ + P     +++++
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 110/212 (51%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  +   A  +  EM+S+ I PD V++ TL  G F++  V  A K FDEM    ++ D 
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDY 398

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I G  + G ++E   LF  +     + D   Y+ LID  CK+G +  A  L + 
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  +  ++VTY  +I GL   G++D A++L  +M +  +  NV  + ++++G  +   
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + I+L+ +M+   + PDA   + V+D   +
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 117/212 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK  E+  A +L++EM+  G+ P++V +  L  GL +  +++ A +L DEM++ G
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   ++G+CK G I ++++L + + +   + D   Y+ +ID  C+ G ++ A 
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L   VVT++++++G    G ++    L   M E  + P+ IT+ TL+   
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N  +   ++  +M+ + V PD++  +I++
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILI 650



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC   E++ AL L  +M  KG+KP+   +N++ + L +I +   A K+  EM    
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQK 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  I G  K G++  + + F  +   K   D   Y+ LI G  + G++    
Sbjct: 359 IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQ 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +    L  D VTY+ +I      G+M  A  L  +M +  + PN++T+G LI G 
Sbjct: 419 NLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGL 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E     ELL +M++K +  +  I + +V+ + K
Sbjct: 479 CKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ E++ A  L  EM  KG++ +V I+N++  G+ +   +E+A KL  EM+  G
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID  C+ G I ++ +L + +     +  +  ++ L++G C  G LE   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +V D +TY+ ++        M+    ++  M    VAP+  T+  LI G 
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +   L  +M EK  +P  +  + ++    K +
Sbjct: 654 CKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKK 692



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I   C+  +++ A  L  +M  +   PDVV ++T+  G   + ++++A KL D+MQ  
Sbjct: 263 IIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIK 322

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I  LCK G   E+ ++ R +   K   D   Y+ LI G  K G +  A
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +    +  D +TY+ +I G    G++ +  +LF +M    + P+ +T+ TLI  
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +  E      L ++M +  + P+      ++D L K+
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 12/224 (5%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           IE A+ ++ E    GI  +   +N +   L  + +V+ A +L  +M       D  +Y+ 
Sbjct: 242 IEMAIKVFCEY---GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYST 298

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            IDG C  G + ++++L   ++I   + +   Y+ +I  LCK G+   A ++   +    
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQK 358

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           ++ D V Y+ +IHG +  G +  A+  F +M    ++P+ IT+ TLI GF    +  KVI
Sbjct: 359 IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF---GQGGKVI 415

Query: 192 E---LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
           E   L H+M  + + PD    + ++D+  K    +N   +F++H
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVN---AFSLH 456



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YC+  +I+ A  L  EML +G++P VV  N L  G   +  +E   +L   M   G
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +   C    +  + ++++ +R      D   Y+ LI G CK+  L+ A 
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAW 663

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            L+  +     V  V +Y+ +I   Y   ++ +A +LF +M  + +  +
Sbjct: 664 FLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVAD 712



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 74/153 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C    +E    L   ML KGI PD + +NTL       + +    K++  M+  
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D+ TY I I G CK   + E+  L++ +        + +Y+ LI    K  ++  A
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEA 697

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
            ELF  +    LVAD   Y+  +   Y +G ++
Sbjct: 698 RELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   +E     + EM ++G +PD V +  L  G  +   + +A +++ +M + G
Sbjct: 228 IIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSG 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T TY I +DGLCK G + E+   F  +    C   +  YS L+DG C  G +  A+
Sbjct: 288 TVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAV 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       ++V+Y+I+I GL   G++ KA+  F  + +  + P+V TF   +HG 
Sbjct: 348 ELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGL 407

Query: 182 I-RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R++  S  +EL   M  +   P+    SI++D + +
Sbjct: 408 CQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICR 445



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G CK + ++ A  L  +M  K   P  V +  L  GL +  +++ A  + ++M   
Sbjct: 47  VFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEK 106

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +   +TYT+ IDGL K G + E+  +F  +    C  D   Y+ LI GLCKSG+ E A
Sbjct: 107 GNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEA 166

Query: 121 LELFHSLP----RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFG 175
             L+            V DVVTY+ +I GL   G++ +A  +F D   E    P+ +T+ 
Sbjct: 167 YALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYT 226

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++I G  ++    +  E  H+M+ +   PDA   + ++D   K ++
Sbjct: 227 SIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKM 272



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GIKPDVVIHNTLFIGLFEIHQVERAFKLFD-E 56
           LI G CK+ + E A  LY E  ++       PDVV + +L  GL +  ++  A ++FD E
Sbjct: 153 LIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDE 212

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
               G   D  TYT  IDGLCK G + E  E F  +R    E D   Y+ LIDG  K+  
Sbjct: 213 AVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKM 272

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +  A  ++  + +   V   VTY+I++ GL   G++ +A+  FL MEE      V+T+  
Sbjct: 273 IPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSA 332

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           L+ GF      S  +EL  +M ++   P+    +I++  L +
Sbjct: 333 LMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 374



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 114/204 (55%), Gaps = 2/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C    +  A+ L+  ML +G +P++V +N +  GL    ++ +A+  F+++ +  
Sbjct: 333 LMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRR 392

Query: 62  VAADTRTYTIFIDGLCKN-GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D  T+  F+ GLC+    + + VELF ++       ++ +YS L+DG+C++G LE+A
Sbjct: 393 LCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVA 452

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+F  +    +  DVV ++ +I  L   G++D+A ++F ++E  + AP+  ++ +L+ G
Sbjct: 453 LEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDG 511

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             R     +   L   MK +   P
Sbjct: 512 LSRCERMEEARLLSFHMKLQGCAP 535



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYS-EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G CK   I  A  ++  E + +G  PD V + ++  GL ++ +VE   + F EM+  
Sbjct: 192 LIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   IDG  K   I ++  ++R +      +    Y+ ++DGLCK+GR+  A
Sbjct: 252 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F ++     VA VVTYS ++ G  ++G +  A +LF  M +    PN++++  +I G
Sbjct: 312 YATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRG 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             R  + +K      K+ ++ + PD
Sbjct: 372 LCRAGKLAKAYFYFEKLLQRRLCPD 396



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 7/240 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K   ++ A+ +  +M+ KG  P +  +  +  GL +  +VE A ++F +M  +G
Sbjct: 83  LVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNG 142

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL----DIQAYSCLIDGLCKSGRL 117
              D   YT  I GLCK+G   E+  L++     K       D+  Y+ LIDGLCK+GR+
Sbjct: 143 CRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRI 202

Query: 118 EIALELF--HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
             A ++F   ++ RG  + D VTY+ +I GL   G++++  + F +M      P+ +T+ 
Sbjct: 203 LEARQVFDDEAVERG-FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYA 261

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            LI GF++     K   +  +M +   +      +I++D L K      +  +F   E +
Sbjct: 262 ALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEER 321



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 4/194 (2%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           PD+V    +  GL    +++ AF + +   R G   D  TY +FIDGLCK   + ++ +L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
            + +   KC      Y+ L+DGL K+GRL+ A+ +   +        + TY+++I GL  
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK----NVMP 204
            G++++A  +F+DM  N   P+   +  LI G  +  +P +   L  +   +      +P
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 205 DASIVSIVVDLLAK 218
           D    + ++D L K
Sbjct: 185 DVVTYTSLIDGLCK 198



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK   +  A   +  M  +G    VV ++ L  G      V  A +LF  M   
Sbjct: 297 IILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDR 356

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI- 119
           G   +  +Y I I GLC+ G + ++   F  L   +   D+  ++  + GLC+  RL+  
Sbjct: 357 GCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ--RLDTV 414

Query: 120 --ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              +ELF S+       ++ +YSI++ G+   G ++ A ++F +M    VAP+V+ F TL
Sbjct: 415 SDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTL 474

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I          + +E+  ++ E+   PDA     ++D L++ E
Sbjct: 475 IRWLCIAGRVDEALEVFREL-ERRSAPDAWSYWSLLDGLSRCE 516



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%)

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           + D   +T+ I+GLC+   + E+  +        CE D   Y+  IDGLCK+ R++ A +
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L   +     +   VTY+ ++ GL   G++D+A  +   M E   +P + T+  +I G  
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +     +   +   M      PDA + + ++  L K+
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKS 160



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%)

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           + C  D+ A++ +I+GLC+  RL+ A  +     R     D VTY++ I GL    ++D 
Sbjct: 1   MPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDD 60

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A  L   M+E    P  +T+  L+ G ++     + + +L +M EK   P     ++V+D
Sbjct: 61  AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVID 120

Query: 215 LLAK 218
            L+K
Sbjct: 121 GLSK 124


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ +  ++    NL+ EM+S+G+KPD V + TL     +  ++  AF L +EM + G
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG 463

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDGLCK+G +  + EL   +R    +L++  Y+ +++G+CK+G +E A+
Sbjct: 464 MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAI 523

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D +TY+ +I      G +DKAH L  +M +  + P V+TF  L++GF
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
             +        LL  M EK ++PDA    I  + L K     NS+ + T
Sbjct: 584 CMLGMLEDGDRLLGWMLEKGIVPDA----ITYNTLMKQHCIRNSMNTTT 628



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K   +  A   + EMLSK I PD + + TL  G  +  +V     LF EM   G
Sbjct: 369 LIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID  CK G +V +  L   +  +    +I  Y  LIDGLCK G L+ A 
Sbjct: 429 LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTAN 488

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  L  +V  Y+ M++G+   G +++A  L  +ME   + P+ IT+ T+I  +
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R+ +  K  +LL +M ++ + P     +++++
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 110/212 (51%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  +   A  +  EM+S+ I PD V++ TL  G F++  V  A K FDEM    ++ D 
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDY 398

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I G  + G ++E   LF  +     + D   Y+ LID  CK+G +  A  L + 
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  +  ++VTY  +I GL   G++D A++L  +M +  +  NV  + ++++G  +   
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + I+L+ +M+   + PDA   + V+D   +
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 117/212 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK  E+  A +L++EM+  G+ P++V +  L  GL +  +++ A +L DEM++ G
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   ++G+CK G I ++++L + + +   + D   Y+ +ID  C+ G ++ A 
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L   VVT++++++G    G ++    L   M E  + P+ IT+ TL+   
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N  +   ++  +M+ + V PD++  +I++
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILI 650



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC   E++ AL L  +M  KG+KP+   +N++ + L +I +   A K+  EM    
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQK 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  I G  K G++  + + F  +   K   D   Y+ LI G  + G++    
Sbjct: 359 IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQ 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +    L  D VTY+ +I      G+M  A  L  +M +  + PN++T+G LI G 
Sbjct: 419 NLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGL 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E     ELL +M++K +  +  I + +V+ + K
Sbjct: 479 CKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ E++ A  L  EM  KG++ +V I+N++  G+ +   +E+A KL  EM+  G
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID  C+ G I ++ +L + +     +  +  ++ L++G C  G LE   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +V D +TY+ ++        M+    ++  M    VAP+  T+  LI G 
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   L  +M EK  +P  +  + ++    K
Sbjct: 654 CKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYK 690



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I   C+  +++ A  L  +M  +   PDVV ++T+  G   + ++++A KL D+MQ  
Sbjct: 263 IIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIK 322

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I  LCK G   E+ ++ R +   K   D   Y+ LI G  K G +  A
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +    +  D +TY+ +I G    G++ +  +LF +M    + P+ +T+ TLI  
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +  E      L ++M +  + P+      ++D L K+
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 12/224 (5%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           IE A+ ++ E    GI  +   +N +   L  + +V+ A +L  +M       D  +Y+ 
Sbjct: 242 IEMAIKVFCEY---GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYST 298

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            IDG C  G + ++++L   ++I   + +   Y+ +I  LCK G+   A ++   +    
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQK 358

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           ++ D V Y+ +IHG +  G +  A+  F +M    ++P+ IT+ TLI GF    +  KVI
Sbjct: 359 IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF---GQGGKVI 415

Query: 192 E---LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
           E   L H+M  + + PD    + ++D+  K    +N   +F++H
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVN---AFSLH 456



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 79/169 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ YC+  +I+ A  L  EML +G++P VV  N L  G   +  +E   +L   M   G
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +   C    +  + ++++ +R      D   Y+ LI G CK+  L+ A 
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAW 663

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            L+  +     V  V +Y+ +I   Y   +  +A +LF +M  + +  +
Sbjct: 664 FLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVAD 712



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C    +E    L   ML KGI PD + +NTL       + +    K++  M+  
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D+ TY I I G CK   + E+  L++ +        + +Y+ LI    K  +   A
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEA 697

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
            ELF  +    LVAD   Y+  +   Y +G ++
Sbjct: 698 RELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+   K  ++E A     E+  +G+KPD V      +G  +  ++  A K FDEM   G
Sbjct: 514 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 573

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT+ I+G  K G ++E++ +FR L  L    D+Q  S  I GL K+GR++ AL
Sbjct: 574 LMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 633

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L    LV DV TYS +I G    G+++KA +L  +M    +APN+  +  L+ G 
Sbjct: 634 KVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGL 693

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +  +  +L   M EK + PD+   S ++D   K+E
Sbjct: 694 CKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 732



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 110/212 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K   +  AL+++  + + G+ PDV   +    GL +  +V+ A K+F E++  
Sbjct: 583 VLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 642

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+  I G CK G + ++ EL   + +     +I  Y+ L+DGLCKSG ++ A
Sbjct: 643 GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 702

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +P   L  D VTYS MI G      + +A  LF +M    V P+   +  L+HG
Sbjct: 703 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 762

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             +  +  K + L  +M +K      S  +++
Sbjct: 763 CCKEGDMEKAMNLFREMLQKGFATTLSFNTLI 794



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I GY K  ++  A   + EML  G+ P+  ++  L  G F+   +  A  +F  +   G
Sbjct: 549 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALG 608

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D +T + FI GL KNG + E++++F  L+      D+  YS LI G CK G +E A 
Sbjct: 609 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 668

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  ++  Y+ ++ GL   G + +A  LF  M E  + P+ +T+ T+I G+
Sbjct: 669 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 728

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    ++   L H+M  K V P + + + +V
Sbjct: 729 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 760



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK++ +  A +L+ EM SKG++P   ++N L  G  +   +E+A  LF EM + G
Sbjct: 724 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 783

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A  T ++   IDG CK+  I E+ +LF+ +   +   D   Y+ +ID  CK+G++E A 
Sbjct: 784 FAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 842

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L+ D VTY+ +++G    GQ  +   LF  M    V P+ +T+G +I+  
Sbjct: 843 LLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAH 902

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + +   +  +L  ++  K ++   +I  +++  L K E
Sbjct: 903 CKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 941



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 110/205 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK  ++ GA  +  EM  KG+ P+  I++ +  G+ ++  ++ A +L   M   G
Sbjct: 234 LVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TYTI   GLC+   + E+   F  ++    + D  A S LIDG  + G ++  L
Sbjct: 294 LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  +++TY+++IHGL   G+M+KA ++   M      PN  TF  LI G+
Sbjct: 354 RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGY 413

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R +   + +ELL +M+++N++P A
Sbjct: 414 CREHNMGRALELLDEMEKRNLVPSA 438



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C  K++  A  L  +M   G+KP+VV+++ L +      ++E A +L D M   G
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSG 503

Query: 62  VA-----------------------------------ADTRTYTIFIDGLCKNGYIVESV 86
           VA                                    D  T+  FI G  K G + E+ 
Sbjct: 504 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 563

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + F  +       +   Y+ LI+G  K+G L  AL +F  L    ++ DV T S  IHGL
Sbjct: 564 KYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGL 623

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++ +A  +F +++E  + P+V T+ +LI GF +  E  K  EL  +M  K + P+ 
Sbjct: 624 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 683

Query: 207 SIVSIVVDLLAKN 219
            I + +VD L K+
Sbjct: 684 FIYNALVDGLCKS 696



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 102/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+  G C+ K +  A   + EM   G+KPD    + L  G      ++   ++ D M   
Sbjct: 303 IITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSC 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + I GLCK G + ++ E+ + +  L C+ + + +  LI+G C+   +  A
Sbjct: 363 GIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   + +  LV   V+Y  MI+GL +   +  A+ L   M  + + PNV+ +  LI  
Sbjct: 423 LELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMA 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +       +   LL  M    V PD    + ++  L+K
Sbjct: 483 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 520



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+  +I+ A+ L   M  KG+ P+   +  +  GL    ++  A   F+EMQ+ 
Sbjct: 268 LVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKT 327

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D    +  IDG  + G I E + +   +      +++  Y+ LI GLCK G++E A
Sbjct: 328 GLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKA 387

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   +       +  T+ ++I G   +  M +A +L  +ME+  + P+ +++G +I+G
Sbjct: 388 AEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMING 447

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                + S   +LL KM    + P+  + SI++
Sbjct: 448 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSILI 480



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 105/205 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +  +I+  L +   M+S GI  +++ +N L  GL +  ++E+A ++   M   G
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLG 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++RT+ + I+G C+   +  ++EL   +          +Y  +I+GLC    L +A 
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +VV YSI+I    ++G++++A  L   M  + VAP++  +  +I   
Sbjct: 459 KLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 518

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +  +  +    L +++ + + PDA
Sbjct: 519 SKAGKMEEASTYLLEIQGRGLKPDA 543



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 3/218 (1%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+GYCK+ +I+ A  L+ EM++K I PD V + T+     +  ++E A  LF EMQ   
Sbjct: 793  LIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN 852

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  DT TYT  + G  K G   E   LF  +     + D   Y  +I   CK   L  A 
Sbjct: 853  LIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 912

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L   +    ++     + ++I  L     + +A  L  +M E  + P++    TL+  F
Sbjct: 913  KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSF 972

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                +  +   +   +K   ++PD    + ++DL+  N
Sbjct: 973  HEAGKMDEATRVFEGVKSLGLVPD---TTTLIDLVNGN 1007



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y+ ML   +  DV  +  L   L +   +  A ++  EM   G+  +   Y++ I+G+C
Sbjct: 215 VYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMC 274

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           + G I E+VEL R++       +   Y+ +  GLC++ R+  A   F  + +  L  D  
Sbjct: 275 QVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYN 334

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
             S +I G   +G +D+   +   M    +  N+IT+  LIHG  +  +  K  E+L  M
Sbjct: 335 ACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM 394

Query: 198 KEKNVMPDASIVSIVVD 214
                 P++    ++++
Sbjct: 395 VTLGCKPNSRTFCLLIE 411



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 24/245 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ Y +   ++ A N++    +  I   ++  N+L   L +   +E  +K+++ M   
Sbjct: 163 ILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDA 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA-------YSCLIDGLCK 113
            +  D  TYT  +  LCK G      +L    R+L  E+D +        YS +I+G+C+
Sbjct: 223 KMGFDVYTYTYLVGALCKTG------DLRGAKRVL-IEMDEKGLNPNEFIYSLVIEGMCQ 275

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            G ++ A+EL  S+    LV +  TY+I+  GL    +M++A   F +M++  + P+   
Sbjct: 276 VGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNA 335

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
              LI GF+R  +  +V+ +      K+VM       I ++L+  N + ++ L  F   E
Sbjct: 336 CSALIDGFMREGDIDEVLRI------KDVMVSC---GIPINLITYN-VLIHGLCKFGKME 385

Query: 234 RQEEV 238
           +  E+
Sbjct: 386 KAAEI 390



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L+ GY K  +      L+ +M++KG+KPD V +  +     +   +  AFKL DE+   G
Sbjct: 863  LMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 922

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +      + + I  LCK   + E+ +L   +  L  +  + A + L+    ++G+++ A 
Sbjct: 923  MLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEAT 982

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
             +F  +    LV D  T   +++G  ND   + A +L
Sbjct: 983  RVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNL 1019



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 72/150 (48%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           + I ID   + G + E+  +F   +     + +   + L+  L K G +E+  ++++ + 
Sbjct: 161 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGML 220

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +  DV TY+ ++  L   G +  A  + ++M+E  + PN   +  +I G  ++ +  
Sbjct: 221 DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDID 280

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +EL   M EK ++P+    +I+   L +
Sbjct: 281 EAVELKRSMGEKGLVPNTYTYTIITAGLCR 310



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI   CK +++  A  L  EM   G+KP +   NTL     E  +++ A ++F+ ++  
Sbjct: 932  LLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSL 991

Query: 61   GVAADTRTYTIFIDG 75
            G+  DT T    ++G
Sbjct: 992  GLVPDTTTLIDLVNG 1006



 Score = 36.6 bits (83), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 46/110 (41%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++I  +CK   +  A  L  E++ KG+     IH+ L   L +   +  A KL DEM   
Sbjct: 897  LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGEL 956

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            G+          +    + G + E+  +F  ++ L    D      L++G
Sbjct: 957  GLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 1006


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQR 59
           ILI G+C+  EIE AL +Y EM  +GIKPD+V  + L IGLF    +++ A     EM+ 
Sbjct: 266 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL-IGLFARRGKMDHAMAYLREMRC 324

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT+ I G C+ G + +++ +   +    C  D+  Y+ L++GLCK  RL  
Sbjct: 325 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 384

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L + +    +  D+ T++ +IHG   +G++DKA  LF  M    + P+++T+ TLI 
Sbjct: 385 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 444

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  R  +  K  +L   M  + + P+    SI++D
Sbjct: 445 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 479



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C+   +  AL +  EM+  G  PDVV +NTL  GL +  ++  A  L +EM+  
Sbjct: 336 MVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 395

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I G C  G + ++++LF T+   +   DI  Y+ LIDG+C+ G L+ A
Sbjct: 396 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 455

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  + VTYSI+I      GQ++ A     +M    + PN++T+ ++I G
Sbjct: 456 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 515

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R    SK  + L KM    V PD
Sbjct: 516 YCRSGNVSKGQKFLQKMMVNKVSPD 540



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 129/254 (50%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++   +  + E A+ L   M+SKG+KP +V +N++  GL      ++A+++F EM   
Sbjct: 196 VMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDF 255

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D R++TI I G C+ G I E++++++ +R    + D+ ++SCLI    + G+++ A
Sbjct: 256 GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHA 315

Query: 121 ------LELFHSLPRGVL-----------------------------VADVVTYSIMIHG 145
                 +  F  +P GV+                             + DVVTY+ +++G
Sbjct: 316 MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 375

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  + ++  A  L  +M E  V P++ TF TLIHG+    +  K ++L   M  + + PD
Sbjct: 376 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435

Query: 206 ASIVSIVVDLLAKN 219
               + ++D + + 
Sbjct: 436 IVTYNTLIDGMCRQ 449



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ YCK  E +    + SEM  + + PDVV HN +    F     E A  L D M   
Sbjct: 161 IMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 220

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   + GLC++G   ++ E+F+ +       D+++++ LI G C+ G +E A
Sbjct: 221 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEA 280

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+++  +    +  D+V++S +I      G+MD A     +M    + P+ + +  +I G
Sbjct: 281 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 340

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           F R    S  + +  +M     +PD    + +++ L K    L++
Sbjct: 341 FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 385



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+  +++ A +L+ +M S+ I P+ V ++ L     E  QVE AF   DEM   G
Sbjct: 442 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 501

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I G C++G + +  +  + + + K   D+  Y+ LI G  K  ++  A 
Sbjct: 502 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 561

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + + +  +  DVVTY+++I+G    G + +A  +F  M    + P+  T+ ++I+G 
Sbjct: 562 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 621

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +      +  +L  +M ++   PD
Sbjct: 622 VTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+  ++E A     EM++KGI P+++ +N++  G      V +  K   +M  +
Sbjct: 476 ILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN 535

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ D  TY   I G  K   + ++ +L   +   K + D+  Y+ LI+G    G ++ A
Sbjct: 536 KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 595

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             +F  +    +  D  TY  MI+G    G   +A  L  +M +   AP+
Sbjct: 596 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 35/176 (19%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           + G+   + + +R +     E++    + ++   CK+   +    +   + +  +  DVV
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192

Query: 138 TYSIMI-----------------------------------HGLYNDGQMDKAHDLFLDM 162
           T+++M+                                    GL   G  DKA ++F +M
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 252

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  VAP+V +F  LI GF R+ E  + +++  +M+ + + PD    S ++ L A+
Sbjct: 253 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 308



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+  +  ++ A  ++ +M +KGI+PD   + ++  G       + AF+L DEM + 
Sbjct: 581 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640

Query: 61  GVAADTR 67
           G A D +
Sbjct: 641 GFAPDDK 647


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 108/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I P+VV +N L     +  +   A +L+DEM   G
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   IDG CK   +  + ++F  +    C  D+  ++ LIDG C + R++  +
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +PR  LVA+ VTY+ +IHG    G ++ A DL   M  + V P+++T  TL+ G 
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++  +  DAS
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDAS 499



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C   ++  AL+L  +M+S G+ PD+V  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 434 LIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 493

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D  TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 494 MDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  +
Sbjct: 554 LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 613

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            I + TLI+GF ++   +  +++  +M    V PD  +I +++    +K E+
Sbjct: 614 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEEL 665



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV   TL  GL   H+V  A  LF ++ R 
Sbjct: 121 ILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR- 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T+T  ++GLC+ G +VE+V L   +     + D   Y   +DG+CK G    A
Sbjct: 180 ---PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSA 236

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     +  +VV YS +I GL  DG+   +H+LF++M++  + PN++T+  +I 
Sbjct: 237 LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIG 296

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S    LL +M E+ + P+    + +++   K
Sbjct: 297 GFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK 335



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV+ +N L  GL    +   A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VAD + Y  +I+G    G ++ A D+F +M  + V P+
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPD 648

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ GF    E  + + +L  ++
Sbjct: 649 TITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C +  +  AL+L+ ++     +PDV+   TL  GL    +V  A  L D M  +G
Sbjct: 157 LLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D  TY  F+DG+CK G  V ++ L R +  I   + ++  YS +IDGLCK GR   +
Sbjct: 213 LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  ++VTY+ MI G    G+   A  L  +M E  ++PNV+T+  LI+ 
Sbjct: 273 HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINA 332

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F++  +  +  EL  +M  + ++P+    + ++D   K +
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+     + NL+ EM  KGI P++V +N +  G     +   A +L  EM    
Sbjct: 259 IIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY   I+   K G   E+ EL+  +       +   Y+ +IDG CK  RL+ A 
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ +       DV T++ +I G     ++D   +L  +M    +  N +T+ TLIHGF
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             + + +  ++L  +M    V PD    + ++D L  N    ++L  F   ++ +
Sbjct: 439 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 493



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G  + K +E A++L+S+ML     P V+  N L   +  + + +    L+ +M+R  
Sbjct: 52  LRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQ 111

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++TI I   C    +  ++  F  L  L    D+  ++ L+ GLC   R+  AL
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH + R     DV+T++ +++GL  +G++ +A  L   M EN + P+ IT+GT + G 
Sbjct: 172 DLFHQICR----PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM 227

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            ++ +    + LL KM+E  ++ P+  I S ++D L K+
Sbjct: 228 CKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKD 266



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   +  A+ L   M+  G++PD + + T   G+ ++     A  L  +M+   
Sbjct: 188 LMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEIS 247

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  IDGLCK+G   +S  LF  ++      +I  Y+C+I G C SGR   A
Sbjct: 248 HIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAA 307

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  +VVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 308 QRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 367

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + +      ++ + M  K   PD    + ++D
Sbjct: 368 FCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 401



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++G CK  +   ALNL  +M     IKP+VVI++ +  GL +  +   +  LF EMQ  
Sbjct: 223 FVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDK 282

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I G C +G    +  L + +   K   ++  Y+ LI+   K G+   A
Sbjct: 283 GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEA 342

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TY+ MI G     ++D A D+F  M     +P+V TF TLI 
Sbjct: 343 AELYDEMLPRGI-IPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 401

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
           G+         +ELLH+M  + ++ + 
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGLVANT 428



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  D +I+ TL  G  ++  +  A  +F EM   G
Sbjct: 585 LINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 644

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           V  DT T    + G      +  +V +   L++
Sbjct: 645 VYPDTITIRNMLTGFWSKEELERAVAMLEDLQM 677


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 108/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C +     A  L  EML + I P+VV +N L     +  +   A +L+DEM   G
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   IDG CK   +  + ++F  +    C  D+  ++ LIDG C + R++  +
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +PR  LVA+ VTY+ +IHG    G ++ A DL   M  + V P+++T  TL+ G 
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
               +    +E+   M++  +  DAS
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDAS 499



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+G+C   ++  AL+L  +M+S G+ PD+V  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 434 LIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 493

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D  TY I I GL   G  +E+ EL+  +       D   YS +IDG
Sbjct: 494 MDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       +VVT++ +I+G    G++D   +LF +M    +  +
Sbjct: 554 LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 613

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            I + TLI+GF ++   +  +++  +M    V PD  +I +++    +K E+
Sbjct: 614 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEEL 665



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G+ PDVV   TL  GL   H+V  A  LF ++ R 
Sbjct: 121 ILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR- 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T+T  ++GLC+ G +VE+V L   +     + D   Y   +DG+CK G    A
Sbjct: 180 ---PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSA 236

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     +  +VV YS +I GL  DG+   +H+LF++M++  + PN++T+  +I 
Sbjct: 237 LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIG 296

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF      S    LL +M E+ + P+    + +++   K
Sbjct: 297 GFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK 335



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 11/209 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C N +++ AL ++  M              G++PDV+ +N L  GL    +   A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  IDGLCK   + E+ ++F ++       ++  ++ LI+G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+GR++  LELF  + R  +VAD + Y  +I+G    G ++ A D+F +M  + V P+
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPD 648

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKE 199
            IT   ++ GF    E  + + +L  ++ 
Sbjct: 649 TITIRNMLTGFWSKEELERAVAMLEDLQR 677



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C +  +  AL+L+ ++     +PDV+   TL  GL    +V  A  L D M  +G
Sbjct: 157 LLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D  TY  F+DG+CK G  V ++ L R +  I   + ++  YS +IDGLCK GR   +
Sbjct: 213 LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  ++VTY+ MI G    G+   A  L  +M E  ++PNV+T+  LI+ 
Sbjct: 273 HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINA 332

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F++  +  +  EL  +M  + ++P+    + ++D   K +
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+     + NL+ EM  KGI P++V +N +  G     +   A +L  EM    
Sbjct: 259 IIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY   I+   K G   E+ EL+  +       +   Y+ +IDG CK  RL+ A 
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ +       DV T++ +I G     ++D   +L  +M    +  N +T+ TLIHGF
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE-EVDE 240
             + + +  ++L  +M    V PD    + ++D L  N    ++L  F   ++ + ++D 
Sbjct: 439 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 498

Query: 241 SN 242
           S+
Sbjct: 499 SH 500



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 5/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G  + K +E A++L+S+ML     P V+  N L   +  + + +    L+ +M+R  
Sbjct: 52  LRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQ 111

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++TI I   C    +  ++  F  L  L    D+  ++ L+ GLC   R+  AL
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH + R     DV+T++ +++GL  +G++ +A  L   M EN + P+ IT+GT + G 
Sbjct: 172 DLFHQICR----PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM 227

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            ++ +    + LL KM+E  ++ P+  I S ++D L K+
Sbjct: 228 CKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKD 266



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   +  A+ L   M+  G++PD + + T   G+ ++     A  L  +M+   
Sbjct: 188 LMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEIS 247

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  IDGLCK+G   +S  LF  ++      +I  Y+C+I G C SGR   A
Sbjct: 248 HIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAA 307

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  +VVTY+ +I+    +G+  +A +L+ +M    + PN IT+ ++I G
Sbjct: 308 QRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 367

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F + +      ++ + M  K   PD    + ++D
Sbjct: 368 FCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 401



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++G CK  +   ALNL  +M     IKP+VVI++ +  GL +  +   +  LF EMQ  
Sbjct: 223 FVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDK 282

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I G C +G    +  L + +   K   ++  Y+ LI+   K G+   A
Sbjct: 283 GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEA 342

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL+   LPRG+ + + +TY+ MI G     ++D A D+F  M     +P+V TF TLI 
Sbjct: 343 AELYDEMLPRGI-IPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLID 401

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
           G+         +ELLH+M  + ++ + 
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGLVANT 428



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++  L L+ EM  +GI  D +I+ TL  G  ++  +  A  +F EM   G
Sbjct: 585 LINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 644

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE 98
           V  DT T    + G      +  +V +   L+  + E
Sbjct: 645 VYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQLE 681


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 111/220 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+ K  ++  A  L+ EML KG  P V  +N+L  G     +  R   LF +M R 
Sbjct: 162 VLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   +DG CK G +VE+  LF  +R L C  D+ +Y+ LI G+C  G+   A
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +  D+V+Y+I+I G    G +D A  LF ++ ++ + P+  ++ T+I  
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R  +      +   M      PDA++V  +V  L + E
Sbjct: 342 LCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C+ ++++ A  L +EM+  G +P+VV + +L  GL ++ +++ A  LF  M   
Sbjct: 92  ILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR 151

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y + IDG  K G + E+  LF  +    C   +  Y+ L+ G  + G     
Sbjct: 152 GCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRV 211

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + R   V ++ T++ ++ G    G M +AH LFL+M      P+V+++ TLI G
Sbjct: 212 QSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRG 271

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                +P +   LL +M    V PD    +I++D  +K+
Sbjct: 272 MCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKS 310



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ A++L+S M+ +G  PD V++N L  G  +   +  A++LF+EM   G
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   + G  + G       LF+ +    C  +I  ++ L+DG CK G +  A 
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAH 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       DVV+Y+ +I G+ + G+  +A  L  +M  + V P+++++  LI G+
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGY 307

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       I+L +++ +  + PDA   S ++D L +
Sbjct: 308 SKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCR 344



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C+ +  E A +++  M ++G  P+V  ++ L  GL    +V+ A +L +EM   G
Sbjct: 58  LLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGG 117

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   + GLCK G + E+V+LF  +    C  D   Y+ LIDG  K G +  A 
Sbjct: 118 HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAY 177

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +     +  V TY+ ++ G    G+  +   LF DM      PN+ TF  L+ GF
Sbjct: 178 RLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGF 237

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ +  +   L  +M+     PD
Sbjct: 238 CKMGDMVEAHRLFLEMRSLGCPPD 261



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  ++  A  L+ EM S G  PDVV +NTL  G+    +   A +L  EM R G
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSG 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y I IDG  K+G +  +++LF  +     E D  +YS +ID LC++G++  A 
Sbjct: 293 VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAF 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       D      ++ GL    ++ ++ +LF  M +    P +  +  L++  
Sbjct: 353 VVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKL 412

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +      V E+ H++ E+   PD  I  ++++ L +++
Sbjct: 413 CKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSD 451



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 102/211 (48%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+   +     Y++ML+ G  P+   +  L   L +  + E A  +F  M   G + +  
Sbjct: 29  KSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVF 88

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           +Y+I I GLC+   + E+ EL   +     + ++  Y  L+ GLCK G+L+ A++LF  +
Sbjct: 89  SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  D V Y+++I G    G M +A+ LF +M E    P V T+ +L+ GF R  E 
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +V  L   M  +  +P+    + ++D   K
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N L   L +  + +  +  +++M   G   +T TY   +  LC+     E+  +FR + 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
              C  ++ +YS LI GLC+  +++ A EL + +  G    +VVTY  ++ GL   G++ 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           +A DLF  M      P+ + +  LI GF +  +  +   L  +M EK  +P
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY K+  ++ A+ L+ E+   G++PD   ++T+   L    +V  AF +F +M  +
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D       + GLC+   + ES ELF+ +   +C   I  Y+ L+  LCK+ R +  
Sbjct: 362 GSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDV 421

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            E+FH L       DV    +++  L      D A
Sbjct: 422 CEIFHELTERGFSPDVEISKVILETLRRSDDKDAA 456



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 77/154 (50%)

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
           T +Y   ++ L K+G        +  +    C  +   Y  L+  LC++ R E A  +F 
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +       +V +YSI+I GL    ++D+A +L  +M +    PNV+T+G+L+ G  ++ 
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  + ++L  +M  +   PD  + ++++D  +K 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK 170


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+   K  ++E A     E+  +G+KPD V      +G  +  ++  A K FDEM   G
Sbjct: 425 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 484

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT+ I+G  K G ++E++ +FR L  L    D+Q  S  I GL K+GR++ AL
Sbjct: 485 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 544

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L    LV DV TYS +I G    G+++KA +L  +M    +APN+  +  L+ G 
Sbjct: 545 KVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGL 604

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +  +  +L   M EK + PD+   S ++D   K+E
Sbjct: 605 CKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 643



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 110/212 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K   +  AL+++  + + G+ PDV   +    GL +  +V+ A K+F E++  
Sbjct: 494 VLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 553

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+  I G CK G + ++ EL   + +     +I  Y+ L+DGLCKSG ++ A
Sbjct: 554 GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 613

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +P   L  D VTYS MI G      + +A  LF +M    V P+   +  L+HG
Sbjct: 614 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 673

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             +  +  K + L  +M +K      S  +++
Sbjct: 674 CCKEGDMEKAMNLFREMLQKGFATTLSFNTLI 705



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I GY K  ++  A   + EML  G+ P+  ++  L  G F+   +  A  +F  +   G
Sbjct: 460 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 519

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D +T + FI GL KNG + E++++F  L+      D+  YS LI G CK G +E A 
Sbjct: 520 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 579

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  ++  Y+ ++ GL   G + +A  LF  M E  + P+ +T+ T+I G+
Sbjct: 580 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 639

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    ++   L H+M  K V P + + + +V
Sbjct: 640 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK++ +  A +L+ EM SKG++P   ++N L  G  +   +E+A  LF EM + G
Sbjct: 635 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 694

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A  T ++   IDG CK+  I E+ +LF+ +   +   D   Y+ +ID  CK+G++E A 
Sbjct: 695 FAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 753

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L+ D VTY+ +++G    GQ  +   LF  M    V P+ +T+G +I+  
Sbjct: 754 LLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAH 813

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + +   +  +L  ++  K ++   +I  +++  L K E
Sbjct: 814 CKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 852



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C  K++  A  L  +M   G+KP+VV+++TL +G     ++E A +L D M   G
Sbjct: 355 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG 414

Query: 62  VA-----------------------------------ADTRTYTIFIDGLCKNGYIVESV 86
           VA                                    D  T+  FI G  K G + E+ 
Sbjct: 415 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 474

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + F  +       +   Y+ LI+G  K+G L  AL +F  L    ++ DV T S  IHGL
Sbjct: 475 KYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGL 534

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++ +A  +F +++E  + P+V T+ +LI GF +  E  K  EL  +M  K + P+ 
Sbjct: 535 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 594

Query: 207 SIVSIVVDLLAKN 219
            I + +VD L K+
Sbjct: 595 FIYNALVDGLCKS 607



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 104/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+  G C+ K +  A   + EM   G+KPD    + L  G      ++   ++ D M   
Sbjct: 214 IITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSC 273

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + I GLCK G + ++ E+ + +  L C+ + + +  LI+G C+   +  A
Sbjct: 274 GIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRA 333

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   + +  LV   V+Y  MI+GL +   +  A+ L   M  + + PNV+ + TLI G
Sbjct: 334 LELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMG 393

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +       +   LL  M    V PD    + ++  L+K
Sbjct: 394 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 431



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 105/205 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +  +I+  L +   M+S GI  +++ +N L  GL +  ++E+A ++   M   G
Sbjct: 250 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++RT+ + I+G C+   +  ++EL   +          +Y  +I+GLC    L +A 
Sbjct: 310 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +VV YS +I G  ++G++++A  L   M  + VAP++  +  +I   
Sbjct: 370 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 429

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +  +  +    L +++ + + PDA
Sbjct: 430 SKAGKMEEASTYLLEIQGRGLKPDA 454



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   G+  +T TYTI   GLC+   + E+   F  ++    + D  A S LIDG  + G 
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++  L +   +    +  +++TY+++IHGL   G+M+KA ++   M      PN  TF  
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           LI G+ R +   + +ELL +M+++N++P A
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSA 349



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK+ +I+ A  L+ EM++K I PD V + T+     +  ++E A  LF EMQ   
Sbjct: 704 LIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN 763

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TYT  + G  K G   E   LF  +     + D   Y  +I   CK   L  A 
Sbjct: 764 LIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 823

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    ++     + ++I  L     + +A  L  +M E  + P++    TL+  F
Sbjct: 824 KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSF 883

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +  +   +   +K   ++PD    + ++DL+  N
Sbjct: 884 HEAGKMDEATRVFEGVKSLGLVPD---TTTLIDLVNGN 918



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GY K  +      L+ +M++KG+KPD V +  +     +   +  AFKL DE+   G
Sbjct: 774 LMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 833

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      + + I  LCK   + E+ +L   +  L  +  + A S L+    ++G+++ A 
Sbjct: 834 MLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEAT 893

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
            +F  +    LV D  T   +++G  ND   + A +L
Sbjct: 894 RVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNL 930



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 51/112 (45%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            Y+ +  GLC++ R+  A   F  + +  L  D    S +I G   +G +D+   +   M
Sbjct: 211 TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 270

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  N+IT+  LIHG  +  +  K  E+L  M      P++    ++++
Sbjct: 271 VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIE 322



 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   CK +++  A  L  EM   G+KP +   +TL     E  +++ A ++F+ ++  
Sbjct: 843 LLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSL 902

Query: 61  GVAADTRTYTIFIDG 75
           G+  DT T    ++G
Sbjct: 903 GLVPDTTTLIDLVNG 917



 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 47/110 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I  +CK   +  A  L  E++ KG+     IH+ L   L +   +  A KL DEM   
Sbjct: 808 LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGEL 867

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           G+       +  +    + G + E+  +F  ++ L    D      L++G
Sbjct: 868 GLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 917


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 114/214 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK K I+ AL    EM ++GIKPD  I+N +  GL +  +VE A  LF++M +  +  + 
Sbjct: 20  CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 79

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY   I+GLCK   I  + ELF+ +          +Y+ LIDG CK   L  A ++F  
Sbjct: 80  VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDK 139

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + R   V +VVTY+ +I GL   G++  A ++   M +  V PNV T+  LI GF ++  
Sbjct: 140 MVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 199

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +LL +M  + + P     +I+++ L + +
Sbjct: 200 VDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRAD 233



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 111/203 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+ +++E A  L+ +M+ + I P+VV +NTL  GL +  ++E A++LF EM   G
Sbjct: 50  VLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKG 109

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   IDG CK   +V + ++F  +    C  ++  Y+ LIDGL KSG+++ A 
Sbjct: 110 YVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAA 169

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  +  +V TYS +I G     ++D+AH L   M    +AP V+T+  L++  
Sbjct: 170 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 229

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R ++     +L   M ++   P
Sbjct: 230 CRADKLEDAFKLFRGMAQRRCHP 252



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 107/197 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK K++  A +++ +M+     P+VV + TL  GL +  +V+ A ++ D M + G
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 179

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  IDG CK   + E+ +L   +        +  Y+ L++ LC++ +LE A 
Sbjct: 180 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAF 239

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +      VVTY+ ++  L +  Q+D AH L+ +M      P+ IT+ TL  G 
Sbjct: 240 KLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGL 299

Query: 182 IRINEPSKVIELLHKMK 198
            R  +  +  EL+ KMK
Sbjct: 300 TRAGKVHEAQELMEKMK 316



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 9/235 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   IE A  L+ EM  KG  P  V +NTL  G  +   +  A  +FD+M R  
Sbjct: 85  LINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN 144

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGL K+G +  + E+   +       ++  YSCLIDG CK  R++ A 
Sbjct: 145 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH 204

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +   VVTY+I+++ L    +++ A  LF  M +    P V+T+ TL+   
Sbjct: 205 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 264

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               +      L  +M  K   PDA    I  D LA             VHE QE
Sbjct: 265 CHHKQLDGAHRLYAEMIAKGCPPDA----ITYDTLAWGLTRAGK-----VHEAQE 310



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 95/196 (48%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           +++   PD + +  +   L +  +++ A    +EM   G+  D   Y   + GLC+   +
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
            E+  LF  +   +   ++  Y+ LI+GLCK+ R+E A ELF  +     V   V+Y+ +
Sbjct: 61  EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I G      +  A D+F  M  +   PNV+T+ TLI G  +  +     E+L  M +K V
Sbjct: 121 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180

Query: 203 MPDASIVSIVVDLLAK 218
            P+ +  S ++D   K
Sbjct: 181 TPNVATYSCLIDGFCK 196



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 80/155 (51%)

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D  TY   ++ LCK   I +++     +     + D   Y+ ++ GLC+  ++E A  LF
Sbjct: 8   DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 67

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             + +  +  +VVTY+ +I+GL    +++ A++LF +M      P  +++ TLI GF + 
Sbjct: 68  EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 127

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     ++  KM   N +P+    + ++D L+K+
Sbjct: 128 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKS 162



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  C+  ++E A  L+  M  +   P VV +NTL   L    Q++ A +L+ EM   
Sbjct: 224 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK 283

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
           G   D  TY     GL + G + E+ EL   +++ K
Sbjct: 284 GCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTK 319



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 59/121 (48%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D   Y  +++ LCK+ R++ AL     +    +  D   Y+ ++ GL  + ++++A  LF
Sbjct: 8   DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 67

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M +  + PNV+T+ TLI+G  +        EL  +M  K  +P     + ++D   K 
Sbjct: 68  EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 127

Query: 220 E 220
           +
Sbjct: 128 K 128


>gi|357499035|ref|XP_003619806.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355494821|gb|AES76024.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 302

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 118/202 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CKNK ++ A+NL+ E+  K + PD+V +++L  GL +  ++   + L D+M   G
Sbjct: 1   MINGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRG 60

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD   YT  +D L KN  + +++ L + ++    E D+  Y+ L+DGLCK+GRL+ A 
Sbjct: 61  QQADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMFTYTMLVDGLCKNGRLKDAQ 120

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  L       +   +++MI+GL  +G  D+A  +  +ME+N   P+V+T+ TLI   
Sbjct: 121 EVYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDNGCTPDVVTYKTLIRAL 180

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            + +   K ++LL +M  + ++
Sbjct: 181 FKNDMNDKAVKLLREMLSRGLL 202



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 79/146 (54%)

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+GLCKN  + E+V LF+ L +     DI AYS LIDGLCKSG++    +L   +     
Sbjct: 2   INGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRGQ 61

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
            AD++ Y+ ++  L+ + Q+DKA  L   +++  + P++ T+  L+ G  +        E
Sbjct: 62  QADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMFTYTMLVDGLCKNGRLKDAQE 121

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   +  K    +A + +++++ L K
Sbjct: 122 VYRDLMVKGYHFNACMHNVMINGLCK 147



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 63/113 (55%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +I+GLCK+  ++ A+ LF  L    +  D+V YS +I GL   G++    DL  DM +  
Sbjct: 1   MINGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRG 60

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              ++I + +L+    + ++  K I LL K+K++ + PD    +++VD L KN
Sbjct: 61  QQADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMFTYTMLVDGLCKN 113



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CKN  ++ A  +Y +++ KG   +  +HN +  GL +    + A  +  EM+ +
Sbjct: 105 MLVDGLCKNGRLKDAQEVYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDN 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G   D  TY   I  L KN    ++V+L R +
Sbjct: 165 GCTPDVVTYKTLIRALFKNDMNDKAVKLLREM 196



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK    + AL + SEM   G  PDVV + TL   LF+    ++A KL  EM   
Sbjct: 140 VMINGLCKEGLFDEALFVLSEMEDNGCTPDVVTYKTLIRALFKNDMNDKAVKLLREMLSR 199

Query: 61  GV 62
           G+
Sbjct: 200 GL 201


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 4/209 (1%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LING+C +  +  A  ++  M+SKG  PDVV +NTL  G  +  +VE   KLF EM   G
Sbjct: 820  LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 879

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
            +  D  TY   I G C+ G +  + ++F   R++ C +  DI  Y+ L+D LC +G++E 
Sbjct: 880  LVGDAFTYNTLIHGYCQAGKLNVAQKVFN--RMVDCGVSPDIVTYNILLDCLCNNGKIEK 937

Query: 120  ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            AL +   L +  +  D++TY+I+I GL    ++ +A  LF  +    V P+ I + T+I 
Sbjct: 938  ALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 997

Query: 180  GFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G  R     +  +L  +MKE   MP   I
Sbjct: 998  GLCRKGLQREADKLCRRMKEDGFMPSERI 1026



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K   ++ A  LY EM+   + P+ V +N++  GL    ++  A K FD M   G
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I G CK   + E ++LF+ +       DI  Y+ LI G C+ G+L +AL
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    +  D++T+ I++HGL  +G+++ A   F DM E+     ++ +  +IHG 
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + ++  K  EL  ++  + V PDA   +I++  L KN
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKN 469



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 103/202 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C +  +  A   +  M SKG  P+VV +NTL  G  +   V+   KLF  M  +G
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TY   I G C+ G +  ++++F  +   +   DI  +  L+ GLC +G +E AL
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +        +V Y+IMIHGL    +++KA +LF  +    V P+  T+  +I G 
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +     +  EL+ +MKE+ ++
Sbjct: 467 CKNGPRREADELIRRMKEEGII 488



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN E+  AL L +EM  KG+  DVV +NTL  GL    +   A ++  +M +  
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  ID   K G + E+ EL++ +     + +   Y+ +I+GLC  GRL  A 
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  +       +VVTY+ +I G      +D+   LF  M       ++ T+ TLIHG+
Sbjct: 302 KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ +    +++   M  + V PD
Sbjct: 362 CQVGKLRVALDIFCWMVSRRVTPD 385



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 105/196 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C    I  A +L   M+  G +P+VV++NTL  GL +  ++  A +L +EM++ G
Sbjct: 147 LLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKG 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   + GLC +G   ++  + R +       D+  ++ LID   K G L+ A 
Sbjct: 207 LGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQ 266

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  + +  +  + VTY+ +I+GL   G++  A   F  M      PNV+T+ TLI GF
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326

Query: 182 IRINEPSKVIELLHKM 197
            +     + ++L  +M
Sbjct: 327 CKFRMVDEGMKLFQRM 342



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+   +  AL++  +M+  G +P +V   +L  G   ++++  AF L   M + 
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   IDGLCKNG +  ++EL   +       D+  Y+ L+ GLC SGR   A
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  +  DVVT++ +I      G +D+A +L+ +M +++V PN +T+ ++I+G
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                R+ +  K  +L   M  K   P+    + ++    K
Sbjct: 291 LCMHGRLYDAKKTFDL---MASKGCFPNVVTYNTLISGFCK 328



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CKN+++  AL ++  M  KGI+ D V +NTL  GL    +   A +L  +M +  
Sbjct: 715 VINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK 774

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  ID   K G ++E+  L++ +       ++  Y+ LI+G C  G L  A 
Sbjct: 775 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 834

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       DVVTY+ +I G     +++    LF +M    +  +  T+ TLIHG+
Sbjct: 835 YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 894

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + +   ++ ++M +  V PD    +I++D L  N
Sbjct: 895 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 932



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 106/205 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+    + A++L   M   G  P+VVI+NT+  GL +   +  A ++F  M++ G
Sbjct: 680 LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 739

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I GL  +G   ++  L R +   K + ++  ++ LID   K G L  A 
Sbjct: 740 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 799

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  +V +V TY+ +I+G    G +  A  +F  M      P+V+T+ TLI GF
Sbjct: 800 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 859

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +       ++L  +M  + ++ DA
Sbjct: 860 CKSKRVEDGMKLFCEMTYQGLVGDA 884



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+   +  AL L  +M+  G +P +V   +L  G  + ++ + A  L D M   
Sbjct: 644 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 703

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   I+GLCKN  +  ++E+F  +       D   Y+ LI GL  SGR   A
Sbjct: 704 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 763

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+ ++ +I     +G + +A +L+ +M   +V PNV T+ +LI+G
Sbjct: 764 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 823

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F           +   M  K   PD    + ++    K++
Sbjct: 824 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSK 863



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L  G+  +   E A  L+ EM+     P +V    L      + + E       +M+  G
Sbjct: 42  LRTGFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYG 101

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  ++TI I   C+   +  ++ +   +  L  E  I  +  L+ G C   R+  A 
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     +VV Y+ +I GL  +G+++ A +L  +ME+  +  +V+T+ TL+ G 
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
                 S    +L  M ++++ PD    + ++D+  K + +L+          Q  VD +
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVK-QGNLDEAQELYKEMIQSSVDPN 280

Query: 242 NV 243
           NV
Sbjct: 281 NV 282



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 35/230 (15%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           + + A +L+ EML     P +V    +   + ++++ +    L+ +M+  G++ D  ++T
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 643

Query: 71  IFI-----------------------------------DGLCKNGYIVESVELFRTLRIL 95
           I I                                   +G C+     E+V L  ++   
Sbjct: 644 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 703

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
               ++  Y+ +I+GLCK+  L  ALE+F+ + +  + AD VTY+ +I GL N G+   A
Sbjct: 704 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 763

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             L  DM +  + PNVI F  LI  F++     +   L  +M  ++V+P+
Sbjct: 764 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPN 813



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 56/93 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N EIE AL  + +M        +V +N +  GL +  +VE+A++LF  +  +
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           GV  D RTYTI I GLCKNG   E+ EL R ++
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMK 483



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            IL++  C N +IE AL +  ++    +  D++ +N +  GL    +++ A+ LF  + R 
Sbjct: 924  ILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRK 983

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
            GV  D   Y   I GLC+ G   E+ +L R ++
Sbjct: 984  GVKPDAIAYITMISGLCRKGLQREADKLCRRMK 1016



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 63/125 (50%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           + K  + +I + L+H +    +  D+ +++I+IH      ++  A  L   M +    P+
Sbjct: 614 IAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPS 673

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           ++T G+L++GF + N   + + L+  M     +P+  I + V++ L KN    N+L  F 
Sbjct: 674 IVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFY 733

Query: 231 VHERQ 235
             E++
Sbjct: 734 CMEKK 738



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            I+I G C+  +++ A  L+  +  KG+KPD + + T+  GL        A KL   M+ D
Sbjct: 959  IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 1018

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
            G     R Y    D   ++ Y   S EL + 
Sbjct: 1019 GFMPSERIY----DETLRDHYTSLSAELIKA 1045



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK  ++E A  L+  +  +G+KPD   +  + +GL +      A +L   M+ +
Sbjct: 426 IMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEE 485

Query: 61  GV 62
           G+
Sbjct: 486 GI 487


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 113/214 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK   +  A   + EML +G++ D   + T  +G  ++    RAF L +EM   
Sbjct: 449 ILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y + +DGLCK G + E+ EL + +       D   Y+ +I    ++GRL   
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F+ +    L   VVTY+++IHG    G++++A   F +M+E  + PNVIT+ +LI+G
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             ++    +      +M EK + P+    +I+++
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILIN 662



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 118/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+   +  A  L+ E+ S  + P +V +NTL  GL    ++E A +L  EM  +G
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--------------- 106
           +A D  TYTI ++G CK G +  + E F  +     ELD  AY+                
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF 499

Query: 107 --------------------LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                               ++DGLCK G LE A EL   +    ++ D VTY+ +IH  
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++ K  ++F +M    + P+V+T+  LIHG        +      +M+EK ++P+ 
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 207 SIVSIVVDLLAK 218
              + +++ L K
Sbjct: 620 ITYNSLINGLCK 631



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY     +  AL+L  EM+ KG  P V  +N+   GL ++ ++  A +   +M  + 
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G C+ G ++++  LF  LR +     I  Y+ L+DGLC+ G LE+A 
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D+VTY+I+++G    G +  A + F +M    +  +   + T I G 
Sbjct: 430 QLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGE 489

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +++ + S+   L  +M  K   PD  I ++VVD L K
Sbjct: 490 LKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCK 526



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 112/217 (51%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G  K  +   A +L  EML+KG  PD++I+N +  GL ++  +E A +L  +M  DGV
Sbjct: 486 IVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGV 545

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  TYT  I    +NG + +  E+F  +        +  Y+ LI G    GRLE A  
Sbjct: 546 IPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFI 605

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
            F  +    ++ +V+TY+ +I+GL    +MD+A++ F +M E  + PN  ++  LI+   
Sbjct: 606 YFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENC 665

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    + + L  +M ++ V PD+   S ++  L K+
Sbjct: 666 NMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKD 702



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ YCK  +++  L+L SEM  +G  P+ V +N L  GL +  + E+A  L  EM + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I G    G + E++ L   + +      +  Y+  I GLCK GR+  A+
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAM 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +    L+ DVV+Y+ +I+G    G + KA  LF ++    + P ++T+ TL+ G 
Sbjct: 360 QQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R  E     +L  +M  + + PD    +I+V+
Sbjct: 420 CRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ +Y  M   GIKP +V +NTL     +  +V++   L  EMQR G A +  TY + I+
Sbjct: 218 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLIN 277

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYS--CLIDGLCKSGRLEIALELFHSLPRGVL 132
           GL K G   ++  L   +  LK  L + AY+   LI G    G L  AL L   +     
Sbjct: 278 GLSKKGEFEQAKGLIGEM--LKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA 335

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
              V TY+  I+GL   G+M  A     DM  N + P+V+++ TLI+G+ R+    K   
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFL 395

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L  +++   + P     + ++D L + 
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQ 422



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y K   +E  L+++ +M+   + PDV   N +   L +   + +A +++  M   
Sbjct: 169 LLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEF 228

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   +D  CK G + + ++L   ++   C  +   Y+ LI+GL K G  E A
Sbjct: 229 GIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQA 288

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  L     TY+ +I+G +N G + +A  L  +M     +P V T+ + I+G
Sbjct: 289 KGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYG 348

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             ++   S  ++ L  M   N++PD
Sbjct: 349 LCKLGRMSDAMQQLSDMLANNLLPD 373



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 12/230 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK   +E A  L  +M+S G+ PD V + ++     E  ++ +  ++F EM   
Sbjct: 519 VVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSK 578

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT+ I G    G +  +   F  ++      ++  Y+ LI+GLCK  R++ A
Sbjct: 579 GLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQA 638

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  +    +  +  +Y+I+I+   N G   +A  L+  M +  V P+  T   L+  
Sbjct: 639 YNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK- 697

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
             ++ +  K    L  +   + MP A      VDLL++   +  +L S +
Sbjct: 698 --QLGKDCK----LQAVHGTSTMPTAK-----VDLLSQTVGAATALTSVS 736



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 85/172 (49%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           VE+   +FD+M +  ++ D +     +  L     + ++VE++RT+     +  I  Y+ 
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+D  CK G+++  L+L   + R     + VTY+++I+GL   G+ ++A  L  +M +  
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +  T+  LI+G+      ++ + L  +M  K   P  +  +  +  L K
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCK 351



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 62/124 (50%)

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           +  E+ ++    LI    K   +E  L +F  + +  L  DV   + ++  L +   M K
Sbjct: 158 VSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSK 217

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A +++  M E  + P ++T+ TL+  + +  +  + ++LL +M+ +   P+    +++++
Sbjct: 218 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLIN 277

Query: 215 LLAK 218
            L+K
Sbjct: 278 GLSK 281


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 4/209 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C +  +  A  ++  M+SKG  PDVV +NTL  G  +  +VE   KLF EM   G
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
           +  D  TY   I G C+ G +  + ++F   R++ C +  DI  Y+ L+D LC +G++E 
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNVAQKVFN--RMVDCGVSPDIVTYNILLDCLCNNGKIEK 412

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL +   L +  +  D++TY+I+I GL    ++ +A  LF  +    V P+ I + T+I 
Sbjct: 413 ALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASI 208
           G  R     +  +L  +MKE   MP   I
Sbjct: 473 GLCRKGLQREADKLCRRMKEDGFMPSERI 501



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CKN+++  AL ++  M  KGI+ D V +NTL  GL    +   A +L  +M +  
Sbjct: 190 VINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK 249

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  ID   K G ++E+  L++ +       ++  Y+ LI+G C  G L  A 
Sbjct: 250 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 309

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       DVVTY+ +I G     +++    LF +M    +  +  T+ TLIHG+
Sbjct: 310 YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + +   ++ ++M +  V PD    +I++D L  N
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 407



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 106/205 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+    + A++L   M   G  P+VVI+NT+  GL +   +  A ++F  M++ G
Sbjct: 155 LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I GL  +G   ++  L R +   K + ++  ++ LID   K G L  A 
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 274

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  +V +V TY+ +I+G    G +  A  +F  M      P+V+T+ TLI GF
Sbjct: 275 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 334

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +       ++L  +M  + ++ DA
Sbjct: 335 CKSKRVEDGMKLFCEMTYQGLVGDA 359



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+   +  AL L  +M+  G +P +V   +L  G  + ++ + A  L D M   
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   I+GLCKN  +  ++E+F  +       D   Y+ LI GL  SGR   A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+ ++ +I     +G + +A +L+ +M   +V PNV T+ +LI+G
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F           +   M  K   PD    + ++    K++
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSK 338



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 35/230 (15%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           + + A +L+ EML     P +V    +   + ++++ +    L+ +M+  G++ D  ++T
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118

Query: 71  IFI-----------------------------------DGLCKNGYIVESVELFRTLRIL 95
           I I                                   +G C+     E+V L  ++   
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
               ++  Y+ +I+GLCK+  L  ALE+F+ + +  + AD VTY+ +I GL N G+   A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             L  DM +  + PNVI F  LI  F++     +   L  +M  ++V+P+
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPN 288



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  C N +IE AL +  ++    +  D++ +N +  GL    +++ A+ LF  + R 
Sbjct: 399 ILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRK 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           GV  D   Y   I GLC+ G   E+ +L R ++
Sbjct: 459 GVKPDAIAYITMISGLCRKGLQREADKLCRRMK 491



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 62/123 (50%)

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K  + +I + L+H +    +  D+ +++I+IH      ++  A  L   M +    P+++
Sbjct: 91  KMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIV 150

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
           T G+L++GF + N   + + L+  M     +P+  I + V++ L KN    N+L  F   
Sbjct: 151 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 210

Query: 233 ERQ 235
           E++
Sbjct: 211 EKK 213



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+  +++ A  L+  +  KG+KPD + + T+  GL        A KL   M+ D
Sbjct: 434 IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 493

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           G     R Y    D   ++ Y   S EL + 
Sbjct: 494 GFMPSERIY----DETLRDHYTSLSAELIKA 520


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+   + GA++L S+M     K DVVI+NT+  G  +   V  A  LF  M+RDG
Sbjct: 145 LINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDG 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V ADT TY   + GLC +G   ++  L R + +     ++  ++ LI+   + G+   A 
Sbjct: 205 VRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAK 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + +  + R  +  DV TY+ MIHGL   GQ+D+A  +   M      P+V+T+ TLI+GF
Sbjct: 265 KFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGF 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     +  +L+ +M ++ ++ D    + ++
Sbjct: 325 CKTKRVDEGTKLVREMSQRGLVVDTVTFNTII 356



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 3/203 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C + +++ A  +   M++KG  PDVV +NTL  G  +  +V+   KL  EM + G
Sbjct: 285 MIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT T+   I G  + G    + E+F  +       +I+ YS L+ GLC + R+E AL
Sbjct: 345 LVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLYGLCYNWRVEKAL 401

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF S+ +  +  D+ TY+I+IHG+   G ++ A DLF  +    + P+V+T+ T+I GF
Sbjct: 402 VLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGF 461

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R     K   L  KM+E  ++P
Sbjct: 462 CRKRLWDKADFLYRKMQEDGLLP 484



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K+K  +  ++L+  M   GI  D+  +N +   L    +   A  +  +M + G
Sbjct: 75  LLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKFG 134

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T +  I+G C+   +  +V+L   +  ++C+LD+  Y+ +IDG CK+G +  AL
Sbjct: 135 YEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNAL 194

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R  + AD VTY+ ++ GL   G+   A  L  DM    + PNVITF  LI+ F
Sbjct: 195 VLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAF 254

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +R  +  +  +   +M  + + PD
Sbjct: 255 VREGKFLEAKKFYEEMIRRCIDPD 278



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 105/220 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  C+      AL++  +M+  G +PDVV  ++L  G  + ++V  A  L  +M+  
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEM 168

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D   Y   IDG CK G +  ++ LF  +       D   Y+ L+ GLC SGR   A
Sbjct: 169 RCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDA 228

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +V +V+T++ +I+    +G+  +A   + +M    + P+V T+ ++IHG
Sbjct: 229 ARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHG 288

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                +  +  ++L  M  K   PD    + +++   K +
Sbjct: 289 LCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTK 328



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN + +  +   A   Y EM+ + I PDV  +N++  GL    QV+ A ++ D M   G
Sbjct: 250 LINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+G CK   + E  +L R +      +D   ++ +I G  ++GR + A 
Sbjct: 310 CFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQ 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       ++ TYSI+++GL  + +++KA  LF  M+++ +  ++ T+  +IHG 
Sbjct: 370 EIFSRMGSR---PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGM 426

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             I       +L   +  K + PD    + ++    +  +
Sbjct: 427 CMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRL 466



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 75/151 (49%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E+++LF  +   +    I  +S L+  + KS   ++ + LFH++    +  D+ TY+I+I
Sbjct: 52  EAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVI 111

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           + L    +   A  +   M +    P+V+T  +LI+GF + N     ++L+ KM+E    
Sbjct: 112 NCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCK 171

Query: 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
            D  I + ++D   K  +  N+L  F   ER
Sbjct: 172 LDVVIYNTIIDGFCKTGLVNNALVLFGRMER 202



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C N  +E AL L+  M    ++ D+  +N +  G+  I  VE A+ LF  +   
Sbjct: 386 ILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFK 445

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  D  TYT  I G C+     ++  L+R ++
Sbjct: 446 GLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQ 478



 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G C    +E A +L+  +  KG++PDVV + T+  G       ++A  L+ +MQ D
Sbjct: 421 IVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQED 480

Query: 61  GV 62
           G+
Sbjct: 481 GL 482


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK K IE A  LY  M+  G+ PDVV  + L  GL    +   A+ LF EM + G
Sbjct: 265 LIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIG 324

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  TY  FID L K   + ES+ L   +      +D+  Y+ ++D L K G++E A 
Sbjct: 325 VAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAK 384

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++        +  + VTY++++      G +D A  + L MEE +V+PNV+TF ++++G 
Sbjct: 385 DVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGL 444

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++    +K    + KMK+  + P+      ++D
Sbjct: 445 VKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLID 477



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG  K   I  A     +M   GI P+VV + TL  G F+    E A  ++ +M  +G
Sbjct: 440 ILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEG 499

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+       ++GL KNG I E+  LF+ +      LD   Y+ L+DGL K+G +  AL
Sbjct: 500 VEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAAL 559

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   L    L  D V Y++ I+ L   G+  +A     +M    + P+  T+ T+I   
Sbjct: 560 KVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQ 619

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLL 216
            R    SK ++LL++MK  ++ P+  +  ++VV LL
Sbjct: 620 CREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLL 655



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 35/217 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK +++  AL +   M ++G+  DVV +NTL  G F     + A+++ + M+ DG
Sbjct: 195 LIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADG 254

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     T+T                                    LI   CK  R+E A 
Sbjct: 255 VEPSVVTHTT-----------------------------------LIGEYCKMKRIEEAF 279

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  ++ DVVT S ++ GL  DG+  +A+ LF +M++  VAPN +T+ T I   
Sbjct: 280 TLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSL 339

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++   ++ + LL +M  + V  D  + + V+D L K
Sbjct: 340 AKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGK 376



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 103/215 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  KN  IE A  L+ +M  +G+  D V + TL  GLF+   +  A K+  E+    
Sbjct: 510 LVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERN 569

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   Y +FI+ LC+ G   E+    + +R    E D   Y+ +I   C+ G    AL
Sbjct: 570 LSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKAL 629

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +  +++TY+ ++ GL   G ++KA  L  +M      P  +T+  ++   
Sbjct: 630 KLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQAC 689

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
                P  ++E+   M    +  D ++ + +V +L
Sbjct: 690 SGSRSPYVILEVHELMMGAGLHADITVYNTLVHVL 724



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 100/203 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K +  E AL++Y +ML +G++ +  I ++L  GL +   +E A  LF +M   G
Sbjct: 475 LIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERG 534

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   +DGL K G +  ++++ + L       D   Y+  I+ LC+ G+   A 
Sbjct: 535 LLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAK 594

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  D  TY+ MI     +G   KA  L  +M+ +++ PN+IT+ TL+ G 
Sbjct: 595 SFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGL 654

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
           +      K   LL++M      P
Sbjct: 655 LEAGVVEKAKYLLNEMASAGFTP 677



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   I+GA  +  +M  K + P+VV  +++  GL +   + +A     +M+  
Sbjct: 404 VLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDS 463

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +  TY   IDG  K      +++++R +     E +      L++GL K+G +E A
Sbjct: 464 GIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEA 523

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    L+ D V Y+ ++ GL+  G M  A  +  ++ E  ++P+ + +   I+ 
Sbjct: 524 EALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINC 583

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R+ + S+    L +M+   + PD +  + ++ 
Sbjct: 584 LCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMIS 617



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKP----DVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +I  YC    +  AL+L     S G +P    D V +N    GL E      A  +  EM
Sbjct: 86  IILSYCSLHALRPALSLLRS--SSGPQPQVAADTVSYNIFLAGLSEQGHGRLAPPVLSEM 143

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQAYSCLIDGLCKSG 115
            + GV  D  T +  + GL + G + E+  L   L   +    L +  ++ LIDG CK  
Sbjct: 144 CKRGVPWDGVTMSTALVGLSRTGLVGEAAALAEMLVRGRGIDGLGVVGWNALIDGYCKVQ 203

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            +  AL +   +    L  DVV Y+ ++ G +  G  D A ++   M+ + V P+V+T  
Sbjct: 204 DMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHT 263

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           TLI  + ++    +   L   M    V+PD   +S +VD L ++
Sbjct: 264 TLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRD 307



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 8/215 (3%)

Query: 21  EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
           EML +GI PD +  N L +G  +   ++ AF  + +M   G++ +  T+   + GL   G
Sbjct: 739 EMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAG 798

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
            I E+  +   ++ +  E +   Y  L+ G  K      AL L+  +     +    TY+
Sbjct: 799 RIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYN 858

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I      G M++A +LF +M+   V     T+  L++G+ ++   ++V  LL  MKE 
Sbjct: 859 SLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKEL 918

Query: 201 NVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
              P    +S +    +K        P  T   R+
Sbjct: 919 GFKPSKGTISSMSRAFSK--------PGMTWEARR 945



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 103/211 (48%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  +IE A ++    LS  I P+ V +  L         ++ A ++  +M+   V+ +  
Sbjct: 376 KEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVV 435

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T++  ++GL K G I ++    R ++      ++  Y  LIDG  K    E AL+++  +
Sbjct: 436 TFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDM 495

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               + A+      +++GL  +G +++A  LF DM E  +  + + + TL+ G  +    
Sbjct: 496 LHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNM 555

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +++  ++ E+N+ PDA + ++ ++ L +
Sbjct: 556 PAALKVGQELMERNLSPDAVVYNVFINCLCR 586



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C+      AL L +EM    IKP+++ + TL +GL E   VE+A  L +EM   G
Sbjct: 615 MISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAG 674

Query: 62  VAADTRTYTIFIDGLC--KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
                 TY   +      ++ Y++  +E+   +       DI  Y+ L+  LC  G    
Sbjct: 675 FTPTPLTYRRVLQACSGSRSPYVI--LEVHELMMGAGLHADITVYNTLVHVLCCHGMTRK 732

Query: 120 A-LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           A + L   L RG+   D +T++ +I G      +D A   +  M    ++PN+ TF TL+
Sbjct: 733 ATIVLDEMLGRGI-APDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLL 791

Query: 179 HGF---IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            G     RI E   VI    +MK+  + P+     I+V   AK    + +L
Sbjct: 792 GGLESAGRIGEADTVI---CEMKKMGLEPNNLTYDILVTGYAKKSNKVEAL 839



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 95/203 (46%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L ++  M+  G+  D+ ++NTL   L       +A  + DEM   G+A DT T+   I G
Sbjct: 699 LEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILG 758

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
            CK+ ++  +   +  +       +I  ++ L+ GL  +GR+  A  +   + +  L  +
Sbjct: 759 HCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPN 818

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
            +TY I++ G        +A  L+ +M      P   T+ +LI  F +    ++  EL  
Sbjct: 819 NLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFS 878

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +MK + V+  +S   I+++  +K
Sbjct: 879 EMKRRGVLHTSSTYDILLNGWSK 901



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ GY K      AL LY EM+SKG  P    +N+L     +   + +A +LF EM+R 
Sbjct: 824 ILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRR 883

Query: 61  GVAADTRTYTIFIDGLCK 78
           GV   + TY I ++G  K
Sbjct: 884 GVLHTSSTYDILLNGWSK 901


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  +CK  ++     L+ +ML  GI PD + +N L  G  +  +V+ A +L++EM   
Sbjct: 13  VVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSV 72

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   ++  CK   + E++ELF+T+     E D+  YS +I GLCK+G++  A
Sbjct: 73  GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEA 132

Query: 121 LE-LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           LE LFH +      A+ V Y+ +I+GL  D  +++A+ L  +M      P+ IT+ T++ 
Sbjct: 133 LEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILS 192

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  R+ + S+  +    M  +   PD    + ++D L K
Sbjct: 193 GLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK 231



 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+  ++  A   +  M S+G  PDVV +N L   L++  + + A KLF ++   G
Sbjct: 190 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKG 249

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY   + GL +   + E+ E+F+ +    C  +   YS ++ G C++ +++ A 
Sbjct: 250 YMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAH 309

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +   V DVVTY+I++ GL     +DKAH+LF  M +N  AP+++++  +++G 
Sbjct: 310 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 369

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N+      L  +M E+ ++PD    +I++D L K
Sbjct: 370 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCK 406



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I+G CK  ++  AL  L+ +M+ +G   + V +N L  GL +   +ERA+KL +EM   
Sbjct: 119 IISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASK 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   + GLC+ G + E+ + F ++       D+ AY+ L+D L K G+ + A
Sbjct: 179 GYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEA 238

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  +     + D VTY+ ++ GL     MD+A ++F  M  +  APN  T+  ++ G
Sbjct: 239 MKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSG 298

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             R  +     ++L +M +   +PD    +I++D L K  +
Sbjct: 299 HCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNL 339



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 109/201 (54%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           G  +   ++ A  ++ +M++ G  P+   ++ +  G     +V+ A K+ +EM + G   
Sbjct: 263 GLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVP 322

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D  TY I +DGLCK   + ++ ELF T+    C  DI +YS +++GLCK+ ++  A  LF
Sbjct: 323 DVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLF 382

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +    LV DVVT++I++ GL   G++D+A DL   M  +  AP+ + + TL++G  + 
Sbjct: 383 DRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQ 442

Query: 185 NEPSKVIELLHKMKEKNVMPD 205
               +   L   MKEK  + D
Sbjct: 443 GRHIQADRLTQAMKEKGFLSD 463



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K  + + A+ L+ ++++KG  PD V +N++ +GL     ++ A ++F +M   G
Sbjct: 225 LLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TY+I + G C+   + ++ ++   +  +    D+  Y+ L+DGLCK+  ++ A 
Sbjct: 285 CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 344

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++       D+V+YS++++GL    ++  A  LF  M E  + P+V+TF  L+ G 
Sbjct: 345 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGL 404

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +  +LL +M      PD    + +++ L K
Sbjct: 405 CKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRK 441



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 94/166 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G+C+ K+++ A  +  EM   G  PDVV +N L  GL + + V++A +LF  M  +
Sbjct: 294 IVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN 353

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D  +Y++ ++GLCK   + ++  LF  +   K   D+  ++ L+DGLCK+G+L+ A
Sbjct: 354 GCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 413

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
            +L   +       D V Y+ +++GL   G+  +A  L   M+E  
Sbjct: 414 KDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%)

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           +C  +   +  ++   CK G+L    +LF  +    +  D + Y+I+I G    G++D+A
Sbjct: 3   ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEA 62

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           + L+ +M    + P++ T+ +L++ F +  +  + +EL   M EK   PD    S ++  
Sbjct: 63  NRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISG 122

Query: 216 LAK 218
           L K
Sbjct: 123 LCK 125



 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  +++ A +L  +M   G  PD V +NTL  GL +  +  +A +L   M+  
Sbjct: 399 ILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEK 458

Query: 61  GVAAD 65
           G  +D
Sbjct: 459 GFLSD 463


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 122/215 (56%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQR 59
           IL+   C+N  +  A  ++ EM S+G+ PD+V  + L IGL   +  +++A K F +M+ 
Sbjct: 207 ILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL-IGLLSKNGCLDQALKYFRDMKN 265

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+A D   YTI I G C+NG + E++++   +    C LD+  Y+ +++GLCK   L  
Sbjct: 266 AGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSE 325

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +    +  D  T++ +I+G   DG M+KA  LF  M +  + P+V+T+ TLI 
Sbjct: 326 ADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 385

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           GF + +E  KV EL + M  + + P+     I+++
Sbjct: 386 GFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN 420



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+N  +  AL +  EML +G   DVV +NT+  GL +   +  A +LF EM   
Sbjct: 277 ILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTER 336

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I+G  K+G + ++V LF  +     + D+  Y+ LIDG CK   +E  
Sbjct: 337 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 396

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL++ +    +  + ++Y I+I+G  N G + +A  L+ +M E      +IT  T++ G
Sbjct: 397 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 456

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + R     K  E L  M  K ++PD    + +++   K E
Sbjct: 457 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 496



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  +   A  +  EML  G+ PD   +N L +       +  A ++FDEM   G
Sbjct: 173 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 232

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +++  I  L KNG + ++++ FR ++      D   Y+ LI G C++G +  AL
Sbjct: 233 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 292

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     V DVVTY+ +++GL  +  + +A +LF +M E  V P+  TF TLI+G+
Sbjct: 293 KVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 352

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    +K + L   M ++N+ PD    + ++D   K
Sbjct: 353 SKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 389



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 5/233 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY K+  +  A+ L+  M+ + +KPDVV +NTL  G  +  ++E+  +L+++M    
Sbjct: 348 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y I I+G C  G + E+  L+  +     E  I   + ++ G C++G    A 
Sbjct: 408 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E   ++    +V D +TY+ +I+G   +  MD+A  L   ME + + P+VIT+  +++GF
Sbjct: 468 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 527

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP-SFTVHE 233
            R     +   ++ KM E+ V PD S  + +++      ++ N+L  +F VH+
Sbjct: 528 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLIN----GHVTQNNLKEAFRVHD 576



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 115/221 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CKN++IE   +  S+M  KG+ PDVV +NTL         +E AF+L D M   
Sbjct: 102 IMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK 161

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I+GLCK G  + +  +   +  +    D   Y+ L+   C++  +  A
Sbjct: 162 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDA 221

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +P   +V D+V++S +I  L  +G +D+A   F DM+   +AP+ + +  LI G
Sbjct: 222 ERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 281

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F R    S+ +++  +M E+  + D    + +++ L K ++
Sbjct: 282 FCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 322



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 2/203 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           KN  ++ AL  + +M + G+ PD VI+  L  G      +  A K+ DEM   G   D  
Sbjct: 249 KNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVV 308

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   ++GLCK   + E+ ELF  +       D   ++ LI+G  K G +  A+ LF  +
Sbjct: 309 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 368

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +  L  DVVTY+ +I G     +M+K ++L+ DM    + PN I++G LI+G+  +   
Sbjct: 369 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCV 428

Query: 188 SKVIELLHKMKEKNVMPDASIVS 210
           S+   L  +M EK    +A+I++
Sbjct: 429 SEAFRLWDEMVEKGF--EATIIT 449



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  E+E    L+++M+S+ I P+ + +  L  G   +  V  AF+L+DEM   G
Sbjct: 383 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A   T    + G C+ G  V++ E    + +     D   Y+ LI+G  K   ++ A 
Sbjct: 443 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    L+ DV+TY+++++G    G+M +A  + L M E  V P+  T+ +LI+G 
Sbjct: 503 ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGH 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +  N   +   +  +M ++  +PD
Sbjct: 563 VTQNNLKEAFRVHDEMLQRGFVPD 586



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y + +++      +  + SKG+   +   N+L  GL ++  V+ A++++ E+ R 
Sbjct: 32  LLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRS 91

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T  I I+ LCKN  I  +      +       D+  Y+ LI+  C+ G LE A
Sbjct: 92  GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 151

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL  S+    L   V TY+ +I+GL   G+  +A  +  +M +  ++P+  T+  L+  
Sbjct: 152 FELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 211

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R +       +  +M  + V+PD    S ++ LL+KN
Sbjct: 212 CCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 250



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K   ++ A  +Y E++  G++ +V   N +   L +  ++E       +M+  G
Sbjct: 68  LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 127

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I+  C+ G + E+ EL  ++     +  +  Y+ +I+GLCK+G+   A 
Sbjct: 128 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 187

Query: 122 ELFHSLPRGVLVADVVTYSI-MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +   + +  +  D  TY+I ++    ND  MD A  +F +M    V P++++F  LI  
Sbjct: 188 GVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGL 246

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             +     + ++    MK   + PD  I +I++    +N +
Sbjct: 247 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 287



 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query: 83  VESVELFRTLRIL--KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
           V  VE+  +L +    C  +   +  L+    ++ +L    E F  L    L   +   +
Sbjct: 7   VSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACN 66

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            ++ GL   G +D A +++ ++  + V  NV T   +I+   +  +       L  M+EK
Sbjct: 67  SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 126

Query: 201 NVMPDASIVSIVVDLLAK 218
            V PD    + +++   +
Sbjct: 127 GVFPDVVTYNTLINAYCR 144



 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 37/67 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG+ +   ++ A  +  +M+ +G+ PD   + +L  G    + ++ AF++ DEM + 
Sbjct: 522 VILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 581

Query: 61  GVAADTR 67
           G   D +
Sbjct: 582 GFVPDDK 588


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+N E   A++L  EM    + PDV  +NT+  G  E  ++E+A +L +EM+  
Sbjct: 147 ILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I ID  CK G + E++   + ++ +  E D+  Y+ LI G C  G L+  
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             LF   L RG      +TY+ +I G    GQ+ +A ++F  M E  V PNV T+  LI 
Sbjct: 267 KALFDEVLERGDSPC-AITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G   + +  + ++ L+ M EK+  P+A   +I+++ L K+
Sbjct: 326 GLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKD 365



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 106/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +  AL++Y  ++ K    D V  N L     +   V +A +L+ ++    
Sbjct: 430 LIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSK 489

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ TYT  IDG CK G +  +  L   +R+ + +  +  Y+CL+  LCK G L+ A 
Sbjct: 490 IVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAW 549

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R     DVV+++IMI G    G +  A  L + M    ++P++ T+  LI+ F
Sbjct: 550 RLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRF 609

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +++    + I    KM +    PDA I   V+
Sbjct: 610 LKLGYLDEAISFFDKMVDSGFEPDAHICDSVL 641



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 109/216 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  Y + ++   A  + + ML +G   +V  HN L  GL    +  +A  L  EM+R+ 
Sbjct: 113 LLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNS 172

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G C+   + +++EL   ++   C   +  +  LID  CK+G+++ A+
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM 232

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L AD+V Y+ +I G  + G++D+   LF ++ E   +P  IT+ TLI GF
Sbjct: 233 GFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            ++ +  +  E+   M E+ V P+    + ++D L 
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLC 328



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C   E++    L+ E+L +G  P  + +NTL  G  ++ Q++ A ++F+ M   G
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  IDGLC  G   E+++    +     E +   Y+ +I+ LCK G +  A+
Sbjct: 313 VRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAV 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLIH 179
           E+   + +     D +TY+I++ GL   G +D+A  L   M  + +   P+VI++  LIH
Sbjct: 373 EIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIH 432

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  + N   + +++   + EK    D    +I+++
Sbjct: 433 GLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLN 467



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           IL+ G C   +++ A  L   ML  S    PDV+ +N L  GL + +++ +A  ++D + 
Sbjct: 392 ILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLV 451

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
               A D  T  I ++   K G + +++EL++ +   K   +   Y+ +IDG CK+G L 
Sbjct: 452 EKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLN 511

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +A  L   +    L   V  Y+ ++  L  +G +D+A  LF +M+ +   P+V++F  +I
Sbjct: 512 VAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMI 571

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G ++  +      LL  M    + PD    S +++   K
Sbjct: 572 DGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLK 611



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 36/240 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK   +  A  L  +M    ++P V  +N L   L +   +++A++LF+EMQRD 
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  ++ I IDG  K G                   DI++   L+ G+ ++G      
Sbjct: 560 NFPDVVSFNIMIDGSLKAG-------------------DIKSAESLLVGMSRAG------ 594

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                     L  D+ TYS +I+     G +D+A   F  M ++   P+     +++   
Sbjct: 595 ----------LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYC 644

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS-FTVHERQEEVDE 240
           I   E  K+ EL+ K+ +K+++ D  +   V+D +  +  +++       V + +EE D+
Sbjct: 645 ISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTDDKEERDK 704



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L RG    +V  ++I++ GL  + +  KA  L  +M  N++ P+V ++ T+I GF    E
Sbjct: 134 LKRG-FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             K +EL ++MK            I++D   K
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCK 224


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 114/214 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK K I+ AL    EM ++GIKPD  I+N +  GL +  +VE A  LF++M +  +  + 
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY   I+GLCK   I  + ELF+ +          +Y+ LIDG CK   L  A ++F  
Sbjct: 185 VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDK 244

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + R   V +VVTY+ +I GL   G++  A ++   M +  V PNV T+  LI GF ++  
Sbjct: 245 MVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 304

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +LL +M  + + P     +I+++ L + +
Sbjct: 305 VDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRAD 338



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 111/203 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+ +++E A  L+ +M+ + I P+VV +NTL  GL +  ++E A++LF EM   G
Sbjct: 155 VLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   IDG CK   +V + ++F  +    C  ++  Y+ LIDGL KSG+++ A 
Sbjct: 215 YVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAA 274

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  +  +V TYS +I G     ++D+AH L   M    +AP V+T+  L++  
Sbjct: 275 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 334

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R ++     +L   M ++   P
Sbjct: 335 CRADKLEDAFKLFRGMAQRRCHP 357



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 107/197 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK K++  A +++ +M+     P+VV + TL  GL +  +V+ A ++ D M + G
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  IDG CK   + E+ +L   +        +  Y+ L++ LC++ +LE A 
Sbjct: 285 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAF 344

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +      VVTY+ ++  L +  Q+D AH L+ +M      P+ IT+ TL  G 
Sbjct: 345 KLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGL 404

Query: 182 IRINEPSKVIELLHKMK 198
            R  +  +  EL+ KMK
Sbjct: 405 TRAGKVHEAQELMEKMK 421



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 9/235 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   IE A  L+ EM  KG  P  V +NTL  G  +   +  A  +FD+M R  
Sbjct: 190 LINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN 249

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGL K+G +  + E+   +       ++  YSCLIDG CK  R++ A 
Sbjct: 250 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH 309

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +   VVTY+I+++ L    +++ A  LF  M +    P V+T+ TL+   
Sbjct: 310 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 369

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               +      L  +M  K   PDA    I  D LA             VHE QE
Sbjct: 370 CHHKQLDGAHRLYAEMIAKGCPPDA----ITYDTLAWGLTRAGK-----VHEAQE 415



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +E A  L  +M ++   PD + +  +   L +  +++ A    +EM   G
Sbjct: 86  IINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRG 144

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   + GLC+   + E+  LF  +   +   ++  Y+ LI+GLCK+ R+E A 
Sbjct: 145 IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAY 204

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +     V   V+Y+ +I G      +  A D+F  M  +   PNV+T+ TLI G 
Sbjct: 205 ELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGL 264

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +     E+L  M +K V P+ +  S ++D   K
Sbjct: 265 SKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 301



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK    + A  L   M  K  K   + ++T+   L ++++VE A +L ++M R 
Sbjct: 50  ILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARY 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   ++ LCK   I +++     +     + D   Y+ ++ GLC+  ++E A
Sbjct: 110 A-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 168

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + +  +  +VVTY+ +I+GL    +++ A++LF +M      P  +++ TLI G
Sbjct: 169 RLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDG 228

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +     ++  KM   N +P+    + ++D L+K+
Sbjct: 229 FCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKS 267



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 34/233 (14%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  + + P     NT+  G  +  ++E+  +++  M   G       Y I I  LCK G 
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR---------GVL 132
             E+ +L  T+R+ + +    AYS +I+ LCK  R+E A EL   + R         G +
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPI 120

Query: 133 V-------------------------ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           V                          D   Y+ ++ GL  + ++++A  LF  M +  +
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            PNV+T+ TLI+G  +        EL  +M  K  +P     + ++D   K +
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKK 233



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  C+  ++E A  L+  M  +   P VV +NTL   L    Q++ A +L+ EM   
Sbjct: 329 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
           G   D  TY     GL + G + E+ EL   +++ K
Sbjct: 389 GCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTK 424


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 124/218 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K+K +  A +LYSEM++K I PDVV ++ L  G F + +++ A  LF++M  + 
Sbjct: 214 VIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILEN 273

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +DG CK G + ++  +   + I   + ++  ++ L+DG CK  +++   
Sbjct: 274 IKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGK 333

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  +VVTY  ++ G     Q++KA  +F  M +  V  NV ++  +I+GF
Sbjct: 334 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGF 393

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I +  K ++L  +M  K+++PD    + ++D L K+
Sbjct: 394 CKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKS 431



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K     L+L  +M  +GI P+ V  N L     ++  +  AF +  ++ + G   D  
Sbjct: 80  KSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDII 139

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T   FI G C  G I +++     L  L   LD  +Y  LI+GLCK G    AL+L   +
Sbjct: 140 TLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRV 199

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  + V Y+ +I G+  D  ++ A DL+ +M    ++P+V+T+  LI GF  + + 
Sbjct: 200 DGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKL 259

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              I+L +KM  +N+ PD    +I+VD   K
Sbjct: 260 KDAIDLFNKMILENIKPDVYTFNILVDGFCK 290



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 111/220 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+   I  A ++ +++L  G +PD++  NT   G     Q+ +A    D++   
Sbjct: 108 ILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVAL 167

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G    +++L R +     +L+   Y+ +IDG+ K   +  A
Sbjct: 168 GFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDA 227

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  DVVTYS +I G +  G++  A DLF  M    + P+V TF  L+ G
Sbjct: 228 FDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDG 287

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F +     K   +L  M  +++ P+ S  + +VD   K+ 
Sbjct: 288 FCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDR 327



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E   AL L   +  K ++ + V++NT+  G+ +   V  AF L+ EM    
Sbjct: 179 LINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKR 238

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I G    G + ++++LF  + +   + D+  ++ L+DG CK GRL+ A 
Sbjct: 239 ISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAK 298

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  +V T++ ++ G   D +M +   +F  M +  + PNV+T+ +L+ G+
Sbjct: 299 NVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 358

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + +K  ++ + M ++ V  +    +I+++   K
Sbjct: 359 CLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCK 395



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 117/219 (53%), Gaps = 12/219 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK   ++ A N+   M+ + IKP+V   NTL  G  +  +++    +F  M + 
Sbjct: 283 ILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQ 342

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   +DG C    + ++ ++F T+       ++ +Y+ +I+G CK  +++ A
Sbjct: 343 GIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKA 402

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  +    ++ DVVTY+ +I GL   G++  A  L  +M +    PN+IT+ ++++ 
Sbjct: 403 MKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNA 462

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                       LL K+K++ + P+    +I++  L ++
Sbjct: 463 ------------LLTKLKDQGIQPNMHTDTILIKGLCQS 489



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G+C   +I  ALN + ++++ G   D V + TL  GL ++ +   A +L   +    
Sbjct: 144 FIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKL 203

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   IDG+ K+ ++ ++ +L+  +   +   D+  YS LI G    G+L+ A+
Sbjct: 204 VQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAI 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  DV T++I++ G   +G++ KA ++   M    + PNV TF TL+ GF
Sbjct: 264 DLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGF 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  +  +   +   M ++ + P+      ++D
Sbjct: 324 CKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 356



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 23/149 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC  K++  A  +++ M  +G+  +V  +N +  G  +I +V++A KLF EM    
Sbjct: 354 LMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKH 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-------------ILKCEL--------- 99
           +  D  TY   IDGLCK+G I  + +L   +              IL   L         
Sbjct: 414 IIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQ 473

Query: 100 -DIQAYSCLIDGLCKSGRLEIALELFHSL 127
            ++   + LI GLC+SG+LE A ++F  L
Sbjct: 474 PNMHTDTILIKGLCQSGKLEAARKVFEDL 502



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++GA++L++ +L +         N +   L +         L  +M+ +G+  +  T+ 
Sbjct: 48  DVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFN 107

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+ G I  +  +   +  +  E DI   +  I G C  G++  AL  FH     
Sbjct: 108 ILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALN-FH----- 161

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
                                 DK   L   +++       +++GTLI+G  ++ E    
Sbjct: 162 ----------------------DKLVALGFHLDQ-------VSYGTLINGLCKVGETRAA 192

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++LL ++  K V  +A + + V+D ++K++
Sbjct: 193 LQLLRRVDGKLVQLNAVMYNTVIDGMSKDK 222


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCKN  I+ AL ++ +ML KG+KP  V++N +  GLF+  +   A K+F EM   G
Sbjct: 514 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESG 573

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                +TY + + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 574 TTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAK 633

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV  V TY++MI  L  +   ++A +LF+ +E++  AP+      ++   
Sbjct: 634 ELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRML 693

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  E +K    L  + E N+  +AS +S++  L ++
Sbjct: 694 LKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR 730



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ Y +    E AL ++  +L  G+ PDV  +NTL  G  +  +V++A++LF +M   
Sbjct: 127 ILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQ 186

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ D  TY   IDGLCK   +V+S  +   +       + + Y+ LI G   +G  + +
Sbjct: 187 SVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKES 246

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +    L+  VV  +  IH L    ++ +A D+F  M      PN+I++ TL+HG
Sbjct: 247 VRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHG 306

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +      + +  L++ M  K ++P+    +I+++  A+
Sbjct: 307 YAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYAR 344



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K  E++ A  L+ +M+ + + PDVV +N+L  GL +  ++ ++ ++ ++M   G
Sbjct: 163 LIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAG 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR---ILKCELDIQAYSCLIDGLCKSGRLE 118
           +  + +TY   I G    G   ESV +F+ +    ++ C ++  ++   I  LC+  R++
Sbjct: 223 IRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSF---IHALCRHNRIK 279

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A ++F S+       ++++YS ++HG   +G     + L   M    + PN   F  LI
Sbjct: 280 EAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILI 339

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + R     K + +   M+ K ++PD    + V+  L +
Sbjct: 340 NAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCR 379



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH-NTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G C + E+  A  L SEM++K I P  V + +++   LF+  +V     + D M + 
Sbjct: 408 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQT 467

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   ++G C  G + E+  L   +  +  E +   Y  L+DG CK+GR++ A
Sbjct: 468 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 527

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    +    V Y+I++HGL+   +   A  +F +M E+    ++ T+G ++ G
Sbjct: 528 LTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGG 587

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   +   LL K+   NV  D    +IV+  + K
Sbjct: 588 LCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLK 625



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY          +L + M+SKGI P+    N L         +++A  +F++MQ  G
Sbjct: 303 LLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKG 362

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT T+   I  LC+ G + +++  F  +  +        Y CLI G C  G L  A 
Sbjct: 363 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAK 422

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL    + + +    V  +S +I+ L+ +G++ +  D+   M +    PNV+TF +L+ G
Sbjct: 423 ELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  +    +   LL  M    + P+  I   +VD   KN
Sbjct: 483 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKN 521



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN   K   +    ++   M+  G +P+VV  N+L  G   +  +E AF L D M   G
Sbjct: 444 IINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 503

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   +DG CKNG I +++ +FR +     +     Y+ ++ GL ++ R   A 
Sbjct: 504 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAK 563

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +        + TY +++ GL  +   D+A+ L   +    V  ++ITF  +I   
Sbjct: 564 KMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 623

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +++    +  EL   +    ++P     ++++  L K E
Sbjct: 624 LKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEE 662



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y +   ++ A+ ++ +M +KG+ PD V   T+   L  I +++ A   F+ M   
Sbjct: 337 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 396

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-IQAYSCLIDGLCKSGRLEI 119
           GV      Y   I G C +G +V++ EL   +         ++ +S +I+ L K GR+  
Sbjct: 397 GVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAE 456

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             ++   + +     +VVT++ ++ G    G M++A  L   M    + PN   +GTL+ 
Sbjct: 457 GKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 516

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+ +       + +   M  K V P + + +I++
Sbjct: 517 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIIL 550



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 7/135 (5%)

Query: 77  CKNGYIVESVELFRTLRILKCE------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           C +G  + +VELF+ +    C         I  Y+ LID   +  R E+AL +F  L R 
Sbjct: 93  CSDGPAL-AVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRT 151

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            L  DV +Y+ +I G   +G++DKA++LF  M E +V+P+V+T+ +LI G  +  E  K 
Sbjct: 152 GLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKS 211

Query: 191 IELLHKMKEKNVMPD 205
             +L +M +  + P+
Sbjct: 212 ERVLEQMVDAGIRPN 226



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 112 CKSGRLEIALELFHSLPRGVL---VAD---VVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           C  G   +A+ELF  + R       AD   + TY+I+I       + + A  +F  +   
Sbjct: 93  CSDGP-ALAVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRT 151

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + P+V ++ TLI GF +  E  K  EL +KM E++V PD    + ++D L K +
Sbjct: 152 GLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTK 206



 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 42/89 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G C+N   + A  L  ++ +  +K D++  N +   + ++ + + A +LF  +   
Sbjct: 583 VVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTY 642

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF 89
           G+     TY + I  L K     E+  LF
Sbjct: 643 GLVPTVHTYNLMISNLIKEESYEEADNLF 671


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 112/214 (52%), Gaps = 3/214 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK   ++ A    + M S G  PD + + T+  GL    + E A +L  EM R 
Sbjct: 325 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+  FI  LC+ G I ++  L   +    CE++I  Y+ L++G C  GR++ A
Sbjct: 385 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF+S+P      + +TY+ ++ GL N  ++D A +L  +M +   APNV+TF  L+  
Sbjct: 445 LELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSF 501

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +     + IEL+ +M E    P+    + ++D
Sbjct: 502 FCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+  +++ A  L + M    + PD   +  +  GL +  +V  A  L D+M   G
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT+ ++ +CK+    +++E+   +R   C  +I  Y+ +I+G+C+ GR++ A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E  + L       D V+Y+ ++ GL    + +   +LF +M E    PN +TF  L+  F
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     + I++L +M       + ++ +IV++ + K
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 332



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+      A  +       G   DV  +NTL  G     Q++ A +L   M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--- 140

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TYT  I GLC  G + E++ L   +    C+  +  Y+ L++ +CKS     A+
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +       ++VTY+++I+G+  +G++D A +    +      P+ +++ T++ G 
Sbjct: 201 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   V EL  +M EKN MP+     ++V    +
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 95/199 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K  E    L++EM+ K   P+ V  + L         VERA ++ ++M   G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            AA+T    I I+ +CK G + ++ +    +    C  D  +Y+ ++ GLC++ R E A 
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     + VT++  I  L   G +++A  L   M E+    N++T+  L++GF
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 182 IRINEPSKVIELLHKMKEK 200
                    +EL + M  K
Sbjct: 436 CVQGRVDSALELFYSMPCK 454



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C    +  AL+L  +ML +G +P VV +  L   + +     +A ++ DEM+  G
Sbjct: 151 IIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG 210

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + I+G+C+ G + ++ E    L     + D  +Y+ ++ GLC + R E   
Sbjct: 211 CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 270

Query: 122 ELF------HSLP-------------RGVLV----------------ADVVTYSIMIHGL 146
           ELF      + +P             RG +V                A+    +I+I+ +
Sbjct: 271 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A     +M     +P+ I++ T++ G  R        ELL +M  KN  P+ 
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390

Query: 207 SIVSIVVDLLAK 218
              +  + +L +
Sbjct: 391 VTFNTFICILCQ 402



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    ++ AL L+  M     KP+ + + TL  GL    +++ A +L  EM +  
Sbjct: 431 LVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 487

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T+ + +   C+ G + E++EL   +    C  ++  Y+ L+DG+      E AL
Sbjct: 488 CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEAL 547

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H L    +  D+VTYS +I  L  + ++++A  +F  +++  + P  + +  ++   
Sbjct: 548 ELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLAL 607

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +       I+    M     MP+
Sbjct: 608 CKRCNTDGAIDFFAYMVSNGCMPN 631



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 3/169 (1%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A +L D     G A D    T  I  LC+ G   ++  + R        +D+ AY+ L+ 
Sbjct: 62  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 121

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C+ G+L+ A  L  S+P   +  D  TY+ +I GL + G++ +A  L  DM      P
Sbjct: 122 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 178

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +V+T+  L+    +     + +E+L +M+ K   P+    +++++ + +
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C  + ++ A  L +EML K   P+VV  N L     +   ++ A +L ++M   G
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +DG+  +    E++EL   L       DI  YS +I  L +  R+E A+
Sbjct: 523 CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 582

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +    +    V Y+ ++  L      D A D F  M  N   PN +T+ TLI G 
Sbjct: 583 KMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 642

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
              +   +  +LL ++  + V+
Sbjct: 643 ANEDFLKETRDLLRELCSRGVL 664



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 83/167 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   ++ A+ L  +M+  G  P+++ +NTL  G+      E A +L   +  +
Sbjct: 497 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSN 556

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  TY+  I  L +   + E++++F  ++ L        Y+ ++  LCK    + A
Sbjct: 557 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGA 616

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           ++ F  +     + + +TY  +I GL N+  + +  DL  ++    V
Sbjct: 617 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 123/226 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y +   +   L  +  ML  G  P V+  N L  GL +++  +R +++++EM+R 
Sbjct: 238 MLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERF 297

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +  T+ I    LCK+G   +  +    +     + DI  Y+ LI+  C+ GRL+ A
Sbjct: 298 GIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDA 357

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + R  +V D+V+Y+ +++GL  +G++ +AH LF  M    ++P+++T+ TLIHG
Sbjct: 358 FYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHG 417

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           + +  +  +   LLH M    + PD+    ++V+   K    L++L
Sbjct: 418 YCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSAL 463



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +  CK+ +         +M  +G  PD+V +NTL        +++ AF L+  M R 
Sbjct: 308 ILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRR 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +YT  ++GLCK G + E+ +LF  +       DI  Y+ LI G CK G+++ +
Sbjct: 368 GVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQES 427

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L H +    +  D  T  +++ G   +G+   A +L ++++   V+ +   +  LI  
Sbjct: 428 RSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVA 487

Query: 181 FIRINEPSKVIELLHKMKE 199
             R N P     LL +M +
Sbjct: 488 LCRENRPFAAKNLLERMSQ 506



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 112/242 (46%), Gaps = 2/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   +  A  L+  M+ +G+ PD+V +NTL  G  +  +++ +  L  +M  +G
Sbjct: 379 LMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNG 438

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D+ T  + ++G  K G  + ++ L   L+     +    YS LI  LC+  R   A 
Sbjct: 439 ISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAK 498

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     ++  Y+ +I        + +A  L ++M +  + PN+ T+  +J   
Sbjct: 499 NLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCL 558

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEI-SLNSLPSFTVHERQEEVD 239
            R++   +   L+ +M     +PD  I  ++      +N+I    SL SF   E Q    
Sbjct: 559 SRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDT 618

Query: 240 ES 241
           ES
Sbjct: 619 ES 620



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 20/176 (11%)

Query: 50  AFKLFDEMQRD-GVAADTRTYTIFIDGLCKN-------GYIVESVEL----------FRT 91
           A   F+ ++ D G+   T+ Y I +  L  +        ++ E VEL          F+ 
Sbjct: 162 ALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDLPGEDVFKN 221

Query: 92  LRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           L +    C  D   +  L+    + GR+   L  F  + R   V  V+T + +++GL   
Sbjct: 222 LILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKL 281

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              D+  +++ +ME   +APN+ TF  L H   +  +  KV + L KM+E+   PD
Sbjct: 282 NYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD 337



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 88/218 (40%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ GY K  +   ALNL  E+   G+     I++ L + L   ++   A  L + M +D
Sbjct: 448 VLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQD 507

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   I   C+   I E++ L   +   + + ++  Y  +J  L +  R    
Sbjct: 508 GHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEG 567

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +     + D+     + +G   +  +DKA  L     +     +  +F  LI  
Sbjct: 568 ESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRI 627

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                + ++ +E+   M +  ++P+      V+D L K
Sbjct: 628 TSAKGDIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWK 665



 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +C+   I  AL L  EM+ K IKP++  +  +   L  + +      L  EM   G
Sbjct: 519 LIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASG 578

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL---DIQAYSCLIDGLCKSGRLE 118
              D         G C+   I ++  L   L     E    D ++++ LI      G + 
Sbjct: 579 XLPDLEICRALFYGYCRENDIDKAESL---LSFXAKEFQIHDTESFNALIRITSAKGDIA 635

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            +LE+   + +  L+ + +T   +I GL+   ++D A
Sbjct: 636 RSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSA 672


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 1/211 (0%)

Query: 7   CKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           CK+K+   A N++ +   + G+KP + ++N L  G  E+H VE A+ LF+EM+  G A D
Sbjct: 765 CKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPD 824

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
           T TY   ID   K+G I E  +L+  +    C+ +   Y+ +I  L KS RL+ A++L++
Sbjct: 825 TFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYY 884

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
           +L  G       T+  +I GL   G++D AH++F  M      PN   +  L++G+ ++ 
Sbjct: 885 NLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLG 944

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
                 E   +M ++ + PD    +I+VD+L
Sbjct: 945 HVDTACEFFKRMVKEGIRPDLKSYTILVDIL 975



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ + K+     AL  + +M ++GI P++V  N     L E+ ++  A  +F+E++  
Sbjct: 444 LLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSS 503

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D+ TY + +    K G + E+++L   +  ++CE D+   + LID L K+GR+E A
Sbjct: 504 GLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEA 563

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    L   VVTY+I++ GL  +GQ+ KA  LF  M  +  +PN ITF TL+  
Sbjct: 564 WQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDC 623

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
             + +E    +++ +KM   N  PD  +  +I+   + +N+I
Sbjct: 624 LCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQI 665



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L +G+CK      AL +Y  M+S+G+KP +   + L +   +   ++    L +EM+  
Sbjct: 204 LLQSGFCKE-----ALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESM 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYTI I  L ++G I E+  + + +    C  D+  Y+ LID LC + +L+ A
Sbjct: 259 GLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDA 318

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +       D VTY  ++    + G +DK   ++ +ME +  AP+V+TF  L++ 
Sbjct: 319 MCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNA 378

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
             +    ++  +LL  M+++ V+P+  +  +++  LL  N +
Sbjct: 379 LCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRL 420



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C  ++++ A+ L+++M S   KPD V + TL     +   +++  K++ EM+ D
Sbjct: 304 VLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEAD 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D  T+TI ++ LCK G I E+ +L  T+R      ++  Y+ LI GL ++ RL+ A
Sbjct: 364 GYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDA 423

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF ++    +     TY ++I      G   KA + F  M+   +APN++     ++ 
Sbjct: 424 LDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYS 483

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +    +   + +++K   + PD+   ++++   +K
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSK 521



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 103/180 (57%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G  K+  ++ A  ++  M+  G +P+  I+N L  G  ++  V+ A + F  M ++G
Sbjct: 901  LIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEG 960

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YTI +D LC  G + +++  F  L+    + D+ AY+ +I+GL +S R E AL
Sbjct: 961  IRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEAL 1020

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             LFH +    +V D+ TY+ +I  L   G +++A  ++ +++   + PNV T+  LI G+
Sbjct: 1021 SLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGY 1080



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K + I+  + L  EM S G++P++  +      L    +++ A+++   M  DG   D  
Sbjct: 241 KRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVV 300

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TYT+ ID LC    + +++ LF  ++    + D   Y  L+D     G L+   +++  +
Sbjct: 301 TYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEM 360

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DVVT++I+++ L   G++++A DL   M +  V PN+ T+ TLI G +R N  
Sbjct: 361 EADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRL 420

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
              ++L   M+   V P A    +++D   K+     +L +F
Sbjct: 421 DDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETF 462



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  CK   I  A +L   M  +G+ P++  +NTL  GL   ++++ A  LF  M+  
Sbjct: 374 ILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESL 433

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY + ID   K+G+  +++E F  ++      +I A +  +  L + GRL  A
Sbjct: 434 GVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEA 493

Query: 121 LELFHSLPRGVLVADVVTYSIM-----------------------------------IHG 145
             +F+ L    L  D VTY++M                                   I  
Sbjct: 494 KAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDT 553

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           LY  G++++A  +F  MEE  +AP V+T+  L+ G  +  +  K ++L   M      P+
Sbjct: 554 LYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPN 613

Query: 206 ASIVSIVVDLLAKNE 220
               + ++D L KN+
Sbjct: 614 TITFNTLLDCLCKND 628



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 105/183 (57%), Gaps = 1/183 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  Y K  +++ A+ L SEM     +PDV++ N+L   L++  +VE A+++F  M+  
Sbjct: 514 MMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A    TY I + GL K G I ++V+LF ++    C  +   ++ L+D LCK+  +++A
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F+ +       DV+T++ +IHG     Q+  A  LF  M++  + P+ +T  TL+ G
Sbjct: 634 LKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKK-LLRPDHVTLCTLLPG 692

Query: 181 FIR 183
            I+
Sbjct: 693 VIK 695



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 111/204 (54%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+ + K+ +I    +LY EML++G KP+ + +N +   L + +++++A  L+  +    
Sbjct: 831  LIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGD 890

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             +    T+   IDGL K+G + ++ E+F  +    C  +   Y+ L++G  K G ++ A 
Sbjct: 891  FSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTAC 950

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            E F  + +  +  D+ +Y+I++  L   G++D A   F  +++  + P+++ +  +I+G 
Sbjct: 951  EFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGL 1010

Query: 182  IRINEPSKVIELLHKMKEKNVMPD 205
             R     + + L H+M+ + ++PD
Sbjct: 1011 GRSQRTEEALSLFHEMQNRGIVPD 1034



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 104/201 (51%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +++EM + G  PDVV    L   L +  ++  AF L D M++ GV  +  TY   I GL 
Sbjct: 356 IWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLL 415

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           +   + ++++LF  +  L  E     Y  LID   KSG    ALE F  +    +  ++V
Sbjct: 416 RANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIV 475

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
             +  ++ L   G++ +A  +F +++ + +AP+ +T+  ++  + ++ +  + I+LL +M
Sbjct: 476 ACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEM 535

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            +    PD  +++ ++D L K
Sbjct: 536 SKVQCEPDVIVINSLIDTLYK 556



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 2/235 (0%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI+G+ +   +E A NL+ EM S G  PD   +N+L     +  ++   F L+DEM   
Sbjct: 795  LLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTR 854

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G   +T TY + I  L K+  + ++++L+  L           +  LIDGL KSGRL+ A
Sbjct: 855  GCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDA 914

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             E+F  +       +   Y+I+++G    G +D A + F  M +  + P++ ++  L+  
Sbjct: 915  HEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDI 974

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
                      +    K+K+  + PD    +++++ L +++ +  +L  F  HE Q
Sbjct: 975  LCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLF--HEMQ 1027



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 98/178 (55%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++I+   K+  ++ A++LY  ++S    P       L  GL +  +++ A ++FD M   
Sbjct: 865  MVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHY 924

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G   ++  Y I ++G  K G++  + E F+ +       D+++Y+ L+D LC +GR++ A
Sbjct: 925  GCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDA 984

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            L  F  L +  L  D+V Y++MI+GL    + ++A  LF +M+   + P++ T+ +LI
Sbjct: 985  LHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLI 1042



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 38/255 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           +I+G+ K  +I+ A+ L+ +M  K ++PD V   TL  G+ +  Q+E AF++        
Sbjct: 655 IIHGFIKQNQIKNAIWLFHQM-KKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQV 713

Query: 54  -------FDEMQRDGVAADTRTYTIFIDG---------------------LCKNGYIVES 85
                  F E    G+  +  T    + G                     LCK+     +
Sbjct: 714 GSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVA 773

Query: 86  VELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
             +F +  + L  +  ++ Y+ LIDG  +   +E+A  LF  +       D  TY+ +I 
Sbjct: 774 RNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLID 833

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                G++++  DL+ +M      PN IT+  +I   ++ N   K ++L + +   +  P
Sbjct: 834 AHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSP 893

Query: 205 DASIVSIVVDLLAKN 219
                  ++D L K+
Sbjct: 894 TPCTFGPLIDGLLKS 908



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 97/206 (47%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           ++ +E    ++  M  + I+ +V  +  +F  LF    + +A    ++M+  G   +  +
Sbjct: 137 HRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYS 196

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y   I  L ++G+  E++E++R +     +  ++ +S L+    K   ++  + L   + 
Sbjct: 197 YNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEME 256

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              L  ++ TY+I I  L  DG++D+A+ +   M+++   P+V+T+  LI       +  
Sbjct: 257 SMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLD 316

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVD 214
             + L  KMK  +  PD      ++D
Sbjct: 317 DAMCLFTKMKSSSHKPDKVTYVTLLD 342


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           KNK+++ A NL+++M++ G+  + + + ++    F   ++E A KL D+M ++  A D  
Sbjct: 300 KNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVV 359

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TYTI I  LCK   I ++  + + +R   CE +I  Y+ LI GLC   R E ALEL   +
Sbjct: 360 TYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLM 419

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +G +  ++ TY+I+ HGL    ++D+A ++F +     + PN +T+ TL++G+ R +  
Sbjct: 420 EQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRL 479

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP-SFTVHERQE 236
            + +++L +M + +  PD    + ++  L +     N LP +  +H+  E
Sbjct: 480 IEAMDILKEMHQNDCTPDHVTYTTLIQGLVQG----NQLPDALRMHDEME 525



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 99/217 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK K IE A  +  +M   G +P++  +N L  GL  + + E A +L   M++ 
Sbjct: 363 IVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQG 422

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TYTI   GLCK   +  + E+F        + +   Y+ L++G C+  RL  A
Sbjct: 423 GVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEA 482

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   + +     D VTY+ +I GL    Q+  A  +  +ME      N  T   L  G
Sbjct: 483 MDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARG 542

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             R+           +MK++     AS   + +  L+
Sbjct: 543 LARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLS 579



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 2/210 (0%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           +++E A+ L  +M+     PDVV +  +   L +   +E+A+ +  +M+ +G   +  TY
Sbjct: 337 EKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTY 396

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH-SLP 128
              I GLC      E++EL   +       +I  Y+ L  GLCK  RL+ A E+F+ +L 
Sbjct: 397 NALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALA 456

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           RG L  + VTY+ +++G     ++ +A D+  +M +N   P+ +T+ TLI G ++ N+  
Sbjct: 457 RG-LKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLP 515

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +  +M+ K    +   ++I+   LA+
Sbjct: 516 DALRMHDEMENKGYDVNFDTLNILARGLAR 545



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +G CK + ++ A  +++E L++G+KP+ V +NTL  G     ++  A  +  EM ++
Sbjct: 433 ILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQN 492

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYT  I GL +   + +++ +   +     +++    + L  GL + G  + A
Sbjct: 493 DCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDA 552

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              +  +           Y + IH L   G+M++A  L  +M     +PN+ T+ T+I G
Sbjct: 553 SIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKG 612

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R         +L+ M E  + PD    +I++
Sbjct: 613 FCRQGRLDDADAMLNFMIENGIGPDTGSYNILI 645



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC+   +  A+++  EM      PD V + TL  GL + +Q+  A ++ DEM+  G
Sbjct: 469 LLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKG 528

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T  I   GL + G   ++   +R ++          Y   I  L  +G +E A 
Sbjct: 529 YDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQ 588

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +       ++ TY+ MI G    G++D A  +   M EN + P+  ++  LI  F
Sbjct: 589 ALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEF 648



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI--QAYSCLIDG 110
           L  +MQ  G          F+    ++G   ES+E F  ++ +  E  +   AY+ ++  
Sbjct: 238 LLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVS 297

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L K+ +L++A  LF  +    +  + +TY+ MI   +   +M+ A  L  DM +N  AP+
Sbjct: 298 LVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPD 357

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           V+T+  +I    +     +   +L KM+E    P+
Sbjct: 358 VVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPN 392



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 6/201 (2%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           +++ + PD V+   +     +     R F+  D  +++G   +T  Y   ID L +    
Sbjct: 177 MAQDLNPDAVVK--VLNLQTDAQNALRFFQWAD--KQEGYDHNTDAYFTMIDILGRAKMF 232

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV--TYS 140
            E   L + ++    E+        +    +SGR + +LE F+ +        ++   Y+
Sbjct: 233 TELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYN 292

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            ++  L  + ++D A +LF  M  N V+ N +T+ ++I  F    +    ++LL  M + 
Sbjct: 293 SVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQN 352

Query: 201 NVMPDASIVSIVVDLLAKNEI 221
           N  PD    +IV+  L K ++
Sbjct: 353 NYAPDVVTYTIVISALCKRKM 373



 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           E+E A  L  EM++KG  P++  +NT+  G     +++ A  + + M  +G+  DT +Y 
Sbjct: 583 EMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYN 642

Query: 71  IFIDGLCKNGYIVESVELFRT 91
           I I      G   ++ +L+ T
Sbjct: 643 ILIKEFHNQGRTQDADQLYAT 663


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+   K  ++E A     E+  +G+KPD V      +G  +  ++  A K FDEM   G
Sbjct: 226 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT+ I+G  K G ++E++ +FR L  L    D+Q  S  I GL K+GR++ AL
Sbjct: 286 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L    LV DV TYS +I G    G+++KA +L  +M    +APN+  +  L+ G 
Sbjct: 346 KVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGL 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +  +  +L   M EK + PD+   S ++D   K+E
Sbjct: 406 CKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 444



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 110/212 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K   +  AL+++  + + G+ PDV   +    GL +  +V+ A K+F E++  
Sbjct: 295 VLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 354

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+  I G CK G + ++ EL   + +     +I  Y+ L+DGLCKSG ++ A
Sbjct: 355 GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 414

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +P   L  D VTYS MI G      + +A  LF +M    V P+   +  L+HG
Sbjct: 415 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 474

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             +  +  K + L  +M +K      S  +++
Sbjct: 475 CCKEGDMEKAMNLFREMLQKGFATTLSFNTLI 506



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I GY K  ++  A   + EML  G+ P+  ++  L  G F+   +  A  +F  +   G
Sbjct: 261 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D +T + FI GL KNG + E++++F  L+      D+  YS LI G CK G +E A 
Sbjct: 321 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  ++  Y+ ++ GL   G + +A  LF  M E  + P+ +T+ T+I G+
Sbjct: 381 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    ++   L H+M  K V P + + + +V
Sbjct: 441 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C  K++  A  L  +M   G+KP+VV+++TL +G     ++E A +L D M   G
Sbjct: 156 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG 215

Query: 62  VA-----------------------------------ADTRTYTIFIDGLCKNGYIVESV 86
           VA                                    D  T+  FI G  K G + E+ 
Sbjct: 216 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 275

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + F  +       +   Y+ LI+G  K+G L  AL +F  L    ++ DV T S  IHGL
Sbjct: 276 KYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGL 335

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++ +A  +F +++E  + P+V T+ +LI GF +  E  K  EL  +M  K + P+ 
Sbjct: 336 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 395

Query: 207 SIVSIVVDLLAKN 219
            I + +VD L K+
Sbjct: 396 FIYNALVDGLCKS 408



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 104/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+  G C+ K +  A   + EM   G+KPD    + L  G      ++   ++ D M   
Sbjct: 15  IITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSC 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + I GLCK G + ++ E+ + +  L C+ + + +  LI+G C+   +  A
Sbjct: 75  GIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   + +  LV   V+Y  MI+GL +   +  A+ L   M  + + PNV+ + TLI G
Sbjct: 135 LELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMG 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +       +   LL  M    V PD    + ++  L+K
Sbjct: 195 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 232



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 19/219 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK++ +  A +L+ EM SKG++P   ++N L  G  +   +E+A  LF EM + G
Sbjct: 436 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A  T ++   IDG CK+  I E+ +LF+ +   +   D   Y+ +ID  CK+G++E A 
Sbjct: 496 FAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 554

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L+ D V                    LF  M    V P+ +T+G +I+  
Sbjct: 555 LLFKEMQERNLIVDTV------------------FALFEKMVAKGVKPDEVTYGLVIYAH 596

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + +   +  +L  ++  K ++   +I  +++  L K E
Sbjct: 597 CKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 635



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 105/205 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +  +I+  L +   M+S GI  +++ +N L  GL +  ++E+A ++   M   G
Sbjct: 51  LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++RT+ + I+G C+   +  ++EL   +          +Y  +I+GLC    L +A 
Sbjct: 111 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +VV YS +I G  ++G++++A  L   M  + VAP++  +  +I   
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +  +  +    L +++ + + PDA
Sbjct: 231 SKAGKMEEASTYLLEIQGRGLKPDA 255



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 94/192 (48%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  KG+ P+   +  +  GL    ++  A   F+EMQ+ G+  D    +  IDG  + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           I E + +   +      +++  Y+ LI GLCK G++E A E+   +       +  T+ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I G   +  M +A +L  +ME+  + P+ +++G +I+G     + S   +LL KM    
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 202 VMPDASIVSIVV 213
           + P+  + S ++
Sbjct: 181 LKPNVVVYSTLI 192



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 19/197 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----------- 50
           LI+GYCK+ +I+ A  L+ EM++K I PD V + T+     +  ++E A           
Sbjct: 505 LIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN 564

Query: 51  ------FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA- 103
                 F LF++M   GV  D  TY + I   CK   +VE+ +L R   + K  L     
Sbjct: 565 LIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKL-RDEVVGKGMLTKGTI 623

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           +  LI  LCK   L  A +L   +    L   +   S ++   +  G+MD+A  +F  ++
Sbjct: 624 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVK 683

Query: 164 ENAVAPNVITFGTLIHG 180
              + P+  T   L++G
Sbjct: 684 SLGLVPDTTTLIDLVNG 700



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N  ++    L+ +M++KG+KPD V +  +     +   +  AFKL DE+   G+     
Sbjct: 563 RNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 622

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            + + I  LCK   + E+ +L   +  L  +  + A S L+    ++G+++ A  +F  +
Sbjct: 623 IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 682

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
               LV D  T   +++G  ND   + A +L
Sbjct: 683 KSLGLVPDTTTLIDLVNGNLNDTDSEDARNL 713



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 51/112 (45%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            Y+ +  GLC++ R+  A   F  + +  L  D    S +I G   +G +D+   +   M
Sbjct: 12  TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 71

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  N+IT+  LIHG  +  +  K  E+L  M      P++    ++++
Sbjct: 72  VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIE 123



 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   CK +++  A  L  EM   G+KP +   +TL     E  +++ A ++F+ ++  
Sbjct: 626 LLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSL 685

Query: 61  GVAADTRTYTIFIDG 75
           G+  DT T    ++G
Sbjct: 686 GLVPDTTTLIDLVNG 700



 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 47/110 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I  +CK   +  A  L  E++ KG+     IH+ L   L +   +  A KL DEM   
Sbjct: 591 LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGEL 650

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           G+       +  +    + G + E+  +F  ++ L    D      L++G
Sbjct: 651 GLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 700


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 6/244 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  ++   L L  EM +KG  P +V + +L   L +   +E+   LF EM++ 
Sbjct: 244 VLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKR 303

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ + + Y   ID LCK     +++ + + +    C+ DI  ++ LI GLC  G +  A
Sbjct: 304 GLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 363

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                   R  L  + ++Y+ +IHG    G++  A DL ++M      P+V+TFG LIHG
Sbjct: 364 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHG 423

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
            +   + S+ + +  KM E+ V PD +I ++++  L K  +    LP+       EE+ E
Sbjct: 424 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHM----LPA--AKNILEEMLE 477

Query: 241 SNVK 244
            NV+
Sbjct: 478 KNVQ 481



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 92/183 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   +  A N+  EML K ++PD  ++ TL  G      +  A K+F+ M+  
Sbjct: 454 VLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHK 513

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +    I G C+ G + E++     +R + C  D   Y+ +I G  K G L  A
Sbjct: 514 GVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGA 573

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     + +     +VVTYS +I+G    G  D A  LF +M+  A++PNV+T+  LI  
Sbjct: 574 LRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGS 633

Query: 181 FIR 183
             +
Sbjct: 634 LFK 636



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +++ +  A  ++  M  KG++PD+V  N +  G  +   +  A      M++ G
Sbjct: 490 LIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG 549

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  I G  K G +  ++     +   KC+ ++  YS LI+G CK+G  + A 
Sbjct: 550 CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAE 609

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++    L  +VVTY+I+I  L+   ++ +A   F  M  N  +PN +T   L++G 
Sbjct: 610 GLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 669



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 106/224 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G     ++  AL +  +M  + + PDV I+N L  GL + H +  A  + +EM    
Sbjct: 420 LIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKN 479

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y   IDG  ++  + ++ ++F  +       DI + + +I G C+ G +  A+
Sbjct: 480 VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAI 539

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
               ++ +   + D  TY+ +I G    G ++ A     DM +    PNV+T+ +LI+G+
Sbjct: 540 LCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGY 599

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  +      L   M+ + + P+    +I++  L K +  L +
Sbjct: 600 CKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRA 643



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 85/180 (47%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P+V   N L   L E  + + A KL+DEM  +   AD  +  + + GLC  G + E 
Sbjct: 164 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEG 223

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           ++L        C   +  Y+ LIDG C+ G +   L L   +     +  +VTY  +I+ 
Sbjct: 224 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINC 283

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G ++K   LFL+M +  ++PNV  + ++I    +    ++ + +L +M      PD
Sbjct: 284 LGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPD 343



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 26/220 (11%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY K   + GAL    +M+ +  KP+VV +++L  G  +    + A  LF  MQ + 
Sbjct: 560 VISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEA 619

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-----------IQAYSCLIDG 110
           ++ +  TYTI I  L K   ++ +   F T+ +  C  +                C+I+ 
Sbjct: 620 LSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINS 679

Query: 111 LCKS-----GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           +C +     G+ +  L +F  L   +       Y+ +I  L     + +A D    M + 
Sbjct: 680 ICCNTSEVHGK-DALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKK 738

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              PN ITF +L++GF  + +          M  + ++P+
Sbjct: 739 GYVPNPITFLSLLYGFCSVGK---------SMNWRTILPN 769


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+   I+ A  ++ EML  GI P VV ++T+  GLF   +   A +L+  M   G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y I ++GL KN  + E+ +LF++L     +L+I  ++ +I  L KSGR E A+
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAM 678

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++    LV DV TY ++   L  +G +++  DLF  ME++   PN      L+   
Sbjct: 679 HLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRL 738

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +   + ++    L K+ EKN   +AS  ++++ LL+++E
Sbjct: 739 LHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDE 777



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+    +++ A NL+ EM+ +GI+P+VV + T+  GL +   V+RA  +F +M   
Sbjct: 208 IVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   I G    G   E V +   +     + D   Y  L++ LC +GR   A
Sbjct: 268 GVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF S+ R  +  +V  Y I+IHG    G + + HDL   M EN ++P+   F  +   
Sbjct: 328 RFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTA 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     + + + +KMK++ + PD      ++D L K
Sbjct: 388 YAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCK 425



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C   + E A   Y EML++GI+PDVV  NT+   L    QV +A +L D M+R G
Sbjct: 454 LVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG 513

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +YT  I G C  G I E+ +    +  +  + D   Y+ L+ G C++GR++ A 
Sbjct: 514 TRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAY 573

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + R  +   VVTYS ++HGL+   +  +A +L+L+M  +    N+  +  +++G 
Sbjct: 574 GVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGL 633

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N   +  +L   +  K+   + +  +I++  L K+
Sbjct: 634 SKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKS 671



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L+ G+C  K  E AL L   M     +   P+VV +  +  G F   QV++A+ LF EM 
Sbjct: 171 LLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMM 230

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+  +  TYT  IDGLCK   +  +  +F+ +     + D   Y+CLI G    G+ +
Sbjct: 231 DRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWK 290

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             + +   +    L  D  TY  +++ L N+G+  +A  LF  M    + PNV  +G LI
Sbjct: 291 EVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILI 350

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           HG+      S++ +LL+ M E  + PD  I +I+    AK  +   ++  F   ++Q
Sbjct: 351 HGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A+  +++M+++G+ P++ + N+L  GL  + + E+A + + EM   G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   +   +  LC  G ++++  L   +  +     + +Y+ LI G C  GR++ A 
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAA 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +    L  D  TY+ ++HG    G++D A+ +F +M  N + P V+T+ T++HG 
Sbjct: 539 KSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGL 598

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                 S+  EL   M       +  I +I+++ L+KN
Sbjct: 599 FTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKN 636



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 11  EIEGALNLYSEMLSK---GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           E E  ++L++ M+ +    + PD   ++ L      + ++E  F  F  + + G   +  
Sbjct: 71  ESELVVSLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNI 130

Query: 68  TYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
                + GLC    + E+++ L + +  L C  D+ +Y+ L+ G C   R E ALEL H 
Sbjct: 131 VINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHM 190

Query: 127 LPRG---VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +          +VV+Y+I+I+G + +GQ+DKA++LFL+M +  + PNV+T+ T+I G  +
Sbjct: 191 MADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCK 250

Query: 184 INEPSKVIELLHKMKEKNVMPD 205
                +   +  +M +K V PD
Sbjct: 251 AQVVDRAEGVFQQMIDKGVKPD 272



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 36/256 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  ++ +M+ KG+KPD   +N L  G   I + +   ++ +EM   G
Sbjct: 244 VIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
           +  D  TY   ++ LC NG   E+  LF ++     + ++  Y  LI G    G L    
Sbjct: 304 LKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMH 363

Query: 118 -------------------------------EIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                          + A+ +F+ + +  L  DVV Y  +I  L
Sbjct: 364 DLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDAL 423

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A   F  M    VAPN+  F +L++G   +++  K  E   +M  + + PD 
Sbjct: 424 CKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDV 483

Query: 207 SIV-SIVVDLLAKNEI 221
               +I+ +L  K ++
Sbjct: 484 VFFNTILCNLCTKGQV 499



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           ILI  +C+   +E     +  +L  G + + ++ N L  GL +  ++  A   L   M  
Sbjct: 99  ILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPE 158

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   D  +Y   + G C      E++EL   +   +   C  ++ +Y+ +I+G    G+
Sbjct: 159 LGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQ 218

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A  LF  +    +  +VVTY+ +I GL     +D+A  +F  M +  V P+  T+  
Sbjct: 219 VDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNC 278

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LIHG++ I +  +V+ +L +M    + PD      +++ L  N
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNN 321



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY     +    +L + M+  G+ PD  I N +F    +   ++ A  +F++M++ 
Sbjct: 348 ILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D   Y   ID LCK G + ++V  F  +       +I  ++ L+ GLC   + E A
Sbjct: 408 GLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKA 467

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E +  +    +  DVV ++ ++  L   GQ+ KA  L   ME     P VI++ TLI G
Sbjct: 468 KEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGG 527

Query: 181 FI---RINEPSKVIELL 194
                RI+E +K ++++
Sbjct: 528 HCLVGRIDEAAKSLDVM 544



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 93/203 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  C N     A  L+  M+ KGIKP+V I+  L  G      +     L + M  +G
Sbjct: 314 LLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   + I      K   I E++ +F  ++      D+  Y  LID LCK GR++ A+
Sbjct: 374 LSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAV 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    +  ++  ++ +++GL    + +KA + + +M    + P+V+ F T++   
Sbjct: 434 LKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNL 493

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
               +  K   L+  M+     P
Sbjct: 494 CTKGQVMKAQRLIDLMERVGTRP 516



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG  KN  ++ A  L+  + SK  + ++   N +   LF+  + E A  LF  +   
Sbjct: 628 IILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSY 687

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+  D  TY +  + L + GY+ E  +LF  +
Sbjct: 688 GLVPDVFTYCLIAENLIEEGYLEEFDDLFSAM 719


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 130 ILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 189

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   I ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 190 GVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLA 249

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 250 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDG 309

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N   D  + + ++  L +   S+++
Sbjct: 310 CCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDA 354



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 166 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 226 LVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   DG +D A +    M +     + + +  LI G 
Sbjct: 286 HLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGL 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R        ++L +M    + PDA   +++++   K 
Sbjct: 346 CREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 383



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 236 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK+G +  + E  + +      LD   Y+ LI GLC+ G    A 
Sbjct: 296 LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAE 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 356 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 159

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + ++D A++LF 
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 219

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 220 EMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 264



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/217 (18%), Positives = 97/217 (44%), Gaps = 17/217 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C ++ +  A +L   ++S+  K      + +F  +FE    +R+           
Sbjct: 8   MIHFLCTHQMLSEAKSLIQVVVSRKGKGSA---SAVFAAIFETKGTQRS----------- 53

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++  
Sbjct: 54  ---DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVW 110

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+
Sbjct: 111 GFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGY 170

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           IR+ +  +   L   M    V PD    S++++ L K
Sbjct: 171 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 207


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 121/213 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ +I  AL ++S+M  KG+K DVV ++ L  G  ++H +E A K F E+   G
Sbjct: 610 LIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIG 669

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  Y   I G      +  ++ L + +   K   D+Q Y+ +I GL K G+L +AL
Sbjct: 670 LTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLAL 729

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +    +V D+V Y+++I+GL N+GQ++ A  +  +M+ N + P+V+ +  LI G 
Sbjct: 730 DLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGN 789

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R     +   L  +M +K ++PD +   I+V+
Sbjct: 790 FREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING  K   +    +  +  + +G     + +N++  G F+   V+ A   + EM   G
Sbjct: 540 VINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESG 599

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TYT  IDGLCK+  I  ++E+   ++    +LD+ AYS LIDG CK   +E A 
Sbjct: 600 ISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESAS 659

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  L    L  + V Y+ MI G  +   M+ A +L  +M +N V  ++  + ++I G 
Sbjct: 660 KFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGL 719

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++  + S  ++L  +M  K+++PD  + +++++ L+ N
Sbjct: 720 LKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNN 757



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 36/258 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK   ++ A ++   +L +G+KP+ V +  L  G F+    ERAF +F++M    
Sbjct: 470 LILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAAN 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE---------------------------------- 87
           +A    T+   I+GL K G + E+ +                                  
Sbjct: 530 IAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSAL 589

Query: 88  -LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
             +R +       D+  Y+ LIDGLCKS ++ +ALE+   +    +  DVV YS +I G 
Sbjct: 590 LAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGF 649

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                M+ A   F ++ +  + PN + + ++I GFI +N     + L  +M +  V  D 
Sbjct: 650 CKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDL 709

Query: 207 SI-VSIVVDLLAKNEISL 223
            +  SI+  LL + ++SL
Sbjct: 710 QVYTSIIGGLLKEGKLSL 727



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 104/184 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++E A   ++E+L  G+ P+ V++N++  G   ++ +E A  L  EM ++ 
Sbjct: 645 LIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNK 704

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D + YT  I GL K G +  +++L+  +       DI  Y+ LI+GL  +G+LE A 
Sbjct: 705 VPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENAS 764

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +   V+ Y+I+I G + +G + +A  L  +M +  + P+  T+  L++G 
Sbjct: 765 KILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGK 824

Query: 182 IRIN 185
           ++++
Sbjct: 825 LKVS 828



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 109/208 (52%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A NL+ +M+SKGI P +V +N L +G  +   +++A+ +   +   G+  +  TYT
Sbjct: 444 KVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYT 503

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           + IDG  K G    +  +F  +           ++ +I+GL K+GR+    +  ++  + 
Sbjct: 504 LLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQ 563

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
             V+  +TY+ +I G + +G +D A   + +M E+ ++P+VIT+ +LI G  + N+    
Sbjct: 564 GFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLA 623

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +E+   MK K +  D    S ++D   K
Sbjct: 624 LEMHSDMKYKGMKLDVVAYSALIDGFCK 651



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K  ++E A  LY+ M   GI+P+V I N+L  G  E + +E A+ LFDE    
Sbjct: 365 VLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEH 424

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY I +  L + G + E+  L+  +        + +Y+ LI G CK G ++ A
Sbjct: 425 GI-TNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKA 483

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +  S+    L  + VTY+++I G +  G  ++A  +F  M    +AP   TF T+I+G
Sbjct: 484 YSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVING 543

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    S+  + L+   ++  +  +   + ++D
Sbjct: 544 LGKTGRVSETQDKLNNFIKQGFVSTSITYNSIID 577



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC   ++  AL L+ E++  G+ PDVVI + L  G  ++  +E+A++L+  M+  G
Sbjct: 331 LMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMG 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +       ++G  +   +  +  LF    +     ++  Y+ L+  L + G++  A 
Sbjct: 391 IQPNVFIVNSLLEGFHEQNLLEHAYGLFDE-AVEHGITNVVTYNILLKWLGELGKVNEAC 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    +   +V+Y+ +I G    G MDKA+ +   + E  + PN +T+  LI GF
Sbjct: 450 NLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGF 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +   +  +M   N+ P     + V++ L K
Sbjct: 510 FKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGK 546



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 110/201 (54%), Gaps = 3/201 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL L  EM+S G+  +V++  +L  G   +  V  A +LFDE+   GV  D   +++ I+
Sbjct: 309 ALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLIN 368

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-HSLPRGVLV 133
           G  K G + ++ EL+  ++++  + ++   + L++G  +   LE A  LF  ++  G  +
Sbjct: 369 GCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHG--I 426

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            +VVTY+I++  L   G++++A +L+  M    + P+++++  LI G  +     K   +
Sbjct: 427 TNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSM 486

Query: 194 LHKMKEKNVMPDASIVSIVVD 214
           L  + E+ + P+A   ++++D
Sbjct: 487 LKSILERGLKPNAVTYTLLID 507



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 87/181 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++    K  + E     + E   +G++ D   ++ L   +     +  A +L  EM+  
Sbjct: 225 VVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREF 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TYT  I    K G  VE++ L   +  +   +++     L+ G C  G + +A
Sbjct: 285 GWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  +  G +V DVV +S++I+G    G M+KA++L+  M+   + PNV    +L+ G
Sbjct: 345 LQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEG 404

Query: 181 F 181
           F
Sbjct: 405 F 405



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  + +  +I  A+  +  ML   + P V I N L   +   + V  A +L+DEM   G
Sbjct: 156 LLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T  + +    K G   E  + F+  +    E+D  AYS L+  +C+   L +A 
Sbjct: 216 IYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLAC 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     V    TY+ +I      G   +A  L  +M    +  NVI   +L+ G+
Sbjct: 276 ELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGY 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + +  ++L  ++ E  V+PD  I S++++  +K
Sbjct: 336 CVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSK 372



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING   N ++E A  +  EM    I P V+++N L  G F    ++ AF+L DEM   
Sbjct: 749 VLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDK 808

Query: 61  GVAADTRTYTIFIDGLCK 78
           G+  D  TY I ++G  K
Sbjct: 809 GLVPDDTTYDILVNGKLK 826



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/159 (17%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY----SCLIDGLCKS 114
           R G  +D+R +   +    +   I ++VE FRT+     E D+  +    + L+  + + 
Sbjct: 143 RYGFESDSRVFNYLLKSFVRVNKITDAVECFRTM----LEHDLVPWVPIMNNLLTAMVRR 198

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
             +  A +L+  +    +  D  T  +++     +G+ ++    F + +   +  +   +
Sbjct: 199 NMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAY 258

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             L+    R  + +   ELL +M+E   +P     + V+
Sbjct: 259 SILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVI 297


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 115/210 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C +  I+ A  ++  M+SKG  PDVV +NTL  G  +  +VE   KLF +M + G
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRG 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   I G  + G + ++ E F  +       DI  Y+ L+ GLC +G LE AL
Sbjct: 361 LVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKAL 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  D+VTY+ +I G+   G+++ A  LF  +    + P+++T+ T++ G 
Sbjct: 421 VIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGL 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSI 211
                  +V  L  KMK++ +M + S++ +
Sbjct: 481 CTKGLQHEVEALYTKMKQEGLMKNDSMLCL 510



 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 113/202 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+   +  A++L  +M+  G +PD+V +N +   L +  +V  A   F E+ R G
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKG 220

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ++GLC +G   ++  L R +   K   ++  YS L+D   K+G++  A 
Sbjct: 221 IRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R  +  D+VTYS +I+GL    ++D+A+ +F  M      P+V+++ TLI+GF
Sbjct: 281 EIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGF 340

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +       ++L  KM ++ ++
Sbjct: 341 CKAKRVEDGMKLFRKMSQRGLV 362



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  AL+ + E+  KGI+P+VV +  L  GL    +   A +L  +M +  
Sbjct: 196 IIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRK 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  +D   KNG ++E+ E+F  +  +  + DI  YS LI+GLC   R++ A 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       DVV+Y+ +I+G     +++    LF  M +  +  N +T+ TLI GF
Sbjct: 316 QMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGF 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
            ++ +  K  E   +M    V PD    +I++  L  N +   +L  F   ++ E
Sbjct: 376 FQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C +     A  L  +M+ + I P+V+ ++ L     +  +V  A ++F+EM R  
Sbjct: 231 LVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMS 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I+GLC +  I E+ ++F  +    C  D+ +Y+ LI+G CK+ R+E  +
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGM 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  LV + VTY+ +I G +  G +DKA + F  M+   V+P++ T+  L+ G 
Sbjct: 351 KLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGL 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  K + +   M++  +  D    + V+  + K 
Sbjct: 411 CDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKT 448



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 110/208 (52%), Gaps = 6/208 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C   ++  AL++  +ML  G +PD V   +L  G    ++V  A  L D+M   
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   ID LCK   + ++++ F+ +       ++  Y+ L++GLC SGR   A
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+TYS ++     +G++ +A ++F +M   ++ P+++T+ +LI+G
Sbjct: 245 ARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLING 304

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPD 205
                RI+E +++ +L   M  K   PD
Sbjct: 305 LCLHDRIDEANQMFDL---MVSKGCFPD 329



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 109/216 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K K+ +  ++L  +M   GI+ D+   N +        QV  A  +  +M + G
Sbjct: 91  LLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLG 150

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T    ++G C+   + ++V L   +  +    DI AY+ +ID LCK+ R+  AL
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDAL 210

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + R  +  +VVTY+ +++GL N G+ + A  L  DM +  + PNVIT+  L+  F
Sbjct: 211 DFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAF 270

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  +  +  E+  +M   ++ PD    S +++ L 
Sbjct: 271 VKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLC 306



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 95/209 (45%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A+NL+ EM+     P +V  N L   + ++ + +    L  +M+  G+  D  T+ 
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C    +  ++ +   +  L  E D      L++G C+  R+  A+ L   +   
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D+V Y+ +I  L    +++ A D F ++    + PNV+T+  L++G       +  
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             LL  M ++ + P+    S ++D   KN
Sbjct: 245 ARLLRDMIKRKITPNVITYSALLDAFVKN 273



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C N  +E AL ++ +M    +  D+V + T+  G+ +  +VE A+ LF  +   
Sbjct: 405 ILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLK 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  D  TYT  + GLC  G   E   L+  ++
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMK 497



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           +++ LFR +   +    I  ++ L+  + K  + ++ + L   +    +  D+ T++I+I
Sbjct: 68  DAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVI 127

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +      Q+  A  +   M +    P+ +T G+L++GF R N  S  + L+ KM E    
Sbjct: 128 NCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYR 187

Query: 204 PDASIVSIVVDLLAKNE 220
           PD    + ++D L K  
Sbjct: 188 PDIVAYNAIIDSLCKTR 204


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 35/248 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I   CK  ++  A +L+ +M   G+ PD+V +NTL  G  +I  ++ +  LF+EM+  
Sbjct: 137 IMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFM 196

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+  CK   ++ + E FR ++    + ++ +YS LID LCK G +++A
Sbjct: 197 GCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMA 256

Query: 121 LELFHSLPR-------------------------GVLVAD----------VVTYSIMIHG 145
           ++ F  + R                           ++AD          +VTY+ ++ G
Sbjct: 257 IKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDG 316

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  +G M++A +LF  M +  V PN+  +  LIHG I++    K +EL ++M+EK++ PD
Sbjct: 317 LCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPD 376

Query: 206 ASIVSIVV 213
             +   +V
Sbjct: 377 ILLWGTIV 384



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK K +  A   + EM  K +KP+V+ ++TL   L +   ++ A K F +M R G
Sbjct: 208 LINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVG 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  ID  CK G + E+  L   +     +L+I  Y+ L+DGLC+ G +  A 
Sbjct: 268 LLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAE 327

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++ +  +  ++  Y+ +IHG      MDKA +LF +M E  + P+++ +GT++ G 
Sbjct: 328 ELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGL 387

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++  +   ++ +MKE  +  +  I + ++D   K
Sbjct: 388 CSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFK 424



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K + ++ A+ L++EM  K IKPD+++  T+  GL    ++E    +  EM+  G
Sbjct: 348 LIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESG 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+   YT  +D   K G   E++ L   +R L  E+ +  +  LIDGLCK G ++ A+
Sbjct: 408 IGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAI 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +P   L  +V  Y+ +I GL  +  +  A  LF +M++  + P+ I +  +I G 
Sbjct: 468 YYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGN 527

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++     + + + +KM E  +  D
Sbjct: 528 LKHGNFQEALNMRNKMMEMGIELD 551



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   ++ A+  + +M   G+ P+   +++L     +   +  AF L DEM ++ 
Sbjct: 243 LIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEH 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  +DGLC+ G + E+ ELFR +       ++QAY+ LI G  K   ++ A+
Sbjct: 303 VDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAM 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ +    +  D++ +  ++ GL ++ ++++   +  +M+E+ +  N + + TL+  +
Sbjct: 363 ELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAY 422

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    ++ I LL +M++            ++D L K
Sbjct: 423 FKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCK 459



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 101/209 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C   ++E    + +EM   GI  + VI+ TL    F+      A  L +EM+  G
Sbjct: 383 IVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   IDGLCK G + E++  F  +     + ++  Y+ LIDGLCK+  +  A 
Sbjct: 443 TEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAK 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    ++ D + Y+ MI G    G   +A ++   M E  +  ++  + +L+ G 
Sbjct: 503 KLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGL 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
            +  +  +  + L +M  K ++PD ++ +
Sbjct: 563 SQCGQVQQARKFLAEMIGKGIIPDETLCT 591



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 104/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  A  L  EML + +  ++V + TL  GL E   +  A +LF  M + G
Sbjct: 278 LIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAG 337

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + + YT  I G  K   + +++ELF  +R    + DI  +  ++ GLC   +LE   
Sbjct: 338 VTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECK 397

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    + A+ V Y+ ++   +  G   +A +L  +M +      V+TF  LI G 
Sbjct: 398 IIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGL 457

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + I    +M + ++ P+ ++ + ++D L KN
Sbjct: 458 CKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKN 495



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 92/203 (45%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A   +  M    + P     N     L +  + + +   F +M   G+A    TY I
Sbjct: 78  LEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNI 137

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I  +CK G ++ +  LF  ++ +    DI  Y+ LIDG  K G L+ ++ LF  +    
Sbjct: 138 MIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMG 197

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+       M +A + F +M++  + PNVI++ TLI    +       I
Sbjct: 198 CEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAI 257

Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
           +    M    ++P+    S ++D
Sbjct: 258 KFFVDMTRVGLLPNEFTYSSLID 280



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 92/202 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ Y K      A+NL  EM   G +  VV    L  GL +   V+ A   F  M    
Sbjct: 418 LMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHD 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDGLCKN  I ++ +LF  ++      D  AY+ +IDG  K G  + AL
Sbjct: 478 LQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEAL 537

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    +  D+  Y+ ++ GL   GQ+ +A     +M    + P+      L+   
Sbjct: 538 NMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKH 597

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
             +    + IEL +++ EK ++
Sbjct: 598 YELGNIDEAIELQNELVEKGLI 619



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 92  LRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           LR+ K  +  +A SC   +  L K+G  +++ + F  +    +   V TY+IMI  +  +
Sbjct: 86  LRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKE 145

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G M  A  LF  M++  + P+++T+ TLI G+ +I    + + L  +MK     PD    
Sbjct: 146 GDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITY 205

Query: 210 SIVVDLLAKNEISLNSLPSF 229
           + +++   K +  L +   F
Sbjct: 206 NALINSFCKFKGMLRAFEFF 225



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 2/142 (1%)

Query: 79  NGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           + +++   ++F  L   +  C      +  L   L + G LE A + F  + +  ++   
Sbjct: 38  SSWVLPGSDVFEILWTTRNVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKA 97

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            + +  +H L   G+ D + D F DM    +AP V T+  +I    +  +      L  +
Sbjct: 98  RSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQ 157

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           MK+  + PD    + ++D   K
Sbjct: 158 MKKMGLTPDIVTYNTLIDGYGK 179


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK+K +  A +LYS+ML K I PDV+ +NTL  G   + +++ A  LF++M    
Sbjct: 125 IIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKN 184

Query: 62  VAADTRTYTIFIDGLCKNG-----------YIVESVE----------------------- 87
           +  D  T+ I +DGLCK G            I +SV+                       
Sbjct: 185 IKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKAT 244

Query: 88  -LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F T+       D+ +YS +I+GLCK+  ++ A+ L   +    +  + VTYS +I GL
Sbjct: 245 FVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGL 304

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G++  A DL  +M       +VIT+ +L+    + ++  K I LL K+K++ + PD 
Sbjct: 305 HKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDI 364

Query: 207 SIVSIVVDLLAKN 219
              +I+VD L KN
Sbjct: 365 YTYTILVDGLCKN 377



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  E++ A N+ + M+ + + PDV+ +N+L  G F + Q  +A  +F+ M R 
Sbjct: 194 ILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARR 253

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +Y++ I+GLCK   + E+V L + +       +   YS LIDGL KSGR+  A
Sbjct: 254 GVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDA 313

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L + +      ADV+TY+ ++  L  + Q+DKA  L   +++  + P++ T+  L+ G
Sbjct: 314 WDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDG 373

Query: 181 FI---RINEPS------------------KVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                R+ +                    K + LL KM++    P+     I++  L +N
Sbjct: 374 LCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFEN 433

Query: 220 EIS 222
           +++
Sbjct: 434 DMN 436



 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 14/203 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK K ++ A+NL  EM SK + P+ V +++L  GL +  ++  A+ L +EM   
Sbjct: 264 VMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNR 323

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD  TY   +D LCKN  + +++ L   ++    + DI  Y+ L+DGLCK+GRL+ A
Sbjct: 324 GQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDA 383

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E++  L              +I G + D   DKA  L   ME+N   PN +TF  LI  
Sbjct: 384 QEVYQIL--------------LIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRA 429

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               +   K +ELL +M  + ++
Sbjct: 430 LFENDMNDKAVELLREMIARGLL 452



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 1   ILINGYCK------NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF 54
           IL+N +C       N +++  L+ + ++++KG + + V + TL  GL +  +   A ++ 
Sbjct: 48  ILVNCFCHLGQVCLNDKVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVL 107

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
             +    V  +   Y+  I  LCK+  ++++ +L+  + + +   D+  Y+ L+ G    
Sbjct: 108 RNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIV 167

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GRL+ A+ LF+ +    +  D+ T++I++ GL  +G+M KA ++   M + +V P+VIT+
Sbjct: 168 GRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITY 227

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +L+ G+  + + +K   + + M  + V PD    S++++ L K ++
Sbjct: 228 NSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKM 274



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E   A+ +   +    ++P+VV+++T+   L +   V  AF L+ +M    
Sbjct: 90  LIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKR 149

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   + G    G + E+V LF  + +   + DI  ++ L+DGLCK G ++ A 
Sbjct: 150 ISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKAR 209

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV+TY+ ++ G +   Q +KA  +F  M    V P+V ++  +I+G 
Sbjct: 210 NVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGL 269

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + + LL +M  K++ P+    S ++D L K+
Sbjct: 270 CKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKS 307


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK+ E++ A N+ + M+ + ++P++V +N+L  G F + +V +A +LF+ +   G
Sbjct: 129 LVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRG 188

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + R+Y + I+GLCKN  + E+  LF+ +       D  AY+ LIDGLCKS R+    
Sbjct: 189 MTPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVW 248

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +      A+++TY+ ++ GL  + Q+DKA  L   ++   + PN+ T+  L+ G 
Sbjct: 249 DFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGL 308

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        E+   +  K    DA I +++++ L K
Sbjct: 309 CKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCK 345



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 100/181 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CKNK ++ A NL+ EM SK + PD V +N+L  GL +  ++   +    EM   
Sbjct: 198 VMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDR 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+  TY   +DGLCKN  + +++ L   ++      +I  Y+ L+DGLCK+GRL  A
Sbjct: 258 GQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDA 317

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E++  L       D   Y++MI+GL  +G +D+A  L   ME+N   P+ +T+   I  
Sbjct: 318 QEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTYEITIRA 377

Query: 181 F 181
            
Sbjct: 378 L 378



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 126/267 (47%), Gaps = 49/267 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE--------------IHQV 47
           +I+  CK+K +    +LYSEM+ K I PDVV +NTL   L                + Q+
Sbjct: 45  IIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEYGFSILGQM 104

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG--------------------------- 80
           + A  L ++M    V  + RT+T  +DGLCK+G                           
Sbjct: 105 KEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSL 164

Query: 81  ----YIVESV----ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
               ++V+ V    +LF T+ +     ++++Y  +I+GLCK+  ++ A  LF  +    +
Sbjct: 165 MDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNM 224

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           V D V Y+ +I GL    ++    D   +M +     N+IT+ +L+ G  + ++  K I 
Sbjct: 225 VPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAIT 284

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LL K+K + + P+    +I+VD L KN
Sbjct: 285 LLTKIKNQGIRPNIYTYTILVDGLCKN 311



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 85/146 (58%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK++ I    +   EM  +G   +++ +N+L  GL + HQV++A  L  +++  G
Sbjct: 234 LIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYTI +DGLCKNG + ++ E+++ L     +LD + Y+ +I+GLCK G L+ AL
Sbjct: 294 IRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEAL 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY 147
            L   +       D VTY I I  L+
Sbjct: 354 SLLSKMEDNKCTPDGVTYEITIRALF 379



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 31/229 (13%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKG----------IKPDVVIHNTLFIGLFEIHQVERAFK 52
           + G C N E+  AL  +  +++KG          +KPDVV++NT+   L +   V     
Sbjct: 1   MKGLCLNGEVRKALYFHDHVIAKGFHLNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCD 60

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L+ EM    +  D  TY   I  L    YI    E                      G  
Sbjct: 61  LYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEY---------------------GFS 99

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
             G+++ A+ L + +    +  ++ T++ ++ GL  DG++ KA ++   M +  V PN++
Sbjct: 100 ILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIV 159

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           T+ +L+ G+  + E +K  +L + +  + + P+     ++++ L KN++
Sbjct: 160 TYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKM 208



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 68/118 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CKN +++ A+ L +++ ++GI+P++  +  L  GL +  ++  A +++ ++   G
Sbjct: 269 LLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKG 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
              D R YT+ I+GLCK G++ E++ L   +   KC  D   Y   I  L +S R EI
Sbjct: 329 YQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTYEITIRALFESDRNEI 386


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 110/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+NK ++ A  ++  M +KG   + V +  L  G  E  +V+ A KLF +M  D 
Sbjct: 245 LILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDN 304

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                RTYT+ I  LC+ G   E++ +F+ +    C+ ++  Y+ LI  LC+    + A 
Sbjct: 305 CWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAK 364

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +    L+  VVTY+ +I G    G    A ++   ME N  +PN  T+  LI GF
Sbjct: 365 KILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGF 424

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     K + LLHKM E+ + P+    +I++
Sbjct: 425 CRGKNIHKAMSLLHKMLERKLQPNVVTYNILI 456



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+ K I  A++L  +ML + ++P+VV +N L  G  +   +  A+KL   M   G
Sbjct: 420 LILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESG 479

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------------------R 93
           +  D  TY++FID LCK G + E+  LF +L                            R
Sbjct: 480 LVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGR 539

Query: 94  IL-------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L        C  +   Y+ LIDG CK    + A  L   + +  +     TY+I+I  L
Sbjct: 540 FLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNL 599

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             D + D+AHD+F  M      P+V  +   IH +           L+ KM  K +MPD 
Sbjct: 600 LKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDT 659

Query: 207 SIVSIVVDLLAK 218
            + ++ +D   +
Sbjct: 660 MLYTLFIDAYGR 671



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 100/218 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   C+      ALN++ EM  K  +P+V  +  L   L E    + A K+ + M   
Sbjct: 314 VIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEK 373

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   IDG CK G    ++E+   +    C  + + Y+ LI G C+   +  A
Sbjct: 374 GLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKA 433

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L H +    L  +VVTY+I+IHG   +G +  A+ L   M E+ + P+  T+   I  
Sbjct: 434 MSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDT 493

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +   L   +KEK +  +  I S ++D   K
Sbjct: 494 LCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK 531



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 101/219 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK      AL + S M S    P+   +N L +G      + +A  L  +M    
Sbjct: 385 LIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERK 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY I I G CK G +  + +L   +       D   YS  ID LCK G +E A 
Sbjct: 445 LQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEAR 504

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF SL    + A+ V YS +I G    G++     L   M      PN IT+ +LI G+
Sbjct: 505 SLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGY 564

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +   L+  M ++++ P A   +I++D L K++
Sbjct: 565 CKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDD 603



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 107/220 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C++   + A  + + ML KG+ P VV +N L  G  +      A ++   M+ +
Sbjct: 349 VLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESN 408

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + + RTY   I G C+   I +++ L   +   K + ++  Y+ LI G CK G L  A
Sbjct: 409 NCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSA 468

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    LV D  TYS+ I  L   G +++A  LF  ++E  +  N + + TLI G
Sbjct: 469 YKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDG 528

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + ++ + S    LL KM     +P++   + ++D   K +
Sbjct: 529 YCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEK 568



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 109/217 (50%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++Y EML   + P++   NT+  G  ++  V  A     ++ + G++ DT TYT  I G 
Sbjct: 190 SVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGY 249

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C+N  +  +  +F ++    C  +  +Y+ LI G C++ R++ AL+LF  +        V
Sbjct: 250 CRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTV 309

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            TY+++I  L   G+  +A ++F +M E    PNV T+  LI      +      ++L+ 
Sbjct: 310 RTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNG 369

Query: 197 MKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
           M EK ++P     + ++D   K  +S ++L   ++ E
Sbjct: 370 MLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLME 406



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 92/217 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+  CK   +E A +L+  +  KGIK + VI++TL  G  ++ +V     L D+M   
Sbjct: 489 VFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSA 548

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ TY   IDG CK     E+  L   +     E     Y+ LID L K    + A
Sbjct: 549 GCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQA 608

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +       DV  Y+  IH   + G++  A  L   M    + P+ + +   I  
Sbjct: 609 HDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDA 668

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           + R         +L +M E    P     S ++  L+
Sbjct: 669 YGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLS 705



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 10/210 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQR 59
           ILI+   K+ E + A +++ +MLS G  PDV I+ T FI  +  H +++ A  L  +M  
Sbjct: 594 ILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIY-TAFIHAYCSHGRLKDAEVLICKMNA 652

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  DT  YT+FID   + G I  +  + + +  + CE     YSCLI  L  +   E+
Sbjct: 653 KGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEV 712

Query: 120 ALELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +     S    GV   D           +     +   DLF  M E+  APN  T+G  I
Sbjct: 713 SSSSELSDLSSGVASND-------FSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFI 765

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G  ++        L   MKEK   P+  I
Sbjct: 766 TGLCKVGCLEVAHRLFDHMKEKGQSPNEDI 795



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N L + L     ++    ++ EM  D V  +  T    ++G CK G +VE+ EL+ + +
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEA-ELYVS-K 229

Query: 94  ILKC--ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           I++    LD   Y+ LI G C++  ++ A  +F S+P    + + V+Y+ +IHG     +
Sbjct: 230 IVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARR 289

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+A  LF  M E+   P V T+  +I    ++   ++ + +  +M EK+  P+    ++
Sbjct: 290 VDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTV 349

Query: 212 VV 213
           ++
Sbjct: 350 LI 351



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           + E  L+L+ +M   G  P+   +     GL ++  +E A +LFD M+  G + +   Y 
Sbjct: 738 DYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYN 797

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             +   C+ G   E++     +   +    + +   L+ GL   G  E A  +F S  + 
Sbjct: 798 SLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQC 857

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
               D + + ++I GL   G  DK  DLF  ME      +  T+  LI GF  I E
Sbjct: 858 EYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGFDGIQE 913



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 29/243 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL----------------------- 37
           + I+ Y +   I+GA  +   M   G +P    ++ L                       
Sbjct: 664 LFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSS 723

Query: 38  ------FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
                 F   +     E    LF +M   G A +  TY  FI GLCK G +  +  LF  
Sbjct: 724 GVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDH 783

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           ++      +   Y+ L+   C+ G    A+     +     +  + +  +++ GLY++G 
Sbjct: 784 MKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGN 843

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            +KA  +F    +     + + +  LI G ++     K  +L   M+ +         S+
Sbjct: 844 DEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSM 903

Query: 212 VVD 214
           +++
Sbjct: 904 LIE 906


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 123/226 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y +   +   L  +  ML  G  P V+  N L  GL +++  +R +++++EM+R 
Sbjct: 193 MLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERF 252

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +  T+ I    LCK+G   +  +    +     + DI  Y+ LI+  C+ GRL+ A
Sbjct: 253 GIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDA 312

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + R  +V D+V+Y+ +++GL  +G++ +AH LF  M    ++P+++T+ TLIHG
Sbjct: 313 FYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHG 372

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           + +  +  +   LLH M    + PD+    ++V+   K    L++L
Sbjct: 373 YCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSAL 418



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 99/208 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +  CK+ +         +M  +G  PD+V +NTL        +++ AF L+  M R 
Sbjct: 263 ILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRR 322

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +YT  ++GLCK G + E+ +LF  +       DI  Y+ LI G CK G+++ +
Sbjct: 323 GVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQES 382

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L H +    +  D  T  +++ G   +G+   A +L ++++   V+ +   +  LI  
Sbjct: 383 RSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVA 442

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
             R N P     LL +M +    P+  I
Sbjct: 443 LCRENRPFAAKNLLERMSKDGHKPELEI 470



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 2/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   +  A  L+  M+ +G+ PD+V +NTL  G  +  +++ +  L  +M  +G
Sbjct: 334 LMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNG 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D+ T  + ++G  K G  + ++ L   L+     +    YS LI  LC+  R   A 
Sbjct: 394 ISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAK 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     ++  Y+ +I        + +A  L ++M +  + PN+ T+  +I   
Sbjct: 454 NLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCL 513

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEI-SLNSLPSFTVHERQEEVD 239
            R++   +   L+ +M    ++PD  I  ++      +N+I    SL SF   E Q    
Sbjct: 514 SRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDT 573

Query: 240 ES 241
           ES
Sbjct: 574 ES 575



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 20/176 (11%)

Query: 50  AFKLFDEMQRD-GVAADTRTYTIFIDGLCKN-------GYIVESVEL----------FRT 91
           A   F+ ++ D G+   T+ Y I +  L  +        ++ E VEL          F+ 
Sbjct: 117 ALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKN 176

Query: 92  LRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           L +    C  D   +  L+    + GR+   L  F  + R   V  V+T + +++GL   
Sbjct: 177 LILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKL 236

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              D+  +++ +ME   +APN+ TF  L H   +  +  KV + L KM+E+   PD
Sbjct: 237 NYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD 292



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 84/205 (40%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ GY K  +   ALNL  E+   G+     I++ L + L   ++   A  L + M +D
Sbjct: 403 VLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKD 462

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   I   C+   I E++ L   +   + + ++  Y  +I  L +  R    
Sbjct: 463 GHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEG 522

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    ++ D+     + +G   +  +DKA  L     +     +  +F  LI  
Sbjct: 523 ESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRI 582

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                + ++ +E+   M +  ++P+
Sbjct: 583 TSAKGDIARSLEIQDMMLKMGLLPN 607


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 6/244 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  ++   L L  EM +KG  P +V + +L   L +   +E+   LF EM++ 
Sbjct: 454 VLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKR 513

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ + + Y   ID LCK     +++ + + +    C+ DI  ++ LI GLC  G +  A
Sbjct: 514 GLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 573

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                   R  L  + ++Y+ +IHG    G++  A DL ++M      P+V+TFG LIHG
Sbjct: 574 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHG 633

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
            +   + S+ + +  KM E+ V PD +I ++++  L K  +    LP+       EE+ E
Sbjct: 634 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHM----LPA--AKNILEEMLE 687

Query: 241 SNVK 244
            NV+
Sbjct: 688 KNVQ 691



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK      A+ +  +M + G  PD++  NTL  GL     V +A     E  R  
Sbjct: 525 VIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRE 584

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +YT  I G C  G ++ + +L   +       D+  +  LI GL  +G++  AL
Sbjct: 585 LNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEAL 644

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  DV  Y+++I GL     +  A ++  +M E  V P+   + TLI GF
Sbjct: 645 IVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGF 704

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           IR        ++   M+ K V PD
Sbjct: 705 IRSENLGDARKIFEFMEHKGVRPD 728



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 85/180 (47%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P+V   N L   L E  + + A KL+DEM  +   AD  +  + + GLC  G + E 
Sbjct: 374 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEG 433

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           ++L        C   +  Y+ LIDG C+ G +   L L   +     +  +VTY  +I+ 
Sbjct: 434 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINC 493

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G ++K   LFL+M +  ++PNV  + ++I    +    ++ + +L +M      PD
Sbjct: 494 LGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPD 553



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   E+  A +L  EM+ +G  PDVV    L  GL    +V  A  + ++M    
Sbjct: 595 LIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQ 654

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y + I GLCK   +  +  +   +     + D   Y+ LIDG  +S  L  A 
Sbjct: 655 VFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDAR 714

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           ++F  +    +  D+V+ + MI G    G M +A
Sbjct: 715 KIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEA 748



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   +  A N+  EML K ++PD  ++ TL  G      +  A K+F+ M+  
Sbjct: 664 VLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHK 723

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           GV  D  +    I G C+ G + E++     +R
Sbjct: 724 GVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMR 756



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G     ++  AL +  +M  + + PDV I+N L  GL + H +  A  + +EM    
Sbjct: 630 LIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKN 689

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y   IDG  ++  + ++ ++F  +       DI + + +I G C+ G +  A+
Sbjct: 690 VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAI 749


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 113/214 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK   +  A   + EML +G++ D   + T  +G  ++    RAF L +EM   
Sbjct: 449 ILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y + +DGLCK G + E+ EL + +       D   Y+ +I    ++GRL   
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F+ +    L   VVTY+++IHG    G++++A   F +M+E  + PNVIT+ +LI+G
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             ++    +      +M EK + P+    +I+++
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILIN 662



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 118/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+   +  A  L+ E+ S  + P +V +NTL  GL    ++E A +L  EM  +G
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--------------- 106
           +A D  TYTI ++G CK G +  + E F  +     ELD  AY+                
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF 499

Query: 107 --------------------LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                               ++DGLCK G LE A EL   +    ++ D VTY+ +IH  
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++ K  ++F +M    + P+V+T+  LIHG        +      +M+EK ++P+ 
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 207 SIVSIVVDLLAK 218
              + +++ L K
Sbjct: 620 ITYNSLINGLCK 631



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY     +  AL+L  EM+ KG  P V  +N+   GL ++ ++  A +   +M  + 
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G C+ G ++++  LF  LR +     I  Y+ L+DGLC+ G LE+A 
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D+VTY+I+++G    G +  A + F +M    +  +   + T I G 
Sbjct: 430 QLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGE 489

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +++ + S+   L  +M  K   PD  I ++VVD L K
Sbjct: 490 LKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCK 526



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 112/217 (51%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G  K  +   A +L  EML+KG  PD++I+N +  GL ++  +E A +L  +M  DGV
Sbjct: 486 IVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGV 545

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  TYT  I    +NG + +  E+F  +        +  Y+ LI G    GRLE A  
Sbjct: 546 IPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFI 605

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
            F  +    ++ +V+TY+ +I+GL    +MD+A++ F +M E  + PN  ++  LI+   
Sbjct: 606 YFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENC 665

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    + + L  +M ++ V PD+   S ++  L K+
Sbjct: 666 NMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKD 702



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ YCK  +++  L+L SEM  +G  P+ V +N L  GL +  + E+A  L  EM + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I G    G + E++ L   + +      +  Y+  I GLCK GR+  A+
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAM 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +    L+ DVV+Y+ +I+G    G + KA  LF ++    + P ++T+ TL+ G 
Sbjct: 360 QQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R  E     +L  +M  + + PD    +I+V+
Sbjct: 420 CRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ +Y  M   GIKP +V +NTL     +  +V++   L  EMQR G A +  TY + I+
Sbjct: 218 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLIN 277

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPRGVL 132
           GL K G   ++  L     +LK  L + AY+   LI G    G L  AL L   +     
Sbjct: 278 GLSKKGEFEQAKGLIG--EMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA 335

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
              V TY+  I+GL   G+M  A     DM  N + P+V+++ TLI+G+ R+    K   
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFL 395

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L  +++   + P     + ++D L + 
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQ 422



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y K   +E  L+++ +M+   + PDV   N +   L +   + +A +++  M   
Sbjct: 169 LLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEF 228

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   +D  CK G + + ++L   ++   C  +   Y+ LI+GL K G  E A
Sbjct: 229 GIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQA 288

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  L     TY+ +I+G +N G + +A  L  +M     +P V T+ + I+G
Sbjct: 289 KGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYG 348

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             ++   S  ++ L  M   N++PD
Sbjct: 349 LCKLGRMSDAMQQLSDMLANNLLPD 373



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 86/178 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK   +E A  L  +M+S G+ PD V + ++     E  ++ +  ++F EM   
Sbjct: 519 VVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSK 578

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT+ I G    G +  +   F  ++      ++  Y+ LI+GLCK  R++ A
Sbjct: 579 GLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQA 638

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
              F  +    +  +  +Y+I+I+   N G   +A  L+  M +  V P+  T   L+
Sbjct: 639 YNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALL 696



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 85/172 (49%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           VE+   +FD+M +  ++ D +     +  L     + ++VE++RT+     +  I  Y+ 
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+D  CK G+++  L+L   + R     + VTY+++I+GL   G+ ++A  L  +M +  
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +  T+  LI+G+      ++ + L  +M  K   P  +  +  +  L K
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCK 351



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 68/123 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+     +E A   +SEM  KGI P+V+ +N+L  GL ++ ++++A+  F EM   
Sbjct: 589 VLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEK 648

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +YTI I+  C  G   E++ L++ +     + D   +S L+  L K  +L+  
Sbjct: 649 GIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAV 708

Query: 121 LEL 123
            +L
Sbjct: 709 RQL 711



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 61/121 (50%)

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
           E+ ++    LI    K   +E  L +F  + +  L  DV   + ++  L +   M KA +
Sbjct: 161 EVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVE 220

Query: 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  M E  + P ++T+ TL+  + +  +  + ++LL +M+ +   P+    +++++ L+
Sbjct: 221 VYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLS 280

Query: 218 K 218
           K
Sbjct: 281 K 281


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 114/209 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C +  I+ A  ++  M+SKG   DVV +NTL  G  +  +VE   KLF EM + G
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ++T TY   I G  + G + ++ E F  +       DI  Y+ L+ GLC +G LE AL
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  D+VTY+ +I G+   G++++A  LF  +    + P+++T+ T++ G 
Sbjct: 421 VIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
                  +V  L  KMK++ +M +   +S
Sbjct: 481 CTKGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+   +  A++L  +M+  G KPD+V +N +   L +  +V  AF  F E++R G
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 62  VAADTRTYTIFIDGLC-----------------------------------KNGYIVESV 86
           +  +  TYT  ++GLC                                   KNG ++E+ 
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ELF  +  +  + DI  YS LI+GLC   R++ A ++F  +     +ADVV+Y+ +I+G 
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               +++    LF +M +  +  N +T+ TLI GF +  +  K  E   +M    + PD 
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 207 SIVSIVVDLLAKN 219
              +I++  L  N
Sbjct: 401 WTYNILLGGLCDN 413



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C +     A  L S+M+ K I P+V+ ++ L     +  +V  A +LF+EM R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I+GLC +  I E+ ++F  +    C  D+ +Y+ LI+G CK+ R+E  +
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  LV++ VTY+ +I G +  G +DKA + F  M+   ++P++ T+  L+ G 
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               E  K + +   M+++ +  D    + V+  + K 
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 448



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 111/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + KN ++  A  L+ EM+   I PD+V +++L  GL    +++ A ++FD M   G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  +Y   I+G CK   + + ++LFR +       +   Y+ LI G  ++G ++ A 
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F  +    +  D+ TY+I++ GL ++G+++KA  +F DM++  +  +++T+ T+I G 
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGM 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  +   L   +  K + PD
Sbjct: 446 CKTGKVEEAWSLFCSLSLKGLKPD 469



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C   ++  AL++  +ML  G +PD V   +L  G    ++V  A  L D+M   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   ID LCK   + ++ + F+ +       ++  Y+ L++GLC S R   A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+TYS ++     +G++ +A +LF +M   ++ P+++T+ +LI+G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 181 FI---RINEPSKVIELL 194
                RI+E +++ +L+
Sbjct: 305 LCLHDRIDEANQMFDLM 321



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K K+ +  ++L  +M   GI+ D+   N +        QV  A  +  +M + G
Sbjct: 91  LLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLG 150

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T    ++G C+   + ++V L   +  +  + DI AY+ +ID LCK+ R+  A 
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + R  +  +VVTY+ +++GL N  +   A  L  DM +  + PNVIT+  L+  F
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  +  +  EL  +M   ++ PD    S +++ L 
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 306



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 98/209 (46%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A++L+S+M+     P +V  N L   + ++ + +    L  +M+  G+  D  T+ 
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C    +  ++ +   +  L  E D      L++G C+  R+  A+ L   +   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D+V Y+ +I  L    +++ A D F ++E   + PNV+T+  L++G    +  S  
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             LL  M +K + P+    S ++D   KN
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKN 273



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C N E+E AL ++ +M  + +  D+V + T+  G+ +  +VE A+ LF  +   
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  D  TYT  + GLC  G + E   L+  ++
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ T++I+I+      Q+  A  +   M +    P+ +T G+L++GF R N  S  + L+
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            KM E    PD    + ++D L K +   ++   F   ER+
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G  ++  +   F+L + MQ  
Sbjct: 141 ILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +  +++ LIDG CK GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL  +G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK+  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L +EM   G
Sbjct: 247 LIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCKNG + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +L+ +M+    +P
Sbjct: 391 FCKKGDVWTGSKLMKEMQRDGYVP 414



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  ++     L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ ++T  IDG CK+G +  ++E+++ +       D+  Y+ LI GLCK+G L+ A 
Sbjct: 237 LVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +   CK G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L     L +++    +  DV TYS++I+GL  + ++D A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +M +N + PN ++F TLI G  +       +E+  +M  +++ PD    + ++  L KN
Sbjct: 231 EMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKN 289


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LIN   K  ++  A +L  EM+S G+ P+VV  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 228 LINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSM 287

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +I+G
Sbjct: 288 MDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMING 347

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       ++VT++ +I G    G +D   +LF +M    +  N
Sbjct: 348 LCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI GF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 408 AITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 459



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G  P +V  NTL  GL    +V  A  LF +M + 
Sbjct: 20  ILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKP 79

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     T+T  ++GLC+ G +VE+V L   +     + +   Y  ++DG+CK G    A
Sbjct: 80  NVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSA 135

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     +  DVV YS +I GL+ DG+   A +LF++M++  + P+++T+  +I+
Sbjct: 136 LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMIN 195

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           GF    + S+   LL +M  + + PD    S +++ L K E  LNS
Sbjct: 196 GFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK-EGDLNS 240



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  AL+L+ +M     KP+VV   TL  GL    +V  A  L D M  DG
Sbjct: 56  LLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG 111

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIA 120
           +  +  TY   +DG+CK G  V ++ L R +  L   + D+  YS +IDGL K GR   A
Sbjct: 112 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDA 171

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+VTYS MI+G  + G+  +A  L  +M    ++P+V+TF  LI+ 
Sbjct: 172 QNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINA 231

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            ++  + +   +LL +M    V P+    + ++D L  +    ++L  F   ++ 
Sbjct: 232 LVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C + +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  I+GLCK   + E+ ++F ++       +I  ++ LI G
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+G ++  LELF  + R  +VA+ +TY  +I G    G ++ + D+F +M  + V P+
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  + + +L +++
Sbjct: 443 TITIRNMLTGLWSKEELKRALAMLEELQ 470



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   +  A+ L   M+  G++P+ + + T+  G+ ++     A  L  +M+   
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y+  IDGL K+G   ++  LF  ++      DI  YSC+I+G C SG+   A
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  DVVT+S +I+ L  +G ++ A DL  +M  + V PNV+T  TL+ G
Sbjct: 207 QRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDG 266

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
                +    +E+   M++  +  DA+
Sbjct: 267 LCDSGKLKDALEMFKAMQKSMMDIDAT 293



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++ I I   C    +  ++  F  L  L     +  ++ L+ GLC   R+  AL
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH + +     +VVT++ +++GL  +G++ +A  L   M E+ + PN IT+GT++ G 
Sbjct: 71  DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            ++ +    + LL KM+E  ++ PD  I S ++D L K+
Sbjct: 127 CKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKD 165



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           L+   DI +++ LI   C   +L  AL  F  L +      +VT++ ++HGL  + ++ +
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSE 68

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A DLF  M      PNV+TF TL++G  R     + + LL +M E  + P+      +VD
Sbjct: 69  ALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 215 LLAKNEISLNSL 226
            + K   ++++L
Sbjct: 125 GMCKMGDTVSAL 136


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++E    L  EM+ +GI+PD   +N L  G+  I +++ A  L++E +   
Sbjct: 532 LISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRD 591

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY + IDG CK   I E  +LF  L     EL+   Y+ LI   C++G    A 
Sbjct: 592 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAF 651

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +     TYS +IHG+ N G+M+ A  L  +M +  + PNV+ +  LI G+
Sbjct: 652 KLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGY 711

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ +  KV+ +L +M   ++ P+    ++++D  +K+
Sbjct: 712 CKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKS 749



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C+  +++ A+NL++E  S+ + P+V  +  +  G  +  ++E   KLF E+   
Sbjct: 566 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 625

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  ++  Y   I   C+NG  VE+ +L   +R          YS LI G+C  GR+E A
Sbjct: 626 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 685

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  L+ +VV Y+ +I G    GQMDK  ++  +M    + PN IT+  +I G
Sbjct: 686 KCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDG 745

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +     +LLH+M  K ++PD    +++ +   K
Sbjct: 746 YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 783



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC+N     A  L+ +M SKGI P    +++L  G+  I ++E A  L DEM+++G
Sbjct: 637 LIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG 696

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  I G CK G + + V + + +       +   Y+ +IDG  KSG ++ A 
Sbjct: 697 LLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAA 756

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H +    +V D VTY+++ +G   +G++++   +   M +  +  + IT+ TL+HG+
Sbjct: 757 KLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGW 816

Query: 182 IRINEPSKV 190
               +PS +
Sbjct: 817 ---QQPSAL 822



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +  AL +  +M+SKGI P+ V  N++  G  +I Q+E+A  + +EM   G
Sbjct: 357 LIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG 416

Query: 62  VAADTRTYTIFI-----------------------------------DGLCKNGYIVESV 86
            + +   +T  I                                    GLCK G   ++V
Sbjct: 417 FSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAV 476

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           EL+  L       ++   + LI GLCK+G ++ A+ L   +     V D +TY+ +I G 
Sbjct: 477 ELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGC 536

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++++   L  +M +  + P+  T+  LIHG  RI +  + + L ++ K ++++P+ 
Sbjct: 537 CKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNV 596

Query: 207 SIVSIVVDLLAK 218
               +++D   K
Sbjct: 597 YTYGVMIDGYCK 608



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 122/232 (52%), Gaps = 3/232 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C N   E AL    EML + ++P+  +  TL  GL +  +   A +L+  +   G
Sbjct: 427 IIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKG 486

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  T    I GLCK G + E+V L + +      LD   Y+ LI G CK G++E   
Sbjct: 487 FGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGF 546

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  D  TY+++IHG+   G++D+A +L+ + +   + PNV T+G +I G+
Sbjct: 547 KLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY 606

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
            + ++  +  +L  ++  +N+  ++ + + ++    +N    N++ +F +H+
Sbjct: 607 CKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNG---NTVEAFKLHD 655



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +   A+ L+  +L KG   ++V  N L  GL +   ++ A +L  +M   G
Sbjct: 462 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG 521

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I G CK G + E  +L   +     E D   Y+ LI G+C+ G+L+ A+
Sbjct: 522 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 581

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++      LV +V TY +MI G     ++++   LF ++    +  N + + TLI  +
Sbjct: 582 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 641

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     +  +L   M+ K + P  +  S ++
Sbjct: 642 CRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 673



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 1   ILINGYC---KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LI+ YC   +N     A+ ++  + +KG+ P V     L   L + +++E+++ +F+ M
Sbjct: 179 LLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM 238

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            R GV+ D   ++  I+  CK G + ++++LF  +  L    ++  Y+ LI GLCK G L
Sbjct: 239 -RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNL 297

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A      + +  + A ++TYS++I+GL    + ++A+ +  +  E    PN + + TL
Sbjct: 298 DEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTL 357

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I G+ ++      + +   M  K + P++  ++ ++    K
Sbjct: 358 IDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCK 398



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 108/216 (50%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           IN +CK  ++E A+ L+ +M   G+ P+VV +N L  GL +   ++ AF+  ++M +DGV
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 312

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
            A   TY++ I+GL K     E+  + +         +   Y+ LIDG CK G L  AL 
Sbjct: 313 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 372

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +   +    +  + VT + +I G    GQM++A  +  +M     + N   F T+IH   
Sbjct: 373 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 432

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  L +M  +N+ P+  +++ +V  L K
Sbjct: 433 MNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 468



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K ++   A ++  E L KG  P+ V++NTL  G  ++  +  A ++  +M   
Sbjct: 321 VLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSK 380

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++ T    I G CK G + ++  +   +      ++  A++ +I  LC + R E A
Sbjct: 381 GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESA 440

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     +    +  +    + ++ GL  +G+   A +L+  + E     N++T   LIHG
Sbjct: 441 LRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHG 500

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     + + LL KM E+  + D
Sbjct: 501 LCKTGNMQEAVRLLKKMLERGFVLD 525



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L++   K  E+E +  ++ E + +G+ PDV + +T      +  +VE A +LF +M++ 
Sbjct: 217 FLLSSLVKANELEKSYWVF-ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKL 275

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY   I GLCK+G + E+      +        +  YS LI+GL K  +   A
Sbjct: 276 GVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEA 335

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             +   +L +G    +VV Y+ +I G    G +  A  +  DM    + PN +T  ++I 
Sbjct: 336 NSVLKETLEKGFTPNEVV-YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQ 394

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF +I +  +   +L +M  +    +    + ++  L  N 
Sbjct: 395 GFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNS 435



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GY K+ +++ A  L  EM+ KGI PD V +N L  G  +  ++E  FK+ D M ++
Sbjct: 741 VMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQE 800

Query: 61  GVAADTRTYTIFIDGL 76
           G+  D  TYT  + G 
Sbjct: 801 GLPLDEITYTTLVHGW 816



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++ +FR L        ++  + L+  L K+  LE +  +F ++ +GV   DV  +S  I+
Sbjct: 196 AIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGV-SPDVYLFSTAIN 254

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                G+++ A  LF DME+  V+PNV+T+  LIHG  +     +      KM +  V  
Sbjct: 255 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 314

Query: 205 DASIVSIVVDLLAKNE 220
                S++++ L K E
Sbjct: 315 TLITYSVLINGLMKLE 330


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 12/232 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LIN   K  ++  A +L  EM+S G+ P+VV  NTL  GL +  +++ A ++F  MQ+  
Sbjct: 228 LINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSM 287

Query: 60  ---------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                    +GV  D +TY I I GL   G  +E+ EL+  +       D   YS +I+G
Sbjct: 288 MDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMING 347

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK  RL+ A ++F S+       ++VT++ +I G    G +D   +LF +M    +  N
Sbjct: 348 LCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            IT+ TLI GF ++   +  +++  +M    V PD  +I +++  L +K E+
Sbjct: 408 AITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 459



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C   ++  AL+ + ++   G  P +V  NTL  GL    +V  A  LF +M + 
Sbjct: 20  ILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKP 79

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     T+T  ++GLC+ G +VE+V L   +     + +   Y  ++DG+CK G    A
Sbjct: 80  NVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSA 135

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +     +  DVV YS +I GL+ DG+   A +LF++M++  + P+++T+  +I+
Sbjct: 136 LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMIN 195

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           GF    + S+   LL +M  + + PD    S +++ L K E  LNS
Sbjct: 196 GFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK-EGDLNS 240



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  AL+L+ +M     KP+VV   TL  GL    +V  A  L D M  DG
Sbjct: 56  LLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG 111

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIA 120
           +  +  TY   +DG+CK G  V ++ L R +  L   + D+  YS +IDGL K GR   A
Sbjct: 112 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDA 171

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+VTYS MI+G  + G+  +A  L  +M    ++P+V+TF  LI+ 
Sbjct: 172 QNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINA 231

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            ++  + +   +LL +M    V P+    + ++D L  +    ++L  F   ++ 
Sbjct: 232 LVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-----------GIKPDVVIHNTLFIGLFEIHQVERA 50
           L++G C + +++ AL ++  M              G++PDV  +N L  GL    +   A
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
            +L++EM   G+  DT TY+  I+GLCK   + E+ ++F ++       +I  ++ LI G
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK+G ++  LELF  + R  +VA+ +TY  +I G    G ++ + D+F +M  + V P+
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMK 198
            IT   ++ G     E  K + +L +++
Sbjct: 443 TITIRNMLTGLWSKEELKKALAMLEELQ 470



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-D 60
           L+NG C+   +  A+ L   M+  G++P+ + + T+  G+ ++     A  L  +M+   
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y+  IDGL K+G   ++  LF  ++      DI  YSC+I+G C SG+   A
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  DVVT+S +I+ L  +G ++ A DL  +M  + V PNV+T  TL+ G
Sbjct: 207 QRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDG 266

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
                +    +E+   M++  +  DA+
Sbjct: 267 LCDSGKLKDALEMFKAMQKSMMDIDAT 293



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++ I I   C    +  ++  F  L  L     +  ++ L+ GLC   R+  AL
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH + +     +VVT++ +++GL  +G++ +A  L   M E+ + PN IT+GT++ G 
Sbjct: 71  DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126

Query: 182 IRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKN 219
            ++ +    + LL KM+E  ++ PD  I S ++D L K+
Sbjct: 127 CKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKD 165



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           L+   DI +++ LI   C   +L  AL  F  L +      +VT++ ++HGL  + ++ +
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSE 68

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A DLF  M      PNV+TF TL++G  R     + + LL +M E  + P+      +VD
Sbjct: 69  ALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 215 LLAKNEISLNSL 226
            + K   ++++L
Sbjct: 125 GMCKMGDTVSAL 136


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 114/206 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYC+   I  A+NL +EML +G   DVV +NT+  GL +   +  A KLF+EM   
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D+ T TI IDG CK G +  ++ELF+ ++  +  LD+  Y+ L+DG  K G ++ A
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E++  +    ++   ++YSI+++ L + G + +A  ++ +M    + P V+   ++I G
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
           + R    S     L KM  +  +PD 
Sbjct: 595 YCRSGNASDGESFLEKMISEGFVPDC 620



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 116/213 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y     +E A  L + M  KG  P V  +NT+  GL +  + ERA ++F EM R G
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D+ TY   +   CK G +VE+ ++F  +R      D+  +S ++    +SG L+ AL
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+S+    L+ D V Y+I+I G    G +  A +L  +M +   A +V+T+ T++HG 
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     +  +L ++M E+ + PD+  ++I++D
Sbjct: 456 CKRKMLGEADKLFNEMTERALFPDSYTLTILID 488



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 120/235 (51%), Gaps = 5/235 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK   ++ A+ L+ +M  K I+ DVV +NTL  G  ++  ++ A +++ +M   
Sbjct: 485 ILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK 544

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     +Y+I ++ LC  G++ E+  ++  +     +  +   + +I G C+SG     
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG 604

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE--NAVAPNVITFGTLI 178
                 +     V D ++Y+ +I+G   +  M KA  L   MEE    + P+V T+ +++
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSIL 664

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
           HGF R N+  +   +L KM E+ V PD S  + +++     +   N   +F +H+
Sbjct: 665 HGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQD---NLTEAFRIHD 716



 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  ++     ++S+M S+ + PD+V  +++         +++A   F+ ++  G+  D 
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             YTI I G C+ G I  ++ L   +    C +D+  Y+ ++ GLCK   L  A +LF+ 
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  D  T +I+I G    G +  A +LF  M+E  +  +V+T+ TL+ GF ++ +
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
                E+   M  K ++P     SI+V+ L 
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALC 561



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 100/208 (48%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + ++  ++ AL  ++ +   G+ PD VI+  L  G      +  A  L +EM + G A D
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TY   + GLCK   + E+ +LF  +       D    + LIDG CK G L+ A+ELF 
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    +  DVVTY+ ++ G    G +D A +++ DM    + P  I++  L++      
Sbjct: 505 KMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVV 213
             ++   +  +M  KN+ P   I + ++
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMI 592



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 109/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y + +++  A   ++ + SKG    +   N L   L  I  VE A+ ++ E+ R 
Sbjct: 170 LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T  I ++ LCK+G + +       ++      DI  Y+ LI      G +E A
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL +++P       V TY+ +I+GL   G+ ++A ++F +M  + ++P+  T+ +L+  
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  +  ++   M+ ++V+PD    S ++ L  ++
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRS 388



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/66 (22%), Positives = 36/66 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C+  +++ A  +  +M+ +G+ PD   +  +  G      +  AF++ DEM + G
Sbjct: 663 ILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722

Query: 62  VAADTR 67
            + D +
Sbjct: 723 FSPDDK 728


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 18/236 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK+K ++ A +LY+EM++K + PDV  +N +  G   + +++ A  LF++M+ + 
Sbjct: 160 IINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLEN 219

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  T+   +   CK G + E   +   +     + DI  Y+ L+DG C    ++ A 
Sbjct: 220 VEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAK 279

Query: 122 ELFHSL-PRGV-----------------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
            +F+++  RGV                 ++ D + YS +I G    G++ +A +L  +M 
Sbjct: 280 NIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMH 339

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +    PN+IT+ ++++   +I+   K I LL K+K K + PDA   +I+ + L K+
Sbjct: 340 DRGQPPNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKD 395



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 94/179 (52%), Gaps = 18/179 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +CK   +     + + M+ +G+KPD++ +N+L  G   + +V++A  +F+ M + G
Sbjct: 230 LVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRG 289

Query: 62  VAADTRTYTIF------------------IDGLCKNGYIVESVELFRTLRILKCELDIQA 103
           V A+ RT  +F                  IDG CK+G I +++EL   +       +I  
Sbjct: 290 VTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIIT 349

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           Y+ ++  LCK   +E  + L   +    +  D  TY+I+ +GL+ DG++++A ++F D+
Sbjct: 350 YNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIFPDL 408



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 15  ALNLYSEMLSKGIKPDVVIHN---------------------TLFIGLFEIHQVERAFKL 53
           AL+ + ++  KGIKPD+  +N                     TL  GL ++ +   A +L
Sbjct: 82  ALSFHQKLHFKGIKPDLFTYNVLINCFSQLGHTHFLDRVSYETLINGLCKVGETRAALRL 141

Query: 54  FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
             E+    V  D   YT  I+GLCK+  + ++ +L+  +   +   D+  Y+ +I G C 
Sbjct: 142 LKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCV 201

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            GRL+ A+ LF+ +    + AD  T++ ++     +G + +   +   M +  V P++IT
Sbjct: 202 VGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIIT 261

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +L+ G+  + E  K   + + M ++ V  +   +++  ++  K
Sbjct: 262 YNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCK 306



 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           I  +  ++  L  S R  IAL     L    +  D+ TY+++I+     G     H  FL
Sbjct: 63  ISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQLG-----HTHFL 117

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           D          +++ TLI+G  ++ E    + LL ++ EK V  D  + + +++ L K++
Sbjct: 118 DR---------VSYETLINGLCKVGETRAALRLLKEVNEKIVQYDVVMYTAIINGLCKDK 168

Query: 221 I 221
           +
Sbjct: 169 L 169


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK K +  A +L+SEM+SKGI PDVV ++ L  G   + ++  A  LF++M  + 
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I ++  CK+G + E   +F  +     + +   Y+ L+DG C    +  A 
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F+++ +G +  D+ +YSIMI+G     + D+A +LF +M    + P+V+T+ +LI G 
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGL 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  ++L+ +M ++ V P     + ++D L K
Sbjct: 411 SKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCK 447



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K+ + A+NL+ EM  K I PDVV +++L  GL +  ++  A +L D+M   
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV    RTY   +D LCK   + +++ L   L+    + ++  YS LI GLC+SG+LE A
Sbjct: 430 GVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDA 489

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       +V TY+IMI G   +G  ++A  L   ME+N   P+  T+  +I  
Sbjct: 490 RKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILS 549

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
             + +E     +LL +M  + V P      I +    K E  ++S P
Sbjct: 550 LFKKDENDMAEKLLREMIARGVRPR----QIAIWFQKKKEYDVSSEP 592



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 122/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E   AL+L   +    ++P+VV++NT+   + ++  V  AF LF EM   G
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I G C  G + ++++LF  + +   + D+  ++ L++  CK G+++   
Sbjct: 256 ISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  + VTY+ ++ G     +++KA  +F  M +  V P++ ++  +I+GF
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I +  + + L  +M  KN++PD    S ++D L+K+
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKS 413



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 36/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +CK+ +++    ++  M+ +GIKP+ V +N+L  G   + +V +A  +F+ M + 
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D ++Y+I I+G CK     E++ LF+ +       D+  YS LIDGL KSGR+  A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 121 LELFHSL-PRGV----------------------------------LVADVVTYSIMIHG 145
           L+L   +  RGV                                  +  ++ TYSI+I G
Sbjct: 420 LQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKG 479

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+++ A  +F  +       NV T+  +I GF      ++ + LL KM++   +PD
Sbjct: 480 LCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPD 539

Query: 206 ASIVSIVV-DLLAKNE 220
           A    I++  L  K+E
Sbjct: 540 AKTYEIIILSLFKKDE 555



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 110/212 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K     L L  +M  +GIKP++V  N L     ++  +  AF +F ++ + G   DT 
Sbjct: 97  KSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTI 156

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+T  I GLC  G I ++      +  L    D  +Y  LI GLCK G    AL+L   +
Sbjct: 157 TFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  +VV Y+ +I  +     +++A DLF +M    ++P+V+T+  LI GF  + + 
Sbjct: 217 DGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKL 276

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  I+L +KM  +N+ PD    +I+V+   K+
Sbjct: 277 NDAIDLFNKMILENIKPDVYTFNILVNAFCKD 308



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I+ A   + ++++ G   D + + TL  GL ++ +   A  L   +  + 
Sbjct: 161 LIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL 220

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   ID +CK   + E+ +LF  +       D+  YS LI G C  G+L  A+
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAI 280

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+ +    +  DV T++I+++    DG+M +   +F  M +  + PN +T+ +L+ G+
Sbjct: 281 DLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E +K   + + M +  V PD    SI+++   K
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCK 377



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           + V+ A  LF+ + R         +   +  L K+ +    + L + +     + ++   
Sbjct: 64  NDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC 123

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA---HDLFLD 161
           + LI+  C+ G +  A  +F  + +   V D +T++ +I GL   GQ+ +A   HD  + 
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVA 183

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +       + I++GTLIHG  ++ E    ++LL ++    V P+  + + ++D + K
Sbjct: 184 L---GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCK 237


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 120/214 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+  EIE + +L  E+   G  P+VVI+ TL  G  +  ++E+A  LF EM + 
Sbjct: 168 IVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKF 227

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+  TYT+ I GL KNG   +  E++  ++      ++  Y+C+++ LCK GR + A
Sbjct: 228 GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDA 287

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    +  ++VTY+ +I GL  + + ++A+ +   M+   + PN+IT+ TLI G
Sbjct: 288 FKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDG 347

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F  + +  K + L   +K + + P     +++V 
Sbjct: 348 FCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVS 381



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 123/219 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  EIE A +L+ EM   G+  +   +  L  GLF+    ++ F+++++MQ  G
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHG 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   ++ LCK+G   ++ ++F  +R      +I  Y+ LI GLC+  +   A 
Sbjct: 264 VFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEAN 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +   V+  +++TY+ +I G  + G++ KA  L  D++   ++P+++T+  L+ GF
Sbjct: 324 KVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGF 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            R  + S   +++ +M+E+ + P     +I++D  A+++
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+  +   A  +  +M S  I P+++ +NTL  G   + ++ +A  L  +++  G
Sbjct: 309 LIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRG 368

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    TY + + G C+ G    + ++ + +     +     Y+ LID   +S  +E A+
Sbjct: 369 LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAI 428

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  S+    LV DV TYS++IHG    GQM++A  LF  M E  + PN + + T+I G+
Sbjct: 429 QLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGY 488

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + L   M+EK + P+ +  S ++ +L K
Sbjct: 489 CKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCK 525



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 108/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  KN   +    +Y +M   G+ P++  +N +   L +  + + AFK+FDEM+  
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRER 297

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY   I GLC+     E+ ++   ++      ++  Y+ LIDG C  G+L  A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKA 357

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   L    L   +VTY++++ G    G    A  +  +MEE  + P+ +T+  LI  
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R +     I+L   M+E  ++PD    S+++
Sbjct: 418 FARSDNMETAIQLRSSMEELGLVPDVHTYSVLI 450



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 109/211 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   ++  AL+L  ++ S+G+ P +V +N L  G         A K+  EM+  G
Sbjct: 344 LIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERG 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYTI ID   ++  +  +++L  ++  L    D+  YS LI G C  G++  A 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF S+   +L  + V Y+ MI G   +G   +A  LF DMEE  +APNV ++  LI   
Sbjct: 464 RLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVL 523

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
            +  +  +  +L+ KM +  + P  +I +++
Sbjct: 524 CKERKLKEAEDLVEKMIDSGIDPSDTICNLI 554



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 107/202 (52%), Gaps = 1/202 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN Y +++ ++ ++  ++EM+ KG  P     N L   +       + +  F+E  + 
Sbjct: 99  VIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKI 157

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  ++ I I G C+ G I +S +L   LR      ++  Y+ LIDG CK G +E A
Sbjct: 158 KVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  + +  LVA+  TY+++IHGL+ +G   +  +++  M+E+ V PN+ T+  +++ 
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQ 277

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
             +        ++  +M+E+ V
Sbjct: 278 LCKDGRTKDAFKVFDEMRERGV 299



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N  CK+   + A  ++ EM  +G+  ++V +NTL  GL    +   A K+ D+M+   
Sbjct: 274 VMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYV 333

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG C  G + +++ L R L+       +  Y+ L+ G C+ G    A 
Sbjct: 334 INPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAA 393

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +    VTY+I+I        M+ A  L   MEE  + P+V T+  LIHGF
Sbjct: 394 KMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGF 453

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               + ++   L   M EK + P+  I + ++    K   S  +L  F   E +E
Sbjct: 454 CIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKE 508



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 85/170 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G+C+  +  GA  +  EM  +GIKP  V +  L         +E A +L   M+  
Sbjct: 378 VLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEEL 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY++ I G C  G + E+  LF+++     E +   Y+ +I G CK G    A
Sbjct: 438 GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L LF  +    L  +V +YS +I  L  + ++ +A DL   M ++ + P+
Sbjct: 498 LRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPS 547



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +V DV ++ I+I G    G+++K+ DL +++ E   +PNV+ + TLI G  +  E  K  
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           +L  +M +  ++ +    ++++  L KN I       F ++E+ +E
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQ---GFEMYEKMQE 261


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 116/205 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +A+DL  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +        E   +M E+N+  D
Sbjct: 327 CCKEGNLBTAFEHRXRMIEENIRLD 351



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 97/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +N L  GL +   +++A  L  EM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E    +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQAN 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +B A +    M E  +  + + +  LI G 
Sbjct: 303 DLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L  M    + PDA   +++++   K 
Sbjct: 363 CQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKK 400



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G       + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 111/220 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+ K  ++  A  L+ EML KG  P V  +N+L  G     +  R   LF +M R 
Sbjct: 162 VLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   +DG CK G +VE+  LF  +R L C  D+ +Y+ L+ G+C  G+   A
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +  D+V+Y+I+I G    G +D A  LF ++ ++ + P+  ++ T+I  
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R  +      +   M      PDA++V  +V  L + E
Sbjct: 342 LCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C+ ++++ A  L +EM+  G +P+VV + +L  GL ++ +++ A  LF  M   
Sbjct: 92  ILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR 151

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y + IDG  K G + E+  LF  +    C   +  Y+ L+ G  + G     
Sbjct: 152 GCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRV 211

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + R   V ++ T++ ++ G    G M +AH LFL+M      P+V+++ TL+ G
Sbjct: 212 QSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRG 271

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                +P +   LL +M    V PD    +I++D  +K+
Sbjct: 272 MCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKS 310



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ A++L+S M+ +G  PD V++N L  G  +   +  A++LF+EM   G
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   + G  + G       LF+ +    C  +I  ++ L+DG CK G +  A 
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAH 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       DVV+Y+ ++ G+ + G+  +A  L  +M  + V P+++++  LI G+
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGY 307

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       I+L +++ +  + PDA   S ++D L +
Sbjct: 308 SKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCR 344



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C+ +  E A +++  M ++G  P+V  ++ L  GL    +V+ A +L +EM   G
Sbjct: 58  LLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGG 117

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   + GLCK G + E+V+LF  +    C  D   Y+ LIDG  K G +  A 
Sbjct: 118 HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAY 177

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +     +  V TY+ ++ G    G+  +   LF DM      PN+ TF  L+ GF
Sbjct: 178 RLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGF 237

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ +  +   L  +M+     PD
Sbjct: 238 CKMGDMVEAHRLFLEMRSLGCPPD 261



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  ++  A  L+ EM S G  PDVV +NTL  G+    +   A +L  EM R G
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSG 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y I IDG  K+G +  +++LF  +     E D  +YS +ID LC++G++  A 
Sbjct: 293 VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAF 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       D      ++ GL    ++ ++ +LF  M +    P +  +  L++  
Sbjct: 353 VVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKL 412

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +      V E+ H++ E+   PD  I  ++++ L +++
Sbjct: 413 CKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSD 451



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 101/211 (47%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+   +     Y++ML  G  P+   +  L   L +  + E A  +F  M   G + +  
Sbjct: 29  KSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVF 88

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           +Y+I I GLC+   + E+ EL   +     + ++  Y  L+ GLCK G+L+ A++LF  +
Sbjct: 89  SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  D V Y+++I G    G M +A+ LF +M E    P V T+ +L+ GF R  E 
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +V  L   M  +  +P+    + ++D   K
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N L   L +  + +  +  +++M   G   +T TY   +  LC+     E+  +FR + 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
              C  ++ +YS LI GLC+  +++ A EL + +  G    +VVTY  ++ GL   G++ 
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           +A DLF  M      P+ + +  LI GF +  +  +   L  +M EK  +P
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY K+  ++ A+ L+ E+   G++PD   ++T+   L    +V  AF +F +M  +
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D       + GLC+   + ES ELF+ +   +C   I  Y+ L+  LCK+ R +  
Sbjct: 362 GSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDV 421

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGL 146
            E+FH L       DV    +++  L
Sbjct: 422 CEIFHELTERGFSPDVEISKVILETL 447



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 77/154 (50%)

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
           T +Y   ++ L K+G        +  +    C  +   Y  L+  LC++ R E A  +F 
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +       +V +YSI+I GL    ++D+A +L  +M +    PNV+T+G+L+ G  ++ 
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  + ++L  +M  +   PD  + ++++D  +K 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK 170


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++E    L  EM+ +GI+PD   +N L  G+  I +++ A  L++E +   
Sbjct: 599 LISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRD 658

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY + IDG CK   I E  +LF  L     EL+   Y+ LI   C++G    A 
Sbjct: 659 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAF 718

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +     TYS +IHG+ N G+M+ A  L  +M +  + PNV+ +  LI G+
Sbjct: 719 KLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGY 778

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ +  KV+ +L +M   ++ P+    ++++D  +K+
Sbjct: 779 CKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKS 816



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 13/245 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C+  +++ A+NL++E  S+ + P+V  +  +  G  +  ++E   KLF E+   
Sbjct: 633 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 692

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  ++  Y   I   C+NG  VE+ +L   +R          YS LI G+C  GR+E A
Sbjct: 693 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 752

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  L+ +VV Y+ +I G    GQMDK  ++  +M    + PN IT+  +I G
Sbjct: 753 KCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDG 812

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD------------LLAKNEISLNSLPS 228
           + +  +     +LLH+M  K ++PD    +++ +            LLA++ +  NS P 
Sbjct: 813 YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGVGFNS-PL 871

Query: 229 FTVHE 233
           F +HE
Sbjct: 872 FLIHE 876



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +  AL +  +M+SKGI P+ V  N++  G  +I Q+E+A  + +EM   G
Sbjct: 424 LIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG 483

Query: 62  VAADTRTYTIFI-----------------------------------DGLCKNGYIVESV 86
            + +   +T  I                                    GLCK G   ++V
Sbjct: 484 FSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAV 543

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           EL+  L       ++   + LI GLCK+G ++ A+ L   +     V D +TY+ +I G 
Sbjct: 544 ELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGC 603

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++++   L  +M +  + P+  T+  LIHG  RI +  + + L ++ K ++++P+ 
Sbjct: 604 CKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNV 663

Query: 207 SIVSIVVDLLAK 218
               +++D   K
Sbjct: 664 YTYGVMIDGYCK 675



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 122/232 (52%), Gaps = 3/232 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C N   E AL    EML + ++P+  +  TL  GL +  +   A +L+  +   G
Sbjct: 494 IIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKG 553

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  T    I GLCK G + E+V L + +      LD   Y+ LI G CK G++E   
Sbjct: 554 FGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGF 613

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  D  TY+++IHG+   G++D+A +L+ + +   + PNV T+G +I G+
Sbjct: 614 KLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY 673

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
            + ++  +  +L  ++  +N+  ++ + + ++    +N    N++ +F +H+
Sbjct: 674 CKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNG---NTVEAFKLHD 722



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +   A+ L+  +L KG   ++V  N L  GL +   ++ A +L  +M   G
Sbjct: 529 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG 588

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I G CK G + E  +L   +     E D   Y+ LI G+C+ G+L+ A+
Sbjct: 589 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 648

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++      LV +V TY +MI G     ++++   LF ++    +  N + + TLI  +
Sbjct: 649 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 708

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     +  +L   M+ K + P  +  S ++
Sbjct: 709 CRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 740



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 1   ILINGYC---KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LI+ YC   +N     A+ ++  + +KG+ P V     L   L + +++E+++ +F+ M
Sbjct: 246 LLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM 305

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            R GV+ D   ++  I+  CK G + ++++LF  +  L    ++  Y+ LI GLCK G L
Sbjct: 306 -RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNL 364

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A      + +  + A ++TYS++I+GL    + ++A+ +  +  E    PN + + TL
Sbjct: 365 DEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTL 424

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I G+ ++      + +   M  K + P++  ++ ++    K
Sbjct: 425 IDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCK 465



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 108/216 (50%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           IN +CK  ++E A+ L+ +M   G+ P+VV +N L  GL +   ++ AF+  ++M +DGV
Sbjct: 320 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 379

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
            A   TY++ I+GL K     E+  + +         +   Y+ LIDG CK G L  AL 
Sbjct: 380 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 439

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +   +    +  + VT + +I G    GQM++A  +  +M     + N   F T+IH   
Sbjct: 440 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 499

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  L +M  +N+ P+  +++ +V  L K
Sbjct: 500 MNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 535



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K ++   A ++  E L KG  P+ V++NTL  G  ++  +  A ++  +M   
Sbjct: 388 VLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSK 447

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++ T    I G CK G + ++  +   +      ++  A++ +I  LC + R E A
Sbjct: 448 GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESA 507

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     +    +  +    + ++ GL  +G+   A +L+  + E     N++T   LIHG
Sbjct: 508 LRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHG 567

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     + + LL KM E+  + D
Sbjct: 568 LCKTGNMQEAVRLLKKMLERGFVLD 592



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L++   K  E+E +  ++ E + +G+ PDV + +T      +  +VE A +LF +M++ 
Sbjct: 284 FLLSSLVKANELEKSYWVF-ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKL 342

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY   I GLCK+G + E+      +        +  YS LI+GL K  +   A
Sbjct: 343 GVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEA 402

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             +   +L +G    +VV Y+ +I G    G +  A  +  DM    + PN +T  ++I 
Sbjct: 403 NSVLKETLEKGFTPNEVV-YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQ 461

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF +I +  +   +L +M  +    +    + ++  L  N 
Sbjct: 462 GFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNS 502



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++ +FR L        ++  + L+  L K+  LE +  +F ++ +GV   DV  +S  I+
Sbjct: 263 AIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGV-SPDVYLFSTAIN 321

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                G+++ A  LF DME+  V+PNV+T+  LIHG  +     +      KM +  V  
Sbjct: 322 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 381

Query: 205 DASIVSIVVDLLAKNE 220
                S++++ L K E
Sbjct: 382 TLITYSVLINGLMKLE 397


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 125/228 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN YCK +++  A   +SEM + G+KP+VV ++TL     +   ++ A KLF +M+R G
Sbjct: 365 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTG 424

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID  CK G + E+ +L   +     +L+I  Y+ L+DGLCK+GR+  A 
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 484

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F S+ +  +  +   Y+ ++HG     +M+ A  +   M E  + P++I +G++I G 
Sbjct: 485 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 544

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
               +  +   +L +MK + +  +  I + ++D   K   S ++L  F
Sbjct: 545 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFF 592



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C  +++E    +  EM S+GI  + VI  T+    F+  +   A   F EMQ  G
Sbjct: 540 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 599

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A   TY + IDGLCK G +  +V+ F  +  L  + ++  Y+ LIDGLCK+  +E A 
Sbjct: 600 VEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAK 659

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  D+  ++ +I G    G + +A  L   M E A+  ++  + +L+ GF
Sbjct: 660 KLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGF 719

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  E  +  +  ++M EK ++P+
Sbjct: 720 SQCGELHQARKFFNEMIEKGILPE 743



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK  ++E +  L+ +M   G+ PDVV +N+L  G  ++  +E    LF+EM+  
Sbjct: 294 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 353

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+  CK   +  + E F  ++    + ++  YS LID  CK G ++ A
Sbjct: 354 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 413

Query: 121 LELFHSLPRGVLVA-----------------------------------DVVTYSIMIHG 145
           ++LF  + R  L+                                    ++VTY+ ++ G
Sbjct: 414 IKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 473

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+M +A ++F  M ++ ++PN   +  L+HG+I+       +++L +M E N+ PD
Sbjct: 474 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 533



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY K + +E A+ +  +M    IKPD++++ ++  G     ++E    + +EM+  G
Sbjct: 505 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 564

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++A+    T  ID   K G   +++  F+ ++ +  E  I  Y  LIDGLCK+G +E+A+
Sbjct: 565 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV 624

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  +    L  +V  Y+ +I GL  +  ++ A  LF +M+   + P++  F  LI G 
Sbjct: 625 DYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 684

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++     + + L+ +M E  +  D  + + +V 
Sbjct: 685 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVS 717



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 100/201 (49%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            +++M+  GI P V  +N +   L +   +E + +LF +M+  G++ D  TY   IDG  
Sbjct: 276 FFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYG 335

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + E   LF  ++ + C  DI  Y+ LI+  CK  ++  A E F  +    L  +VV
Sbjct: 336 KVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVV 395

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TYS +I     +G M  A  LF+DM    + PN  T+ +LI    +    ++  +LL+ M
Sbjct: 396 TYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 455

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            +  V  +    + ++D L K
Sbjct: 456 LQAGVKLNIVTYTALLDGLCK 476



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   +E A++ +  MLS G++P+V ++ +L  GL + + +E A KLFDEMQ  
Sbjct: 609 VLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCR 668

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   +T  IDG  K+G + E++ L   +  L  E D+  Y+ L+ G  + G L  A
Sbjct: 669 GMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQA 728

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
            + F+ +  +G+L  +V+    ++   Y  GQ+D+A +L  +ME 
Sbjct: 729 RKFFNEMIEKGILPEEVLCIC-LLREYYKRGQLDEAIELKNEMER 772



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           K F++M   G+A    TY + ID LCK G +  S  LF  +R +    D+  Y+ LIDG 
Sbjct: 275 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 334

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            K G LE    LF+ +     V D++TY+ +I+      +M +A + F +M+ N + PNV
Sbjct: 335 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 394

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +T+ TLI  F +       I+L   M+   ++P+    + ++D
Sbjct: 395 VTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ Y K  +   ALN + EM   G++  +V +  L  GL +   VE A   F  M   G
Sbjct: 575 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLG 634

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDGLCKN  I  + +LF  ++      DI A++ LIDG  K G L+ AL
Sbjct: 635 LQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEAL 694

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  D+  Y+ ++ G    G++ +A   F +M E  + P  +    L+  +
Sbjct: 695 VLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREY 754

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +  + IEL ++M+   ++ +++ +   V
Sbjct: 755 YKRGQLDEAIELKNEMERMGLITESATMQFPV 786



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  A  L ++ML  G+K ++V +  L  GL +  ++  A ++F  M +DG
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ + + YT  + G  K   + +++++ + +     + D+  Y  +I G C   +LE   
Sbjct: 495 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 554

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    + A+ V  + +I   +  G+   A + F +M++  V   ++T+  LI G 
Sbjct: 555 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 614

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +       ++   +M    + P+ ++ + ++D L KN
Sbjct: 615 CKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKN 652



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 97/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   +  A  ++  ML  GI P+  ++  L  G  +  ++E A K+  +M    
Sbjct: 470 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I G C    + E+  +   ++      +    + +ID   K+G+   AL
Sbjct: 530 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    + A +VTY ++I GL   G ++ A D F  M    + PNV  + +LI G 
Sbjct: 590 NFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + N      +L  +M+ + + PD +  + ++D
Sbjct: 650 CKNNCIESAKKLFDEMQCRGMTPDITAFTALID 682



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%)

Query: 33  IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           + + LF    E+  +E A + F  M+        R+    +  L K+G      + F  +
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 280

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                   +  Y+ +ID LCK G LE +  LF  +    L  DVVTY+ +I G    G +
Sbjct: 281 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 340

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           ++   LF +M++    P++IT+  LI+ + +  +  +  E   +MK   + P+    S +
Sbjct: 341 EEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTL 400

Query: 213 VDLLAKNEISLNSLPSFTVHER 234
           +D   K  +   ++  F    R
Sbjct: 401 IDAFCKEGMMQGAIKLFVDMRR 422


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   +E     + EM ++G +PD V +  L  G  +   + +A +++ +M + G
Sbjct: 330 IIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T TY I +DGLCK G + E+   F  +    C   +  YS L+DG C  G +  A+
Sbjct: 390 TVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAV 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       ++V+Y+I+I GL   G++ KA+  F  + +  + P+V TF + +HG 
Sbjct: 450 ELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGL 509

Query: 182 I-RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R++     +EL   M  +   P+    SI++D + +
Sbjct: 510 CQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICR 547



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 13/244 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  +++ A+ L  EM      PD+V    +  GL    +++ AF + +   R G
Sbjct: 15  LLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAG 71

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY +FIDGLCK   + ++ +L + +   KC      Y+ L+DGL K+GRL+ A+
Sbjct: 72  CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAM 131

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +        + TY+++I GL   G++++A  +F+DM  N   P+   +  LI G 
Sbjct: 132 AILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191

Query: 182 IRINEPSKVIELLHKMKE----KNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            +I +  + +  L++M E    + V PD  I ++V+  L  +    ++L  F      +E
Sbjct: 192 AKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYF------DE 245

Query: 238 VDES 241
           +D+S
Sbjct: 246 LDDS 249



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 113/204 (55%), Gaps = 2/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C    +  A+ L+  ML +G +P++V +N +  GL    ++ +A+  F+++ +  
Sbjct: 435 LMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRR 494

Query: 62  VAADTRTYTIFIDGLCKN-GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D  T+  F+ GLC+    + + VELF ++       ++ +YS L+DG+C++G LE+ 
Sbjct: 495 LCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVT 554

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+FH +    +  DVV ++ +I  L   G++D+A ++F ++E  + AP+  ++ +L+  
Sbjct: 555 LEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDA 613

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             R     +   L   MK +   P
Sbjct: 614 LSRCERMEEARLLSFHMKLQGCAP 637



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K   ++ AL    E + +G  PD V + ++  GL ++ +VE   + F EM+  G
Sbjct: 295 LVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG 354

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   IDG  K   I ++  ++R +      +    Y+ ++DGLCK+GR+  A 
Sbjct: 355 YEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAY 414

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F ++     VA VVTYS ++ G  ++G +  A +LF  M +    PN++++  +I G 
Sbjct: 415 ATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGL 474

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R  + +K      K+ ++ + PD
Sbjct: 475 CRAGKLAKAYFYFEKLLQRRLCPD 498



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK +  E A+    +M  +   P +  + +L  G  ++ +++ A     E    G
Sbjct: 260 LVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERG 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  IDGLCK G + E  E F  +R    E D   Y+ LIDG  K+  +  A 
Sbjct: 320 FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAH 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  + +   V   VTY+I++ GL   G++ +A+  FL MEE      V+T+  L+ GF
Sbjct: 380 RVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGF 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 S  +EL  +M ++   P+    +I++  L +
Sbjct: 440 CSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 476



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEML----SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           LI+G  K  +++ AL   ++M+    ++G++PDVVIHN +   L     +E A   FDE+
Sbjct: 187 LISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDEL 246

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
             D +     T+   +  LCK     E++   + +   +C   +  Y+ L+DG  K GRL
Sbjct: 247 D-DSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRL 305

Query: 118 EIA-LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A L+L  ++ RG  + D VTY+ +I GL   G++++  + F +M      P+ +T+  
Sbjct: 306 DEALLQLKEAVERG-FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAA 364

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           LI GF++     K   +  +M +   +      +I++D L K      +  +F   E +
Sbjct: 365 LIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEER 423



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 38/252 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+ K ++ A ++    +  G +PD V +N    GL +  +V+ AF+L  +M   
Sbjct: 46  VVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEK 105

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                T TYT  +DGL K G + E++ +   +        ++ Y+ +IDGL K+GR+E A
Sbjct: 106 KCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEA 165

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA----PNVI---- 172
             +F  +       D   Y+ +I GL   G++D+A      M EN  A    P+V+    
Sbjct: 166 RRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNL 225

Query: 173 ------------------------------TFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
                                         TF  L+    +     + I  + KM E+  
Sbjct: 226 VIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRC 285

Query: 203 MPDASIVSIVVD 214
            P     + +VD
Sbjct: 286 FPTLFTYTSLVD 297



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 40/257 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G CK + ++ A  L  +M  K   P  V +  L  GL +  +++ A  + ++M   
Sbjct: 81  VFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEK 140

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +   +TYT+ IDGL K G + E+  +F  +    C  D   Y+ LI GL K G+L+ A
Sbjct: 141 GNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEA 200

Query: 121 LELFHSL-----PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF--LD------------ 161
           L   + +      RGV   DVV ++++I  L   G ++ A   F  LD            
Sbjct: 201 LVYLNQMVENGCARGV-EPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNP 259

Query: 162 --------------------MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
                               M E    P + T+ +L+ GF+++    + +  L +  E+ 
Sbjct: 260 LVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERG 319

Query: 202 VMPDASIVSIVVDLLAK 218
            +PDA   + ++D L K
Sbjct: 320 FIPDAVTYTSIIDGLCK 336



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK   +  A   +  M  +G    VV ++ L  G      V  A +LF  M   
Sbjct: 399 IILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDR 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI- 119
           G   +  +Y I I GLC+ G + ++   F  L   +   D+  ++  + GLC+  RL+  
Sbjct: 459 GCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQ--RLDTV 516

Query: 120 --ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              +ELF S+       ++ +YSI++ G+   G ++   ++F +M    VAP+V+ F TL
Sbjct: 517 GDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTL 576

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I          + +E+  ++ E+   PDA     ++D L++ E
Sbjct: 577 IRWLCIAGRVDEALEVFREL-ERRSAPDAWSYWSLLDALSRCE 618



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           DTR  T  ++GLCK G +  ++ L   L  + C  D+ A++ +I+GLC+  RL+ A  + 
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLL---LDEMPCSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
               R     D VTY++ I GL    ++D A  L   M+E    P  +T+  L+ G ++ 
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 124

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               + + +L +M EK   P     ++V+D L+K
Sbjct: 125 GRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSK 158



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 99  LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           +D +  + L++GLCK+G+L+ A+ L   +P      D+V ++++I+GL  + ++D+A  +
Sbjct: 7   VDTRVCTALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSV 63

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     P+ +T+   I G  +        +LL KM EK  +P     + +VD L K
Sbjct: 64  LERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLK 123


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   I ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N   D  + + ++  L +   S+++
Sbjct: 327 CCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDA 371



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   DG +D A +    M +     + + +  LI G 
Sbjct: 303 HLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  +     ++L +M    + PDA   +++++   K 
Sbjct: 363 CREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK+G +  + E  + +      LD   Y+ LI GLC+ G+   A 
Sbjct: 313 LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +I+ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +     D V Y+ +I GL  +GQ   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + ++D A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 237 EMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/217 (18%), Positives = 97/217 (44%), Gaps = 17/217 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C ++ +  A +L   ++S+  K      + +F  +FE    +R+           
Sbjct: 25  MIHFLCTHQMLSEAKSLIQVVVSRKGKGSA---SAVFAAIFETKGTQRS----------- 70

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++  
Sbjct: 71  ---DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVW 127

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+
Sbjct: 128 GFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGY 187

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           IR+ +  +   L   M    V PD    S++++ L K
Sbjct: 188 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|147742778|gb|ABQ50558.1| hypothetical protein [Brassica rapa]
          Length = 277

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK K +   + L+ E+  +G+  + V ++TL  G  E  ++  A +LF EM   G
Sbjct: 55  LINGYCKAKRVVDGMKLFREISLRGLVANTVTYSTLIQGFCEAGKLNVAKELFQEMVSRG 114

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+    TY I +DGLC NG + E++E+   ++  K  +DI  Y+ +I G+C + R++ A 
Sbjct: 115 VSPSVVTYGILLDGLCDNGELEEALEILEKMQKCKMGIDIGIYNIIIHGMCNARRVDDAW 174

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
           ELF SL P   +  DV TY++MI GL   G + +A  LF  M EE+  AP+  T+ TLI 
Sbjct: 175 ELFSSLLPLKGVKPDVKTYNVMIGGLCKKGSLSEADKLFKKMGEEDETAPSECTYNTLIR 234

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +  +  +  +EL+ +MK      DAS + +V+D+LA   ++
Sbjct: 235 AHLGGSGVATSVELIEEMKRCGFSADASTMKMVIDMLADGRLT 277



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 3/203 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           LY+EM+ +GI PD + + +L  GL   ++++ A ++ D M   G      TY   I+G C
Sbjct: 1   LYNEMVPRGIDPDTITYTSLIYGLCMENRLDEANQMMDLMVSKGCEPSIVTYGTLINGYC 60

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADV 136
           K   +V+ ++LFR + +     +   YS LI G C++G+L +A ELF  +  RGV    V
Sbjct: 61  KAKRVVDGMKLFREISLRGLVANTVTYSTLIQGFCEAGKLNVAKELFQEMVSRGV-SPSV 119

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VTY I++ GL ++G++++A ++   M++  +  ++  +  +IHG           EL   
Sbjct: 120 VTYGILLDGLCDNGELEEALEILEKMQKCKMGIDIGIYNIIIHGMCNARRVDDAWELFSS 179

Query: 197 MKE-KNVMPDASIVSIVVDLLAK 218
           +   K V PD    ++++  L K
Sbjct: 180 LLPLKGVKPDVKTYNVMIGGLCK 202



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D   Y+ LI GLC   RL+ A ++   +        +VTY  +I+G     ++     LF
Sbjct: 13  DTITYTSLIYGLCMENRLDEANQMMDLMVSKGCEPSIVTYGTLINGYCKAKRVVDGMKLF 72

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  N +T+ TLI GF    + +   EL  +M  + V P      I++D L  N
Sbjct: 73  REISLRGLVANTVTYSTLIQGFCEAGKLNVAKELFQEMVSRGVSPSVVTYGILLDGLCDN 132



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQR 59
           IL++G C N E+E AL +  +M    +  D+ I+N +  G+    +V+ A++LF   +  
Sbjct: 124 ILLDGLCDNGELEEALEILEKMQKCKMGIDIGIYNIIIHGMCNARRVDDAWELFSSLLPL 183

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA-----YSCLIDGLCKS 114
            GV  D +TY + I GLCK G + E+ +LF+ +     E D  A     Y+ LI      
Sbjct: 184 KGVKPDVKTYNVMIGGLCKKGSLSEADKLFKKMG----EEDETAPSECTYNTLIRAHLGG 239

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
             +  ++EL   + R    AD  T  ++I  +  DG++
Sbjct: 240 SGVATSVELIEEMKRCGFSADASTMKMVID-MLADGRL 276


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+   ++ A  +  EM  KG  PD V +NTL  G  +     +A  +  EM R+
Sbjct: 85  VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+    TYT  I+ +CK   +  ++E F  +RI     + + Y+ LIDG  + G L  A
Sbjct: 145 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             + + +        VVTY+  IHG     +M++A  +  +M E  +AP+V+++ T+I G
Sbjct: 205 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  E  +  ++  +M EK V PDA   S ++  L +
Sbjct: 265 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 302



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK      AL +++EM+  G+ P VV +  L   + +   + RA + FD+M+  G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + RTYT  IDG  + G + E+  +   +        +  Y+  I G C   R+E AL
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  DVV+YS +I G    G++D+A  +  +M E  V+P+ +T+ +LI G 
Sbjct: 241 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +   ++  +L  +M +  + PD    + +++
Sbjct: 301 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLIN 333



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C   E++  L  + EM   G  P+VV +NTL     ++ +++ AF L   M   
Sbjct: 15  ILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSK 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +Y + I+GLC+ G + E+ E+   +       D   Y+ L++G CK G    A
Sbjct: 75  GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   + R  +   VVTY+ +I+ +     +++A + F  M    + PN  T+ TLI G
Sbjct: 135 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F R    ++   +L++M E    P
Sbjct: 195 FSRQGLLNEAYRILNEMTESGFSP 218



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 103/197 (52%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+   + P+V  +N L  G   + ++++    F EM+R+G   +  TY   ID  CK G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           I E+  L +++     + ++ +Y+ +I+GLC+ G ++ A E+   +       D VTY+ 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +++G   +G   +A  +  +M  N V+P+V+T+  LI+   +    ++ +E   +M+ + 
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 202 VMPDASIVSIVVDLLAK 218
           + P+    + ++D  ++
Sbjct: 181 LRPNERTYTTLIDGFSR 197



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G+C  + +E AL +  EM+ KG+ PDVV ++T+  G     +++RAF++  EM   G
Sbjct: 226 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY+  I GLC+   + E+ +L + +  +    D   Y+ LI+  C  G L  AL
Sbjct: 286 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKAL 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + D VTYS++I+GL    +  +A  L   +      P+ +T+ TLI   
Sbjct: 346 HLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENC 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
             I E   V+ L+     K +M +A  V
Sbjct: 406 SNI-EFKSVVALIKGFCMKGLMHEADRV 432



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +   +  A  + +EM   G  P VV +N    G   + ++E A  +  EM   G
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  +Y+  I G C+ G +  + ++ + +       D   YS LI GLC+  RL  A 
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 310

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I+    +G ++KA  L  +M      P+ +T+  LI+G 
Sbjct: 311 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGL 370

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     +   LL K+  +  +P      +  D L +N
Sbjct: 371 NKQARTREAKRLLFKLIYEESVPS----DVTYDTLIEN 404



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 52/265 (19%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV-------------- 47
           +I+G+C+  E++ A  +  EM+ KG+ PD V +++L  GL E+ ++              
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 48  ---------------------ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                 +A  L DEM   G   D  TY++ I+GL K     E+ 
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 380

Query: 87  EL---------------FRTLRILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
            L               + TL I  C  ++ ++   LI G C  G +  A  +F S+   
Sbjct: 381 RLLFKLIYEESVPSDVTYDTL-IENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVER 439

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
                   Y+++IHG    G + KA +L+ +M  +   P+ +T  TLI    +     ++
Sbjct: 440 NHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEM 499

Query: 191 IELLHKMKEKNVMPDASIVSIVVDL 215
            E++        + +A +  ++V++
Sbjct: 500 SEVIGDTLRSCRLNEAELAKVLVEI 524


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 118/212 (55%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G+C+  ++  A  L+ EML +G++PD++    L  G  +   ++ AF++ + M + G
Sbjct: 815  IISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG 874

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             + +  TYT  IDGLCK G +  + EL   +  +  + +I  Y+ +++GLCKSG +E A+
Sbjct: 875  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 934

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L        L AD VTY+ ++      G+MDKA ++  +M    + P ++TF  L++GF
Sbjct: 935  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGF 994

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                      +LL+ M  K + P+A+  + +V
Sbjct: 995  CLHGMLEDGEKLLNWMLAKGIAPNATTFNCLV 1026



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 110/203 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  +I  A   + EM S+ I PDV+ +  +  G  +I  +  A KLF EM   G
Sbjct: 780 LVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRG 839

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  ++G CK G+I ++  +   +    C  ++  Y+ LIDGLCK G L+ A 
Sbjct: 840 LEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 899

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H + +  L  ++ TY+ +++GL   G +++A  L  + E   +  + +T+ TL+  +
Sbjct: 900 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 959

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +  E  K  E+L +M  K + P
Sbjct: 960 CKSGEMDKAQEILTEMLGKGLQP 982



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 114/213 (53%), Gaps = 3/213 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  E E A   +SEM+ +GI PD +++ TL  G  +   +  A K F EM    +  D 
Sbjct: 753 CKLAEAEEA---FSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDV 809

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I G C+ G +VE+ +LF  +     E DI  ++ L++G CK+G ++ A  + + 
Sbjct: 810 LTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNH 869

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +     +VVTY+ +I GL  +G +D A++L  +M +  + PN+ T+ ++++G  +   
Sbjct: 870 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 929

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + ++L+ + +   +  D    + ++D   K+
Sbjct: 930 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGYC+  E++    L  +M  KG+KP+   + ++   L  I ++  A + F EM   G
Sbjct: 710 VINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQG 769

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT  YT  +DG CK G I  + + F  +       D+  Y+ +I G C+ G +  A 
Sbjct: 770 ILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 829

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH +    L  D++T++ +++G    G +  A  +   M +   +PNV+T+ TLI G 
Sbjct: 830 KLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 889

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +     ELLH+M +  + P+    + +V+ L K+
Sbjct: 890 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 927



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L+NGYCK   I+ A  +++ M+  G  P+VV + TL  GL +   ++ A +L  EM + G
Sbjct: 850  LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  +  TY   ++GLCK+G I E+V+L           D   Y+ L+D  CKSG ++ A 
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            E+   +    L   +VT++++++G    G ++    L   M    +APN  TF  L+  +
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029

Query: 182  IRINEPSKVIELLHKMKEKNVMPDA 206
               N       +   M  + V PD 
Sbjct: 1030 CIRNNLKAATAIYKDMCSRGVEPDG 1054



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 101/212 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G CK  +++ A  L  EM   G++P++  +N++  GL +   +E A KL  E +  G
Sbjct: 885  LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 944

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + ADT TYT  +D  CK+G + ++ E+   +     +  I  ++ L++G C  G LE   
Sbjct: 945  LNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1004

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L + +    +  +  T++ ++        +  A  ++ DM    V P+  T+  L+ G 
Sbjct: 1005 KLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGH 1064

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                   +   L  +MK K      S  S+++
Sbjct: 1065 CNARNMKEAWFLFQEMKGKGFSVSVSTYSVLI 1096



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 99/219 (45%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++NG CK+  IE A+ L  E  + G+  D V + TL     +  ++++A ++  EM   G
Sbjct: 920  IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKG 979

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +     T+ + ++G C +G + +  +L   +       +   ++CL+   C    L+ A 
Sbjct: 980  LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAAT 1039

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             ++  +    +  D  TY  ++ G  N   M +A  LF +M+    + +V T+  LI GF
Sbjct: 1040 AIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 1099

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +  +  E+  +M+   +  D  I     D   K +
Sbjct: 1100 FKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGK 1138



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS-GRLEIAL 121
            +D R + +F   L + G + E+ ++F  +      L + + +  +  L K   +   A+
Sbjct: 595 GSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAI 654

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F   P   +  +V +Y+I+IH +   G++++AH L L ME     P+VI++ T+I+G+
Sbjct: 655 IVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGY 714

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E  KV +L+ KMK+K + P++     ++ LL +
Sbjct: 715 CRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCR 751



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 91/191 (47%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ ++ E    G+  +V  +N +   + ++ ++  A  L   M+  G   D  +Y+  I+
Sbjct: 653 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVIN 712

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+ G + +  +L   ++    + +   Y  +I  LC+  +L  A E F  +    ++ 
Sbjct: 713 GYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILP 772

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D + Y+ ++ G    G +  A   F +M    + P+V+T+  +I GF +I +  +  +L 
Sbjct: 773 DTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 832

Query: 195 HKMKEKNVMPD 205
           H+M  + + PD
Sbjct: 833 HEMLCRGLEPD 843



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN-GYIVESVEL 88
           D  + +  F  L E   +  A K+F++M   G+     +  +++  L K+      ++ +
Sbjct: 597 DPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIV 656

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           FR    +    ++ +Y+ +I  +C+ GR+  A  L   +       DV++YS +I+G   
Sbjct: 657 FREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCR 716

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++DK   L   M++  + PN  T+G++I    RI + ++  E   +M  + ++PD  +
Sbjct: 717 FGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIV 776

Query: 209 VSIVVDLLAK-NEISLNSLPSFTVHER 234
            + +VD   K  +I   S   + +H R
Sbjct: 777 YTTLVDGFCKRGDIRAASKFFYEMHSR 803



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 1/200 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
           A  ++ +ML+ G+   V   N     L  + ++   A  +F E    GV  +  +Y I I
Sbjct: 617 ARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVI 676

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
             +C+ G I E+  L   + +     D+ +YS +I+G C+ G L+   +L   + +  L 
Sbjct: 677 HFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLK 736

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            +  TY  +I  L    ++ +A + F +M    + P+ I + TL+ GF +  +     + 
Sbjct: 737 PNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKF 796

Query: 194 LHKMKEKNVMPDASIVSIVV 213
            ++M  +++ PD    + ++
Sbjct: 797 FYEMHSRDITPDVLTYTAII 816



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +L+NG+C +  +E    L + ML+KGI P+    N L       + ++ A  ++ +M   
Sbjct: 989  VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSR 1048

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            GV  D +TY   + G C    + E+  LF+ ++     + +  YS LI G  K  +   A
Sbjct: 1049 GVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEA 1108

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
             E+F  + R  L AD   +       Y   + D   D   ++ EN
Sbjct: 1109 REIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 1153


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 114/209 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C +  I+ A  ++  M+SKG   DVV +NTL  G  +  +VE   KLF EM + G
Sbjct: 301 LVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ++T TY   I G  + G + ++ E F  +       DI  Y+ L+ GLC +G LE AL
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  D+VTY+ +I G+   G++++A  LF  +    + P+++T+ T++ G 
Sbjct: 421 VIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
                  +V  L  KMK++ +M +   +S
Sbjct: 481 CTKGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+   +  A++L  +M+  G KPD+V +N +   L +  +V  AF  F E++R G
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 62  VAADTRTYTIFIDGLC-----------------------------------KNGYIVESV 86
           +  +  TYT  ++GLC                                   KNG ++E+ 
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ELF  +  +  + DI  YS L++GLC   R++ A ++F  +     +ADVV+Y+ +I+G 
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               +++    LF +M +  +  N +T+ TLI GF +  +  K  E   +M    + PD 
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 207 SIVSIVVDLLAKN 219
              +I++  L  N
Sbjct: 401 WTYNILLGGLCDN 413



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C +     A  L S+M+ K I P+V+ ++ L     +  +V  A +LF+EM R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  ++GLC +  I E+ ++F  +    C  D+ +Y+ LI+G CK+ R+E  +
Sbjct: 291 IDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + +  LV++ VTY+ +I G +  G +DKA + F  M+   ++P++ T+  L+ G 
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               E  K + +   M+++ +  D    + V+  + K 
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 448



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 111/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + KN ++  A  L+ EM+   I PD+V +++L  GL    +++ A ++FD M   G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  +Y   I+G CK   + + ++LFR +       +   Y+ LI G  ++G ++ A 
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F  +    +  D+ TY+I++ GL ++G+++KA  +F DM++  +  +++T+ T+I G 
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGM 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  +   L   +  K + PD
Sbjct: 446 CKTGKVEEAWSLFCSLSLKGLKPD 469



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 105/197 (53%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C   ++  AL++  +ML  G +PD V   +L  G    ++V  A  L D+M   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   ID LCK   + ++ + F+ +       ++  Y+ L++GLC S R   A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+TYS ++     +G++ +A +LF +M   ++ P+++T+ +L++G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNG 304

Query: 181 FI---RINEPSKVIELL 194
                RI+E +++ +L+
Sbjct: 305 LCLHDRIDEANQMFDLM 321



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 107/216 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K K+ +  ++L  +M   GI+ D+   N +        QV  A  +  +M + G
Sbjct: 91  LLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLG 150

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T    ++G C+   + ++V L   +  +  + DI AY+ +ID LCK+ R+  A 
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + R  +  +VVTY+ +++GL N  +   A  L  DM +  + PNVIT+  L+  F
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  +  +  EL  +M   ++ PD    S +V+ L 
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLC 306



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 98/209 (46%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++  A++L+S+M+     P +V  N L   + ++ + +    L  +M+  G+  D  T+ 
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C    +  ++ +   +  L  E D      L++G C+  R+  A+ L   +   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D+V Y+ +I  L    +++ A D F ++E   + PNV+T+  L++G    +  S  
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             LL  M +K + P+    S ++D   KN
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKN 273



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C N E+E AL ++ +M  + +  D+V + T+  G+ +  +VE A+ LF  +   
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           G+  D  TYT  + GLC  G + E   L+  ++
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497



 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ T++I+I+      Q+  A  +   M +    P+ +T G+L++GF R N  S  + L+
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            KM E    PD    + ++D L K +   ++   F   ER+
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++   + Y+EML K I P+VV +N++   L +   V++A ++   M + G
Sbjct: 18  VINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 77

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   + G C +G   E++   + +R    E D+  Y+ L+D LCK+GR   A 
Sbjct: 78  VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEAR 137

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  D+ TY  ++ G    G + + H L   M  N + PN   F  L+  +
Sbjct: 138 KIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAY 197

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + P+A     V+D+L K+
Sbjct: 198 AKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKS 235



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 103/207 (49%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           PDVV ++T+  G F+   +++ +  ++EM    ++ +  TY   I  LCK   + +++E+
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
             T+       D   Y+ ++ G C SG+ + A+     +    +  DVVTY+ ++  L  
Sbjct: 70  LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 129

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G+  +A  +F  M +  + P++ T+GTL+ G+       ++  LL  M    + P+  +
Sbjct: 130 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 189

Query: 209 VSIVVDLLAKNEISLNSLPSFTVHERQ 235
            SI+V   AK E    ++  F+   +Q
Sbjct: 190 FSILVCAYAKQEKVEEAMLVFSKMRQQ 216



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 96/204 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KPD+  + TL  G      +     L D M R+G
Sbjct: 123 LMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG 182

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I +    K   + E++ +F  +R      +   Y  +ID LCKSGR+E A+
Sbjct: 183 IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAM 242

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L  D + Y+ +IH L    + +KA +LFL+M +  +  + I F ++I   
Sbjct: 243 LYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSH 302

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     + ++L   M    V PD
Sbjct: 303 CKEGRVIESVKLFDLMVRIGVKPD 326



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 112/268 (41%), Gaps = 35/268 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ + + M+  G+ PD + +N++  G     Q + A     +M+ DG
Sbjct: 53  IIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG 112

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG------ 115
           V  D  TY   +D LCKNG   E+ ++F ++     + DI  Y  L+ G    G      
Sbjct: 113 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 172

Query: 116 -----------------------------RLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                        ++E A+ +F  + +  L  + VTY  +I  L
Sbjct: 173 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL 232

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+++ A   F  M +  + P+ I + +LIH     ++  K  EL  +M ++ +    
Sbjct: 233 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 292

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHER 234
              + ++D   K    + S+  F +  R
Sbjct: 293 IFFNSIIDSHCKEGRVIESVKLFDLMVR 320



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 66/123 (53%)

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           C  D+ +YS +I+G  K G L+     ++ +    +  +VVTY+ +I  L     +DKA 
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAM 67

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           ++   M ++ V P+ +T+ +++HGF    +P + I  L KM+   V PD    + ++D L
Sbjct: 68  EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYL 127

Query: 217 AKN 219
            KN
Sbjct: 128 CKN 130



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 98/207 (47%), Gaps = 23/207 (11%)

Query: 57  MQRDG--VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           M  DG     D  +Y+  I+G  K G + ++   +  +   +   ++  Y+ +I  LCK+
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKA 60

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
             ++ A+E+  ++ +  ++ D +TY+ ++HG  + GQ  +A      M  + V P+V+T+
Sbjct: 61  QTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTY 120

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI----------------VVDLLAK 218
            +L+    +    ++  ++   M ++ + PD +                    ++DL+ +
Sbjct: 121 NSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVR 180

Query: 219 NEISLNSLPSFTV----HERQEEVDES 241
           N I  N    F++    + +QE+V+E+
Sbjct: 181 NGIHPNHY-VFSILVCAYAKQEKVEEA 206



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 73/138 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  Y K +++E A+ ++S+M  +G+ P+ V + T+   L +  +VE A   F++M  +
Sbjct: 192 ILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDE 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+  Y   I  LC      ++ ELF  +      L    ++ +ID  CK GR+  +
Sbjct: 252 GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIES 311

Query: 121 LELFHSLPRGVLVADVVT 138
           ++LF  + R  +  D++T
Sbjct: 312 VKLFDLMVRIGVKPDIIT 329


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 133 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 192

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 193 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLA 252

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 253 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 312

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 313 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 357



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN  ++ A+ +Y  MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 239 LIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 299 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 358

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +  AP+V+T+  L++G
Sbjct: 359 KMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 169 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
           +  +  T+T  IDG CKNG +  ++E+++  R+L   L  D+  Y+ LI GLCK G L+ 
Sbjct: 229 LIPNGVTFTTLIDGRCKNGRVDLAMEIYK--RMLSQSLLPDLITYNTLIYGLCKKGDLKQ 286

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  LI 
Sbjct: 287 AHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 346

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +        ++L +M   ++ PD    +++++   K 
Sbjct: 347 GLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKK 386



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 203 VLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQ 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 263 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 322

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 323 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINE 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+     P     +++++
Sbjct: 383 FCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 416



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 83/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 103 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 162

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 163 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 222

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 223 EMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPD 267



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 119 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 178

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 179 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 238

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 239 LIDGRCKN 246



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G+  +++E +R  R  K  +       +++ L K    ++    
Sbjct: 56  SDIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 115

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 116 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 175

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 176 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 210


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+   ++ A  +  EM  KG  PD V +NTL  G  +     +A  +  EM R+
Sbjct: 289 VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN 348

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+    TYT  I+ +CK   +  ++E F  +RI     + + Y+ LIDG  + G L  A
Sbjct: 349 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 408

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             + + +        VVTY+  IHG     +M++A  +  +M E  +AP+V+++ T+I G
Sbjct: 409 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 468

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  E  +  ++  +M EK V PDA   S ++  L +
Sbjct: 469 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 506



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK      AL +++EM+  G+ P VV +  L   + +   + RA + FD+M+  G
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 384

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + RTYT  IDG  + G + E+  +   +        +  Y+  I G C   R+E AL
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 444

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  DVV+YS +I G    G++D+A  +  +M E  V+P+ +T+ +LI G 
Sbjct: 445 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +   ++  +L  +M +  + PD    + +++
Sbjct: 505 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLIN 537



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 102/205 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C   E++  L  + EM   G  P+VV +NTL     ++ +++ AF L   M   
Sbjct: 219 ILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSK 278

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +Y + I+GLC+ G + E+ E+   +       D   Y+ L++G CK G    A
Sbjct: 279 GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 338

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   + R  +   VVTY+ +I+ +     +++A + F  M    + PN  T+ TLI G
Sbjct: 339 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 398

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F R    ++   +L++M E    P 
Sbjct: 399 FSRQGLLNEAYRILNEMTESGFSPS 423



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 107/204 (52%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  +Y EM+   + P+V  +N L  G   + ++++    F EM+R+G   +  TY   ID
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID 257

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             CK G I E+  L +++     + ++ +Y+ +I+GLC+ G ++ A E+   +       
Sbjct: 258 AYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTP 317

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY+ +++G   +G   +A  +  +M  N V+P+V+T+  LI+   +    ++ +E  
Sbjct: 318 DEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFF 377

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            +M+ + + P+    + ++D  ++
Sbjct: 378 DQMRIRGLRPNERTYTTLIDGFSR 401



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G+C  + +E AL +  EM+ KG+ PDVV ++T+  G     +++RAF++  EM   G
Sbjct: 430 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 489

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY+  I GLC+   + E+ +L + +  +    D   Y+ LI+  C  G L  AL
Sbjct: 490 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKAL 549

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + D VTYS++I+GL    +  +A  L   +      P+ +T+ TLI   
Sbjct: 550 HLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENC 609

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
             I E   V+ L+     K +M +A  V
Sbjct: 610 SNI-EFKSVVALIKGFCMKGLMHEADRV 636



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 108/220 (49%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVER--AFKLFDEMQ 58
           +++  Y     I+ A+N  +   S G  P V+ +N++   +       +  A +++ EM 
Sbjct: 147 LMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMI 206

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R  V+ +  TY I I G C  G + + +  F  +    C  ++  Y+ LID  CK GR++
Sbjct: 207 RSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRID 266

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  L  S+    +  ++++Y+++I+GL  +G M +A ++  +M      P+ +T+ TL+
Sbjct: 267 EAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 326

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +G+ +     + + +  +M    V P     + +++ + K
Sbjct: 327 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 366



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +   +  A  + +EM   G  P VV +N    G   + ++E A  +  EM   G
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  +Y+  I G C+ G +  + ++ + +       D   YS LI GLC+  RL  A 
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 514

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I+    +G ++KA  L  +M      P+ +T+  LI+G 
Sbjct: 515 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGL 574

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +   LL K+  +  +P 
Sbjct: 575 NKQARTREAKRLLFKLIYEESVPS 598



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 50/264 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV-------------- 47
           +I+G+C+  E++ A  +  EM+ KG+ PD V +++L  GL E+ ++              
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 48  ---------------------ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                 +A  L DEM   G   D  TY++ I+GL K     E+ 
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 584

Query: 87  ELFRTL--------------RILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            L   L               I  C  ++ ++   LI G C  G +  A  +F S+    
Sbjct: 585 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 644

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                  Y+++IHG    G + KA +L+ +M  +   P+ +T  TLI    +     ++ 
Sbjct: 645 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMS 704

Query: 192 ELLHKMKEKNVMPDASIVSIVVDL 215
           E++        + +A +  ++V++
Sbjct: 705 EVIGDTLRSCRLNEAELAKVLVEI 728



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 84/219 (38%), Gaps = 50/219 (22%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKL-FDE 56
           LIN YC   ++  AL+L+ EM+ KG  PD V ++ L  GL +  +   A    FKL ++E
Sbjct: 535 LINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEE 594

Query: 57  MQRDGVAADT----------RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
                V  DT          ++    I G C  G + E+  +F ++     +     Y+ 
Sbjct: 595 SVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNV 654

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG---------------- 150
           +I G C+ G L  A  L+  +     V   VT   +I  L+ +G                
Sbjct: 655 IIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSC 714

Query: 151 -------------------QMDKAHDLFLDMEENAVAPN 170
                               M+   ++  DM ++ + PN
Sbjct: 715 RLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPN 753


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 115/220 (52%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G C+ ++++ A  +  EM  +G  PDVV +N+   GL +  +V+ A K    M   
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP-- 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  +YT  I+GLCK+G +  +  +   +    C  D+  YS LIDG CK G +E A
Sbjct: 178 -VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERA 236

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L  S+ +     ++V Y+ ++  L+  G + KA D+ ++ME     P+V+++   I G
Sbjct: 237 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 296

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +     K   +  +M E+   P+AS  S++V+ L K +
Sbjct: 297 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKK 336



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C++ ++E A  L   M   G  PD  I+N L  G  +     +AFK   EM ++
Sbjct: 15  ILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKN 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  TYT  +DGLCK G   ++V+L   +R   C  +I  Y+ +++GLC+  +L+ A
Sbjct: 75  HCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       DVVTY+  I GL    ++D+A      M    V P+V+++ T+I+G
Sbjct: 135 KKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVING 191

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +      +L +M  +   PD    S ++D   K 
Sbjct: 192 LCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 1/202 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  E+E A+ L   ML  G +P++V +N+L   L  +  + +A  +  EM+R G
Sbjct: 223 LIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRG 282

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y   IDGLCK   + ++  +F  +    C  +  +YS L++ LCK   L+ A+
Sbjct: 283 FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAI 342

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIHG 180
            L         + D++ Y++++ GL   G+ D+A  LF   ++E    P+V  +  ++  
Sbjct: 343 TLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDS 402

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
             +  +  K +++  +M E+N 
Sbjct: 403 HCKRRQIDKALQIHKQMLERNC 424



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G CK   ++ A    + M    + PDVV + T+  GL +   ++ A ++ D+M   G
Sbjct: 156 FIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRG 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  IDG CK G +  ++ L  ++  L C  ++ AY+ L+  L + G +  A 
Sbjct: 213 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 272

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + R     DVV+Y+  I GL    ++ KA  +F  M E    PN  ++  L+   
Sbjct: 273 DMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEEL 332

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  E    I L+ + +EK  + D  + ++++D L K 
Sbjct: 333 CKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKG 370



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 33/249 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEM-Q 58
           +L++G CK    + A  L+S++L + I +PDV  +N +     +  Q+++A ++  +M +
Sbjct: 362 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 421

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R+    +  T+ I + GLC +  + ++  +  T+       D   Y  L+D +CK G+  
Sbjct: 422 RN--CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSA 479

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH---------------------- 156
            ALELF    +G  V DVVTYS +I GL ++   ++A+                      
Sbjct: 480 AALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENG 539

Query: 157 ------DLFLDMEENAVAPNVITFGTLIHG-FIRINEPSKVIELLHKMKEKNVMPDASIV 209
                  LF+++ E+ V PN  TFG  I G  ++     K   L  +  +    PD  + 
Sbjct: 540 SGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVA 599

Query: 210 SIVVDLLAK 218
           + ++D+ AK
Sbjct: 600 NTLIDVFAK 608



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 104/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK+ +++ A  +  +M ++G  PDVV +++L  G  +  +VERA  L D M + G
Sbjct: 188 VINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 247

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   +  L + G+I ++ ++   +       D+ +Y+  IDGLCK+ R++ A 
Sbjct: 248 CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAK 307

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       +  +YS+++  L    ++D A  L     E     +++ +  L+ G 
Sbjct: 308 AVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGL 367

Query: 182 IRINEPSKVIELLHK-MKEKNVMPDASIVSIVVD 214
            +     +   L  K + EK   PD    ++++D
Sbjct: 368 CKGGRFDEACALFSKVLDEKICEPDVFFYNVMLD 401



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%)

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D  T+ I + GLC++  + ++ +L   ++ + C  D   Y+ LI G  K+     A +  
Sbjct: 9   DAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFL 68

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             + +   +  VVTY+ ++ GL   G+   A  L  +M +   +PN+ T+  ++ G    
Sbjct: 69  AEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEE 128

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  ++L +M  +   PD    +  +  L K
Sbjct: 129 RKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK 162



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 59/122 (48%)

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           C+ D   ++ L+ GLC+S +LE A +L   +     V D   Y+ +I G        +A 
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
               +M +N   P V+T+  ++ G  +       ++LL +M++K   P+    +++V+ L
Sbjct: 66  KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 217 AK 218
            +
Sbjct: 126 CE 127



 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M + +  P+  TF  L+ G  R N+  K  +LL +MKE   +PD +I + ++   +K
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSK 57


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 118/217 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+ + +  A+++  +M   G  P+ + +N L  G  +  +++RA +  + M   
Sbjct: 353 ILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 412

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G +  +VE+   L    C   +  Y+ +IDGL K G+ E A
Sbjct: 413 GCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA 472

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   + R  L  D++TYS ++ GL  +G++D+A  +F DME  ++ P+ +T+  ++ G
Sbjct: 473 VELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 532

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  + S+ I+ L  M EK   P  +  +I+++ +A
Sbjct: 533 LCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIA 569



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI GYCK+ EI+ AL +   M    + PDVV +NT+   L +  +++ A ++ D   + 
Sbjct: 181 VLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQR 237

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYTI I+  C +  + ++++L   +R   C+ D+  Y+ LI+G+CK GRL+ A
Sbjct: 238 ECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEA 297

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  +++P      +V+T++I++  + + G+   A  L  DM     +P+V+TF  LI+ 
Sbjct: 298 IKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINF 357

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R     + I++L KM +   +P++
Sbjct: 358 LCRKRLLGRAIDVLEKMPKHGCVPNS 383



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A+   + M S G KP+V+ HN +   +    +   A +L  +M R 
Sbjct: 283 VLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRK 342

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+   +  ++++   +    C  +  +Y+ L+ G C+  +++ A
Sbjct: 343 GCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRA 402

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ ++  L  DG++D A ++   +     +P +IT+ T+I G
Sbjct: 403 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDG 462

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +    +ELL +M+ K + PD    S ++  L +
Sbjct: 463 LTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGR 500



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C +  +  A+ L  EM  KG KPDVV +N L  G+ +  +++ A K  + M   
Sbjct: 248 ILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 307

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+ I +  +C  G  +++  L   +    C   +  ++ LI+ LC+   L  A
Sbjct: 308 GCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRA 367

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   +P+   V + ++Y+ ++HG   + +MD+A +    M      P+++T+ TL+  
Sbjct: 368 IDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 427

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +    +E+L+++  K   P     + V+D L K
Sbjct: 428 LCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTK 465



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 3/198 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N E+E  L     M+ +G  PDV+   +L  G     + ++A ++ + ++  G   D  
Sbjct: 118 RNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVI 177

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G CK+G I +++E+   + +     D+  Y+ ++  LC SG+L+ A+E+    
Sbjct: 178 TYNVLIGGYCKSGEIDKALEVLERMSVAP---DVVTYNTILRSLCDSGKLKEAMEVLDRQ 234

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+I+I    ND  + +A  L  +M +    P+V+T+  LI+G  +    
Sbjct: 235 LQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 294

Query: 188 SKVIELLHKMKEKNVMPD 205
            + I+ L+ M      P+
Sbjct: 295 DEAIKFLNNMPSYGCKPN 312



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C++ + + A  +   + + G  PDV+ +N L  G  +  ++++A ++ + M    
Sbjct: 147 LIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMS--- 203

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TY   +  LC +G + E++E+       +C  D+  Y+ LI+  C    +  A+
Sbjct: 204 VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAM 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +     DVVTY+++I+G+  +G++D+A     +M      PNVIT   ++   
Sbjct: 264 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSM 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                      LL  M  K   P     +I+++ L +  +
Sbjct: 324 CSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRL 363



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L ++G LE  L+    +     + DV+  + +I G    G+  KA  +   +E +   P+
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           VIT+  LI G+ +  E  K +E+L +M   +V PD
Sbjct: 176 VITYNVLIGGYCKSGEIDKALEVLERM---SVAPD 207


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 108/204 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+CK   I  A+ L  EM +  + PDVV +NTL  G FE    E  FKL +EM+  
Sbjct: 307 VMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGR 366

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++ TY + +    K G + E  +  R +    C  DI  Y+ LI   CK G+++ A
Sbjct: 367 GMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEA 426

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  L  D VT + M+  L  + ++D+AHDL           + +++GTLI G
Sbjct: 427 FRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIG 486

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           + +  + S+ + L  +MKEK ++P
Sbjct: 487 YFKHEKASQALRLWDEMKEKEIIP 510



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C       A+ +  +M   G  PD + +NT+  GL +  ++  A  L  +M+  
Sbjct: 202 ILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNK 261

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ I + G C+ G++ E+  +   +       D   Y+ +I G CK GR+  A
Sbjct: 262 GLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEA 321

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    L  DVVTY+ +I+G +  G  ++   L  +ME   + PN +T+  ++  
Sbjct: 322 MRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKW 381

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F++  +  +V + + KM+E   +PD    + ++    K
Sbjct: 382 FVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCK 419



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK   +  A +L  +M +KG+ P+    N L +G   +  ++ A  + + M ++ 
Sbjct: 238 ILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNS 297

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY + I G CK G I E++ L   +  LK   D+  Y+ LI+G  + G  E   
Sbjct: 298 VVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGF 357

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  + VTY++M+      G+MD+       MEE+   P+++T+ TLI   
Sbjct: 358 KLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWH 417

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++ +  +   L+ +M  K +  D   ++ ++  L +
Sbjct: 418 CKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCR 454



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  + K  +++       +M   G  PD+V +NTL     ++ +++ AF+L DEM R 
Sbjct: 377 VMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRK 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T    +  LC+   + E+ +L  + R     +D  +Y  LI G  K  +   A
Sbjct: 437 GLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQA 496

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L+  +    ++  ++TY+ MI GL   G+ ++A D   ++ E+ + P+ IT+ T+IHG
Sbjct: 497 LRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHG 556

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +  K  +  +KM EKN  PD    + ++  L K
Sbjct: 557 YCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCK 594



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 100/199 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY K+++   AL L+ EM  K I P ++ +N++  GL ++ +  +A    DE+   G
Sbjct: 483 LIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESG 542

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G C+ G + ++ +    +     + D+   + L+ GLCK G LE AL
Sbjct: 543 LVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKAL 602

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF++        D V+Y+ +I  L  + +  +A DL  +MEE  + P+  T+  ++ G 
Sbjct: 603 KLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGL 662

Query: 182 IRINEPSKVIELLHKMKEK 200
                     E + K+ EK
Sbjct: 663 TDAGRMKDAEEFISKIAEK 681



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 3/217 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI---HQVERAFKLFDEM 57
           I I  Y        A  +++ M   G++P ++  NTL   L      H +  +  +F + 
Sbjct: 129 ISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDF 188

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            + GV  +T ++ I I G C      E++ +   +R   C  D   Y+ ++DGLCK GRL
Sbjct: 189 IKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRL 248

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +L   +    L  +  T++I++ G    G + +A ++   M +N+V P+  T+  +
Sbjct: 249 NEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVM 308

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           I GF +    ++ + L  +M+   + PD    + +++
Sbjct: 309 ISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLIN 345



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK  +++ A  L  EM  KG+K D V  NT+   L    +++ A  L    +R G
Sbjct: 413 LISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRG 472

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y   I G  K+    +++ L+  ++  +    I  Y+ +I GLC+ G+   A+
Sbjct: 473 YFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAI 532

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    L    LV D +TY+ +IHG   +GQ++KA      M E    P+V+T  TL+ G 
Sbjct: 533 DKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGL 592

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     K ++L +    K    DA   + ++  L K
Sbjct: 593 CKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCK 629



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 102/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++   C+ ++++ A +L      +G   D V + TL IG F+  +  +A +L+DEM+   
Sbjct: 448 MLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKE 507

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I GLC+ G   ++++    L       D   Y+ +I G C+ G++E A 
Sbjct: 508 IIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAF 567

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +  + +       DVVT + ++ GL  +G ++KA  LF          + +++ T+I   
Sbjct: 568 QFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSL 627

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     +  +LL +M+EK + PD    + ++
Sbjct: 628 CKEKRFGEAFDLLEEMEEKKLGPDCYTYNAIL 659



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+  +   A++   E+L  G+ PD + +NT+  G  +  QVE+AF+  ++M    
Sbjct: 518 MIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKN 577

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T    + GLCK G + ++++LF T      ++D  +Y+ +I  LCK  R   A 
Sbjct: 578 FKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAF 637

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +L   +    L  D  TY+ ++ GL + G+M  A +    + E   + N
Sbjct: 638 DLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSEN 686


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G CK    E  L L   M S+    P+ V +N L  G  +   +E A +LFD+M +D
Sbjct: 386 LIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T    +DG+CK+G I  +VE F  ++    + +   Y+ LI   C    +E A
Sbjct: 446 GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKA 505

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +ELF  +       D + Y  +I GL   G++D+A  +   M+E   +P++++F  LI+G
Sbjct: 506 MELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLING 565

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R N+  +  E+L +M+   + PD    + ++   +K
Sbjct: 566 FCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 111/203 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   IE A  L+ +M   G+ P+VV  NTL  G+ +  ++  A + F+EMQ  G
Sbjct: 422 LIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKG 481

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I   C    I +++ELF  +    C  D   Y  LI GL ++G+L+ A 
Sbjct: 482 LKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRAS 541

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       D+V+++++I+G     ++D+A+++  +ME   + P+ +T+ TLI  F
Sbjct: 542 FVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHF 601

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +  + S    L+ KM ++ ++P
Sbjct: 602 SKTGDFSTAHRLMKKMVKEGLVP 624



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 2/224 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK+  I GA+  ++EM  KG+K + V +  L      ++ +E+A +LFDEM   G
Sbjct: 457 LVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAG 516

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D   Y   I GL + G +  +  +   ++      DI +++ LI+G C+  +L+ A 
Sbjct: 517 CSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAY 576

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  D VTY+ +I      G    AH L   M +  + P V+T+G LIH +
Sbjct: 577 EMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAY 636

Query: 182 IRINEPSKVIELLHKMKEKN-VMPDASIVSIVVD-LLAKNEISL 223
                  + +++   M   + V P+  I +I+++ L  KN++ L
Sbjct: 637 CLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDL 680



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 36/252 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +C    IE A+ L+ EML  G  PD +++ TL  GL +  +++RA  +  +M+  G
Sbjct: 492 LIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAG 551

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  ++ + I+G C+   + E+ E+ + +     + D   Y+ LI    K+G    A 
Sbjct: 552 FSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAH 611

Query: 122 ELFHSLPRGVLVADVVTY------------------------------------SIMIHG 145
            L   + +  LV  VVTY                                    +I+I+ 
Sbjct: 612 RLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINS 671

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    Q+D A  L  DM+   V PN  TF  +  G    N  SK  EL+ +M E    PD
Sbjct: 672 LCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPD 731

Query: 206 ASIVSIVVDLLA 217
              + I+ + L+
Sbjct: 732 YITMEILTEWLS 743



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+C+  +++ A  +  EM + GIKPD V +NTL     +      A +L  +M ++
Sbjct: 561 VLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKE 620

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+     TY   I   C NG + E++++FR +    K   +   Y+ LI+ LC+  ++++
Sbjct: 621 GLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDL 680

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL L   +    +  +  T++ M  GL     + KA +L   M E+A  P+ IT   L  
Sbjct: 681 ALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTE 740

Query: 180 GFIRINEPSKV 190
               + E +K+
Sbjct: 741 WLSAVGETAKL 751



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C++   + A ++   ++  G   +    N L   L    + +R   L  EM+   
Sbjct: 276 LISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMD 335

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-----ELDIQAYSCLIDGLCKSGR 116
           +  +  T+ I I+ LCK   + E++E+F  +   +      E D+  Y+ LIDGLCK GR
Sbjct: 336 IQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGR 395

Query: 117 LEIAL---ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            E  L   E   S PR   + + VTY+ +I G      ++ A +LF  M ++ V PNV+T
Sbjct: 396 QEEGLGLVERMRSQPR--CMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVT 453

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             TL+ G  +    +  +E  ++M+ K +  +A   + ++
Sbjct: 454 LNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALI 493



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E  + L S+     + P+ +    L   L    + +RA+ +   + + G   +  +    
Sbjct: 252 EEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNAL 311

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL----P 128
           +  L +         L   ++ +  + ++  +  LI+ LCK  R++ ALE+F  +     
Sbjct: 312 LTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGES 371

Query: 129 RGVLV-ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIHGFIRINE 186
            G LV  DV+TY+ +I GL   G+ ++   L   M       PN +T+  LI G+ + + 
Sbjct: 372 NGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASM 431

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                EL  +M +  V P+   ++ +VD + K
Sbjct: 432 IEAARELFDQMNKDGVPPNVVTLNTLVDGMCK 463



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 13/199 (6%)

Query: 33  IHNTLFIGLFEIHQVERAFKLFDEM--QRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
           I N L   LF   +V+ A  L DEM   +     ++ T  I    L K   +  +V+   
Sbjct: 194 IRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEE 253

Query: 91  TLRILKCELDIQAY------SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
            + ++    + + +      + LI  LC+SGR + A ++ H L +   V +  + + ++ 
Sbjct: 254 IVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLT 313

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK--EKN- 201
            L    +  + + L  +M+E  + PNV+TFG LI+   +     + +E+  KM   E N 
Sbjct: 314 ALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNG 373

Query: 202 --VMPDASIVSIVVDLLAK 218
             V PD    + ++D L K
Sbjct: 374 FLVEPDVITYNTLIDGLCK 392


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           LI  Y +    + ++ L+  M   G+ P VV  N++ + L +  +   A +++DEM +  
Sbjct: 161 LIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTY 220

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  DT TY I I G CKN  + E    F+ +    C+ D+  Y+ L+DGLC++G++++A
Sbjct: 221 GVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVA 280

Query: 121 LELFHSLPRGV--LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             L + + +    L  DVVTY+ +I G     ++D+A D+  +M    + PN++T+ TLI
Sbjct: 281 HNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLI 340

Query: 179 HGFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVD 214
            G     +  K+ E+L +MK +   +PDA   + +++
Sbjct: 341 KGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLIN 377



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 46/259 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVER------------ 49
           LI GYC+ +E++ AL++  EM  +G+KP++V +NTL  GL E  + ++            
Sbjct: 304 LIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDG 363

Query: 50  ------------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                   AFK+F+ M++  V+AD+ +Y++ I  LC+ G   ++
Sbjct: 364 GSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKA 423

Query: 86  VELFRTL---RILKCELDIQ----AYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVV 137
             LF  L    IL      +    +Y C+   LC++G+ + A  +   L  RG    D +
Sbjct: 424 EMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGT--QDPL 481

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           +Y I+I G   +G  +  + L + M      P++  +  LI GF+R ++P    E L KM
Sbjct: 482 SYQIVILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKM 541

Query: 198 KEKNVMPDASIVSIVVDLL 216
            + +  P  S    +++ L
Sbjct: 542 LKSSYKPQTSTWHSILNRL 560



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR- 59
           ILI G+CKN  ++     + EM S    PDVV +NTL  GL    +++ A  L + M + 
Sbjct: 231 ILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKK 290

Query: 60  -DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
              ++ D  TYT  I G C+   + E++++   +     + +I  Y+ LI GLC++ + +
Sbjct: 291 CKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWD 350

Query: 119 IALELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              E+   +   G  + D  T++ +I+     G +D+A  +F +M++  V+ +  ++  L
Sbjct: 351 KMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVL 410

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVM 203
           I    +  +  K   L  ++ EK ++
Sbjct: 411 IRTLCQKGDYGKAEMLFDELFEKEIL 436



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 39/198 (19%)

Query: 47  VERAFKLFDEMQRDG-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL---------- 95
           + R F    E + +G V  + R +   I    + G   ESV+LF  ++++          
Sbjct: 135 IARNFLYSIEKRSNGEVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFN 194

Query: 96  --------------------------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
                                       + D   Y+ LI G CK+  ++     F  +  
Sbjct: 195 SVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTS 254

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA--VAPNVITFGTLIHGFIRINEP 187
                DVVTY+ ++ GL   G++  AH+L   M +    ++P+V+T+ TLI G+ R  E 
Sbjct: 255 FDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEV 314

Query: 188 SKVIELLHKMKEKNVMPD 205
            + +++L +M  + + P+
Sbjct: 315 DEALDILEEMNGRGLKPN 332



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 41/219 (18%)

Query: 36  TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID--GLCKN-------------- 79
           T+F  L  I    +AF  F+ +   G + + +TY I ++  G  KN              
Sbjct: 87  TVFQTLRHIKVPTKAFLFFNWIHEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKR 146

Query: 80  ----------------------GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
                                 G   ESV+LF  ++++     +  ++ ++  L K GR 
Sbjct: 147 SNGEVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRT 206

Query: 118 EIALELFHSLPRGVLV-ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            +A E++  + +   V  D  TY+I+I G   +  +D+    F +M      P+V+T+ T
Sbjct: 207 NMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNT 266

Query: 177 LIHGFIRINEPSKVIELLHKM--KEKNVMPDASIVSIVV 213
           L+ G  R  +      L++ M  K K++ PD    + ++
Sbjct: 267 LVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLI 305


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   +E A++L  +++  G  PDVV + +L  GL +  +   A+KLF EM   G
Sbjct: 27  LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 86

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT  YT  I  L + G I ++  +++T+    C  D+   S +IDGL K+GR+  A+
Sbjct: 87  LALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAV 146

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F S+    L  + V YS +IHGL    +MD A ++   M++    P+ IT+  LI G 
Sbjct: 147 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGL 206

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +         +M E    PD    +I++    K
Sbjct: 207 CKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 243



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   KNK+IE A+ L  ++ + G  P +  +N L  GL ++ ++E A  L  ++  +G
Sbjct: 273 IVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 332

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  IDGL K     E+ +LF+ + +    LD   Y+ LI  L ++G++  A 
Sbjct: 333 CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQAS 392

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++ ++     V DVVT S MI GL   G++  A  +F  ME   +APN + +  LIHG 
Sbjct: 393 SVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 452

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +    +E+L +MK+    PD    +I++D L K+
Sbjct: 453 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 490



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   +E A++L  +++  G  PDVV + +L  GL +  +   A+KLF EM   G
Sbjct: 308 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A DT  YT  I  L + G I ++  +++T+    C  D+   S +IDGL K+GR+  A+
Sbjct: 368 LALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAV 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F S+    L  + V YS +IHGL    +MD A ++   M++    P+ IT+  LI G 
Sbjct: 428 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +         +M E    PD    +I++    K
Sbjct: 488 CKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 524



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA-FKLFDEMQR 59
           +LI+G CK+ ++E A   + EML  G KPDV  +N L  G  +    + A   L  E   
Sbjct: 201 VLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTI 260

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G   D  TYT  +D L KN  I E+V L   +    C   I  Y+ L++GLCK GRLE 
Sbjct: 261 NGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 320

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A++L   +       DVVTY+ +I GL  + +  +A+ LF +M    +A + + +  LI 
Sbjct: 321 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIR 380

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++  +  +   +   M     +PD   +S ++D L+K
Sbjct: 381 ELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 419



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 110/209 (52%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +IE A+ L  ++ + G  P +  +N L  GL ++ ++E A  L  ++  +G   D  TYT
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             IDGL K     E+ +LF+ + +    LD   Y+ LI  L ++G++  A  ++ ++   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
             V DVVT S MI GL   G++  A  +F  ME   +APN + +  LIHG  +  +    
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +E+L +MK+    PD    ++++D L K+
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKS 209



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 99/194 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  +I  A ++Y  M S G  PDVV  +T+  GL +  ++  A ++F  M+  G+A +  
Sbjct: 384 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 443

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y+  I GLCK   +  ++E+   ++   C  D   Y+ LIDGLCKSG +E A   F  +
Sbjct: 444 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 503

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV TY+I+I G    G  D A  +F DM  +  + NV+T+G LI G  +  + 
Sbjct: 504 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQL 563

Query: 188 SKVIELLHKMKEKN 201
           +K       MKE+ 
Sbjct: 564 TKASLYFQHMKERG 577



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 113/258 (43%), Gaps = 36/258 (13%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  +I  A ++Y  M S G  PDVV  +T+  GL +  ++  A ++F  M+  G+A +  
Sbjct: 103 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 162

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y+  I GLCK   +  ++E+   ++   C  D   Y+ LIDGLCKSG +E A   F  +
Sbjct: 163 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEM 222

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKA-HDLFLD------------------------- 161
                  DV TY+I+I G    G  D A H L  +                         
Sbjct: 223 LEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKK 282

Query: 162 -------MEE---NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
                  ME+   N   P + T+  L++G  ++    + I+LL K+ +    PD    + 
Sbjct: 283 IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 342

Query: 212 VVDLLAKNEISLNSLPSF 229
           ++D L K + S  +   F
Sbjct: 343 LIDGLGKEKRSFEAYKLF 360



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK+ ++E A   + EML  G KPDV  +N L  G  +    + A  +FD+M   
Sbjct: 482 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSS 541

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
             +A+  TY   I GLCK   + ++   F+ ++
Sbjct: 542 RCSANVVTYGALISGLCKRRQLTKASLYFQHMK 574



 Score = 40.0 bits (92), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK    + A  ++ +M S     +VV +  L  GL +  Q+ +A   F  M+  
Sbjct: 517 ILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKER 576

Query: 61  G 61
           G
Sbjct: 577 G 577


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 114/205 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G   +  +++ F+L   M   
Sbjct: 141 ILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T T+ I+GLCK   + E+ ELF  +       +   ++ LIDG CKSGR+++A
Sbjct: 201 GVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE++  + R     D++TY+ +I+GL   G + +A DL ++M    + P+ IT+ TLI G
Sbjct: 261 LEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     EL  +M E+++  D
Sbjct: 321 SCKEGDLETAFELRKRMIEESIRLD 345



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 107/204 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L++EML KG+ P+ V   TL  G  +  +V+ A +++ +M R 
Sbjct: 211 VLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY   I GLC+ G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 GYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    +  D V Y+ +I GL  +G+   A  +  +M    + P   T+  +I+G
Sbjct: 331 FELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIING 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKQGDVKTASKLLKEMQRDGHVP 414



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 93/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK+  ++ AL +Y +ML +G  PD++ +NTL  GL     +++A  L  EM   G
Sbjct: 247 LIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + EL + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  +  TY+++I+G    G +  A  L  +M+ +   P V+T
Sbjct: 367 KMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY +  +++    L + M + G+ PDV  +  L  GL +  +++ A +LF+EM   G
Sbjct: 177 LINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK+G +  ++E+++ +       D+  Y+ LI GLC+ G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQAR 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +L   M E ++  + + +  LI G 
Sbjct: 297 DLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQ 394



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL- 99
           L ++   +  +  + E+   G       + I +   CK G I  +  +F    I KC L 
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDA--ITKCGLR 168

Query: 100 -DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
             + +++ LI+G  + G L+    L  ++    +  DV T +++I+GL  + +MD+A++L
Sbjct: 169 PSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANEL 228

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           F +M +  + PN +TF TLI G  +       +E+  +M  +   PD
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPD 275



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E FR  R  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +        +  ++I++H    +G++  A  +F  + +  + P+V++F TLI+G+IR
Sbjct: 124 YKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  K   L   M    V PD    +++++ L K
Sbjct: 184 LGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCK 218


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P  V +NTL  G   +  ++  F+L   M   
Sbjct: 122 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLAS 181

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 182 GVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 241

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  DM    + P+ IT+ TLI G
Sbjct: 242 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDG 301

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +        E   ++ ++N+  D  + + ++  L +   S+++
Sbjct: 302 CCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDA 346



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 101/179 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L D+M R G
Sbjct: 228 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +V + E  + L      LD   Y+ LI GLC+ GR   A 
Sbjct: 288 LKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAE 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 348 KMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +   ++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 158 LMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 218 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 277

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  L  D +TY+ +I G   +G +  A +    + +  +  + + +  LI G 
Sbjct: 278 DLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGL 337

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 338 CQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKK 375



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 192 VLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   +     + D   Y+ LIDG CK G L  A
Sbjct: 252 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    L +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 312 FEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINE 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 372 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 405



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 92  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 151

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
             +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A +LF 
Sbjct: 152 AVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFD 211

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 212 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 256



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/155 (18%), Positives = 71/155 (45%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +   R  K  +       +++ L K    ++    
Sbjct: 45  SDIYVFSGLITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYFKLVWGF 104

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+ +++ TL++G+IR
Sbjct: 105 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIR 164

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    +   L   M    V PD    S++++ L K
Sbjct: 165 LGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 199


>gi|147742769|gb|ABQ50550.1| hypothetical protein [Brassica rapa]
          Length = 281

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK K +   + L+ E+  +G+  + V ++TL  G  E  ++  A +LF EM   G
Sbjct: 51  LINGYCKAKRVVDGMKLFREISLRGLVANTVTYSTLIQGFCEAGKLNVAKELFQEMVSRG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+    TY I +DGLC NG + E++E+   ++  K  +DI  Y+ +I G+C + R++ A 
Sbjct: 111 VSPSVVTYGILLDGLCDNGELEEALEILEKMQKCKMGIDIGIYNIIIHGMCNARRVDDAW 170

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
           ELF SL P   +  DV TY++MI GL   G + +A  LF  M EE+  AP+  T+ TLI 
Sbjct: 171 ELFSSLLPLKGVKPDVKTYNVMIGGLCKKGSLSEADKLFKKMGEEDETAPSECTYNTLIR 230

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +  +  +  +EL+ +MK      DAS + +V+D+LA   ++
Sbjct: 231 AHLGGSGVATSVELIEEMKRCGFSADASTMKMVIDMLADGRLN 273



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 3/199 (1%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+ +GI PD + + +L  GL   ++++ A ++ D M   G      TY   I+G CK   
Sbjct: 1   MVPRGIDPDTITYTSLIYGLCMENRLDEANQMMDLMVSKGCEPSIVTYGTLINGYCKAKR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYS 140
           +V+ ++LFR + +     +   YS LI G C++G+L +A ELF  +  RGV    VVTY 
Sbjct: 61  VVDGMKLFREISLRGLVANTVTYSTLIQGFCEAGKLNVAKELFQEMVSRGV-SPSVVTYG 119

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE- 199
           I++ GL ++G++++A ++   M++  +  ++  +  +IHG           EL   +   
Sbjct: 120 ILLDGLCDNGELEEALEILEKMQKCKMGIDIGIYNIIIHGMCNARRVDDAWELFSSLLPL 179

Query: 200 KNVMPDASIVSIVVDLLAK 218
           K V PD    ++++  L K
Sbjct: 180 KGVKPDVKTYNVMIGGLCK 198



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D   Y+ LI GLC   RL+ A ++   +        +VTY  +I+G     ++     LF
Sbjct: 9   DTITYTSLIYGLCMENRLDEANQMMDLMVSKGCEPSIVTYGTLINGYCKAKRVVDGMKLF 68

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  N +T+ TLI GF    + +   EL  +M  + V P      I++D L  N
Sbjct: 69  REISLRGLVANTVTYSTLIQGFCEAGKLNVAKELFQEMVSRGVSPSVVTYGILLDGLCDN 128



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 14/168 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQR 59
           IL++G C N E+E AL +  +M    +  D+ I+N +  G+    +V+ A++LF   +  
Sbjct: 120 ILLDGLCDNGELEEALEILEKMQKCKMGIDIGIYNIIIHGMCNARRVDDAWELFSSLLPL 179

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA-----YSCLIDGLCKS 114
            GV  D +TY + I GLCK G + E+ +LF+ +     E D  A     Y+ LI      
Sbjct: 180 KGVKPDVKTYNVMIGGLCKKGSLSEADKLFKKMG----EEDETAPSECTYNTLIRAHLGG 235

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             +  ++EL   + R    AD  T  ++I  +  DG+++K    FLDM
Sbjct: 236 SGVATSVELIEEMKRCGFSADASTMKMVID-MLADGRLNKR---FLDM 279


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 38/268 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+ K +  A+ L S+ML   + P VV +N+L  G  +I  ++ A++L + M  +G
Sbjct: 185 LICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENG 244

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------------------- 92
           V  D  TY++FID LCK G I E+  LF +L                             
Sbjct: 245 VVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDAN 304

Query: 93  ----RILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
               R+L   C  +   Y+ LIDGLCK  +++ AL L  S+ +  L   V TY+I+I  +
Sbjct: 305 SLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAM 364

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G  D AH +   M  +   P+V  +   IH F       +  +++  M E+ VMPDA
Sbjct: 365 LKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDA 424

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHER 234
              ++V+D  A   + L + P+F V +R
Sbjct: 425 LTYTLVID--AYGGLGLLN-PAFDVLKR 449



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 2   LINGYCK---------NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK 52
           ++NGYCK         N ++  A ++++ M  KG + + V +  L  GL E+ +V+    
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +F +M+ D      RTYT+ +  L ++G  +E++ LF  +R   CE +I  Y+ +I+ +C
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K  +LE    +   +    LV  V TY+ +I G   +G ++ A ++   M  N+  PN  
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNER 180

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           T+  LI GF R     + + LL KM E  + P
Sbjct: 181 TYNELICGFCRKKNVHRAMALLSKMLESRLTP 212



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN  CK  ++E    +  EM+ KG+ P V  +N L  G  +   VE A ++ D M  +
Sbjct: 114 VMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSN 173

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + RTY   I G C+   +  ++ L   +   +    +  Y+ LI G CK G L+ A
Sbjct: 174 SCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSA 233

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    +V D  TYS+ I  L   G++++A+ LF  ++E  +  N + +  LI G
Sbjct: 234 YRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDG 293

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +      LL +M  ++ +P++S  + ++D L K
Sbjct: 294 YCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCK 331



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+NL+SEM  +G +P++  +  +   + +  ++E   ++ DEM   G+     TY   ID
Sbjct: 93  AINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALID 152

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK G +  + E+   +    C  + + Y+ LI G C+   +  A+ L   +    L  
Sbjct: 153 GYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTP 212

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            VVTY+ +IHG    G +D A+ L   M EN V P+  T+   I    +     +   L 
Sbjct: 213 SVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLF 272

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
           + +KEK +  +  I + ++D   K
Sbjct: 273 NSLKEKGIKANEVIYTALIDGYCK 296



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 96/217 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +E A  +   M S    P+   +N L  G      V RA  L  +M    
Sbjct: 150 LIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESR 209

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I G CK GY+  +  L   +       D   YS  ID LCK GR+E A 
Sbjct: 210 LTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEAN 269

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+SL    + A+ V Y+ +I G    G+MD A+ L   M      PN  T+  LI G 
Sbjct: 270 VLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGL 329

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  + + L+  M +K +       +I++  + K
Sbjct: 330 CKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLK 366



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 4/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+  CK   IE A  L++ +  KGIK + VI+  L  G  +  +++ A  L D M  +
Sbjct: 254 VFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTE 313

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRLE 118
               ++ TY   IDGLCK   + E++ L  ++  + LKC   +  Y+ LI  + K G  +
Sbjct: 314 DCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCT--VPTYTILIVAMLKEGDFD 371

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +       DV  Y+  IH     G + +A D+   M E  V P+ +T+  +I
Sbjct: 372 YAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVI 431

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +  +   +   ++L +M +    P     S ++  L K E++
Sbjct: 432 DAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELT 475



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 72  FIDGLCKNGYIVES---------VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
            ++G CK G +VE+           +F  +    C  +  +Y+ LI GLC+ GR++  + 
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +F  +        V TY++++H L+  G+  +A +LF +M E    PN+ T+  +I+   
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +  +   +L +M EK ++P     + ++D   K
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCK 156



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  + E AL L+ +ML  G  P++  +  L IGL ++ ++  A KLFD M   GV+    
Sbjct: 500 KMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEA 559

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y   ++  C+ G   ++V L   +        +++ + L  GL + G  E A  +F +L
Sbjct: 560 IYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNL 619

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +     D V + I+I GL  +G  D   +L   ME      +  T+  LI G 
Sbjct: 620 LQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 31/251 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+ +C    I+ A ++ S M  +G+ PD + +  +      +  +  AF +   M   G
Sbjct: 395 FIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTG 454

Query: 62  VAADTRTYTIFIDGLCK--------NGYIVESV---------------------ELFRTL 92
                 TY+  I  L K        N  + +S+                     ELF  +
Sbjct: 455 CDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKM 514

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELF-HSLPRGVLVADVVTYSIMIHGLYNDGQ 151
               C  +I  Y+ LI GLCK GRL +A +LF H   RGV  ++ + Y+ +++     G 
Sbjct: 515 LEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAI-YNSLLNCCCELGI 573

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
              A  L   M E+   P + +   L  G        K   +   + +     D     I
Sbjct: 574 YGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKI 633

Query: 212 VVDLLAKNEIS 222
           ++D L KN +S
Sbjct: 634 LIDGLLKNGLS 644



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  C+      A+ L   M+  G  P +   N LF GL+E    E+A  +F  + + G
Sbjct: 564 LLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCG 623

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
              D   + I IDGL KNG      EL   +    C++  Q Y  LI+GL
Sbjct: 624 YNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 2/223 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK      AL L+ EML +GI P+V  H  L   +    Q++ A  L + M+  
Sbjct: 214 VLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDK 273

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEI 119
           G   D  TY  F+ GLCK G + E++E    LR      L ++ YSCLIDGL  +GR E 
Sbjct: 274 GCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEE 333

Query: 120 ALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             + +   L +     D+V Y+IMI G    G++D A   F +M+E    P+   + TL+
Sbjct: 334 GFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLL 393

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                  +      L+ +M + NV+ D +  +I++  L K ++
Sbjct: 394 KALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQL 436



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 2/193 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL LY+ M++ G  P+   +N L  GL +      A KLFDEM + G+  + +T+TI + 
Sbjct: 193 ALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLS 252

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR-GVLV 133
            +C  G + E+  L  ++    C  D   Y+  + GLCK+GR++ A+E   +L R G  V
Sbjct: 253 SMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFV 312

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIHGFIRINEPSKVIE 192
             +  YS +I GL+  G+ ++    ++++ E A  +P+++ +  +I G            
Sbjct: 313 LGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFA 372

Query: 193 LLHKMKEKNVMPD 205
              +MKEK   PD
Sbjct: 373 FFDEMKEKRFTPD 385



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 13/231 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G  +   I+ A   + EM  K   PD   +NTL   L +   ++ A  L  EM ++
Sbjct: 356 IMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQN 415

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  DT T+TI I GLCK   + E++++F  +  + C   +  Y+ LIDGL ++ RLE A
Sbjct: 416 NVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEA 475

Query: 121 LELFHSLPRG-------------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LF+ +  G               V D  +   ++  +   GQ+ KA+ L   + ++ V
Sbjct: 476 RMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGV 535

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            P+V+T+ TL++G  ++      + L  +++ K    D      ++D L +
Sbjct: 536 VPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLR 586



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 15/225 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-- 58
           I+I+G CK + ++ A+ ++  M+  G  P V+ +N L  GL+  H++E A  LF +M+  
Sbjct: 426 IMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVG 485

Query: 59  -------RDGVAA----DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
                  R  + A    D+ +    +D +C++G ++++ +L R +       D+  Y+ L
Sbjct: 486 NNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTL 545

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           ++GLCK   L+ AL LF  L       D +TY  +I  L    + + A  LF D+     
Sbjct: 546 LNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGG 605

Query: 168 APNVITFGTLIHGFIRINEPSKVIELL--HKMKEKNVMPDASIVS 210
            P++  + +++    R+N+ S+ I     H +K+ N+     +++
Sbjct: 606 TPSLSIYNSIMRSLCRMNKLSQAINFWFDHLLKKYNLSAQDEVIA 650



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  C++ ++  A  L   ++  G+ PDVV +NTL  GL ++  ++ A +LF E+Q  G
Sbjct: 510 LVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKG 569

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY   ID L +     +++ LF+ +  +     +  Y+ ++  LC+  +L  A+
Sbjct: 570 FSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAI 629

Query: 122 ELF--HSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             +  H L +  L A D V  S      + +G +D+A    + +++   + N   +   +
Sbjct: 630 NFWFDHLLKKYNLSAQDEVIAS--ARKKFEEGSLDEAVRELIKIDQEYGSVNSCPYTIWL 687

Query: 179 HGFIRINEPSKVIELLHKMKEKNV 202
            G I+       +++ H ++E  +
Sbjct: 688 IGLIQARRIDDALKIFHILEESGI 711



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 2/178 (1%)

Query: 24  SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYI 82
           + G++P       L        +   A   F  M+ + G    T  Y   +  L  +G +
Sbjct: 130 AAGLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGV 189

Query: 83  VE-SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           V  ++ L+  +    C  +   Y+ L+DGLCK G    AL+LF  + +  +  +V T++I
Sbjct: 190 VPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTI 249

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           ++  + N GQ+ +A +L   ME+    P+ +T+   + G  +     + IE L  ++ 
Sbjct: 250 LLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRR 307



 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 2/152 (1%)

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKS 114
           + Q  G+      +   I      G   E+V+ F  +     C      Y+ ++  L  S
Sbjct: 127 DAQAAGLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVAS 186

Query: 115 GRL-EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           G +  +AL L++ +     + +  TY++++ GL   G    A  LF +M +  + PNV T
Sbjct: 187 GGVVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKT 246

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              L+       +  +   LL+ M++K   PD
Sbjct: 247 HTILLSSMCNAGQLKEAENLLNSMEDKGCPPD 278


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 37/238 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   +E A+ L  EM  KG++ DVV+++TL  G      ++R   LFDEM   
Sbjct: 50  ILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEK 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +   Y+  I+G CK G   E+  +  T+     + D+  Y+C+I GLCK GR   A
Sbjct: 110 GISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKA 169

Query: 121 LELF----------HSLPRGVLVA-------------------------DVVTYSIMIHG 145
           L+LF           ++   VL+                          +VV+Y+ +I G
Sbjct: 170 LDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMG 229

Query: 146 LYNDGQMDKAHDLFLDMEE--NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           L N+G++D+A  LF  + E  N V P+VITF T+I G  +     K +E+   M E+ 
Sbjct: 230 LCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 98/200 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK K +E A++L  EM     +P+   +  L  GL +  +VE A +L  EM+R G
Sbjct: 16  IINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  I G C  G +     LF  +       ++  YSCLI+G CK G    A 
Sbjct: 76  LEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREAT 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + H++    +  DV TY+ MI GL  DG+  KA DLF  M E    P+ +T+  LI+G 
Sbjct: 136 AVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGL 195

Query: 182 IRINEPSKVIELLHKMKEKN 201
            +        ++   M EK 
Sbjct: 196 CKEGCIGDAFKIFETMLEKG 215



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 37/255 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   I  A  ++  ML KG + +VV +NTL +GL    +++ A KLF  +  D
Sbjct: 190 VLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLED 249

Query: 61  G--VAADTRTYTIFIDGLCKNGYIVESVELFRTL-------RILKCELDI---------- 101
           G  V  D  T+   I GLCK G + ++VE++ T+        +  C + I          
Sbjct: 250 GNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIID 309

Query: 102 ------------------QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
                               YS +IDG CK   L  A  LF  +    L   +  Y+ ++
Sbjct: 310 KAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLM 369

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L  +  +++A  LF +M+E+   P+ I+F  +I G ++  +     ELL+ M++  + 
Sbjct: 370 ASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLT 429

Query: 204 PDASIVSIVVDLLAK 218
           PDA   S  ++ L+K
Sbjct: 430 PDAYTYSSFINRLSK 444



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 1/182 (0%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+R  +  D  +Y   I+GLCK   + ++V+L   +    CE +   Y  L+DGLCK GR
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +E A+ L   + R  L  DVV YS +I G  + G +D+   LF +M E  ++PNV+ +  
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHERQ 235
           LI+GF +     +   +LH M E+ + PD    + ++  L K+  +  +L  F  + E+ 
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG 180

Query: 236 EE 237
           EE
Sbjct: 181 EE 182



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 97/192 (50%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I PD+V +NT+  GL +  ++E+A  L  EM+      ++ TY I +DGLCK G + E++
Sbjct: 6   ILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAM 65

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++    E+D+  YS LI G C  G L+    LF  +    +  +VV YS +I+G 
Sbjct: 66  RLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGF 125

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G   +A  +   M E  + P+V T+  +I G  +     K ++L   M EK   P  
Sbjct: 126 CKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPST 185

Query: 207 SIVSIVVDLLAK 218
              +++++ L K
Sbjct: 186 VTYNVLINGLCK 197



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 3/233 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  Y K+  I+ A+ L+  +   G+ P    ++ +  G  ++H +  A  LF  M+  
Sbjct: 297 ILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKIS 356

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++     Y   +  LCK   + ++  LF+ ++   CE D  +++ +IDG  K+G +  A
Sbjct: 357 GLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSA 416

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL + + +  L  D  TYS  I+ L   GQM++A   F  M  + + P+   + +LI G
Sbjct: 417 KELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKG 476

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS---LPSFT 230
           F   +E  +VI LL +M +  V+ D  I + ++  L  +   L+    LP+F+
Sbjct: 477 FGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFS 529


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+  +++ AL L   M   G  PD V HN L  GL   ++V R  ++   +QRD
Sbjct: 87  VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRD 146

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV   +  T+T  I G CK G + +++ ++  +       +   Y+ LI+G  K G L  
Sbjct: 147 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 206

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+E++  + R     DVVT+S +I G    GQ+D A  ++ DM ++ + PNV TF  +IH
Sbjct: 207 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIH 266

Query: 180 GFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDLLAK 218
              + N   + I LL+++    ++ P A I + V+D+L K
Sbjct: 267 SLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCK 306



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 103/196 (52%), Gaps = 1/196 (0%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
            PDV   N +  G+  + QV++A +L + M   G + DT T+ I +DGLC+   +    E
Sbjct: 79  SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHE 138

Query: 88  LFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + R L R   C  ++  ++ +I G CK+G+LE A+ +++ +    ++ + VTY+++I+G 
Sbjct: 139 VLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGY 198

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +  A +++  M      P+V+TF +LI G+ R  +    + +   M +  + P+ 
Sbjct: 199 GKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNV 258

Query: 207 SIVSIVVDLLAKNEIS 222
              SI++  L K   S
Sbjct: 259 YTFSIIIHSLCKQNRS 274



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 1/150 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
           LI+GYC+  +++ AL ++S+M    I+P+V   + +   L + ++ + A  L +E+  R 
Sbjct: 229 LIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRP 288

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A     Y   ID LCK G + E+  + + +    C  D   Y+ LI G C   R+  A
Sbjct: 289 DIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEA 348

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           +  FH +       D +T +  I  L   G
Sbjct: 349 IMFFHEMVEAGCSPDSITVNCFISCLLKAG 378



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 2/160 (1%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D R  +  +        +  S  L        C ++  AY+ L+  L   GR+   
Sbjct: 6   GYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDV 65

Query: 121 LELFHSLPRG-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + LF    +  V   DV +++++I G+   GQ+ KA +L   M E   +P+ +T   L+ 
Sbjct: 66  VALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVD 125

Query: 180 GFIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
           G  R NE S+  E+L +++   V MP+    + V+    K
Sbjct: 126 GLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCK 165



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I+I+  CK    + A+ L +E+ L   I P   I+N +   L +  +V+ A  +   M+ 
Sbjct: 263 IIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEE 322

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            G   D  TYTI I G C    I E++  F  +    C  D    +C I  L K+G
Sbjct: 323 KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 378



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 138 TYSIMIHGLYNDGQMDKAHDLF-LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            Y+ ++  L   G++     LF   +++   +P+V +F  +I G  R+ +  K +EL+ +
Sbjct: 48  AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 107

Query: 197 MKEKNVMPDASIVSIVVDLLAK-NEIS 222
           M E    PD    +I+VD L + NE+S
Sbjct: 108 MNEFGCSPDTVTHNILVDGLCRTNEVS 134


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P  V +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GL K   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  DM    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D  + + ++  L +   S+++
Sbjct: 327 CCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDA 371



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L D+M R G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD   Y+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +   ++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKK 400



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   +     + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
             +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A +LF 
Sbjct: 177 AVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L    V+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGV 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+ +++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    +   L   M    V PD    S++++ L+K
Sbjct: 190 LGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSK 224


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GYCK  EI  AL++   M    + PDVV +NT+   L +  ++++A ++ D M + 
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYTI I+  C++  + ++++L   +R   C  D+  Y+ L++G+CK GRL+ A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +P      +V+T++I++  + + G+   A  L  DM     +P+V+TF  LI+ 
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R     + I++L KM +    P++
Sbjct: 354 LCRKGLLGRAIDILEKMPKHGCQPNS 379



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 116/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK   ++ A+   ++M S G +P+V+ HN +   +    +   A KL  +M R 
Sbjct: 279 VLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+ G +  ++++   +    C+ +  +Y+ L+ G CK  +++ A
Sbjct: 339 GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRA 398

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ M+  L  DG+++ A ++   +     +P +IT+ T+I G
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  K I+LL +M+ K++ PD    S +V  L++
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 113/217 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M   G +P+ + +N L  G  +  +++RA +  + M   
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G + ++VE+   L    C   +  Y+ +IDGL K+G+   A
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +    L  D +TYS ++ GL  +G++D+A   F + E   V PN +TF +++ G
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLG 528

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  +  + I+ L  M  +   P  +  +I+++ LA
Sbjct: 529 LCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLA 565



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 109/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK K+++ A+     M+S+G  PD+V +NT+   L +  +VE A ++ +++   G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G   ++++L   +R    + D   YS L+ GL + G+++ A+
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH   R  +  + VT++ ++ GL    Q D+A D  + M      P   ++  LI G 
Sbjct: 505 KFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGL 564

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                  + +ELL+++  K +M  +S
Sbjct: 565 AYEGMAKEALELLNELCNKGLMKRSS 590



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++   C + +++ A+ +   ML +   PDV+ +  L         V +A KL DEM+  G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRG 269

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ++G+CK G + E+++    +    C+ ++  ++ ++  +C +GR   A 
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R      VVT++I+I+ L   G + +A D+   M ++   PN +++  L+HGF
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGF 389

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + IE L +M  +   PD    + ++  L K+
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 98/206 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++   C       A  L ++ML KG  P VV  N L   L     + RA  + ++M + 
Sbjct: 314 IILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH 373

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ +Y   + G CK   +  ++E    +    C  DI  Y+ ++  LCK G++E A
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDA 433

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+ + L        ++TY+ +I GL   G+  KA  L  +M    + P+ IT+ +L+ G
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGG 493

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R  +  + I+  H+ +   V P+A
Sbjct: 494 LSREGKVDEAIKFFHEFERMGVRPNA 519



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+  +   A  +   +   G  PDV+ +N +  G  +  ++  A  + D M    
Sbjct: 143 LIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS--- 199

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY   +  LC +G + +++E+   +    C  D+  Y+ LI+  C+   +  A+
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAM 259

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       DVVTY+++++G+  +G++D+A     DM  +   PNVIT   ++   
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     +LL  M  K   P     +I+++ L +
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 3/198 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  E+E        M+  G  PD++   TL  G   + +  +A K+ + ++  G   D  
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVI 173

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G CK G I  ++ +   + +     D+  Y+ ++  LC SG+L+ A+E+   +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+I+I     D  + +A  L  +M +    P+V+T+  L++G  +    
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 188 SKVIELLHKMKEKNVMPD 205
            + I+ L+ M      P+
Sbjct: 291 DEAIKFLNDMPSSGCQPN 308



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           DI   + LI G C+ G+   A ++   L     V DV+TY++MI G    G+++ A  + 
Sbjct: 136 DIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVL 195

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M   +V+P+V+T+ T++       +  + +E+L +M +++  PD    +I+++   ++
Sbjct: 196 DRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252



 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L ++G LE   +   ++     V D++  + +I G    G+  KA  +   +E +   P+
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           VIT+  +I G+ +  E +  + +L +M   +V PD
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM---SVSPD 203


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY K   I+ AL ++  + + G++P VV +N+L  GL +  Q+E A  + DEM  +G
Sbjct: 417 ILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANG 476

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + R+YT   +G  + G + ++  +F+ ++     +DI AY  L+   CKSG ++ A+
Sbjct: 477 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAV 536

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    L  + +TY  M+ G    G++ KA DL  DM+++    + I + + I   
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R  +  +V E L  M+EK +  +A   + ++
Sbjct: 597 FRSGDTEEVTETLAVMREKKLEVNARTYTTLI 628



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 100/200 (50%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + K   +  AL++  EM   G+ P+ +I+  +  G         AFK++++M   G+  D
Sbjct: 316 FTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPD 375

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TY I +   CK G + +++ +   ++  +    I+ Y+ ++DG  K G ++ ALE+F 
Sbjct: 376 IVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFD 435

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    L   VV+Y+ ++ GL    QM+ A  +  +M  N V PN  ++  L  G+ R  
Sbjct: 436 RIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAG 495

Query: 186 EPSKVIELLHKMKEKNVMPD 205
           +  K   +  +MK++N+  D
Sbjct: 496 DVEKAFGMFQRMKKENLAID 515



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++GY +  +   A  ++ +M+S G+KPD+V +N L     +  ++++A  + + +Q +
Sbjct: 346 MIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQAN 405

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TYT  +DG  K G+I +++E+F  ++       + +Y+ L+ GL K+ ++E A
Sbjct: 406 RLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENA 465

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +V +  +Y+ +  G    G ++KA  +F  M++  +A +++ +G L+  
Sbjct: 466 RLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKA 525

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA-KNEIS 222
             +     + +E+  ++ +  +  +      ++D  A K E+S
Sbjct: 526 CCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELS 568



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++  YC+   +E    L ++M  +G + ++ ++ T+  G  EI   E+    F  ++  G
Sbjct: 242 IVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG 301

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    TY   +    K G + +++++   +       +   Y+ ++DG  + G    A 
Sbjct: 302 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAF 361

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +++  +    L  D+VTY+I++H     G+MDKA  +  +++ N + P + T+ +++ G+
Sbjct: 362 KVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGY 421

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           ++     K +E+  ++K   + P                +S NSL S     RQ E
Sbjct: 422 VKGGHIQKALEVFDRIKTAGLRPGV--------------VSYNSLLSGLAKARQME 463



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ + ++ E  L+ +  + + G+ P    +  +     +   + +A  + +EM + G
Sbjct: 277 VLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +   Y + +DG  + G    + +++  +     + DI  Y+ L+   CK+GR++ AL
Sbjct: 337 VSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKAL 396

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++    L+  + TY+ ++ G    G + KA ++F  ++   + P V+++ +L+ G 
Sbjct: 397 GVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGL 456

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +      +L +M    V+P+    + + +  A+
Sbjct: 457 AKARQMENARLMLDEMLANGVVPNERSYTALTEGYAR 493



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y + +++EGA+    EMLS+GI+ +  +  ++  G       E A   F++ + + 
Sbjct: 172 LIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAEN 231

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +      Y   +   C+ G + E+VE L   +     + ++  Y+ +++G  +    E  
Sbjct: 232 LVPGGIVYNSIVQAYCQAGNM-ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKC 290

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  FH L    L     TY  ++      G M KA D+  +M+++ V+PN + +  ++ G
Sbjct: 291 LSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDG 350

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R  + +   ++   M    + PD    +I+V    K
Sbjct: 351 YARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCK 388



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/218 (17%), Positives = 96/218 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY      E A + + +  ++ + P  +++N++     +   +E    L  +M+ +G
Sbjct: 207 IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   YT  ++G  +     + +  F  L+          Y C++    K+G +  AL
Sbjct: 267 FQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKAL 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  +  + + Y++++ G    G    A  ++ DM    + P+++T+  L+H F
Sbjct: 327 DILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAF 386

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     K + +L  ++   ++P     + ++D   K 
Sbjct: 387 CKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKG 424



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/219 (18%), Positives = 93/219 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y ++ +   A   +  M +  IKP+V I+ +L     E   +E A    +EM   
Sbjct: 136 LLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQ 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   +   I G    G    +   F   +          Y+ ++   C++G +E  
Sbjct: 196 GIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETV 255

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +       ++  Y+ +++G       +K    F  ++   ++P   T+G ++  
Sbjct: 256 EALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKL 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +    +K +++L +M +  V P+  I ++++D  A+ 
Sbjct: 316 FTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARG 354



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 35/216 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K +++E A  +  EML+ G+ P+   +  L  G      VE+AF +F  M+++ 
Sbjct: 452 LLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKEN 511

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL--------RILKCEL-------------- 99
           +A D   Y   +   CK+G +  +VE+F+ +        RI  C +              
Sbjct: 512 LAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKAR 571

Query: 100 ----DIQAYSCLIDGLC---------KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
               D+Q +   +D +C         +SG  E   E    +    L  +  TY+ +IHG 
Sbjct: 572 DLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGW 631

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
                 D+A   +   + + +  +      L+ G I
Sbjct: 632 LAAADPDQAISCYEQAKASGLQLDSALSNCLLSGLI 667


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  +   F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 267 MEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  ++     L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
           +  +  T+T  IDG CKNG +  ++E+++ + + +C L D+  Y+ LI GL K G L+ A
Sbjct: 243 LIPNGVTFTTLIDGHCKNGRVDLAMEIYKQM-LSQCLLPDLITYNTLIYGLXKKGDLKQA 301

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L  D  TY  +I G   +G +D A +    M +  +  + + +  LI G
Sbjct: 302 HDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISG 361

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +        ++L +M    + PD    +++++   K 
Sbjct: 362 LCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKK 400



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GL K G + ++ +L   + +   + D   Y  LIDG CK G L+ A
Sbjct: 277 CLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L     L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  + ++PD
Sbjct: 237 EMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPD 281



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +++   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 193 LNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D    +  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVLSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + ++   L   M    V PD    S++++ L K
Sbjct: 190 LGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 119/207 (57%), Gaps = 5/207 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD-EMQR 59
           +LI GYCK+ EI+ AL +   M    + PDVV +NT+   L +  +++ A ++ D +MQR
Sbjct: 182 VLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQR 238

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +    D  TYTI I+  C +  + ++++L   +R   C+ D+  Y+ LI+G+CK GRL+ 
Sbjct: 239 E-CYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDE 297

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A++  +++P      +V+T++I++  + + G+   A  L  DM     +P+V+TF  LI+
Sbjct: 298 AIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILIN 357

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
              R     + I++L KM +   MP++
Sbjct: 358 FLCRKRLLGRAIDVLEKMPKHGCMPNS 384



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 116/217 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+ + +  A+++  +M   G  P+ + +N L  G  +  +++RA +  + M   
Sbjct: 354 ILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 413

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G    +VE+   L    C   +  Y+ +IDGL K G+ E A
Sbjct: 414 GCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA 473

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + R  L  D++TYS ++ GL  +G++D+A  +F DME  ++ P+ +T+  ++ G
Sbjct: 474 AELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 533

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  + S+ I+ L  M EK   P  +  +I+++ +A
Sbjct: 534 LCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGIA 570



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 103/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A+   + M   G +P+V+ HN +   +    +   A +L  +M R 
Sbjct: 284 VLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRK 343

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+   +  ++++   +    C  +  +Y+ L+ G C+  +++ A
Sbjct: 344 GCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRA 403

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ ++  L  DG+ D A ++   +     +P +IT+ T+I G
Sbjct: 404 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDG 463

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             ++ +     ELL +M+ K + PD
Sbjct: 464 LTKVGKTEYAAELLEEMRRKGLKPD 488



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C +  +  A+ L  EM  KG KPDVV +N L  G+ +  +++ A K  + M   
Sbjct: 249 ILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLY 308

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+ I +  +C  G  +++  L   +    C   +  ++ LI+ LC+   L  A
Sbjct: 309 GCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRA 368

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   +P+   + + ++Y+ ++HG   + +MD+A +    M      P+++T+ TL+  
Sbjct: 369 IDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 428

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +    +E+L+++  K   P     + V+D L K
Sbjct: 429 LCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTK 466



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 3/198 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N E+E  L     M+ +G  PDV+   +L  G     +  +A ++ + ++  G   D  
Sbjct: 119 RNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVI 178

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G CK+G I +++++   + +     D+  Y+ ++  LC SG+L+ A+E+    
Sbjct: 179 TYNVLIGGYCKSGEIDKALQVLERMSVAP---DVVTYNTILRSLCDSGKLKEAMEVLDRQ 235

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+I+I    ND  + +A  L  +M +    P+V+T+  LI+G  +    
Sbjct: 236 MQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295

Query: 188 SKVIELLHKMKEKNVMPD 205
            + I+ L+ M      P+
Sbjct: 296 DEAIKFLNNMPLYGCQPN 313



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C++ +   A  +   + + G  PDV+ +N L  G  +  ++++A ++ + M    
Sbjct: 148 LIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMS--- 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TY   +  LC +G + E++E+       +C  D+  Y+ LI+  C    +  A+
Sbjct: 205 VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAM 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +     DVVTY+++I+G+  +G++D+A     +M      PNVIT   ++   
Sbjct: 265 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSM 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                      LL  M  K   P     +I+++ L +  +
Sbjct: 325 CSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRL 364



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 105/220 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++   C       A  L ++ML KG  P VV  N L   L     + RA  + ++M + 
Sbjct: 319 IILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKH 378

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ +Y   + G C+   +  ++E    +    C  DI  Y+ L+  LCK G+ + A
Sbjct: 379 GCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAA 438

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+ + L        ++TY+ +I GL   G+ + A +L  +M    + P++IT+ TL+ G
Sbjct: 439 VEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRG 498

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                +  + I++ H M+  ++ P A   + ++  L K +
Sbjct: 499 LGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQ 538



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L ++G LE  L+    +     + DV+  + +I G    G+  KA  +   +E +   P+
Sbjct: 117 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPD 176

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           VIT+  LI G+ +  E  K +++L +M   +V PD
Sbjct: 177 VITYNVLIGGYCKSGEIDKALQVLERM---SVAPD 208


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +  A  L+SEM  KGI  DVV +NTL  G   + +++ A  L + M    
Sbjct: 204 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKT 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVES-------VELFRTLRILKCELDIQAYSCLIDGLCKS 114
           +  D  TYTI +D LCK G + E+        +L   +R      D+  YS LIDGLCK+
Sbjct: 264 INPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 323

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G L+ A+ LF+ +    +  ++ T++I++ GL+  G++  A ++F D+       NV T+
Sbjct: 324 GHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTY 383

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNE 220
             +I+G  +     + + +L KM++   +P+A +  +I++ L  K+E
Sbjct: 384 NVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDE 430



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 7/209 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA-------FKLF 54
           LI G+C   +++ A+ L + M+ K I PDV  +  L   L +  +V+ A       + L 
Sbjct: 239 LIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLI 298

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           DEM+  G  AD  TY+  IDGLCKNG++  ++ LF  ++      ++  ++ L+DGL K 
Sbjct: 299 DEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKG 358

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GRL+ A E+F  L       +V TY++MI+G    G +++A  +   ME+N   PN  TF
Sbjct: 359 GRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTF 418

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            T+I    + +E  K  +LL +M  + ++
Sbjct: 419 ETIIIALFKKDENDKAEKLLRQMIARGLL 447



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 96/194 (49%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84
           KGI+PD+   N L      + Q+   F +  ++ + G    T T    I GLC  G + +
Sbjct: 87  KGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKK 146

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++     L     +L+   Y  LI+G+CK G    A++L   +   +   DVV YS +I 
Sbjct: 147 ALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIID 206

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L     + +A+ LF +M    ++ +V+T+ TLI+GF  + +  + I LL+ M  K + P
Sbjct: 207 ALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINP 266

Query: 205 DASIVSIVVDLLAK 218
           D    +I+VD L K
Sbjct: 267 DVYTYTILVDALCK 280



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C   +I    ++ +++L +G  P  V  NTL  GL    QV++A    D++   
Sbjct: 98  ILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 157

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   I+G+CK G    +++L + +     + D+  YS +ID LCK   +  A
Sbjct: 158 GFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    + ADVVTY+ +I+G    G++ +A  L   M    + P+V T+  L+  
Sbjct: 218 YGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDA 277

Query: 181 FI---RINEP----SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                ++ E     S V +L+ +M+++    D    S ++D L KN
Sbjct: 278 LCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 323



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
            +V L   L +   + D+   + LI+  C  G++     +   + +       VT + +I
Sbjct: 76  STVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLI 135

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            GL   GQ+ KA      +       N + +GTLI+G  +I +    I+LL K+  +   
Sbjct: 136 KGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTK 195

Query: 204 PDASIVSIVVDLLAKNEI 221
           PD  + S ++D L K ++
Sbjct: 196 PDVVMYSTIIDALCKYQL 213



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING+CK   +E AL + S+M   G  P+     T+ I LF+  + ++A KL  +M   
Sbjct: 385 VMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIAR 444

Query: 61  GV 62
           G+
Sbjct: 445 GL 446


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 115/216 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK+ +I+  L L+ EML K +KP  V +N +  GL    +   A K+F EM   G
Sbjct: 589 LVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSG 648

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  TY I + GLC+N    E++ LF  L  + C+ DI   + +I+ L K  R E A 
Sbjct: 649 TAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEAN 708

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++    LV +V TY +MI  L  +G +++A  +F  ME++  AP+      +I   
Sbjct: 709 DLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 768

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  +  K    + K+    +  +AS  S+++ L +
Sbjct: 769 LQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFS 804



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++E A  +   M+S GI+PDVV +NTL  G  +  +++    LF EM    
Sbjct: 554 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKK 613

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   T TY I +DGL + G    + ++F  +      +DI  Y  L+ GLC++   + A+
Sbjct: 614 VKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAI 673

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH L       D+   + MI+ LY   + ++A+DLF  +  + + PNV T+G +I   
Sbjct: 674 TLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNL 733

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEI 221
           ++     +   +   M++    P + +++ I+  LL K +I
Sbjct: 734 LKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 774



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 35/242 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  E+  A NL++EM+ KG+ PDV  +N++   L +   +++A  +  +M   G
Sbjct: 238 VIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKG 297

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I G   +G+  ES ++FR +       D   +S  +  LCK GR + A 
Sbjct: 298 VEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAE 357

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQ------------------------------ 151
           E+F  +     + D+V+YSI++HG   +G+                              
Sbjct: 358 EIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAH 417

Query: 152 -----MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                MD+A  +F +M+   V PNV+T+ TLI  F R+   +  +E   +M    + P+ 
Sbjct: 418 AKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNT 477

Query: 207 SI 208
           ++
Sbjct: 478 AV 479



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 2/236 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +I   C +   + AL++   M  +G    PDVV  NT+  G F+  +V +A  LF+EM +
Sbjct: 201 VIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQ 260

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  D  TY   +D LCK   + ++  + R +     E D   Y+ +I G   SG  + 
Sbjct: 261 KGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKE 320

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + ++F  +    L+ D VT+S  +  L   G+   A ++F  M      P+++++  L+H
Sbjct: 321 SAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLH 380

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           G+      + +  L H M +K ++ +   ++I++   AK  +   ++  FT  + Q
Sbjct: 381 GYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQ 436



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 113/229 (49%), Gaps = 1/229 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +C+   +  A+  +S+M+S GI+P+  ++++L  G      + +A +   EM   G
Sbjct: 448 LISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG 507

Query: 62  V-AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +   +   ++  I  LC  G ++++ ++F  +  +     I  ++ LIDG C  G++E A
Sbjct: 508 LHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 567

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +  ++    +  DVVT + ++ G    G++D    LF +M    V P  +T+  ++ G
Sbjct: 568 FGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDG 627

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +R    S   ++ H+M +     D     I++  L +N+++  ++  F
Sbjct: 628 LLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLF 676



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G+C + ++  A    SEM+SKG+ +P++V  +++   L    +V  A  +F+ +   
Sbjct: 483 LIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHI 542

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+   IDG C  G + ++  +   +  +  E D+   + L+ G CKSG+++  
Sbjct: 543 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDG 602

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    VTY+I++ GL   G+   A  +F +M ++  A ++ T+  L+ G
Sbjct: 603 LILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 662

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R +   + I L HK+   +   D +I++ +++ L K
Sbjct: 663 LCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYK 700



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++GY          NL+  M  KGI  +    N L     +   ++ A  +F EMQ  
Sbjct: 377 ILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQ 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY+  I   C+ G + +++E F  +  +  E +   Y  LI G C  G L  A
Sbjct: 437 GVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKA 496

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            E     + +G+   ++V +S +IH L  +G++  A D+F  +      P ++TF +LI 
Sbjct: 497 KEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLID 556

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G+  + +  K   +L  M    + PD
Sbjct: 557 GYCLVGKMEKAFGVLDAMVSVGIEPD 582



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           R G+   T   T F+  LC      E+V+ L   +  L C  D  +Y+ +I  LC   R 
Sbjct: 152 RAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRS 211

Query: 118 EIALELFHSLPR--GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           + AL++   + +  G    DVV+++ +IHG +  G++ KA +LF +M +  V P+V T+ 
Sbjct: 212 QEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYN 271

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +++    +     K   +L +M +K V PD 
Sbjct: 272 SIVDALCKARAMDKAEFVLRQMVDKGVEPDG 302



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELFRTLRILKCE--- 98
           A  LFDE+ R G     R+   F+  L        C NG  +  + LF   RI + E   
Sbjct: 61  AHHLFDELLRQGTPVHNRSLNDFLAALARAPDSVSCSNGPAL-VLALFN--RICREEAGP 117

Query: 99  ----LDIQAYSCLIDGLCKSGRLEIALE-------------------------------- 122
               L ++ Y  L+D  C++ R ++                                   
Sbjct: 118 RVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDE 177

Query: 123 ----LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGT 176
               L H +     V D ++Y+ +I  L  D +  +A D+   M  E    +P+V++F T
Sbjct: 178 AVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNT 237

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +IHGF +  E SK   L ++M +K V+PD    + +VD L K
Sbjct: 238 VIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCK 279



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+N   + A+ L+ ++ +   K D+ I NT+   L+++ + E A  LF  +   
Sbjct: 658 ILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTS 717

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC 97
           G+  +  TY + I  L K G + E+  +F ++    C
Sbjct: 718 GLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGC 754


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 127/225 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M  +
Sbjct: 129 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAN 188

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 189 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLA 248

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL  +G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 249 MEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 308

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     +   +M ++N+  D    + ++  L +   S+++
Sbjct: 309 CCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDA 353



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 101/179 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y  MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 235 LIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKG 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + +  + +      LD  AY+ LI GLC+ G+   A 
Sbjct: 295 LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAE 354

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D+ TY+++I+     G + K   L  +M+ N  AP+V+T+  L++G
Sbjct: 355 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 224

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK+G L+ A 
Sbjct: 225 LIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAH 284

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G +D A      M +  +  + + +  LI G 
Sbjct: 285 DLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGL 344

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +     ++L +M    + PD    +++++   K 
Sbjct: 345 CQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 382



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 199 VLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQ 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCKNG + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 259 SLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 318

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    + +  +  D V Y+ +I GL  +GQ   A  +  +M    + P++ T+  +I+ 
Sbjct: 319 FKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINE 378

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+     P     +++++
Sbjct: 379 FCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMN 412



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 4/175 (2%)

Query: 49  RAFKL----FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           R FKL    ++E+   G  A    + I +   CK+G I  +  +F  +        + +Y
Sbjct: 103 RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 162

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF +M  
Sbjct: 163 NTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 222

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + PN +TF TLI G  +       +E+  +M  ++++PD    + ++  L KN
Sbjct: 223 KGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKN 277



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 52  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGF 111

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 112 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 171

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 172 LGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCK 206


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 141 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 102/179 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D+ TY+++I+     G + K   L  +M+ N  AP+V+T+  L++G
Sbjct: 367 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 394



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P++ T+  +I+ 
Sbjct: 331 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+     P     +++++
Sbjct: 391 FCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMN 424



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++++   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 127 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 186

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 187 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 246

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 247 LIDGHCKN 254



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +   R  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 124 YEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 218


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C   ++EG   L  EM  +GI+PD+  +N L  GL  + +++ A KL+DE +  G
Sbjct: 506 LILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASG 565

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ++  TY I ++G CK   I +   LF  L   K EL+   Y+ +I   C++G +  AL
Sbjct: 566 LISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAAL 625

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  ++    ++ +  TYS +IHG+ N G ++ A  L  +M +    PNV+ +  LI G+
Sbjct: 626 QLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGY 685

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++ +         +M   N+ P+    ++++D   K
Sbjct: 686 CKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCK 722



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 113/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ GYCK   IE   NL++E+LSK ++ + +++N +     +   V  A +L + M+  
Sbjct: 575 IMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSK 634

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I G+C  G + ++  L   +R      ++  Y+ LI G CK G+++ A
Sbjct: 635 GILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTA 694

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              +  +    +  +  TY++MI G    G M+KA++L + M+E+ + P+V+T+  L +G
Sbjct: 695 ESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNG 754

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F + N+     ++  +M  + +  D    + +V
Sbjct: 755 FCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 6/240 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   ++  A  +  EML +G+  D + +N L +G     +VE  F+L +EM + G
Sbjct: 471 LIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRG 530

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + GLC  G + ++++L+   +      +I  Y  +++G CK+ R+E   
Sbjct: 531 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 590

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ L    +  + + Y+I+I     +G +  A  L  +M+   + PN  T+ +LIHG 
Sbjct: 591 NLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGV 650

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK------NEISLNSLPSFTVHERQ 235
             I        L+ +M+++  +P+    + ++    K       E +   + SF +H  +
Sbjct: 651 CNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNK 710



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 94/188 (50%), Gaps = 3/188 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I  +C+N  +  AL L   M SKGI P+   +++L  G+  I  VE A  L DEM+++
Sbjct: 610 IIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKE 669

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   YT  I G CK G +  +   +  +       +   Y+ +IDG CK G +E A
Sbjct: 670 GFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKA 729

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +V DVVTY+++ +G      MD A  +   M    +  + IT+ TL+HG
Sbjct: 730 NNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789

Query: 181 FIRINEPS 188
           +   N P+
Sbjct: 790 W---NPPT 794



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 100/199 (50%), Gaps = 1/199 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N     A++++  +  KG  P +   N     L + ++ E+  ++F  M  +G   D  
Sbjct: 163 RNLGFSCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMS-EGACPDVF 221

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           ++T  I+ LCK G +  ++ELF  +  L    ++  Y+C+I+GLC++GRL+ A EL   +
Sbjct: 222 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM 281

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  ++ TY  +I+GL      DK + +  +M      PNV+ F  LI G+ ++   
Sbjct: 282 TVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNI 341

Query: 188 SKVIELLHKMKEKNVMPDA 206
              +++   M  KN+ P +
Sbjct: 342 EGALKIKDVMISKNITPTS 360



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 100/213 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G CK+ +   A  L+  +L KG     V  N L  GL    ++  A ++  EM   
Sbjct: 435 MLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLER 494

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C  G +     L   +     + DI  Y+ L+ GLC  G+L+ A
Sbjct: 495 GLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDA 554

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L+       L++++ TY IM+ G     +++   +LF ++    +  N I +  +I  
Sbjct: 555 IKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKA 614

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +    +  ++LL  MK K ++P+ +  S ++
Sbjct: 615 HCQNGNVAAALQLLENMKSKGILPNCATYSSLI 647



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 1/169 (0%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A  +F  + R G     +T    +  L K     +  E+FR +    C  D+ +++ +I+
Sbjct: 170 AVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGACP-DVFSFTNVIN 228

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
            LCK G++E A+ELF  + +  +  +VVTY+ +I+GL  +G++D A +L   M    V P
Sbjct: 229 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQP 288

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           N+ T+G LI+G I++N   KV  +L +M      P+  + + ++D   K
Sbjct: 289 NLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCK 337



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK      A      MLS+  +P  ++   L  GL +  +   A +L+  +   G
Sbjct: 401 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A   T    I GLC  G + E+  + + +      +D   Y+ LI G C  G++E   
Sbjct: 461 SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCF 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  D+ TY+ ++ GL N G++D A  L+ + + + +  N+ T+G ++ G+
Sbjct: 521 RLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGY 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N    V  L +++  K +  ++ + +I++    +N
Sbjct: 581 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQN 618



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK  ++E A+ L+ +M   GI P+VV +N +  GL +  +++ AF+L ++M   G
Sbjct: 226 VINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + +TY   I+GL K  +  +   +   +       ++  ++ LIDG CK G +E AL
Sbjct: 286 VQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGAL 345

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +  + +    V  YS+M  G     Q++ A +   ++  + ++ +     +++H 
Sbjct: 346 KIKDVMISKNITPTSVTLYSLM-QGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHW 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +             M  +N  P   +++++V  L K+
Sbjct: 405 LCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKD 443



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
              A+++F+ L R      + T +  +  L    + +K  ++F  M E A  P+V +F  
Sbjct: 167 FSCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGA-CPDVFSFTN 225

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +I+   +  +    IEL  KM++  + P+    + +++ L +N
Sbjct: 226 VINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQN 268


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+  +++ AL L   M   G  PD V HN L  GL   ++V R  ++   +QRD
Sbjct: 256 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRD 315

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV   +  T+T  I G CK G + +++ ++  +       +   Y+ LI+G  K G L  
Sbjct: 316 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 375

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+E++  + R     DVVT+S +I G    GQ+D A  ++ DM ++ + PNV TF  +IH
Sbjct: 376 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIH 435

Query: 180 GFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDLLAK 218
              + N   + I LL+++    ++ P A I + V+D+L K
Sbjct: 436 SLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCK 475



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 103/196 (52%), Gaps = 1/196 (0%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
            PDV   N +  G+  + QV++A +L + M   G + DT T+ I +DGLC+   +    E
Sbjct: 248 SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHE 307

Query: 88  LFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + R L R   C  ++  ++ +I G CK+G+LE A+ +++ +    ++ + VTY+++I+G 
Sbjct: 308 VLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGY 367

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +  A +++  M      P+V+TF +LI G+ R  +    + +   M +  + P+ 
Sbjct: 368 GKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNV 427

Query: 207 SIVSIVVDLLAKNEIS 222
              SI++  L K   S
Sbjct: 428 YTFSIIIHSLCKQNRS 443



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 1/150 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
           LI+GYC+  +++ AL ++S+M    I+P+V   + +   L + ++ + A  L +E+  R 
Sbjct: 398 LIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRP 457

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A     Y   ID LCK G + E+  + + +    C  D   Y+ LI G C   R+  A
Sbjct: 458 DIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEA 517

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           +  FH +       D +T +  I  L   G
Sbjct: 518 IMFFHEMVEAGCSPDSITVNCFISCLLKAG 547



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 3/172 (1%)

Query: 50  AFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           A +LFD+M    G + D R  +  +        +  S  L        C ++  AY+ L+
Sbjct: 163 ALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLM 222

Query: 109 DGLCKSGRLEIALELFHSLPRG-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             L   GR+   + LF    +  V   DV +++++I G+   GQ+ KA +L   M E   
Sbjct: 223 SSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGC 282

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
           +P+ +T   L+ G  R NE S+  E+L +++   V MP+    + V+    K
Sbjct: 283 SPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCK 334



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I+I+  CK    + A+ L +E+ L   I P   I+N +   L +  +V+ A  +   M+ 
Sbjct: 432 IIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEE 491

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            G   D  TYTI I G C    I E++  F  +    C  D    +C I  L K+G
Sbjct: 492 KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 547


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ E F  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E++  +    L+ D++TY+ +I+GL   G + +AHDL  DM    + P+ IT+ TLI G
Sbjct: 267 KEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D  + + ++  L +   S+++
Sbjct: 327 CCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDA 371



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A  +Y +MLS+ + PD++ +NTL  GL +   +++A  L D+M   G
Sbjct: 253 LIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IBG CK G +  + E  + +      LD   Y+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +  AP+V+T+  L++G
Sbjct: 373 KMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A + FDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  + E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKK 400



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A   + EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIBG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+     P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 430



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + + + L++G  + G L+    L   +    +  DV TYS++I+GL  + +MD A++ F 
Sbjct: 177 VVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +        E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPD 281



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V++  TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 190 LGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCK 224



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+ + +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     E   +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 13/227 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+   ++ ALN+ ++M  +G+ PD   +N L  G  ++  +++A  L  E+ ++
Sbjct: 346 ILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKN 405

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                + TYTI I G+C+NG + E+ ++F  +  L C   I  ++ LIDGLCK+G LE A
Sbjct: 406 DCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEA 465

Query: 121 LELFHSLPRGV-------------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LF+ +  G               V D  +   M+  L   G + KA+ L + + ++ V
Sbjct: 466 RHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGV 525

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            P+++T+  LI+GF +    +   +L  +++ K   PD+     ++D
Sbjct: 526 VPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLID 572



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CKN + + AL ++ EM  KGI P+ +I+  +  GL +  + +   +L + M+  
Sbjct: 206 ILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVS 265

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+ T    +DG CK G I E+  L +        L I+ YS LIDGL ++ R +  
Sbjct: 266 GCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEV 325

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  DVV Y+I+I G    G +D A ++  DM +  ++P+   +  LI G
Sbjct: 326 QEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKG 385

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F  +    K   L  ++ + +  P +   +I++  + +N
Sbjct: 386 FCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRN 424



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 94/192 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y++ML     P+      L  GL +  + + A K+FDEM + G+  +T  YTI + 
Sbjct: 185 ALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILS 244

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC+     +   L  T+++  C  D    + L+DG CK G+++ A  L     +   V 
Sbjct: 245 GLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVL 304

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            +  YS +I GL+   + D+  +    M +  + P+V+ +  LI GF  +      + +L
Sbjct: 305 GIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNML 364

Query: 195 HKMKEKNVMPDA 206
           + M ++ + PD 
Sbjct: 365 NDMTQRGLSPDT 376



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 102/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y K+   E A+  + +M   G KPDV  +N++   + +      A  ++++M + 
Sbjct: 136 VLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKL 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+ I ++GLCKNG   +++++F  +       +   Y+ ++ GLC++ R +  
Sbjct: 196 NYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDV 255

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L +++       D +T + ++ G    GQ+D+A  L    E+      +  + +LI G
Sbjct: 256 HRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             R     +V E   KM +  + PD  + +I++
Sbjct: 316 LFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILI 348



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 34/231 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+CK K I GA  L+ E+  KG  PD V + TL  G   + + E AF++ D+M ++
Sbjct: 534 VLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKN 593

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF----RTL---------------------RIL 95
           G    +  Y   +   C+ G +  +  L+    R+L                     + +
Sbjct: 594 GCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAV 653

Query: 96  KCEL---------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +C L         +I  Y+  + GLC++ R E AL++F  L    +  +  +  ++I+GL
Sbjct: 654 RCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGL 713

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
             DG ++ A D+FL   E            L+   I  ++    ++LL++M
Sbjct: 714 CKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRM 764



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 13/209 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           ILI G C+N  ++ A  ++++M + G  P ++  N L  GL +  ++E A  LF +M   
Sbjct: 416 ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIG 475

Query: 58  ----------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
                     Q      DT +    ++ LC++G I+++ +L   L       DI  Y+ L
Sbjct: 476 KNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVL 535

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           I+G CK+  +  A +LF  L       D VTY  +I G +   + + A  +   M +N  
Sbjct: 536 INGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGC 595

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHK 196
            P+   +  L+    R  + S    L  K
Sbjct: 596 TPSSAVYKCLMTWSCRKGKLSVAFSLWLK 624



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 90/187 (48%)

Query: 32  VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           V HN +   L +    +  +K+ +E++   +     T+++ I    K+G   ++VE F  
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           ++   C+ D+  Y+ ++  + +     +AL +++ + +     +  T+ I+++GL  +G+
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            D A  +F +M +  + PN + +  ++ G  +      V  LL+ MK     PD+   + 
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 212 VVDLLAK 218
           ++D   K
Sbjct: 277 LLDGFCK 283



 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 58/123 (47%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +ID L K    +   ++   L    +     T+S++I      G  +KA + F  M++  
Sbjct: 102 VIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFG 161

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             P+V T+ +++H  ++       + + ++M + N  P+ +   I+++ L KN  + ++L
Sbjct: 162 CKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDAL 221

Query: 227 PSF 229
             F
Sbjct: 222 KMF 224


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 16/242 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    I+ AL L+  ML +G+ P+ +  +TL  G F+  + E+A  L+ E    G
Sbjct: 381 LLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARG 440

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  T    I+GLCKN  + E+ ELF  ++   C  D   Y  LIDG CK G L  A 
Sbjct: 441 LARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRAT 500

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     V  V  ++  I GL+   Q  K +D+ ++M    ++PN +T+G LI G+
Sbjct: 501 QIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGW 560

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +         L  +M EK + P+  I S++V                +   R+ +VDE+
Sbjct: 561 CKEGNLHDACILYFEMVEKGLKPNLFICSVLV----------------SCFYREGKVDEA 604

Query: 242 NV 243
           N+
Sbjct: 605 NL 606



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G CK   +  A NL+ ++  KG  PD   +++L  G      ++ AF L DEM   
Sbjct: 651 IVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSA 710

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TY   I GLCK+  +  +V LF  L+      +   Y+ LIDG CK G    A
Sbjct: 711 RLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEA 770

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + +  +   V TY+I+IHGL   G M++A  L   M EN V PN IT+ TLI G
Sbjct: 771 FKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQG 830

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           + R      + +L ++M    ++P
Sbjct: 831 YARCGNMKAITKLYNEMHICGLLP 854



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 118/226 (52%), Gaps = 18/226 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+   +E A  +  EM+  G++ ++ ++NT+  G  ++ ++    KL    +  G
Sbjct: 276 LINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRG 335

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ--------AYSCLIDGLCK 113
           V  D  +Y   +DG C+ G++ ++ E         C++ ++         Y+ L++G C 
Sbjct: 336 VNLDEYSYNTLVDGYCRKGFMTKAFE--------TCDMMVRNGFTGTTLTYNTLLNGFCS 387

Query: 114 SGRLEIALEL-FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
            G ++ AL+L F  L RGV V + ++ S ++ G +  G+ ++A +L+ +     +A NV+
Sbjct: 388 RGAIDDALKLWFLMLKRGV-VPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVV 446

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T  T+I+G  +    ++  EL H+MKE +   D+     ++D   K
Sbjct: 447 TINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCK 492



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 1/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L+ GYCK   +E A  +  E+  ++ I  D V +  L  G  +  ++E A ++ DEM  
Sbjct: 239 LLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMID 298

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  +   Y   I+G CK G + E  +L +        LD  +Y+ L+DG C+ G +  
Sbjct: 299 AGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTK 358

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E    + R       +TY+ +++G  + G +D A  L+  M +  V PN I+  TL+ 
Sbjct: 359 AFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLD 418

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF +  +  + + L  +   + +  +   ++ V++ L KN 
Sbjct: 419 GFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNR 459



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 16/235 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK   +  A  LY EM+ KG+KP++ I + L    +   +V+ A  +  ++    
Sbjct: 556 LIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTD 615

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL--FRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +  D    T+ I    K  +I+ES+     ++ +I+        ++ +I GLCK GR+  
Sbjct: 616 MIQDCSASTLNIG---KVAHIIESLAGGNHQSAKIM--------WNIVILGLCKLGRVAD 664

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  LF  L     + D  TYS +IHG    G +D A  L  +M    + PN++T+ +LI+
Sbjct: 665 ARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIY 724

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
           G  +    S+ + L +K++ K + P+A   + ++D   K+    N+  +F + ++
Sbjct: 725 GLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDG---NTTEAFKLKQK 776



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+   +  A      M+  G     + +NTL  G      ++ A KL+  M + G
Sbjct: 346 LVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRG 405

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  + +  +DG  K G   +++ L++         ++   + +I+GLCK+ R+  A 
Sbjct: 406 VVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAE 465

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELFH +       D +TY  +I G    G + +A  + ++ME     P+V  F + I G 
Sbjct: 466 ELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGL 525

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  KV ++  +M  K + P+
Sbjct: 526 FIAKQSGKVNDIRVEMSAKGLSPN 549



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 98/184 (53%), Gaps = 1/184 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  +    +++ AL ++ EM   G +  +   N L   L +   +  A  +F +M+  
Sbjct: 99  LLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCA 158

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T  I     C++G +  + +  + +  +  ++++ AY  ++DG C+ G+ E+A
Sbjct: 159 GTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVA 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
            +L HSL    L  +VVTY++++ G   +G+M++A  +  +++EN  +  + + +G LI+
Sbjct: 219 RKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALIN 278

Query: 180 GFIR 183
           G+ +
Sbjct: 279 GYCQ 282



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%)

Query: 32  VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           ++ N + +GL ++ +V  A  LF++++  G   D  TY+  I G   +G I  +  L   
Sbjct: 647 IMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDE 706

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           +   +   +I  Y+ LI GLCKS  +  A+ LF+ L    +  + +TY+ +I G   DG 
Sbjct: 707 MLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGN 766

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             +A  L   M +  + P V T+  LIHG        + I+LL +M E NV P+
Sbjct: 767 TTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPN 820



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 4/170 (2%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           Q++ A  +FDEM + G     R+    ++ L + G I  +V +F+ +R      D    +
Sbjct: 109 QLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVA 168

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            +    C+ GR+  A +    +    L  ++V Y  ++ G    GQ + A  L   ++  
Sbjct: 169 IMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVK 228

Query: 166 AVAPNVITFGTLIHGFI---RINEPSKVIELLHKMKEKNVMPDASIVSIV 212
            ++PNV+T+  L+ G+    R+ E  KV++ + K  EK V+ + +  +++
Sbjct: 229 GLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEI-KENEKIVIDEVAYGALI 277



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 105 SC--LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           SC  L++ L ++G +  A+ +F  +     + D  T +IM      DG++  A D   +M
Sbjct: 131 SCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEM 190

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           EE  +  N++ +  ++ G+ RI +     +LLH ++ K + P+    +++V
Sbjct: 191 EEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLV 241


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GYCK  EI  AL++   M    + PDVV +NT+   L +  ++++A ++ D M + 
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYTI I+  C++  +  +++L   +R   C  D+  Y+ L++G+CK GRL+ A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +P      +V+T++I++  + + G+   A  L  DM     +P+V+TF  LI+ 
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R     + I++L KM +    P++
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNS 379



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 116/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK   ++ A+   ++M S G +P+V+ HN +   +    +   A KL  +M R 
Sbjct: 279 VLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+ G +  ++++   +    C+ +  +Y+ L+ G CK  +++ A
Sbjct: 339 GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRA 398

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ M+  L  DG+++ A ++   +     +P +IT+ T+I G
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  K I+LL +M+ K++ PD    S +V  L++
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 114/217 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M   G +P+ + +N L  G  +  +++RA +  + M   
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G + ++VE+   L    C   +  Y+ +IDGL K+G+   A
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +    L  D +TYS ++ GL  +G++D+A   F + E   + PN +TF +++ G
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  +  + I+ L  M  +   P+ +  +I+++ LA
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 110/206 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK K+++ A+     M+S+G  PD+V +NT+   L +  +VE A ++ +++   G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G   ++++L   +R    + D   YS L+ GL + G+++ A+
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH   R  +  + VT++ ++ GL    Q D+A D  + M      PN  ++  LI G 
Sbjct: 505 KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                  + +ELL+++  K +M  +S
Sbjct: 565 AYEGMAKEALELLNELCNKGLMKKSS 590



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++   C + +++ A+ +   ML +   PDV+ +  L         V  A KL DEM+  G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ++G+CK G + E+++    +    C+ ++  ++ ++  +C +GR   A 
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R      VVT++I+I+ L   G + +A D+   M ++   PN +++  L+HGF
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + IE L +M  +   PD    + ++  L K+
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+  +   A  +   +   G  PDV+ +N +  G  +  ++  A  + D M    
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS--- 199

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY   +  LC +G + +++E+   +    C  D+  Y+ LI+  C+   +  A+
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       DVVTY+++++G+  +G++D+A     DM  +   PNVIT   ++   
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     +LL  M  K   P     +I+++ L +
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 3/198 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  E+E        M+  G  PD++   TL  G   + +  +A K+ + ++  G   D  
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G CK G I  ++ +   + +     D+  Y+ ++  LC SG+L+ A+E+   +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+I+I     D  +  A  L  +M +    P+V+T+  L++G  +    
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 188 SKVIELLHKMKEKNVMPD 205
            + I+ L+ M      P+
Sbjct: 291 DEAIKFLNDMPSSGCQPN 308



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           DI   + LI G C+ G+   A ++   L     V DV+TY++MI G    G+++ A  + 
Sbjct: 136 DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVL 195

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M   +V+P+V+T+ T++       +  + +E+L +M +++  PD    +I+++   ++
Sbjct: 196 DRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 114/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK   +  A   + EML  G+ PD   +    +G  ++    +AFKL +EM   
Sbjct: 452 VLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTK 511

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY +F++GLCK G + E+ EL + +       D   Y+  +    ++G L   
Sbjct: 512 GFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREG 571

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F+ +        VVTY+++IH    +G++D A   FL+M+E  V PNVIT+  LI+G
Sbjct: 572 REIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLING 631

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F ++ +  +  +   +M+EK + P+    +I+++
Sbjct: 632 FCKVRKMDQACKFFIEMQEKGIFPNKYTYTILIN 665



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK   +  AL L+ EM+++G+ P V  HNT+  G  +  ++  A +   +M +  
Sbjct: 313 LICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKN 372

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G C+ G I E+  L   LR      +I  Y+ LIDGLC+ G LE AL
Sbjct: 373 LMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETAL 432

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  DVVTY+++++G    G M  A + F +M    +AP+   +   I G 
Sbjct: 433 KLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGE 492

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +++ + +K  +L  +M  K   PD    ++ V+ L K
Sbjct: 493 LKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCK 529



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G  K  +   A  L  EML+KG  PDV+ +N    GL ++  +E A +L  +M RDG 
Sbjct: 489 IVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGH 548

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  TYT F+    +NG++ E  E+F  +        +  Y+ LI     +GRL+ A+ 
Sbjct: 549 VPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMA 608

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
            F  +    +V +V+TY+++I+G     +MD+A   F++M+E  + PN  T+  LI+   
Sbjct: 609 YFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENC 668

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + +  + + L  +M  K + PD+     ++  L K+
Sbjct: 669 NMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKD 705



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ +CK  E++ AL+L  +M  +G  P  V  N L  GL +  ++++A  L  EM + G
Sbjct: 243 MLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I G CK G +VE++ L+  +        + +++ ++ G CK G++  A 
Sbjct: 303 LRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDAR 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    + +  L+ D+++Y+ +I+G    G + +A  L  ++    ++ N++T+ TLI G 
Sbjct: 363 QQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGL 422

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R+ +    ++L   M  + + PD    +++V+
Sbjct: 423 CRLGDLETALKLKEDMINRGIHPDVVTYTVLVN 455



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 103/204 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y  M   GI+P V  +NT+     +  +V+RA  L  +MQ  G      T+ + I+
Sbjct: 221 ALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLIN 280

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GL K G + ++  L + +      +    Y+ LI G CK G L  AL L+  +    +  
Sbjct: 281 GLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSP 340

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V +++ +++G   +G+M  A     DM +  + P++I++ TLI+GF R+    +   LL
Sbjct: 341 TVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILL 400

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            +++ +N+  +    + ++D L +
Sbjct: 401 DELRFRNLSFNIVTYNTLIDGLCR 424



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI GY   +     L ++ +M+     PDV   N +   L + + + +A +++  M   
Sbjct: 176 VLIGGYLNYQ----CLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEY 231

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   +   CK G +  +++L   ++   C      ++ LI+GL K G L+ A
Sbjct: 232 GIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQA 291

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  L     TY+ +I G    G + +A  L+ +M    V+P V +  T+++G
Sbjct: 292 KGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYG 351

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F +  + S   + L  M +KN+MPD
Sbjct: 352 FCKEGKMSDARQQLSDMLKKNLMPD 376



 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +  N  ++ A+  + EM  KG+ P+V+ +N L  G  ++ ++++A K F EMQ  
Sbjct: 592 VLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEK 651

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYTI I+  C  G   E++ L+  +   +   D   +  L+  L K  +++ A
Sbjct: 652 GIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQ-A 710

Query: 121 LELFHSL 127
           ++   SL
Sbjct: 711 VQFIESL 717



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 52/99 (52%)

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L +F  + R   + DV   + ++  L +   + KA +++  M E  + P V T+ T++H
Sbjct: 186 CLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLH 245

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F +  E  + ++L+ KM+E+   P     +++++ L+K
Sbjct: 246 SFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSK 284


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G CK++++E A +   EM+ +G+KP+V  +  L  G  +  +++ A + F EM   G
Sbjct: 522 VIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCG 581

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +    T  IDG CK G   E+  +FR +       D++ YS LI GL ++G+L+ A+
Sbjct: 582 IAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAM 641

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL        LV DV TY+ +I G    G + KA  L   M +  ++PN+IT+  LI+G 
Sbjct: 642 ELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGL 701

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  E  +  EL   +  K +  +A   + ++D   K+
Sbjct: 702 CKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKS 739



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 116/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK+ E++ A   + EML  GI P+ V+   L  G  +      A  +F  M    
Sbjct: 557 LIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRS 616

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D RTY+  I GL +NG +  ++EL           D+  Y+ +I G CK G +  A 
Sbjct: 617 VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAF 676

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +++TY+ +I+GL   G++++A +LF  +    +A N +T+ T+I G+
Sbjct: 677 QLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGY 736

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +    SK   L  +M  K V PD+ + S ++D   K   +  +L  F
Sbjct: 737 CKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLF 784



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK      A +++  ML + + PDV  ++ L  GL    +++ A +L  E    G
Sbjct: 592 LIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKG 651

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G CK G I ++ +L   +       +I  Y+ LI+GLCK+G +E A 
Sbjct: 652 LVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAR 711

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +P   L  + VTY+ +I G    G + KA  LF +M    V P+   +  LI G 
Sbjct: 712 ELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGC 771

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
            +     K + L  +  +K     +S+ +++
Sbjct: 772 RKEGNTEKALSLFLESVQKGFASTSSLNALM 802



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C++  IE A  ++  M+S G+KP+ VI+ TL  G  +  + + A ++   M + 
Sbjct: 451 MIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKK 510

Query: 61  GVAADTRTYTIFIDGLCKN-------GYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           GV  D   Y   I GLCK+        Y+VE +E  R L+      ++  Y  LI G CK
Sbjct: 511 GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIE--RGLKP-----NVYTYGALIHGYCK 563

Query: 114 SGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           SG +++A   F   L  G+   DVV  + +I G   +G   +A  +F  M   +V P+V 
Sbjct: 564 SGEMQVADRYFKEMLGCGIAPNDVVC-TALIDGYCKEGSTTEATSIFRCMLGRSVHPDVR 622

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEISLNSLPSFTV 231
           T+  LIHG +R  +    +ELL +  EK ++PD  +  SI+     +  I      +F +
Sbjct: 623 TYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIG----KAFQL 678

Query: 232 HE 233
           HE
Sbjct: 679 HE 680



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  ++E A  L +EM+  GIKPD   +N +  G  +     R   L  EM++  
Sbjct: 382 LVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSN 441

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T  + I+GLC++G I ++  +F  +  L  + +   Y+ LI G  + GR + A+
Sbjct: 442 LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAV 501

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  DV+ Y+ +I GL    +M++A D  ++M E  + PNV T+G LIHG+
Sbjct: 502 RILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGY 561

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E         +M    + P+  + + ++D   K
Sbjct: 562 CKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCK 598



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK+  +  A  L+ EM  KG+ PD  +++ L  G  +    E+A  LF E  + G
Sbjct: 732 IIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKG 791

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A+ T +    +DG CK+G ++E+ +L   +     + D   Y+ LID  CK+G L+ A 
Sbjct: 792 FAS-TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAE 850

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + +  L+ + +TY+ ++ G    G+  +   LF +M    + P+ +T+  +I   
Sbjct: 851 QFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAH 910

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  +  K ++L+  M +K      ++  +++D L + E
Sbjct: 911 LKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKE 949



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ K K    A  +  EM SKG+KP  V +  L  G         AF++ +EM   
Sbjct: 311 ILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLAR 370

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   + G+CK G + ++  L   + ++  + D Q Y+ +I+G  K       
Sbjct: 371 GVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRV 430

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + +  LV    T  ++I+GL   G ++ A  +F  M    V PN + + TLI G
Sbjct: 431 KDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKG 490

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++     + + +L  M +K V PD    + V+  L K+ 
Sbjct: 491 HVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSR 530



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 6/216 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+  E++ A  L   M  KG+  DV  ++ L  G  +  +   A  + +EM   
Sbjct: 276 VVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSK 335

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      YT  IDG  + G   E+  +   +     +L++  Y+ L+ G+CK G +E A
Sbjct: 336 GLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKA 395

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    +  D  TY+ MI G   +    +  DL  +M+++ + P   T G +I+G
Sbjct: 396 DALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIING 455

Query: 181 FIR---INEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             R   I + S+V E++  +    V P+A I + ++
Sbjct: 456 LCRHGSIEDASRVFEIMVSL---GVKPNAVIYTTLI 488



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K  ++E     Y+ ML   +  DV  +  L    F     +   +L  EM+  G
Sbjct: 207 LLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY + I GLC+ G + E+ EL + +       D+  YS LIDG  K  R   A 
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 122 ----ELFHS--------------------------------LPRGVLVADVVTYSIMIHG 145
               E+F                                  L RGV + ++ TY+ ++ G
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKL-NLFTYNALVKG 385

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +   G M+KA  L  +M    + P+  T+  +I G+++    S+V +LL +MK+ N++P 
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 206 ASIVSIVVDLLAKN 219
           A    ++++ L ++
Sbjct: 446 AYTCGMIINGLCRH 459



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GY K    + A++ +      G    ++  N L   L + +++E  ++ ++ M   
Sbjct: 171 LLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEA 230

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TYT  I+   + G   E   L   +    C   +  Y+ +I GLC++G ++ A
Sbjct: 231 NVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEA 290

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  LVADV TYSI+I G     +  +A  +  +M    + P  + +  LI G
Sbjct: 291 FELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDG 350

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
           F+R  +  +   +  +M  + V
Sbjct: 351 FMRQGDSGEAFRVKEEMLARGV 372



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI+ +CK   ++ A   + +M  + + P+ + +  L  G     +    F LFDEM   
Sbjct: 835  ILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAK 894

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
             +  D  T+++ ID   K G  V++++L   +  LK   ++    C  LID LC+   + 
Sbjct: 895  DIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDM--LKKGGNVSKNVCHVLIDPLCRKEHVS 952

Query: 119  IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
              L++   +    L   + T S ++   +  G+MD A  +   M      P+      LI
Sbjct: 953  EVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLI 1012

Query: 179  H 179
            +
Sbjct: 1013 N 1013



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 35/152 (23%)

Query: 104 YSCLIDGLCKSGRLEIA-------------------------------LELFHSLPRGVL 132
           +  LIDG  K G  + A                               LELF     G+L
Sbjct: 169 FELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGML 228

Query: 133 VA----DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
            A    DV TY+ +I+  +  G   +   L  +MEE   +P+++T+  +I G  R  E  
Sbjct: 229 EANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVD 288

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +  EL   M +K ++ D    SI++D   K +
Sbjct: 289 EAFELKKLMDKKGLVADVFTYSILIDGFGKQK 320



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 68/161 (42%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L++GY           L+ EM++K I+PD V  + +     +     +  KL D+M + G
Sbjct: 871  LLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKG 930

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                     + ID LC+  ++ E +++   +      L +   S L+    K+G+++ A 
Sbjct: 931  GNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAA 990

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             +  S+ R   V D    + +I+   +    + A D    M
Sbjct: 991  RVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQM 1031


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L+N   K   ++ A + +  ML +G+ P++  +N L     ++ Q++ A  LF EM+R 
Sbjct: 140 FLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRR 199

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY I +D LC  G +  + +LF  +    C  D   YS L++GL KSGR+E A
Sbjct: 200 GFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEA 259

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            ++F  +  RGV V D+V Y+ ++  L   G MD+   L  +M      P+  +F T++ 
Sbjct: 260 HKVFREMVDRGVAV-DLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMD 318

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + N+P    E+  +M E    PD    +I++D  A+
Sbjct: 319 ALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYAR 357



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + ++ +++ A+ ++ EM  KG +PD   +  L   L +  +V+ A   FD M   
Sbjct: 105 VLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLER 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + +D   K G +  ++ LF  ++    +  +  Y+ L+D LC +GR+  A
Sbjct: 165 GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAA 224

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LFH +       D  TYS +++GL   G++++AH +F +M +  VA +++ + +L+  
Sbjct: 225 RKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLAT 284

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +V +L+ +M  K   PDA   + ++D L K
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGK 322



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 110/216 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  K+  +E A  ++ EM+ +G+  D+V +N+L   L +   ++R +KL  EM R G
Sbjct: 246 LVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKG 305

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  ++   +D L K      + E+F  +    C+ D+ +Y+ LID   + G    A 
Sbjct: 306 FHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQAR 365

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     + +  TY+ +IH L  DGQ+D+A  +  +ME     P+V+T+  L+   
Sbjct: 366 QMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDML 425

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +  E  +   L  +MK+K V PD    ++ +D LA
Sbjct: 426 GKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLA 461



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 118/219 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ + K  +++ AL L++EM  +G +P VV +N L   L    +V  A KLF +M  D
Sbjct: 175 LLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGD 234

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D+ TY+  ++GL K+G + E+ ++FR +      +D+  Y+ L+  L K+G ++  
Sbjct: 235 GCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRV 294

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + R     D  +++ ++  L    + D A ++F  M E+   P++I++  LI  
Sbjct: 295 WKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDS 354

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + R  + ++  ++L +M E   +P+    + ++  LA +
Sbjct: 355 YARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATD 393



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  Y +  +   A +L+++  S    P V     L   L    + ERA  ++ ++ + G
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y + I    ++G +  ++E+FR ++I   E D   Y  L++ L K+GR++ A 
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F ++    L  ++ TY++++      GQ+D A  LF +M+     P+V+T+  L+   
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDAL 215

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                     +L HKM      PD+   S +V+ L K+
Sbjct: 216 CSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKS 253



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N    + E E A  +Y +++ KG + D   +N L        Q++ A ++F EM+  
Sbjct: 74  ILVN----SGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIK 129

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++ L K G + E+   F  +       +I  Y+ L+D   K G+L++A
Sbjct: 130 GSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMA 189

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  + R      VVTY+I++  L + G++  A  LF  M  +  +P+  T+ TL++G
Sbjct: 190 LGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNG 249

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  ++  +M ++ V  D    + ++  LAK
Sbjct: 250 LGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAK 287



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 3/203 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K  + + A  +++ M+  G KPD++ +N L           +A ++ +EM   G
Sbjct: 316 IMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAG 375

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +T+TY   I  L  +G + E+  +   +    C  D+  Y+ L+D L K G  + A 
Sbjct: 376 FIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAA 435

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D ++Y++ I GL  D ++D+A  LF DM+      +   +  LI   
Sbjct: 436 RLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAA 495

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R  +     +L H   E   MP
Sbjct: 496 HRAGDTELEAQLKH---ESQFMP 515



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 69/150 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ Y +  +   A  +  EM+  G  P+   +N+L   L    QV+ AF + +EM+  
Sbjct: 350 ILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETA 409

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +D L K G    +  LF+ ++    E D  +Y+  IDGL    RL+ A
Sbjct: 410 GCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEA 469

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           L LF  +       D   Y I+I   +  G
Sbjct: 470 LVLFKDMKAVGCPVDKAMYRILIRAAHRAG 499



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 69/166 (41%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L  EM  +G      T    I    +     ++ +LF       C   + A++ LID L 
Sbjct: 17  LLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV 76

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
            SG  E A  ++  L +     D   Y+++I      GQ+D A ++F +M+     P+  
Sbjct: 77  NSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEY 136

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T+G L++   +     +       M E+ + P+    ++++D   K
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK 182


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+   IE    + +EM  KG  PD V +NTL  G  ++    +A  L  EM R+
Sbjct: 278 MVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRN 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TYT  I+ +CK G +  ++E F  + +     +   Y+ LI+G  + G ++ A
Sbjct: 338 GLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEA 397

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  + R      +VTY+ +++G    G+M++A  L   ME   ++P+V+++ T+I G
Sbjct: 398 YRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAG 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  E  +  ++  +M EK V PDA   S ++  L +
Sbjct: 458 FCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCE 495



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK   +  A+  + +M  +G++P+ V + +L  G  +   ++ A++++DEM R G
Sbjct: 349 LINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSG 408

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   ++G C +G + E++ L R +       D+ +YS +I G C+   L+ A 
Sbjct: 409 FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAF 468

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +  D +TYS +I GL    ++++A DLF +M   ++ P+  T+ +LI+G+
Sbjct: 469 QMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGY 528

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + ++ + L  +M +K  +PD    +++++ L K
Sbjct: 529 CKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNK 565



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C +  +E A+ L   M  KG+ PDVV ++T+  G     +++RAF++  EM   G
Sbjct: 419 LLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY+  I GLC+   + E+ +LF+ +       D   Y+ LI+G CK G L  AL
Sbjct: 479 VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEAL 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +   + D VTY+++I+GL    +  +A  L L +  +   PN IT+ TLI   
Sbjct: 539 NLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESC 598

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
             I E   V+ L+     K +M +A  V
Sbjct: 599 SDI-EFKSVVALIKGFCMKGLMNEADQV 625



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 95/181 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C    +E  L  + EM      P+VV +NT+     ++ +++ AFKL   M  +
Sbjct: 208 ILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLE 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + I+GLC+ G I E+  +   +       D   Y+ L++G CK G    A
Sbjct: 268 GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + R  L  DVVTY+ +I+ +   G +++A + F  M    + PN +T+ +LI+G
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLING 387

Query: 181 F 181
           F
Sbjct: 388 F 388



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 101/200 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  +Y EM++ G+  +V  +N L  G      +E   + F+EM+R+    +  TY   I 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             CK   I E+ +L R++ +   E ++  Y+ +I+GLC+ GR+E    +   + R     
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAP 306

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY+ +++G    G   +A  L  +M  N + P+V+T+ +LI+   +    ++ +E  
Sbjct: 307 DGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFF 366

Query: 195 HKMKEKNVMPDASIVSIVVD 214
            +M  + + P+    + +++
Sbjct: 367 DQMHVRGLRPNGVTYTSLIN 386



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 105/208 (50%), Gaps = 1/208 (0%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQRDGVAADTRTYT 70
           IE ALN+       G  P V+ +N +   +    + V  A K++ EM   GV+ +  +Y 
Sbjct: 148 IEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYN 207

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I G C  G +   +  F  +   +C  ++  Y+ +I   CK  R++ A +L  S+   
Sbjct: 208 ILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLE 267

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            L  +++TY+++I+GL   G++++   +  +M+    AP+ +T+ TL++G+ ++    + 
Sbjct: 268 GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQA 327

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + L  +M    + PD    + +++ + K
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCK 355



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 15/192 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ + +  A +L+ EML+K + PD   + +L  G  +   +  A  L DEM + G
Sbjct: 489 LIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKG 548

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL--------------RILKC-ELDIQAYSC 106
              DT TY + I+GL K     E+  L   L               I  C +++ ++   
Sbjct: 549 FLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVA 608

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI G C  G +  A ++F S+ +     +   Y+++IHG   DG + KAH L+ +M +  
Sbjct: 609 LIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFG 668

Query: 167 VAPNVITFGTLI 178
             P+ +T   L+
Sbjct: 669 FIPHTVTIIALV 680



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 23/225 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-----FDE 56
           LINGYCK  ++  ALNL+ EM+ KG  PD V +N L  GL +  +   A +L     +DE
Sbjct: 524 LINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDE 583

Query: 57  MQRDGVAADT----------RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
              +G+  DT          ++    I G C  G + E+ ++F ++     + +   Y+ 
Sbjct: 584 SIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNV 643

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +I G C+ G +  A +L+  +     +   VT   ++  LY++G MD+  +L +    + 
Sbjct: 644 IIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEG-MDEQLNLVI---RDI 699

Query: 167 VAPNVITFGTLIHGFIRINEPS----KVIELLHKMKEKNVMPDAS 207
           +    ++   L    ++IN        V  LL +M +   +P  +
Sbjct: 700 LRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPSGA 744


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C   ++EG   L  EM  +GI+PD+  +N L  GL  + +++ A KL+DE +  G
Sbjct: 529 LILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASG 588

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ++  TY I ++G CK   I +   LF  L   K EL+   Y+ +I   C++G +  AL
Sbjct: 589 LISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAAL 648

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  ++    ++ +  TYS +IHG+ N G ++ A  L  +M +    PNV+ +  LI G+
Sbjct: 649 QLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGY 708

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++ +         +M   N+ P+    ++++D   K
Sbjct: 709 CKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCK 745



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 113/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ GYCK   IE   NL++E+LSK ++ + +++N +     +   V  A +L + M+  
Sbjct: 598 IMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSK 657

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I G+C  G + ++  L   +R      ++  Y+ LI G CK G+++ A
Sbjct: 658 GILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTA 717

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              +  +    +  +  TY++MI G    G M+KA++L + M+E+ + P+V+T+  L +G
Sbjct: 718 ESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNG 777

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F + N+     ++  +M  + +  D    + +V
Sbjct: 778 FCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 6/240 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   ++  A  +  EML +G+  D + +N L +G     +VE  F+L +EM + G
Sbjct: 494 LIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRG 553

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + GLC  G + ++++L+   +      +I  Y  +++G CK+ R+E   
Sbjct: 554 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 613

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ L    +  + + Y+I+I     +G +  A  L  +M+   + PN  T+ +LIHG 
Sbjct: 614 NLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGV 673

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK------NEISLNSLPSFTVHERQ 235
             I        L+ +M+++  +P+    + ++    K       E +   + SF +H  +
Sbjct: 674 CNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNK 733



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 94/188 (50%), Gaps = 3/188 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I  +C+N  +  AL L   M SKGI P+   +++L  G+  I  VE A  L DEM+++
Sbjct: 633 IIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKE 692

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   YT  I G CK G +  +   +  +       +   Y+ +IDG CK G +E A
Sbjct: 693 GFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKA 752

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +V DVVTY+++ +G      MD A  +   M    +  + IT+ TL+HG
Sbjct: 753 NNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812

Query: 181 FIRINEPS 188
           +   N P+
Sbjct: 813 W---NPPT 817



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N     A++++  +  KG  P +   N L   L + ++ E+  ++F  M  +G   D  
Sbjct: 186 RNLGFSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMS-EGACPDVF 244

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           ++T  I+ LCK G +  ++ELF  +  L    ++  Y+C+I+GLC++GRL+ A EL   +
Sbjct: 245 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM 304

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  ++ TY  +I+GL      DK + +  +M  +   PNV+ F  LI G+ ++   
Sbjct: 305 TVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNI 364

Query: 188 SKVIELLHKMKEKNVMPDA 206
              +++   M  KN+ P +
Sbjct: 365 EGALKIKDVMISKNITPTS 383



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 100/213 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G CK+ +   A  L+  +L KG     V  N L  GL    ++  A ++  EM   
Sbjct: 458 MLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLER 517

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G C  G +     L   +     + DI  Y+ L+ GLC  G+L+ A
Sbjct: 518 GLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDA 577

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L+       L++++ TY IM+ G     +++   +LF ++    +  N I +  +I  
Sbjct: 578 IKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKA 637

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +    +  ++LL  MK K ++P+ +  S ++
Sbjct: 638 HCQNGNVAAALQLLENMKSKGILPNCATYSSLI 670



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 1/169 (0%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A  +F  + R G     +T    +  L K     +  E+FR +    C  D+ +++ +I+
Sbjct: 193 AVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACP-DVFSFTNVIN 251

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
            LCK G++E A+ELF  + +  +  +VVTY+ +I+GL  +G++D A +L   M    V P
Sbjct: 252 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQP 311

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           N+ T+G LI+G I++N   KV  +L +M      P+  + + ++D   K
Sbjct: 312 NLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCK 360



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK      A      MLS+  +P  ++   L  GL +  +   A +L+  +   G
Sbjct: 424 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 483

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A   T    I GLC  G + E+  + + +      +D   Y+ LI G C  G++E   
Sbjct: 484 SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCF 543

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  D+ TY+ ++ GL N G++D A  L+ + + + +  N+ T+G ++ G+
Sbjct: 544 RLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGY 603

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N    V  L +++  K +  ++ + +I++    +N
Sbjct: 604 CKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQN 641



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK  ++E A+ L+ +M   GI P+VV +N +  GL +  +++ AF+L ++M   G
Sbjct: 249 VINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKG 308

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + +TY   I+GL K  +  +   +   +       ++  ++ LIDG CK G +E AL
Sbjct: 309 VQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGAL 368

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +  + +    V  YS+M  G     Q++ A +   ++  + ++ +     +++H 
Sbjct: 369 KIKDVMISKNITPTSVTLYSLM-QGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHW 427

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +             M  +N  P   +++++V  L K+
Sbjct: 428 LCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKD 466



 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
              A+++F+ L R      + T + ++  L    + +K  ++F  M E A  P+V +F  
Sbjct: 190 FSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGA-CPDVFSFTN 248

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +I+   +  +    IEL  KM++  + P+    + +++ L +N
Sbjct: 249 VINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQN 291


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK--PDVVIHNTLF-IGLFEIHQVERAFKLFDEMQ 58
           +I+G CK+  +E A  L  EM+ +G K  PD+V +NTL   G+ +   VE A ++ D M+
Sbjct: 138 VISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMK 197

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G A D  TY   I  LC  G +VE+ E+ +T+    C  D+  ++ L+DG CK+G L 
Sbjct: 198 LAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLP 254

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            ALE+   + R  ++ DV+TY+I+++GL   GQ+  A  L  ++      P+VI + +L+
Sbjct: 255 RALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLV 314

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            G  +  E  +  +L+ +M  + ++ +   +++V  L   N
Sbjct: 315 DGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYN 355



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK  +   AL     +    + PDV I N L  GLF+    ++A KLF+ M+  
Sbjct: 67  ILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESS 126

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLID-GLCKSGRL 117
            V  D  TY   I GLCK+G + ++ EL   +  R  K   DI  Y+ LI+ G+CK G +
Sbjct: 127 RVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDV 186

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           E ALE+   +       DV+TY+ +IH L   G++ +A ++   M   + +P+++TF TL
Sbjct: 187 EEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTL 243

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + GF +     + +E+L +M  +N++PD    +I+V+ L +
Sbjct: 244 LDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCR 284



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 9/214 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG C+  +++ A  L  E++ +G  PDV+ + +L  GL +  ++E A KL  EM   
Sbjct: 277 ILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAR 336

Query: 61  GVAADTR---------TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
            + A+           TY I + GL K+G I ++V L   L       D+  Y+ LIDGL
Sbjct: 337 EILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGL 396

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           CK+ R+  A +L   +       + VT   ++ GL   G++D A  L ++M     APNV
Sbjct: 397 CKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNV 456

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           + + +LI G  + +       +L  M+ + V  D
Sbjct: 457 VVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALD 490



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 9/229 (3%)

Query: 2   LINGYCKNKEIE---------GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK 52
           L++G CK+ EIE          A  + +EM+S  + P +  +N +  GL +   + +A  
Sbjct: 313 LVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVS 372

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L  ++   G   D  TY   IDGLCK   + E+ +L   +  L C  +      ++ GLC
Sbjct: 373 LISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLC 432

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           + GR++ A  L   + R     +VV Y+ +I GL    +MD A  +   M    VA +  
Sbjct: 433 RVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDF 492

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +  LI   I     ++ + +  +M  +  +PD S    + +    N +
Sbjct: 493 AYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSV 541



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 50  AFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           A + FD   ++DG   D  +Y   +D L K+G+   + ++++ L    C  ++  +  LI
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILI 69

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            G CK+G+   ALE   +L    +  DV  ++ +IHGL+ DG  D+A  LF +ME + V 
Sbjct: 70  RGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVN 129

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           P++ T+ T+I G  +     K  ELL +M  +       IV+
Sbjct: 130 PDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVT 171



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 3/183 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G K DV  +N L   L +     R  K++ ++   G + +  T+ I I G CK G    +
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           +E  R L       D+  ++ LI GL K G  + A++LF ++    +  D+ TY+ +I G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISG 141

Query: 146 LYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLIH-GFIRINEPSKVIELLHKMKEKNV 202
           L   G ++KA +L  +M       AP+++T+ TLI+ G  +  +  + +E+L  MK    
Sbjct: 142 LCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGP 201

Query: 203 MPD 205
            PD
Sbjct: 202 APD 204



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 2/178 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G  K+  I  A++L S+++++G  PDVV +NTL  GL + ++V  A  L DEM   
Sbjct: 356 IVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASL 415

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T    + GLC+ G + ++  L   +   +   ++  Y+ LIDGLCKS R++ A
Sbjct: 416 GCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDA 475

Query: 121 LELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             +  ++ RG  VA D   Y  +I  + + G++ +A  ++ +M      P+  T  TL
Sbjct: 476 CVVLDAM-RGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D+ +Y+ L+D L KSG      +++  L       ++VT+ I+I G    GQ  +A +  
Sbjct: 26  DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFL 85

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             ++E +VAP+V  F  LIHG  +   P + ++L   M+   V PD    + V+  L K+
Sbjct: 86  RALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKS 145


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 1/242 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   CK ++ E    L + M   G+ PD++ + TL   L +   +  A +LFDEM   
Sbjct: 154 ILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVR 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV  D   Y I IDG  + G  V++ E++ R L        ++ Y+ +I+GLCK G+L+ 
Sbjct: 214 GVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDE 273

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ++E+++ + +     D+ T+S MIHGL   G  + A  +F +M E+ ++P+V T+  ++ 
Sbjct: 274 SMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLS 333

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
           G  R  + +K  EL + M + N     S   ++  LL   ++         +HER  + D
Sbjct: 334 GLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKAD 393

Query: 240 ES 241
            +
Sbjct: 394 ST 395



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 34/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           +I+G  K      A  ++ EM+  G+ PDV  +N +  GLF   ++ + F+L++ M ++ 
Sbjct: 296 MIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNN 355

Query: 61  ---------------------------------GVAADTRTYTIFIDGLCKNGYIVESVE 87
                                            G+ AD+ TY + I+GLCKNGY+ +++ 
Sbjct: 356 CCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALR 415

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +         +LD  AYS ++ GLCK G LE A+EL H + +     +   ++ +I+G  
Sbjct: 416 ILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYV 475

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
              ++++A  +  +M+    AP V+++ T+I+G  +    S     L +M E+ + PD  
Sbjct: 476 RAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMI 535

Query: 208 IVSIVVDLLAKNE 220
             S+++D L + E
Sbjct: 536 TYSLLIDGLCRGE 548



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 118/212 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY +  ++E A+++  EM SK   P VV +NT+  GL +  +   A+    EM  +G
Sbjct: 470 LINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++ IDGLC+   +  ++ L+      + + D+Q ++ +I GLC + ++++AL
Sbjct: 530 LKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +   V D+VT++ ++ GLY  G   +A  ++  + E  + P++I++     G 
Sbjct: 590 EIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                 S  IE L+   ++ ++P+A   +++V
Sbjct: 650 CSCARVSDAIEFLYDALDRGILPNAPTWNVLV 681



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 111/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G   NK++E A+  +  +  +G+K D   +  L  GL +   + +A ++ +E + +
Sbjct: 364 MLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENE 423

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT  Y+  + GLCK G + ++VEL   ++  + +L+   ++ LI+G  ++ +LE A
Sbjct: 424 GADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEA 483

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   +        VV+Y+ +I+GL    +   A+    +M E  + P++IT+  LI G
Sbjct: 484 ISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDG 543

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             R  +    + L H+   K + PD  + +I++
Sbjct: 544 LCRGEKVDMALNLWHQCINKRLKPDLQMHNIII 576



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CKN  +  AL +  E  ++G   D   ++++  GL +   +E+A +L  +M+++
Sbjct: 399 LLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKN 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               ++  +   I+G  +   + E++ + R ++   C   + +Y+ +I+GLCK+ R   A
Sbjct: 459 RRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDA 518

Query: 121 -LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L L   L  G L  D++TYS++I GL    ++D A +L+       + P++     +IH
Sbjct: 519 YLSLKEMLEEG-LKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIH 577

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G     +    +E+  +M++ N +PD    + +++ L K
Sbjct: 578 GLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYK 616



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 4/219 (1%)

Query: 3   INGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           I  Y K    + ALNL+  M+   G  P +   N++     E +Q   A   F   Q  G
Sbjct: 85  IKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAG 144

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ + +TY I I   CK     +   L   +       DI +Y  LI+ L KSG L  A+
Sbjct: 145 MSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAV 204

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIH 179
           ELF  +  RGV   DV+ Y+I+I G    G   KA++++   + E++V P+V T+  +I+
Sbjct: 205 ELFDEMSVRGV-NPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMIN 263

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  ++ +  + +E+ ++MK+    PD    S ++  L+K
Sbjct: 264 GLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSK 302



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 94/152 (61%), Gaps = 6/152 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C+ ++++ ALNL+ + ++K +KPD+ +HN +  GL    +V+ A ++F +M++ 
Sbjct: 539 LLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQV 598

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
               D  T+   ++GL K G  VE+++++   RIL+  L  DI +Y+    GLC   R+ 
Sbjct: 599 NCVPDLVTHNTIMEGLYKAGDCVEALKIWD--RILEAGLQPDIISYNITFKGLCSCARVS 656

Query: 119 IALE-LFHSLPRGVLVADVVTYSIMIHGLYND 149
            A+E L+ +L RG+L  +  T+++++  + +D
Sbjct: 657 DAIEFLYDALDRGIL-PNAPTWNVLVRAVVDD 687


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 6/244 (2%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI+GYC+  ++   L L  EM +KG  P +V + +L   L +   +E+   LF EM++ 
Sbjct: 1187 VLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKR 1246

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G + + + Y   ID LCK     +++ + + +    C+ DI  ++ LI GLC  G +  A
Sbjct: 1247 GFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 1306

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                    R  L  + ++Y+ +IHG    G++  A DL ++M      P+V+TFG LIHG
Sbjct: 1307 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHG 1366

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
             +   + S+ + +  KM E+ V PD +I ++++  L K  +    LP+       EE+ E
Sbjct: 1367 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM----LPA--AKNILEEMLE 1420

Query: 241  SNVK 244
             NV+
Sbjct: 1421 KNVQ 1424



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 93/183 (50%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI+G CK + +  A N+  EML K ++PD  ++ TL  G      +  A K+F+ M+  
Sbjct: 1397 VLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHK 1456

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  D  +    I G C+ G + E++     +R + C  D   Y+ +I G  K G L  A
Sbjct: 1457 GICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGA 1516

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L     + +     +VVTYS +I+G    G  D A  LF +M+  A++PNV+T+  LI  
Sbjct: 1517 LRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGS 1576

Query: 181  FIR 183
              +
Sbjct: 1577 LFK 1579



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G+C   E+  A +L  EM+ +G  PDVV    L  GL    +V  A  + ++M    
Sbjct: 1328 LIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQ 1387

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            V  D   Y + I GLCK   +  +  +   +     + D   Y+ LIDG  +S  L  A 
Sbjct: 1388 VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDAR 1447

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++F  +    +  D+V+ + MI G    G M +A     +M +    P+  T+ T+I G+
Sbjct: 1448 KIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGY 1507

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +    +  +  L  M ++   P+    S +++   K 
Sbjct: 1508 AKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKT 1545



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%)

Query: 26   GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
            G  P+V   N L   L E  + + A KL+DEM      AD  +  + + GLC    + E 
Sbjct: 1107 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEG 1166

Query: 86   VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ++L        C   +  Y+ LIDG C+ G +   L L   +     +  +VTY  +I+ 
Sbjct: 1167 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINW 1226

Query: 146  LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            L   G ++K   LFL+M +   +PNV  + ++I    +    ++ + +L +M      PD
Sbjct: 1227 LGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPD 1286



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 15/200 (7%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+GY K   + GAL    +M+ +  KP+VV +++L  G  +    + A  LF  MQ + 
Sbjct: 1503 VISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEA 1562

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL---------- 111
            ++ +  TYTI I  L K   ++ +   F T+ +  C  +      L++GL          
Sbjct: 1563 LSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINS 1622

Query: 112  --CKSGRL---EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
              C +  +   +  L +F  L   +       Y+ +I  L     + +A D    M +  
Sbjct: 1623 ICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKG 1682

Query: 167  VAPNVITFGTLIHGFIRINE 186
              PN ITF +L++GF  + +
Sbjct: 1683 YVPNPITFLSLLYGFCSVGK 1702



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 35/180 (19%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I GYC+   +  A+   S M   G  PD   + T+  G  +   +  A +   +M +  
Sbjct: 1468 MIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRK 1527

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +  TY+  I+G CK                                   +G  + A 
Sbjct: 1528 CKPNVVTYSSLINGYCK-----------------------------------TGDTDFAE 1552

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             LF ++    L  +VVTY+I+I  L+   ++ +A   F  M  N  +PN +T   L++G 
Sbjct: 1553 GLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 1612


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+  +++ AL L   M   G  PD V HN +  GL   ++V R  ++   +QRD
Sbjct: 254 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRD 313

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV   +  T+T  I G CK G + +++ ++  +       +   Y+ LI+G  K G L  
Sbjct: 314 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 373

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+E++  + R     DVVT+S +I G    GQ+D A  ++ DM ++ + PNV TF  +IH
Sbjct: 374 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIH 433

Query: 180 GFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDLLAK 218
              + N   + I LL+++    ++ P A I + V+D+L K
Sbjct: 434 SLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCK 473



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 103/196 (52%), Gaps = 1/196 (0%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
            PDV   N +  G+  + QV++A +L + M   G + DT T+ I +DGLC+   +    E
Sbjct: 246 SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHE 305

Query: 88  LFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + R L R   C  ++  ++ +I G CK+G+LE A+ +++ +    ++ + VTY+++I+G 
Sbjct: 306 VLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGY 365

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +  A +++  M      P+V+TF +LI G+ R  +    + +   M +  + P+ 
Sbjct: 366 GKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNV 425

Query: 207 SIVSIVVDLLAKNEIS 222
              SI++  L K   S
Sbjct: 426 YTFSIIIHSLCKQNRS 441



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  ++E A+ +Y++M++ GI P+ V +N L  G  ++  +  A +++ +M R  
Sbjct: 326 VISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLR 385

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T++  IDG C+ G + +++ ++  +   + + ++  +S +I  LCK  R + A+
Sbjct: 386 CPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAI 445

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L + L  R  +      Y+ +I  L   G++D+A+ +   MEE    P+  T+  LI G
Sbjct: 446 RLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIG 505

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   +  S+ I   H+M E    PD+  V+  +  L K
Sbjct: 506 YCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLK 543



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 1/150 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
           LI+GYC+  +++ AL ++S+M    I+P+V   + +   L + ++ + A +L +E+  R 
Sbjct: 396 LIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRP 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A     Y   ID LCK G + E+  + + +    C  D   Y+ LI G C   R+  A
Sbjct: 456 DIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           +  FH +       D +T +  I  L   G
Sbjct: 516 IMFFHEMVEAGCSPDSITVNCFISCLLKAG 545



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 50  AFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           A +LFD+M    G + D R  +  +        +  S  L        C ++  AY+ L+
Sbjct: 161 ALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLM 220

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             L   GR+   + LF    +  L + DV +++++I G+   GQ+ KA +L   M E   
Sbjct: 221 SSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGC 280

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
           +P+ +T   ++ G  R NE S+  E+L +++   V MP+    + V+    K
Sbjct: 281 SPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCK 332



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I+I+  CK    + A+ L +E+ L   I P   I+N +   L +  +V+ A  +   M+ 
Sbjct: 430 IIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEE 489

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            G   D  TYTI I G C    I E++  F  +    C  D    +C I  L K+G
Sbjct: 490 KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 545


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 40/241 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           +IN  CKNK +  A ++YSEM+ KGI PDVV + TL  G   + +++ AF L        
Sbjct: 204 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKN 263

Query: 54  ------------------------------FDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
                                         F+EM+   +  D  TY   IDGLCKN ++ 
Sbjct: 264 INPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLE 323

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-HSLPRGVLVADVVTYSIM 142
            ++ L + ++    + D+ +Y+ L+DGLCK GRLEIA E F H L +G  + +V  Y++M
Sbjct: 324 RAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHL-NVWPYNVM 382

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I+GL   G   +A DL   ME     PN ITF T+I      +E  K  ++L +M  + +
Sbjct: 383 INGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARGL 442

Query: 203 M 203
           +
Sbjct: 443 L 443



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    I  A ++++ +L +G  PD +  NTL  GL    ++++     D++   
Sbjct: 98  ILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQ 157

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G       L R L     + D+  Y+ +I+ LCK+  L  A
Sbjct: 158 GFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +++  +    +  DVVTY+ +IHG    G+M +A  L  +M+   + P+V TF  LI  
Sbjct: 218 CDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDA 277

Query: 181 FIRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +   V E   L  +MK KN++PD    + ++D L KN 
Sbjct: 278 LGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNH 320



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   KNK     ++L+ +    GI PD+   + L         +  AF +F  + + G
Sbjct: 64  ILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRG 123

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T    I GLC  G I +++     +     +LD  +Y  LI+GLCK+G  +   
Sbjct: 124 FHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVA 183

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  DVV Y+ +I+ L  +  +  A D++ +M    ++P+V+T+ TLIHGF
Sbjct: 184 RLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGF 243

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +  +   LL++MK KN+ PD    S+++D L K
Sbjct: 244 CIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGK 280



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 76/179 (42%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           + H    A   F+ M        T  +   +  L KN      + LF+         D+ 
Sbjct: 35  QPHYHHHAVASFNLMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLC 94

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             S LI+  C    + +A  +F ++ +     D +T + +I GL   G++ K       +
Sbjct: 95  TLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQV 154

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                  + +++GTLI+G  +  E   V  LL K++  +V PD  + + +++ L KN++
Sbjct: 155 VAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKL 213



 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK      A++L S+M  KG  P+ +   T+   L E  + ++A K+  EM   
Sbjct: 381 VMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIAR 440

Query: 61  GV 62
           G+
Sbjct: 441 GL 442


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+  +I+ AL L+ +M   G  PDV  +  L     E+ +   A K F+EM  +G
Sbjct: 266 LIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT+ ID  CK G + E +E+  T+        +  ++ LIDG CK G +E A+
Sbjct: 326 IEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAI 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  S+    +  +  TY+ +I G      MD+A  L   M EN ++PN++T+ TLIHG 
Sbjct: 386 CVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGL 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +         L H M +   +PD       +D L K
Sbjct: 446 CKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCK 482



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 112/220 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK  E+  A  ++  M  +G   + V +  L  G  E+ +++ A +LF +M+ DG
Sbjct: 231 LILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDG 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT+ +   C+ G   E+++ F  +     E ++  Y+ LID  CK G+++  +
Sbjct: 291 CFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGM 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+  ++    LV+ VV ++ +I G    G M+ A  +   M+ N V PN  T+  LI GF
Sbjct: 351 EMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGF 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            R     + + LL+KM E  + P+    + ++  L K  +
Sbjct: 411 CRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARV 450



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 35/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+ K ++ A+ L ++M    + P++V +NTL  GL +   V+ A++L   M +DG
Sbjct: 406 LICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D RT+  FID LCK G + ++ ++F +L+    E +   Y+ LIDG CK+ +   A 
Sbjct: 466 FVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAH 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL----------------------- 158
            LF  +       + +T+++++ GL  +G+++ A  L                       
Sbjct: 526 LLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEI 585

Query: 159 -----------FLD-MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                      FLD M  +   PNV+T+   I  + R     +  E++ K+KE+ ++ D+
Sbjct: 586 LRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDS 645

Query: 207 SIVSIVVD 214
            I  ++V+
Sbjct: 646 FIYDVLVN 653



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 104/205 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N +CK   +  A   +  ++  G   D   + +L +G  +IH++  A+K+F+ M ++G
Sbjct: 196 MVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +YT  I G C+ G I E++ELF  ++   C  D+  Y+ L+   C+ G+   AL
Sbjct: 256 CLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEAL 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  +    +  +V TY+++I      G+MD+  ++   M E  +  +V+ F  LI G+
Sbjct: 316 KFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGY 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +       I +L  MK   V P++
Sbjct: 376 CKRGMMEDAICVLDSMKLNKVCPNS 400



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 104/201 (51%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L+ +ML+ G++P+++  NT+     +I  V  A   F  + + G   D+ TYT  I G C
Sbjct: 177 LFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYC 236

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K   + ++ ++F  +    C  +  +Y+ LI G C+ G+++ ALELF  +       DV 
Sbjct: 237 KIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVP 296

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY++++      G+  +A   F +M EN + PNV T+  LI  F ++ +  + +E+L  M
Sbjct: 297 TYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTM 356

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            EK ++      + ++D   K
Sbjct: 357 LEKGLVSSVVPFNALIDGYCK 377



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +CK  +++  + + S ML KG+   VV  N L  G  +   +E A  + D M+ +
Sbjct: 335 VLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLN 394

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  ++RTY   I G C+   +  ++ L   +   K   ++  Y+ LI GLCK+  ++ A
Sbjct: 395 KVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSA 454

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L H + +   V D  T+   I  L   G++++AH +F  ++E     N   +  LI G
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDG 514

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  + S    L  +M  +   P++   ++++D L K
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRK 552



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 94/189 (49%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
            V  +N LF+ L     ++    LF +M  DGV  +  ++   ++  CK G +V +   F
Sbjct: 154 SVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYF 213

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             L       D   Y+ LI G CK   L  A ++F  +P+   + + V+Y+ +IHG    
Sbjct: 214 CGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEV 273

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++D+A +LF  M+E+   P+V T+  L+  F  + + ++ ++   +M E  + P+    
Sbjct: 274 GKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTY 333

Query: 210 SIVVDLLAK 218
           ++++D   K
Sbjct: 334 TVLIDYFCK 342



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 61/268 (22%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVE------------- 48
           LI+GYCK ++   A  L+  ML +G  P+ +  N L  GL +  +VE             
Sbjct: 511 LIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFD 570

Query: 49  ----------------------RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                 RA    D+M   G   +  TYT FI   C+ G ++E+ 
Sbjct: 571 AKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAE 630

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           E+   ++     LD   Y  L++     G+L+ A  +   +          TYSI++  L
Sbjct: 631 EMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHL 690

Query: 147 ----YNDGQM-----------DKAH-----------DLFLDMEENAVAPNVITFGTLIHG 180
               YN   M           D A+            LF  M E    PNV T+  LI G
Sbjct: 691 IFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKG 750

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
             ++   S    L + MKE  + P  +I
Sbjct: 751 LCKVEHLSLAFRLFNHMKESGISPSENI 778



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK + +  A  L++ M   GI P   IHN+L     ++   E A +L D M    
Sbjct: 747 LIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYN 806

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A   +Y + + GL + G   ++ E+FR+L       D   +  L+DGL + G ++   
Sbjct: 807 HLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECS 866

Query: 122 EL 123
           +L
Sbjct: 867 QL 868



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 3/159 (1%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           +++I   E    LF++M   G   +  TY+  I GLCK  ++  +  LF  ++       
Sbjct: 716 IWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPS 775

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
              ++ L+   CK G  E AL L  S+     +A + +Y +++ GL+  G  +KA ++F 
Sbjct: 776 ENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFR 835

Query: 161 DMEENAVAPNVITFGTLIHGFIR---INEPSKVIELLHK 196
            +       + + +  L+ G +R   ++E S++ +++ K
Sbjct: 836 SLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEK 874



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/215 (18%), Positives = 93/215 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+  CK  ++E A  ++  +  K  + +  ++  L  G  +  +   A  LF  M  +G
Sbjct: 476 FIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEG 535

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++ T+ + +DGL K G + +++ L   +     +  +  Y+ LI+ + +    + A 
Sbjct: 536 CFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRAN 595

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +       +VVTY+  I      G++ +A ++ + ++E  +  +   +  L++ +
Sbjct: 596 MFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAY 655

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             I +      +L +M +    P     SI++  L
Sbjct: 656 GCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHL 690


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGYCKN  IE A +L+ +M SKG+ P +V ++T+  GLF+  +   A +L+  M + G
Sbjct: 559 MINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY I + GLC+N    +++ +F+ L ++   L+ + ++ +ID L K GR + A 
Sbjct: 619 IKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAK 678

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    LV +VVTY +M+  L   G +++  DLFL +E+N    N      L+   
Sbjct: 679 DLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKL 738

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA--KNEISLNSLP 227
           ++  E  K    L K+ E N   +AS    +V L++  K +  +N++P
Sbjct: 739 LQKGEVRKAGVYLSKIDENNFSLEASTAESLVLLVSSGKYDQHINAIP 786



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 111/216 (51%), Gaps = 1/216 (0%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +ING  +  ++++ A +L+ +ML +G+ PDVV +N++   L +   +++A  +   M ++
Sbjct: 208 VINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKN 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   + G C +G   +++ +F+ +     E D+  Y+ L+  LCK+GR   A
Sbjct: 268 GAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F S+ +     +  TY  ++HG   +G + K H L   M  N + P+   F  LI  
Sbjct: 328 RKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGT 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + +  +    + L  KM+ + + PD     IV+D L
Sbjct: 388 YTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 115/229 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  C   +++ A+  +  ++S+G+ PD V+   L  GL    + ++A +L  EM   
Sbjct: 418 IVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGR 477

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   +   ++ LCK G +  +  +F  +  +  + D+  Y+ LIDG C  G+++ A
Sbjct: 478 GICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEA 537

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  + VTY+ MI+G   +G+++ A  LF  M    V P ++T+ T++ G
Sbjct: 538 AKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQG 597

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +    +   EL   M +  +  D    +I++  L +N  + ++L  F
Sbjct: 598 LFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIF 646



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 8/242 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-----SKGIKPDVVIHNTLFIGLF-EIHQVERAFKLF 54
           IL+ G C     + AL+L   M+       G  PDVV +NT+  GL  E  Q++ A+ LF
Sbjct: 167 ILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLF 226

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVES-VELFRTLRILKCELDIQAYSCLIDGLCK 113
           D+M   G++ D  TY   I  L K   + ++ V L R ++       I  ++ L+ G C 
Sbjct: 227 DQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRI-THNSLLHGYCS 285

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           SG+   A+ +F  + R  +  DV TY+ ++  L  +G+  +A  +F  M +    PN  T
Sbjct: 286 SGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSAT 345

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
           +GTL+HG+       K+  LL  M    + PD  I +I++    K+    +++  F+   
Sbjct: 346 YGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMR 405

Query: 234 RQ 235
           RQ
Sbjct: 406 RQ 407



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC + +   A+ ++  M   G++PDV  +NTL   L +  +   A K+FD M + G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++ TY   + G    G +V+   L   +     + D   ++ LI    K G+++ A+
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAM 398

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R  L  D VTY I++  L   G++D A   F  +    + P+ + F  LIHG 
Sbjct: 399 LLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGL 458

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++  K  EL  +M  + + P+    + +++ L K
Sbjct: 459 CARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCK 495



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 104/201 (51%), Gaps = 10/201 (4%)

Query: 15  ALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           A++L+  M+      + P+++ ++ +      +  ++ AF     + R G  A+  T++ 
Sbjct: 72  AISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSP 131

Query: 72  FIDGLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL--- 127
            +  LC      E++++  R + +L C  ++ +Y+ L+ GLC   R + AL L H++   
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191

Query: 128 --PRGVLVADVVTYSIMIHGLYNDG-QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
              RG    DVV+Y+ +I+GL  +G Q+D A+ LF  M +  ++P+V+T+ ++I    + 
Sbjct: 192 DDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKA 251

Query: 185 NEPSKVIELLHKMKEKNVMPD 205
               K   +L +M +   MP+
Sbjct: 252 RAMDKAAVVLVRMVKNGAMPN 272



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 1/211 (0%)

Query: 5   GY-CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
           GY CKN     A  ++  M+ +G KP+   + TL  G      + +   L D M R+G+ 
Sbjct: 316 GYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQ 375

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
            D   + I I    K+G + +++ LF  +R      D   Y  ++D LC  G+++ A+  
Sbjct: 376 PDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQ 435

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           F  L    L  D V +  +IHGL    + DKA +L ++M    + PN I F TL++   +
Sbjct: 436 FGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCK 495

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               ++   +   M   +V  D    + ++D
Sbjct: 496 EGMVARAKNIFDLMVRVDVQRDVITYNTLID 526



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 36/256 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  CK   +  A N++  M+   ++ DV+ +NTL  G     +V+ A KL + M  DG
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I+G CKNG I ++  LFR +        I  YS ++ GL ++ R   A 
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK 608

Query: 122 ELFHSLPRGVLVADVVTY-----------------------------------SIMIHGL 146
           EL+  + +  +  D+ TY                                   +IMI  L
Sbjct: 609 ELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDAL 668

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+ D+A DLF  +    + PNV+T+  ++   I      ++ +L   +++     ++
Sbjct: 669 LKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANS 728

Query: 207 SIVSIVV-DLLAKNEI 221
            +++ +V  LL K E+
Sbjct: 729 RMLNALVGKLLQKGEV 744


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 119/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C NK+++ A     EM+ KG+KPD   ++ L  GL  +++VE A + + + +R+G
Sbjct: 538 LISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNG 597

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++ IDG CK     E  +LF  +     + +   Y+ LI   C+SGRL +AL
Sbjct: 598 MIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMAL 657

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  +  TY+ +I G+    ++++A  L  +M    + PNV  +  LI G+
Sbjct: 658 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGY 717

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ +  KV  LL +M  KNV P+    ++++   A++
Sbjct: 718 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 755



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 97/183 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK +  E    L+ EM+S  ++P+ V++N L        ++  A +L ++M+  
Sbjct: 607 VMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHK 666

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ ++ TYT  I G+     + E+  L   +R+   E ++  Y+ LIDG  K G++   
Sbjct: 667 GISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 726

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  + +TY++MI G   DG + +A  L  +M E  + P+ IT+   I+G
Sbjct: 727 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYG 786

Query: 181 FIR 183
           +++
Sbjct: 787 YLK 789



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 104/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK+ + + A  L  EMLS G   +     ++   L   H  + A +   EM    
Sbjct: 398 LIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRN 457

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++      T  I GLCK+G   ++VEL+         +D +  + L+ GLC++G+LE   
Sbjct: 458 MSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGF 517

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     V D V+Y+ +I G   + ++D+A     +M +  + P+  T+  LI G 
Sbjct: 518 RIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGL 577

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +N+  + I+     K   ++PD    S+++D   K E
Sbjct: 578 LNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAE 616



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 1   ILINGYCKNKEIEG---ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LI  YC   + +G   AL+++  + +KG+ P     N L   L    + ++  + F  +
Sbjct: 185 LLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVV 244

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            + GV+ D   +T  I+  CK G + E++ELF  +       ++  Y+ +IDGL  SGR 
Sbjct: 245 CK-GVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRY 303

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A      +    +   ++TYSI++ GL    ++  A+ +  +M E    PNVI +  L
Sbjct: 304 DEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNL 363

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I   I     +K IE+   M  K +   +S  + ++    K+
Sbjct: 364 IDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKS 405



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 96/202 (47%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C +   + AL    EML + + P   +  TL  GL +  +  +A +L+ +    G   DT
Sbjct: 438 CSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDT 497

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           +T    + GLC+ G + E   + + +      +D  +Y+ LI G C + +L+ A      
Sbjct: 498 KTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDE 557

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +  L  D  TYSI+I GL N  ++++A   + D + N + P+V T+  +I G  +   
Sbjct: 558 MVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAER 617

Query: 187 PSKVIELLHKMKEKNVMPDASI 208
             +  +L  +M   N+ P+  +
Sbjct: 618 TEEGQKLFDEMMSNNLQPNTVV 639



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC++  +  AL L  +M  KGI P+   + +L  G+  I +VE A  L +EM+ +G
Sbjct: 643 LIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEG 702

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDG  K G +V+   L R +       +   Y+ +I G  + G +  A 
Sbjct: 703 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 762

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG---QMDKAHDLFLDMEENAVA 168
            L H +    +V D +TY   I+G    G   Q  K  D     EEN  A
Sbjct: 763 RLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFKGSD-----EENYAA 807



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 35/239 (14%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           IN +CK  ++E A+ L+S+M   G+ P+VV +NT+  GL    + + AF   ++M   GV
Sbjct: 259 INAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGV 318

Query: 63  AADTRTYTIFIDGLCK----------------NGY-------------IVESVELFRTLR 93
                TY+I + GL K                 G+             ++E+  L + + 
Sbjct: 319 EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIE 378

Query: 94  ILKC------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           I          L    Y+ LI G CKSG+ +IA  L   +       +  +++ +I  L 
Sbjct: 379 IKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLC 438

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +    D A     +M    ++P      TLI G  +  + SK +EL  K   K  + D 
Sbjct: 439 SHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDT 497


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK++ I  AL L+S + S+GI  DVV +N+L  G   + Q   A +L   M R  
Sbjct: 201 VIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGN 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +D LCK G IVE+  +F  +     + DI  Y+ L++G C S  +  A 
Sbjct: 261 INPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEAR 320

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ + +  L  DV+ Y+++I+G      +D+A  LF ++    + PN+ T+ +LI G 
Sbjct: 321 ELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGL 380

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++   S V EL+ +M ++   PD    +I +D   K++
Sbjct: 381 CKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSK 419



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C N  +  A+    ++++KG   D   + +L  GL +  Q   A +L  +M+ D 
Sbjct: 131 LINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDL 190

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  IDGLCK+  I +++ LF  +      +D+ AY+ LI G C  G+   A 
Sbjct: 191 VRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREAT 250

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + RG +  D  T++I++  L  +G++ +A  +F  M +    P+++T+  L+ GF
Sbjct: 251 RLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGF 310

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              N  S+  EL ++M ++ + PD    +++++   K
Sbjct: 311 CLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCK 347



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   ++ A+ L+ E+  K + P++  +N+L  GL ++ ++    +L DEM   
Sbjct: 340 VLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDR 399

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY IF+D  CK+    +++ LFR + +     D   Y  +++  CK  +L+IA
Sbjct: 400 GQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI-VQGIWPDFYMYDVIVENFCKGEKLKIA 458

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    L       +V TY+IMI+ L  D   D+A  L   M++N   P+ +TF T+I  
Sbjct: 459 EEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGA 518

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
               NE  K  +L  +M E+ ++ D +
Sbjct: 519 LQERNETDKAEKLRLEMIERGLVNDEA 545



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CKN +   AL L  +M    ++P+++ ++T+  GL +   +  A +LF  +   G
Sbjct: 166 LINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I G C  G   E+  L   +       D   ++ L+D LCK GR+  A 
Sbjct: 226 ILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQ 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +     D+VTY+ ++ G      + +A +LF  M +  + P+V+ +  LI+G+
Sbjct: 286 GVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGY 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   + + L  +++ KN++P+ +  + ++D L K
Sbjct: 346 CKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCK 382



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK   I  A  +++ M+ +G KPD+V +N L  G    + V  A +LF+ M + 
Sbjct: 270 ILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKR 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + I+G CK   + E++ LF+ +R      ++  Y+ LIDGLCK GR+   
Sbjct: 330 GLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCV 389

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +       D+VTY+I +         +KA  LF  + +  + P+   +  ++  
Sbjct: 390 QELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVEN 448

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +     E L  +      P+    +I+++ L K+
Sbjct: 449 FCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKD 487



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 8/209 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC    +  A +L   +L  G +P++V  NTL  G      V +A     ++   
Sbjct: 95  ILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAK 154

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCKNG   ++++L + +       ++  YS +IDGLCK   +  A
Sbjct: 155 GYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADA 214

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF  +  RG+LV DVV Y+ +IHG  + GQ  +A  L   M    + P+  TF  L+ 
Sbjct: 215 LRLFSLVTSRGILV-DVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVD 273

Query: 180 GFI---RINEPSKVIELLHKMKEKNVMPD 205
                 RI E   V  ++ K  EK   PD
Sbjct: 274 ALCKEGRIVEAQGVFAVMMKRGEK---PD 299



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 107/223 (47%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L+S++ SKGI P +     L         +  AF L   + + G   +  T+   I+
Sbjct: 74  AISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLIN 133

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C NG + +++     L      LD  +Y  LI+GLCK+G+   AL+L   +   ++  
Sbjct: 134 GFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRP 193

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +++TYS +I GL  D  +  A  LF  +    +  +V+ + +LIHG   + +  +   LL
Sbjct: 194 NLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLL 253

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
             M   N+ PD    +I+VD L K    + +   F V  ++ E
Sbjct: 254 TMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGE 296



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 85/189 (44%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           + H V+     F+ M R         +   +  + + G+   ++ LF  L        I 
Sbjct: 32  KFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIA 91

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             + LI+  C    L  A  L  ++ +     ++VT++ +I+G   +G + KA    LD+
Sbjct: 92  TLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDL 151

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                  +  ++G+LI+G  +  +    ++LL KM+E  V P+    S V+D L K+ + 
Sbjct: 152 MAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLI 211

Query: 223 LNSLPSFTV 231
            ++L  F++
Sbjct: 212 ADALRLFSL 220


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   +IE AL L++E  +K +KPD+V++N+L  GL     +  A ++ +EM  +G
Sbjct: 356 LINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEG 415

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I I+GLCK G I ++  +     +     D+  ++ LIDG CK  +L+ AL
Sbjct: 416 CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSAL 475

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  DV+TY+ +++GL   G+  + ++ F +M      PN IT+  LI  F
Sbjct: 476 QLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENF 535

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +IN+  +   ++ +M +  ++PDA   + ++    +N
Sbjct: 536 CKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRN 573



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK+  ++ A  L  + + KG  PD V + +L  GL     +ERA +LF+E Q   
Sbjct: 321 IIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKD 380

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EIA 120
           +  D   Y   + GLC+ G I+ ++++   +    C  DI  Y+ +I+GLCK G + + A
Sbjct: 381 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAA 440

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +  ++ +G L  DV T++ +I G     ++D A  L   M    +AP+VIT+ ++++G
Sbjct: 441 VVMNDAIVKGYL-PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNG 499

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +  +  +V E   +M  K   P+A    I  ++L +N   +N L
Sbjct: 500 LCKAGKAKEVNETFEEMILKGCRPNA----ITYNILIENFCKINQL 541



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK   I  A  + ++ + KG  PDV   NTL  G  +  +++ A +L + M   
Sbjct: 425 IIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTY 484

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D  TY   ++GLCK G   E  E F  + +  C  +   Y+ LI+  CK  +LE A
Sbjct: 485 GIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEA 544

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  LV D V+++ +IHG   +G +D A+ LF  ++E   +    TF  LI  
Sbjct: 545 SGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGA 604

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +          ++  +M  K   PD     I+VD L K
Sbjct: 605 YSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCK 642



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK+ +++ A      M+++G  PD   +NT+  G  +   ++ A +L  +    G
Sbjct: 286 LMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKG 345

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLC  G I  ++ELF   +    + D+  Y+ L+ GLC+ G +  AL
Sbjct: 346 FVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHAL 405

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +       D+ TY+I+I+GL   G +  A  +  D       P+V TF TLI G+
Sbjct: 406 QVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGY 465

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +    ++L+ +M    + PD    + V++ L K
Sbjct: 466 CKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCK 502



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  C+  ++  +  L +++L +G+  +    N    GL E  ++E A  L + M    
Sbjct: 217 VLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY- 275

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TY   + GLCK+  + E+ +    +    C  D   Y+ +IDG CKSG L+ A 
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL         V D VTY  +I+GL  +G +++A +LF + +   + P+++ + +L+ G 
Sbjct: 336 ELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGL 395

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R       ++++++M E+   PD    +I+++ L K
Sbjct: 396 CRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCK 432



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 1/212 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A +L+ EML + + PDV   N +   L +   V  +  L  ++ + G++A+  T  I+I 
Sbjct: 195 ARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIR 254

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC++G + E+V L   +       D+  Y+ L+ GLCK  +++ A +    +     + 
Sbjct: 255 GLCEDGRLEEAVALVERMGAYVAP-DVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIP 313

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D  TY+ +I G    G + +A +L  D       P+ +T+ +LI+G     +  + +EL 
Sbjct: 314 DDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELF 373

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           ++ + K++ PD  + + +V  L +  + L++L
Sbjct: 374 NEAQAKDLKPDLVVYNSLVKGLCRQGLILHAL 405



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 6/232 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  + +     + EM+ KG +P+ + +N L     +I+Q+E A  +   M +DG
Sbjct: 496 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDG 555

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++   I G C+NG +  +  LF+ L           ++ LI        +++A 
Sbjct: 556 LVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAE 615

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       D+ TY I++ GL     +D+A+    +M      P++ TFG +++  
Sbjct: 616 KIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLL 675

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
              +  S+ + ++H M    V+P+      VVD +   +    + P   V E
Sbjct: 676 AMNHRVSEAVAIIHIMVRMGVVPE------VVDTILSTDKKEIAAPKILVEE 721



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + +  +C       AL L   +  +G       + T+  GL+       A  LFDEM   
Sbjct: 146 VRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGR 205

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
            V  D  T+   +  LC+ G ++ES  L    ++LK  +    ++C   I GLC+ GRLE
Sbjct: 206 DVFPDVATFNNVLHALCQKGDVMESGALL--AKVLKRGMSANKFTCNIWIRGLCEDGRLE 263

Query: 119 IALELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            A+ L   +  G  VA DVVTY+ ++ GL  D ++ +A      M      P+  T+ T+
Sbjct: 264 EAVALVERM--GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTI 321

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
           I G+ +     +  ELL     K  +PD  +  S++  L A+ +I
Sbjct: 322 IDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDI 366



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 36/252 (14%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I  Y +   +  A++ +  M      P    +N +   L      ++A K++  M   GV
Sbjct: 78  IQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGV 137

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           A D RT+T+ +   C  G    ++ L R+L    C+    AY  ++ GL   G    A  
Sbjct: 138 APDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARH 197

Query: 123 LF-------------------HSLPR-------GVLVADVV---------TYSIMIHGLY 147
           LF                   H+L +       G L+A V+         T +I I GL 
Sbjct: 198 LFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLC 257

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
            DG++++A  L   M    VAP+V+T+ TL+ G  + ++  +  + L +M  +  +PD  
Sbjct: 258 EDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDF 316

Query: 208 IVSIVVDLLAKN 219
             + ++D   K+
Sbjct: 317 TYNTIIDGYCKS 328



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  Y     ++ A  ++ EM+SKG KPD+  +  L  GL +   V+RA+    EM   
Sbjct: 600 ILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISK 659

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           G      T+   ++ L  N  + E+V +
Sbjct: 660 GFVPSMATFGRMLNLLAMNHRVSEAVAI 687


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 17/235 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           LI+ Y K++++  A  +Y  MLSKG  P++V +  L  GL +  ++E+A +++  M++  
Sbjct: 298 LIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKEN 357

Query: 60  -------------DGVAADTR--TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
                        DG + +    TY   +DGLCK   + E+ +L +++ +  CE +   Y
Sbjct: 358 VEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVY 417

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             LIDG CK+G+L+ A E+F ++       +V TYS +I  L+ D ++D A  +   M E
Sbjct: 418 DALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLE 477

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           N+ APNV+ +  +I G  ++ +  +  +L+  M+EK   P+    + ++D   K+
Sbjct: 478 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKS 532



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 21/232 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK-----------------PDVVIHNTLFIGLFEI 44
           LI+G CK  +IE A  +Y  M  + ++                 P+V  +  L  GL + 
Sbjct: 333 LIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKA 392

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD--IQ 102
           +QV+ A  L   M  +G   +   Y   IDG CK G + E+ E+F T+  L+C  D  + 
Sbjct: 393 YQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTM--LECGYDPNVY 450

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            YS LID L K  RL++AL++   +       +VV Y+ MI GL   G+ D+A+ L + M
Sbjct: 451 TYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMM 510

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           EE    PNV+T+  +I GF +     K +ELL +M  K   P+     ++++
Sbjct: 511 EEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLIN 562



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 18/234 (7%)

Query: 5   GY-CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
           GY C   ++E A  L+ EM   GI PDV ++ TL     +   +E+A   FDEM+RDG A
Sbjct: 230 GYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCA 289

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
            +  TYT  I    K+  + ++ E++  +    C  +I  Y+ LIDGLCK+G++E A ++
Sbjct: 290 PNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI 349

Query: 124 FHSLPR-GVLVADV----------------VTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +  + +  V + DV                 TY  ++ GL    Q+ +A DL   M    
Sbjct: 350 YKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEG 409

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             PN + +  LI G  +  +  +  E+   M E    P+    S ++D L K++
Sbjct: 410 CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDK 463



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 113/213 (53%), Gaps = 2/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  +++ ML  G  P+V  +++L   LF+  +++ A K+  +M  + 
Sbjct: 420 LIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENS 479

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  IDGLCK G   E+ +L   +    C  ++  Y+ +IDG  KSGR+E  L
Sbjct: 480 CAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCL 539

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       + VTY ++I+   + G +D+AH L  +M++     +V  +  +I GF
Sbjct: 540 ELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF 599

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R  E    + L  ++ E + +P A +  +++D
Sbjct: 600 NR--EFIASLYLSFEISENDSVPVAPVYRVLID 630



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 1   ILINGYCKNKE-----IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           ILI G C ++E     ++ A   Y EML  G+  + V  +     L  I + E+A+ +  
Sbjct: 152 ILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIR 211

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   G   DT TY+  I  LC    + ++ +LF+ ++      D+  Y+ LID  CK+G
Sbjct: 212 EMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAG 271

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            +E A   F  + R     +VVTY+ +IH      ++ KA++++  M      PN++T+ 
Sbjct: 272 FIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYT 331

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVD 214
            LI G  +  +  K  ++   MK++NV +PD  +   VVD
Sbjct: 332 ALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVD 371



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-----VERAFKLFDE 56
           L++ YC++ +   A  L  +M+  G +P  V++N L  G+    +     ++ A K + E
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGE 177

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   GV  +    + F   LC  G   ++  + R +       D   YS +I  LC + +
Sbjct: 178 MLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASK 237

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +E A +LF  + R  +  DV  Y+ +I      G +++A + F +ME +  APNV+T+  
Sbjct: 238 VEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTA 297

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           LIH +++  + SK  E+   M  K   P+    + ++D L K
Sbjct: 298 LIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 102/198 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ A +L   M  +G +P+ V+++ L  G  +  +++ A ++F  M   G
Sbjct: 385 LVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECG 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  ID L K+  +  ++++   +    C  ++  Y+ +IDGLCK G+ + A 
Sbjct: 445 YDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 504

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       +VVTY+ MI G    G+++K  +L   M     APN +T+  LI+  
Sbjct: 505 KLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHC 564

Query: 182 IRINEPSKVIELLHKMKE 199
                  +  +LL +MK+
Sbjct: 565 CSTGLLDEAHKLLEEMKQ 582



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+    E A++  + M +    P+V+ +  L  G     ++ R  ++   M  +G
Sbjct: 48  MISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEG 107

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS---GR-- 116
                R +   +   C++G    + +L + +    C+     Y+ LI G+C S   G+  
Sbjct: 108 CYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDV 167

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           L++A + +  +    +V + V  S     L   G+ +KA+++  +M      P+  T+  
Sbjct: 168 LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSK 227

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +I      ++  K  +L  +MK   + PD  + + ++D   K
Sbjct: 228 VIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCK 269



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 35/228 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  + + A  L   M  KG  P+VV +  +  G  +  +VE+  +L  +M   G
Sbjct: 490 MIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKG 549

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR--------------------------IL 95
            A +  TY + I+  C  G + E+ +L   ++                           L
Sbjct: 550 CAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYL 609

Query: 96  KCELD-------IQAYSCLIDGLCKSGRLEIALELFHSLP--RGVLVADVVTYSIMIHGL 146
             E+           Y  LID   K+GRLEIALEL   L        A+   +  +I  L
Sbjct: 610 SFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENL 669

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
               + DKA +L+ DM      P +     LI G +R+N   + ++LL
Sbjct: 670 SLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLL 717



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   G   D  T   F   LCK+G   E++ L      +    D   Y+ +I GLC++  
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEKEEFVP---DTVLYTKMISGLCEASL 57

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            E A++    +     + +V+TY I++ G  N  ++ +   +   M      P+   F +
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           L+H + R  + +   +LL KM +    P   + +I++  +  +E
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSE 161


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 121/234 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK+  ++ AL+L+ EM  +GI PD   +  +  GL    +V+ A++LFD+M+  
Sbjct: 201 ILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDS 260

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T    ++G C    + E+  L R        LD++ YSCLI GL ++ R E  
Sbjct: 261 GVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDV 320

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  +    +  DV  Y+IM+ GL   G++  A +L  +M E+ V P+ + +  LI G
Sbjct: 321 QLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKG 380

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
           F  +   S+   L  ++   +  P+    SI++  + +N ++ ++   F   E+
Sbjct: 381 FCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEK 434



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 48/266 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G  +  ++  AL L +EM   G+ PD V +N L  G  ++  +  A  L  E+ R 
Sbjct: 341 IMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRH 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + +TY+I I G+C+NG   ++ E+F  +  L C      ++ LIDGLCK+G+LE A
Sbjct: 401 DCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKA 460

Query: 121 LELFHSL---------------PRGVL---------------------------VAD--- 135
             LF+ +               P  VL                           +AD   
Sbjct: 461 HLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGD 520

Query: 136 ---VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
              + TY+I+++G    G  + A+ LF +M+   ++P+ +T+GTLI+G +R        +
Sbjct: 521 APGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYK 580

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +M++    PDA++   ++  + +
Sbjct: 581 VFDQMEKNGCTPDAAVYRTMMTWMCR 606



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G C++K ++ A  L+ +M   G+ PD V  N L  G   + +V+ AF L    ++D
Sbjct: 236 VVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKD 295

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D R Y+  I GL +     +   L+R +     + D+  Y+ ++ GL ++G++  A
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL + +    +V D V Y+++I G  + G + +A  L L++  +   PNV T+  LI G
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISG 415

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R        E+ ++M++    P A   + ++D L K 
Sbjct: 416 MCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKT 454



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 48/265 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  + K  E    LY +M+   +KPDV ++  +  GL E  +V  A +L +EM   G
Sbjct: 307 LIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESG 366

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT  Y + I G C  G + E+  L   +    C  +++ YS LI G+C++G    A 
Sbjct: 367 VVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQ 426

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME------------------ 163
           E+F+ + +       VT++ +I GL   GQ++KAH LF  ME                  
Sbjct: 427 EIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHV 486

Query: 164 ------------------------------ENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
                                         ++  AP + T+  L++GF ++   +   +L
Sbjct: 487 LDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKL 546

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAK 218
             +M+ K + PD      +++ L +
Sbjct: 547 FREMQFKGLSPDTVTYGTLINGLLR 571



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 98/199 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y+ M+     P+V   + L  GL +   V+ A  LFDEM + G+  D  TY + I 
Sbjct: 180 ALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVIS 239

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC++  + ++  LF  ++      D    + L++G C   R++ A  L     +   V 
Sbjct: 240 GLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVL 299

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DV  YS +I GL+   + +    L+  M E+ V P+V  +  ++ G     +    +ELL
Sbjct: 300 DVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELL 359

Query: 195 HKMKEKNVMPDASIVSIVV 213
           ++M E  V+PD    ++++
Sbjct: 360 NEMTESGVVPDTVCYNVLI 378



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 100/191 (52%), Gaps = 7/191 (3%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ----VERAFKLFDEMQRDGVAADTRT 68
           +  L LY + L       + +HN  F  L +++      ++A + F  M+      D  T
Sbjct: 104 QNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYT 163

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y + +D L +  +++ ++ ++  +  L C  ++  +S LIDGLCKSG ++ AL LF  + 
Sbjct: 164 YNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMT 223

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RIN 185
           +  ++ D  TY ++I GL    ++D A+ LF  M+++ V P+ +T   L++GF    R++
Sbjct: 224 QRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVD 283

Query: 186 EPSKVIELLHK 196
           E   ++ L  K
Sbjct: 284 EAFSLLRLFEK 294



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y K    + A+  +  M      PDV  +N +   L + + +  A  ++  M + 
Sbjct: 131 VLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKL 190

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T++I IDGLCK+G + +++ LF  +       D   Y  +I GLC+S R++ A
Sbjct: 191 NCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDA 250

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D VT + +++G     ++D+A  L    E++    +V  +  LI G
Sbjct: 251 YRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRG 310

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R      V  L  KM E NV PD  + +I++  LA+
Sbjct: 311 LFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAE 348



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 37/259 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG+CK     GA  L+ EM  KG+ PD V + TL  GL    + E A+K+FD+M+++
Sbjct: 529 ILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKN 588

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCE--------------------- 98
           G   D   Y   +  +C+   +  +  L+ + LR ++ +                     
Sbjct: 589 GCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQEVEKAV 648

Query: 99  ------------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+  Y+  + GLC++ R+  AL++F  L    +V        +I+ L
Sbjct: 649 RGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYKVVITPPCCVKLIYFL 708

Query: 147 YNDGQMDKAHDLFL-DMEENAVAPNVITFGTLIHGFIRINEPSK--VIELLHKMKEKNVM 203
             +G +D+A D+FL  +E+  +    +    L     R  E  K   I LL +MK     
Sbjct: 709 LKEGDLDRAIDVFLYTIEKGYLLRRRVANRILTKLVRRKGEMGKDRAIYLLCRMKSVGYD 768

Query: 204 PDASIVSIVVDLLAKNEIS 222
            DA ++     LL ++ I 
Sbjct: 769 LDAHLLPWTKSLLHRHNIQ 787



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++   C +  I  A  +  ++   G  P +  +N L  G  ++     A+KLF EMQ  G
Sbjct: 495 MVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKG 554

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ DT TY   I+GL +     ++ ++F  +    C  D   Y  ++  +C+   L  A 
Sbjct: 555 LSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAF 614

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
            L+    R +   +       I G +   +++KA    L+M+
Sbjct: 615 SLWLKYLRNIRSQEDEAIK-AIEGYFEKQEVEKAVRGLLEMD 655



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           A+  LI    K G  + A+E F S+       DV TY++++  L     +  A  ++  M
Sbjct: 128 AFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRM 187

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +    PNV TF  LI G  +       + L  +M ++ ++PDA    +V+  L +++
Sbjct: 188 MKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSK 245



 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 105 SC--LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           SC  + D L     LE+  +   +L  G +      + ++I      G  DKA + F  M
Sbjct: 93  SCDLITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSM 152

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    P+V T+  ++   I+ N     + +  +M + N +P+ +  SI++D L K+
Sbjct: 153 RDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKS 209


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G      +  A   + EMLSKG++PD   +NT       +  + +AF+L + M  +
Sbjct: 453 ILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLE 512

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+++DT TY I IDGLCK G + ++ +L   +     + D   Y+CLI   C+ G L  A
Sbjct: 513 GISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREA 572

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +    L    VTY++ IH     G +  A+  F  M E  V PN IT+  LIH 
Sbjct: 573 RKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 632

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R           H+M E+ ++P+    ++++D
Sbjct: 633 LCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLID 666



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GYC+  ++E A  L  EM+ +G  PDV  +  L  G      +  A + FDEM   
Sbjct: 418 ILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSK 477

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I      G I ++  L   + +     D   Y+ LIDGLCK+G L  A
Sbjct: 478 GLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDA 537

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L  D +TY+ +IH     G + +A   F DM  + +AP+ +T+   IH 
Sbjct: 538 KDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHA 597

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + R            KM E+ V P+    ++++  L + 
Sbjct: 598 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRT 636



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 92/181 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK   +  A +L  +M+  G++PD + +  L     E   +  A K F +M  D
Sbjct: 523 ILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD 582

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A    TYT+FI   C+ G +  +   FR +     E +   Y+ LI  LC++GR ++A
Sbjct: 583 GLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLA 642

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              FH +    LV +  TY+++I G   +G  + A   + +M +N + P+ +T   L  G
Sbjct: 643 YRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKG 702

Query: 181 F 181
           F
Sbjct: 703 F 703



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G      ++ A +L  EM ++GI P VV +N +  GL +  QVE A   F EM+  G
Sbjct: 314 LITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   ++G CK G + E++ LF  LR       +  Y+ LIDG C+ G LE A 
Sbjct: 374 LQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEAR 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + DV TY+I++ G +N   +  A + F +M    + P+   + T I   
Sbjct: 434 RLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAE 493

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +   +K   L   M  + +  D    +I++D L K 
Sbjct: 494 LTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKT 531



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 104/199 (52%), Gaps = 3/199 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA--DTRTYTIFIDG 75
           +++EML  GI+P +V +NTL     +  + ++   L  EM+  G     +  T+ + I G
Sbjct: 224 VHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITG 283

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + G + E+ E+   +R+ K +     Y+ LI GL   G ++ A +L   +    ++  
Sbjct: 284 LARKGDLEEAAEMVEGMRLSK-KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPT 342

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTY+ MIHGL   GQ++ A   F++M    + P+VIT+ +L++G+ +     + + L  
Sbjct: 343 VVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFG 402

Query: 196 KMKEKNVMPDASIVSIVVD 214
            ++   + P     +I++D
Sbjct: 403 DLRHAGLAPTVLTYNILID 421



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 96/212 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   ++ AL L+ ++   G+ P V+ +N L  G   +  +E A +L +EM   G
Sbjct: 384 LLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG 443

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYTI + G      +  + E F  +     + D  AY+  I      G +  A 
Sbjct: 444 CLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAF 503

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    + +D VTY+I+I GL   G ++ A DL + M  N + P+ IT+  LIH  
Sbjct: 504 RLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAH 563

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  +  +    M    + P A   ++ +
Sbjct: 564 CERGLLREARKFFKDMISDGLAPSAVTYTVFI 595



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I G  +  ++E A  +   M LSK  K     +N L  GL     V++A  L  EM+ 
Sbjct: 279 VVITGLARKGDLEEAAEMVEGMRLSK--KASSFTYNPLITGLLAKGFVKKADDLQLEMEN 336

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G+     TY   I GL ++G +  +   F  +R +  + D+  Y+ L++G CK+G L+ 
Sbjct: 337 EGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKE 396

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL LF  L    L   V+TY+I+I G    G +++A  L  +M E    P+V T+  L+ 
Sbjct: 397 ALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMK 456

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G       +   E   +M  K + PD
Sbjct: 457 GSHNACSLAMAREFFDEMLSKGLQPD 482



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH 45
           +LI+G CK    E A+  Y EM   GI PD + H  LF G  E H
Sbjct: 663 LLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGFDEGH 707


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 118/216 (54%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKE-IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI   CKN+E +E A  L+ EM ++G +PD   + TL  GL ++ ++ +A +L DEM+ 
Sbjct: 160 ILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEE 219

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G++    +YT  I GLC++  + E++EL   + I   E ++  YS L+DGLCKSG    
Sbjct: 220 KGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQ 279

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+EL   + R  L+ ++VTYS +I+GL  +G+  +A ++   M    + P+   +G +I 
Sbjct: 280 AMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIIS 339

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           G        +    + +M    + P+ +  +  V +
Sbjct: 340 GLCAACNYQEAANFIDEMALGGISPNRASWTFHVKM 375



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQRDGVAADTRTYT 70
           ++ A+  Y EM  KGI P VV  N L   L +  + VE AF+LF EM   G   D+ TY 
Sbjct: 136 VKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYG 195

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             I+GLCK G I ++ EL   +        + +Y+ LI GLC+S  L+ A+EL   +   
Sbjct: 196 TLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIIN 255

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +  +V TYS ++ GL   G   +A +L   M    + PN++T+ TLI+G  +  +  + 
Sbjct: 256 GIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREA 315

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLA 217
           +E+L +M+ + + PDA +   ++  L 
Sbjct: 316 VEILDRMRLQGLKPDAGMYGRIISGLC 342



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +  GY +      A+ ++ +M    +KP    + T+F  L E + V+RA   + EM+  G
Sbjct: 91  ICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKG 150

Query: 62  VAADTRTYTIFIDGLCKNGYIVESV-ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     +  I I  LCKN   VES   LFR +    C+ D   Y  LI+GLCK G++  A
Sbjct: 151 IPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQA 210

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L   VV+Y+ +IHGL     +D+A +L  +M  N + PNV T+ +L+ G
Sbjct: 211 KELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDG 270

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    S+ +ELL  M  + ++P+    S +++ L K
Sbjct: 271 LCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCK 308



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 22  MLSKGIKPDVVIHNTLFI----GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ML +  + D  +   +F+    G   +H+   A ++F +M+   V    ++Y    D L 
Sbjct: 72  MLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILV 131

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-LEIALELFHSLPRGVLVADV 136
           +  ++  ++  ++ +R       + + + LI  LCK+   +E A  LF  +P      D 
Sbjct: 132 EENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDS 191

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            TY  +I+GL   G++ +A +L  +MEE  ++P+V+++ +LIHG  + N   + IELL +
Sbjct: 192 YTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEE 251

Query: 197 MKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           M    + P+    S ++D L K+  S  ++    V  R+
Sbjct: 252 MIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRR 290



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   A+ +   M  +G+KPD  ++  +  GL      + A    DEM   G
Sbjct: 302 LINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGG 361

Query: 62  VAADTRTYT-------IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           ++ +  ++T       + + GLC N     + +L+ ++R     ++I  + CL+   CK 
Sbjct: 362 ISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKR 421

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           G L  A  +   +     + D   +++++ GL++  ++ +  +L +
Sbjct: 422 GDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLV 467



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 41/89 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G C N +   A  LY  M ++GI  ++   + L     +   + +A ++ +EM  D
Sbjct: 378 MVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILD 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF 89
           G   D   + + + GL     + E+ EL 
Sbjct: 438 GCIPDEGMWNVLMCGLWDRKKVRETTELL 466



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 35/79 (44%)

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T+  MIH L +  Q   A  +   M++         F T+  G+ R++ P   I + HKM
Sbjct: 52  TFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKM 111

Query: 198 KEKNVMPDASIVSIVVDLL 216
           ++  V P       V D+L
Sbjct: 112 EDFQVKPTQKSYLTVFDIL 130



 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 5/191 (2%)

Query: 33  IHNTLFIGLFEIHQ-VERAFKLFD---EMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           I N+L   L +  + + +   +FD   E   +G   D  T+   I  L        +  +
Sbjct: 13  ITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRPAEGM 72

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              ++   CE+    +  +  G  +  R   A+ +FH +    +     +Y  +   L  
Sbjct: 73  LERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVE 132

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP-SKVIELLHKMKEKNVMPDAS 207
           +  + +A   + +M E  + P V++   LI    +  E       L  +M  +   PD+ 
Sbjct: 133 ENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSY 192

Query: 208 IVSIVVDLLAK 218
               +++ L K
Sbjct: 193 TYGTLINGLCK 203


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK   I  A+ ++ EM  KG KPDV   N+L  GL E+ +++ A  L  +M  +G
Sbjct: 459 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 518

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TY   I+   + G I E+ +L   +      LD   Y+ LI GLC++G ++ A 
Sbjct: 519 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKAR 578

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R  LV   ++ +I+I+GL   G +++A +   +M      P+++TF +LI+G 
Sbjct: 579 SLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 638

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R       + +  K++ + + PD    + ++  L K
Sbjct: 639 CRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCK 675



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY K   +  AL +  +M +KG KP+V  +  L  G  ++ +++ A+ L +EM  DG
Sbjct: 389 LIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADG 448

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  +   I   CK   I E+VE+FR +    C+ D+  ++ LI GLC+   ++ AL
Sbjct: 449 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 508

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +VA+ VTY+ +I+     G++ +A  L  +M       + IT+ +LI G 
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGL 568

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  E  K   L  KM    ++P +   +I+++ L ++
Sbjct: 569 CRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRS 606



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 16/243 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++   C   E++ AL++  +M   G  P+ VI+ TL   L + ++V  A +L +EM   
Sbjct: 216 VVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM 275

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   I GLCK   I E+ ++   + I     D   Y  L++GLCK GR++ A
Sbjct: 276 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAA 335

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
            +LF+ +P+       V ++ +IHG    G++D A  +  DM  +  + P+V T+ +LI+
Sbjct: 336 KDLFYRIPK----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 391

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-----------NEISLNSLPS 228
           G+ +       +E+L  M+ K   P+    +I+VD   K           NE+S + L  
Sbjct: 392 GYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKP 451

Query: 229 FTV 231
            TV
Sbjct: 452 NTV 454



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G+  +  ++ A  + S+M+ S GI PDV  +N+L  G ++   V  A ++  +M+  
Sbjct: 353 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNK 412

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +YTI +DG CK G I E+  L   +     + +   ++CLI   CK  R+  A
Sbjct: 413 GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 472

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+F  +PR     DV T++ +I GL    ++  A  L  DM    V  N +T+ TLI+ 
Sbjct: 473 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 181 FIRINEPSKVIELLHKM 197
           F+R  E  +  +L+++M
Sbjct: 533 FLRRGEIKEARKLVNEM 549



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 100/181 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN + +  EI+ A  L +EM+ +G   D + +N+L  GL    +V++A  LF++M RDG
Sbjct: 529 LINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   + +  I I+GLC++G + E+VE  + + +     DI  ++ LI+GLC++GR+E  L
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 648

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L    +  D VTY+ ++  L   G +  A  L  +  E+   PN  T+  L+   
Sbjct: 649 TMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708

Query: 182 I 182
           +
Sbjct: 709 V 709



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C++  +E A+    EM+ +G  PD+V  N+L  GL    ++E    +F ++Q +
Sbjct: 598 ILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE 657

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF 89
           G+  DT TY   +  LCK G++ ++  L 
Sbjct: 658 GIPPDTVTYNTLMSWLCKGGFVYDACLLL 686



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 97/210 (46%), Gaps = 2/210 (0%)

Query: 11  EIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           ++  ++ L+S   S KG +    ++  L   L    + +   +L  +M+ +G+      +
Sbjct: 84  DVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLF 143

Query: 70  TIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
              +    K G+  ++  L   +R +  CE   ++Y+ +++ L      ++A  +F+ + 
Sbjct: 144 ISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDML 203

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +   + T+ +++  L    ++D A  +  DM ++   PN + + TLIH   + N  +
Sbjct: 204 SRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN 263

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + ++LL +M     +PDA   + V+  L K
Sbjct: 264 EALQLLEEMFLMGCVPDAETFNDVILGLCK 293



 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 15/226 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVE----RAFKLFDE 56
           +LI     N E +    L  +M  +GI    V   +LFI +   +       +  +L  E
Sbjct: 110 VLIGKLGSNGEFKTIDRLLMQMKDEGI----VFKESLFISIMRDYDKAGFPGQTTRLMLE 165

Query: 57  MQRDGVAADT-RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           M+       T ++Y + ++ L        +  +F  +   K    +  +  ++  LC   
Sbjct: 166 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVN 225

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            ++ AL +   + +   V + V Y  +IH L    ++++A  L  +M      P+  TF 
Sbjct: 226 EVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFN 285

Query: 176 TLIHG---FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I G   F RINE +K++   ++M  +   PD      +++ L K
Sbjct: 286 DVILGLCKFDRINEAAKMV---NRMLIRGFTPDDITYGYLMNGLCK 328


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 124/228 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN YCK +++  A   +SEM + G+KP+VV ++TL     +   ++ A KL  +M+R G
Sbjct: 306 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTG 365

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID  CK G + E+ +L   +     +L+I  Y+ L+DGLCK+GR+  A 
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F S+ +  +  +   Y+ ++HG     +M+ A  +   M E  + P++I +G++I G 
Sbjct: 426 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 485

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
               +  +   +L +MK + +  +  I + ++D   K   S ++L  F
Sbjct: 486 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFF 533



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK  ++E +  L+ +M   G+ PDVV +N+L  G  ++  +E    LF+EM+  
Sbjct: 235 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 294

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+  CK   +  + E F  ++    + ++  YS LID  CK G ++ A
Sbjct: 295 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 354

Query: 121 LELFHSLPRGVLVA-----------------------------------DVVTYSIMIHG 145
           ++L   + R  L+                                    ++VTY+ ++ G
Sbjct: 355 IKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 414

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+M +A ++F  M ++ ++PN   +  L+HG+I+       +++L +M E N+ PD
Sbjct: 415 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 474



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C  +++E    +  EM S+GI  + VI  T+    F+  +   A   F EMQ  G
Sbjct: 481 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 540

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A   TY + IDGLC+ G +  +V+ F  +  L  + ++  Y+ LIDGLC +  +E A 
Sbjct: 541 VEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAK 600

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  D+  ++ +I G    G + +A  L   M E A+  ++  + +L+ GF
Sbjct: 601 KLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGF 660

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  E  +  +  ++M EK ++P+
Sbjct: 661 SQCGELHQARKFFNEMIEKGILPE 684



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY K + +E A+ +  +M    IKPD++++ ++  G     ++E    + +EM+  G
Sbjct: 446 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 505

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++A+    T  ID   K G   +++  F+ ++ +  E  I  Y  LIDGLC++G +E+A+
Sbjct: 506 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAV 565

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  +    L  +V  Y+ +I GL  +  ++ A  LF +M+   + P++  F  LI G 
Sbjct: 566 DYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 625

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++     + + L+ +M E  +  D  + + +V 
Sbjct: 626 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVS 658



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 98/201 (48%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            +++M+  GI P V  +N +   L +   +E + +LF +M+  G++ D  TY   IDG  
Sbjct: 217 FFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYG 276

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + E   LF  ++ + C  DI  Y+ LI+  CK  ++  A E F  +    L  +VV
Sbjct: 277 KVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVV 336

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TYS +I     +G M  A  L  DM    + PN  T+ +LI    +    ++  +LL+ M
Sbjct: 337 TYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 396

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            +  V  +    + ++D L K
Sbjct: 397 LQAGVKLNIVTYTALLDGLCK 417



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           K F++M   G+A    TY + ID LCK G +  S  LF  +R +    D+  Y+ LIDG 
Sbjct: 216 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 275

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            K G LE    LF+ +     V D++TY+ +I+      +M +A + F +M+ N + PNV
Sbjct: 276 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 335

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +T+ TLI  F +       I+LL  M+   ++P+    + ++D
Sbjct: 336 VTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 2/169 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C+   +E A++ +  MLS G++P+V ++ +L  GL   + +E A KLFDEMQ  
Sbjct: 550 VLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCR 609

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   +T  IDG  K+G + E++ L   +  L  E D+  Y+ L+ G  + G L  A
Sbjct: 610 GMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQA 669

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            + F+ +  +G+L  +V+    ++   Y  GQ+D+A +L  +ME  A +
Sbjct: 670 RKFFNEMIEKGILPEEVLCIC-LLREYYKRGQLDEAIELKNEMERMAYS 717



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 95/198 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ Y K  +   ALN + EM   G++  +V +  L  GL E   VE A   F  M   G
Sbjct: 516 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLG 575

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDGLC N  I  + +LF  ++      DI A++ LIDG  K G L+ AL
Sbjct: 576 LQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEAL 635

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  D+  Y+ ++ G    G++ +A   F +M E  + P  +    L+  +
Sbjct: 636 VLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREY 695

Query: 182 IRINEPSKVIELLHKMKE 199
            +  +  + IEL ++M+ 
Sbjct: 696 YKRGQLDEAIELKNEMER 713



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   +  A  ++  ML  GI P+  ++  L  G  +  ++E A K+  +M    
Sbjct: 411 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN 470

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I G C    + E+  +   ++      +    + +ID   K+G+   AL
Sbjct: 471 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL 530

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    + A +VTY ++I GL   G ++ A D F  M    + PNV  + +LI G 
Sbjct: 531 NFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 590

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              N      +L  +M+ + + PD +  + ++D
Sbjct: 591 CXNNCIESAKKLFDEMQCRGMTPDITAFTALID 623



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 75/141 (53%)

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           G + E+ E F  +R  +     ++ + L+  L KSG  ++  + F+ +    +   V TY
Sbjct: 174 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 233

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           ++MI  L  +G ++ +  LF+ M E  ++P+V+T+ +LI G+ ++    +V  L ++MK+
Sbjct: 234 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 293

Query: 200 KNVMPDASIVSIVVDLLAKNE 220
              +PD    + +++   K E
Sbjct: 294 VGCVPDIITYNGLINCYCKFE 314


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  E++ A  +  EM+ KG+  DVV +  L  G  +   +  AF++ +EM    
Sbjct: 398 LINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRR 457

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  TYT   DGLCK G +  + EL   +     EL++  Y+ LI+GLCK G LE A+
Sbjct: 458 VAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAM 517

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       DV TY+ +I  L   G+ D+AH++  +M +  + P++ T+  L++GF
Sbjct: 518 RIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                     +LL  M EKNV P+
Sbjct: 578 CMSGRVEGGKKLLEWMLEKNVRPN 601



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C   ++  A  L+ EM  +G+  D V H  L  GL    +++ A ++  EM   G
Sbjct: 363 VISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKG 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ IDG CK G +VE+  +   +   +   ++  Y+ L DGLCK G +  A 
Sbjct: 423 LDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAAN 482

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  +V TY+ +I+GL   G +++A  +  +ME      +V T+ TLI   
Sbjct: 483 ELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTL 542

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  E  +   +L +M +K + P  +  +++++
Sbjct: 543 CKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMN 575



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 104/201 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC   E+E A+ L  EM +KG++ +  ++ ++   L    QV  A ++ ++M   G
Sbjct: 293 MVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHG 352

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D   +T  I G C  G +  +  LF  ++      D   ++ LI+GLC++G L+ A 
Sbjct: 353 VALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEAD 412

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  DVVTY+++I G    G M +A  +  +M    VAPNV+T+  L  G 
Sbjct: 413 RVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGL 472

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +  +     ELLH+M  K +
Sbjct: 473 CKQGDVRAANELLHEMCNKGL 493



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK   +  A  +++EM+ + + P+VV +  L  GL +   V  A +L  EM   
Sbjct: 432 VLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNK 491

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK G + +++ +   +       D+  Y+ LID LCKSG  + A
Sbjct: 492 GLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRA 551

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +   + TY+++++G    G+++    L   M E  V PNV+T+ +L+  
Sbjct: 552 HNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQ 611

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +          E+   M  + V P+ +  +I++
Sbjct: 612 YCIDKNMKSTTEIYKGMHSQEVAPNENTYNILI 644



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 109/213 (51%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   ++  AL +  +M   G+  D V+  T+  G      +  A +LF+EMQ+ G+AAD 
Sbjct: 333 CNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADR 392

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+T  I+GLC+ G + E+  + + +     ++D+  Y+ LIDG CK G +  A  + + 
Sbjct: 393 VTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNE 452

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  +VVTY+ +  GL   G +  A++L  +M    +  NV T+ +LI+G  +   
Sbjct: 453 MVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGN 512

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + + ++ +M+      D    + ++D L K+
Sbjct: 513 LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKS 545



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 108/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  ++  A  L  EM +KG++ +V  +N+L  GL +   +E+A ++  EM+  G
Sbjct: 468 LSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAG 527

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  ID LCK+G    +  + + +     +  I  Y+ L++G C SGR+E   
Sbjct: 528 HRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGK 587

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  +VVTY+ ++     D  M    +++  M    VAPN  T+  LI G 
Sbjct: 588 KLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGH 647

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + +    +M EK +   AS  S ++ LL K +
Sbjct: 648 CKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKK 686



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+        ++ A   + EM S    PDVV + T+  G     ++E A KL DEM   
Sbjct: 260 ILLKALLSAGRLKDACQHFDEMSSP---PDVVTYGTMVHGYCVRGELENAVKLLDEMAAK 316

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ++   YT  I  LC  G + +++ +   + +    LD   ++ +I G C  G L  A
Sbjct: 317 GLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAA 376

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + +  L AD VT++ +I+GL   G++ +A  +  +M +  +  +V+T+  LI G
Sbjct: 377 RRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDG 436

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +     +   + ++M  + V P+    + + D L K 
Sbjct: 437 YCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQ 475



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 5/243 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   +E A+ + +EM + G + DV  + TL   L +  + +RA  +  EM   G
Sbjct: 503 LINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKG 562

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + ++G C +G +    +L   +       ++  Y+ L+   C    ++   
Sbjct: 563 IKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTT 622

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  +    +  +  TY+I+I G      M +A     +M E  +     ++  LI   
Sbjct: 623 EIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLL 682

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +  + S+      KM+ + +  +  + S  +D ++ NE +L S    T+    E V+ S
Sbjct: 683 NKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMD-ISFNEDNLES----TITLCDELVEAS 737

Query: 242 NVK 244
           +VK
Sbjct: 738 HVK 740



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 42/74 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+CK + ++ AL  + EM+ KG++     ++ L   L +  +   A   FD+M+ +
Sbjct: 642 ILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNE 701

Query: 61  GVAADTRTYTIFID 74
           G+ A+   Y+ ++D
Sbjct: 702 GLTAEPDVYSFYMD 715


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 119/216 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR + A 
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    LV DV TYS+M   L   G +++  DLFL MEEN    N     +++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  + ++    L  + EK+   +AS  S+ +DLL+
Sbjct: 735 LQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLS 770



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++ A   Y EML +GI P+VV ++++   L +   +++A ++   M ++G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTY   + G C +G   E++   + +     E D+  Y+ L+D LCK+GR   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + PN   F  LI  +
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + PD      V+ +L K+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L + M+S G+KPD V +NTL  G  +I ++E A  LF EM+  G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF  +  N + P+V T+  +    
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     ++ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 700 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 759

Query: 241 SNV 243
           S  
Sbjct: 760 STA 762



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 119/223 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ + + P  +++N+L   L    + ++A +L  EM   G+  DT
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + DI  YS LIDG C +G+++ A +L  S
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTY+ +I+G     +M+ A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + E     + S  +I++  L KN ++  +L  F
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMF 642



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C    ++        ++ KG + D +    L  GL    +   A  +    M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  +Y I + GLC      E++EL + +      C  D+ +Y+ +I+G  K G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 118 EIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A   +H  L RG+L  +VVTYS +I  L     MDKA ++   M +N V PN  T+ +
Sbjct: 216 DKAYGTYHEMLDRGIL-PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++HG+    +P + I  L KM    V PD    + ++D L KN
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + + A  L  EML +GI  D +  N++     +  +V  + KLFD M R G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG C  G + E+ +L  ++  +  + D   Y+ LI+G CK  R+E AL
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ + + M+  G+ P+   +N++  G     Q + A     +M  DG
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +D LCKNG   E+ ++F ++     + +I  Y  L+ G    G L    
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +   +SI+I      G++D+A  +F  M +  + P+ +T+GT+I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +       +    +M ++ + P
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSP 442



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I I    K G + +++ +F  +R      D   Y  +I  LCKSGR+E A+
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L    + Y+ +IH L    + DKA +L L+M +  +  + I F ++I   
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  K+ +L+ ++    V PD    S ++D
Sbjct: 490 CKEGRVIESEKLFDLMVRI---GVKPDIITYSTLID 522


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 143 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 202

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 203 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 262

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 263 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDG 322

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 323 CCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDA 367



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y  MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 249 LIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 308

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 309 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAE 368

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  +  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 369 KMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 179 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 238

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
           +  +  T+T  IDG CKNG +  ++E+++  R+L   L  D+  Y+ LI GLCK G L+ 
Sbjct: 239 LVPNGVTFTTLIDGHCKNGRVDLAMEIYK--RMLSQSLLPDLITYNTLIYGLCKKGDLKQ 296

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI 
Sbjct: 297 AHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALIS 356

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +        ++L +M    + P+    +++++   K 
Sbjct: 357 GLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKK 396



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 213 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQ 272

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 273 SLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 332

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + PN  T+  +I+ 
Sbjct: 333 FEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINE 392

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 393 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 426



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 74/145 (51%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A    + I +   CK+G I  +  +F  +        + +Y+ L++G  + G L+  
Sbjct: 133 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 192

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++    +  DV TYS++I+GL  + +MD A++LF +M    + PN +TF TLI G
Sbjct: 193 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 252

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +       +E+  +M  ++++PD
Sbjct: 253 HCKNGRVDLAMEIYKRMLSQSLLPD 277



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 129 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 188

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 189 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 248

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 249 LIDGHCKN 256


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 118/225 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+    ++ ++  A N++ EML +G+ P VV  NTL  G+ +   +  A  L   M + 
Sbjct: 249 MLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKA 308

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D  TY  F+ GLCK G I ++VE+F  +R      +   ++ LID  CK G +   
Sbjct: 309 GVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAG 368

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   +    +  D+V Y+ + +GL     +  A+D+  +M  N + P+ +T+ TLI G
Sbjct: 369 LELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDG 428

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           F +  E    +E+  +M ++ V  D    + ++  L+K+  S++S
Sbjct: 429 FCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDS 473



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 113/219 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  ++  A  L   M   G+ PDV  +     GL +  +++ A ++F+EM+  G
Sbjct: 285 LMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +T  +T  ID  CK G +   +EL R +     + D+ AY+ L +GLC+   L+ A 
Sbjct: 345 VNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAAN 404

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    L  D VTY+ +I G   +G++D A ++  +M +  VA + +T+ TLI G 
Sbjct: 405 DIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGL 464

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +         +L +M E  + PD +  ++V+D   KN 
Sbjct: 465 SKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNS 503



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 107/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK   +   L L+ EM ++GIK D+V +N L  GL  +  ++ A  + +EM+ +G
Sbjct: 355 LIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  ++E+ + +      LD   Y+ LI GL KSGR   + 
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSE 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  D  TY+++I     +  +     L  +M+     P V+T+  +++GF
Sbjct: 475 RILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGF 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             + +      LL+ M    V PD    +I++D
Sbjct: 535 CILGQMKNADMLLNAMLNIGVCPDDITYNILLD 567



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L NG C+ ++++ A ++  EM + G+KPD V + TL  G  +  +++ A ++  EM  +G
Sbjct: 390 LANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEG 449

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TYT  I GL K+G  V+S  +   +     E D   Y+ +ID  CK+  ++   
Sbjct: 450 VALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGF 509

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        VVTY+++++G    GQM  A  L   M    V P+ IT+  L+ G 
Sbjct: 510 KLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGH 569

Query: 182 IR 183
            +
Sbjct: 570 CK 571



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +CKN +++    L  EM +KG KP VV +N +  G   + Q++ A  L + M   
Sbjct: 494 MVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNI 553

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           GV  D  TY I +DG CK+G + ++ EL     ++    D   Y+ LI+   K
Sbjct: 554 GVCPDDITYNILLDGHCKHGKVRDAEELKSAKGMVS---DFGLYTSLINEFVK 603



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 61/115 (53%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           + + ++ L+  + +SG+L  A  +F  + R  +   VVT++ ++ G+     ++ A+ L 
Sbjct: 243 EAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALR 302

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             M +  VAP+V T+G  + G  +       +E+  +M+E+ V P+  + + ++D
Sbjct: 303 GLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLID 357


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 144 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLAS 203

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR++ A
Sbjct: 204 GVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFA 263

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 264 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 323

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 324 CCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDA 368



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y  MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 250 LIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 310 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAE 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ N  AP+V+T+  L++G
Sbjct: 370 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +   ++    L S ML+ G+ PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 180 LMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
           +  +  T+T  IDG CKNG +  ++E+++  R+L   L  D+  Y+ LI GLCK G L+ 
Sbjct: 240 LIPNGVTFTTLIDGHCKNGRVDFAMEIYK--RMLSQSLLPDLITYNTLIYGLCKKGDLKQ 297

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  LI 
Sbjct: 298 AHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALIS 357

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +        ++L +M    + PD    +++++   K 
Sbjct: 358 GLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 397



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 214 VLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQ 273

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 274 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 333

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 334 FEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINE 393

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+     P     +++++
Sbjct: 394 FCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMN 427



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 84/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 114 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 173

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    ++ DV TYS++I+GL  + +MD A++LF 
Sbjct: 174 VVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFD 233

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 234 EMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPD 278



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 130 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGH 189

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 190 LDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 249

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 250 LIDGHCKN 257



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    + G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 67  SDIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 126

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 127 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 186

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    +   L   M    V+PD    S++++ L K
Sbjct: 187 LGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCK 221


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK K ++ A +LY  M+  G+ PDVV  + L  GL    Q   A+ LF EM + G
Sbjct: 263 LIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIG 322

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  TY   ID L K     ES+ L   +      +D+  Y+ L+D L K G++E A 
Sbjct: 323 VAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAK 382

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++        +  + VTY++++      G +D A  + L MEE +V PNV+TF ++I+G 
Sbjct: 383 DVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGL 442

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++     K  + + KMK+  + P+      ++D
Sbjct: 443 VKRGCLGKAADYMRKMKDSGIAPNVVTYGTLID 475



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 109/224 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  KN  IEGA  L+ +M  +G+  D V + TL  GLF+   +  AFK+  E+    
Sbjct: 508 LVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKN 567

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D   Y +FI+ LC  G   E+    + +R    E D   Y+ +I   C+ G+   AL
Sbjct: 568 LSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKAL 627

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  +  +++TY+ ++ GL   G + KA  L  +M     AP  +T   ++   
Sbjct: 628 KLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQAC 687

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
                P  ++E+   M    +  D ++ + +V +L  + ++ N+
Sbjct: 688 SGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNA 731



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 12/245 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING  K   +  A +   +M   GI P+VV + TL  G F+    E A  ++ +M  +G
Sbjct: 438 IINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEG 497

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+       ++GL KNG I  +  LF+ +      LD   Y+ L+DGL K+G +  A 
Sbjct: 498 VEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAF 557

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   L    L  D V Y++ I+ L   G+  +A     +M    + P+  T+ T+I   
Sbjct: 558 KVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAAR 617

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLL-----AKNEISLNSL------PSF 229
            R  + SK ++LL +MK  ++ P+  +  ++VV LL      K +  LN +      P+ 
Sbjct: 618 CREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTS 677

Query: 230 TVHER 234
             H+R
Sbjct: 678 LTHQR 682



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 35/217 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK +++  AL +   M ++G+  DVV +N+L  G F     + A ++ + M+ DG
Sbjct: 193 LIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADG 252

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V                                   E ++  Y+ LI   CK   ++ A 
Sbjct: 253 V-----------------------------------EPNVVTYTALIGEYCKGKGMDEAF 277

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  ++ DVVT S ++ GL  DGQ  +A+ LF +M++  VAPN +T+ TLI   
Sbjct: 278 SLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSL 337

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S+ + LL +M  + V+ D  + + ++D L K
Sbjct: 338 AKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGK 374



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNL----YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +I  YC  + +  AL+L            +  D V +N     L E      A  +  EM
Sbjct: 82  IILSYCSLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSEQGHGRLAPPVLSEM 141

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQAYSCLIDGLCKSG 115
            + GV+ D  T +  + GLC+ G + E+  L   L   +    LD+  ++ LIDG CK  
Sbjct: 142 CKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGIDGLDVVGWNALIDGYCKVQ 201

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            +  AL +   +    +  DVV Y+ ++ G ++ G  D A ++   M+ + V PNV+T+ 
Sbjct: 202 DMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYT 261

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            LI  + +     +   L   M    V+PD   +S +VD L ++
Sbjct: 262 ALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRD 305



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   I+GA  +  +M  K + P+VV  +++  GL +   + +A     +M+  
Sbjct: 402 VLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDS 461

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +  TY   IDG  K      +++++R +     E +      L++GL K+G +E A
Sbjct: 462 GIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGA 521

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    L+ D V Y+ ++ GL+  G M  A  +  ++ E  ++P+ + +   I+ 
Sbjct: 522 EALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINC 581

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              + + S+    L +M+   + PD +  + ++
Sbjct: 582 LCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMI 614



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C+  +   AL L  EM    IKP+++ + TL +GL E   V++A  L +EM   G
Sbjct: 613 MIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAG 672

Query: 62  VA-----------------------------------ADTRTYTIFIDGLCKNGYIVESV 86
            A                                   AD   Y   +  LC +G    + 
Sbjct: 673 FAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNAT 732

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +   +       D   ++ LI G CKS  L+ A  ++  +    L  ++ T++ ++ GL
Sbjct: 733 VVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGL 792

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            + G++ +A  +  DM++  + PN +T+  L+ G+ + +   + + L  +M  K  +P A
Sbjct: 793 ESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKA 852

Query: 207 SIVSIVVDLLAK 218
           S  + ++   AK
Sbjct: 853 STYNSLMSDFAK 864



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 96/209 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  C +     A  +  EML++GI PD +  N L +G  +   ++ AF ++ +M   G
Sbjct: 718 LVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQG 777

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  T+   + GL   G I E+  +   ++ +  E +   Y  L+ G  K      AL
Sbjct: 778 LSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEAL 837

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +     +    TY+ ++      G M++A +LF +M+   V     T+  L++G+
Sbjct: 838 RLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGW 897

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
            ++    +V  LL  MKE    P    +S
Sbjct: 898 SKLRNGIEVRILLKDMKELGFKPSKGTIS 926



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K +    +L L  EM+S+G+  D+V++  L   L +  ++E A  +    Q D 
Sbjct: 333 LIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDN 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT+ +D  C+ G I  + ++   +       ++  +S +I+GL K G L  A 
Sbjct: 393 ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAA 452

Query: 122 ELFHSLPRGVLVADVVTYSIMI-----------------------------------HGL 146
           +    +    +  +VVTY  +I                                   +GL
Sbjct: 453 DYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGL 512

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G ++ A  LF DM+E  +  + + + TL+ G  +        ++  ++ EKN+ PDA
Sbjct: 513 RKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDA 572

Query: 207 SIVSIVVDLL 216
            + ++ ++ L
Sbjct: 573 VVYNVFINCL 582



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 2/204 (0%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVER-AFKLFDEMQRDGVAADTRTYTIFID 74
           L ++  M+  G+  D+ ++NTL + +   H + R A  + DEM   G+A DT T+   I 
Sbjct: 697 LEIHELMMGAGLHADITVYNTL-VHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALIL 755

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK+ ++  +  ++  +       +I  ++ L+ GL  +GR+  A  +   + +  L  
Sbjct: 756 GHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEP 815

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + +TY I++ G        +A  L+ +M      P   T+ +L+  F +    ++  EL 
Sbjct: 816 NNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELF 875

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            +MK + V+  +S   I+++  +K
Sbjct: 876 SEMKRRGVLHTSSTYDILLNGWSK 899



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ GY K      AL LY EM+SKG  P    +N+L     +   + +A +LF EM+R 
Sbjct: 822 ILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRR 881

Query: 61  GVAADTRTYTIFIDGLCK 78
           GV   + TY I ++G  K
Sbjct: 882 GVLHTSSTYDILLNGWSK 899


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 114/205 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  +I  A ++++ +   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 130 ILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 189

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CKSGR+++A
Sbjct: 190 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLA 249

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AHDL  +M    + P+ IT+ TLI G
Sbjct: 250 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDG 309

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     E   +M ++N+  D
Sbjct: 310 CCKEGDLETAFEHRKRMIQENIRLD 334



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK+  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 236 LIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAE 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G +     L  +M+ +   P+V+T+  L++G
Sbjct: 356 KVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 200 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQ 259

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 260 SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETA 319

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 320 FEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINE 379

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +     +LL +M+    +P     +++++
Sbjct: 380 FCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 166 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK+G +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 226 LVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 286 DLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGL 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 346 CQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKK 383



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 78/155 (50%)

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           +  ++E+   G  A    + I +   CK G I  +  +F  +        + +++ L++G
Sbjct: 110 WGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNG 169

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF +M +  + PN
Sbjct: 170 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPN 229

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 230 GVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPD 264


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 114/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN YC  ++I  A ++++++L  G +PD++ + TL  GL    QV+ +    D +   
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQ 148

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +Y   I+GLCK G    ++ L R +    C  D+  Y+ +IDGLCK   +  A
Sbjct: 149 GIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDA 208

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  +VVTY+ +I+G    GQ+DKA  L  +M    V PNV TF TL+ G
Sbjct: 209 FDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDG 268

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  +  +   L+  M ++ V PD    + ++D
Sbjct: 269 LCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMD 302



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A +LY EM  K + P+VV + +L  G   + Q+++AF L +EM    
Sbjct: 195 IIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKN 254

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL--------------------------------- 88
           V  +  T+   +DGLCK G + E+  L                                 
Sbjct: 255 VNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAK 314

Query: 89  --FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
             F  +  +    D+ +YS +I GL K   L+ A++LF  +    ++ DVV YS +I GL
Sbjct: 315 NVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGL 374

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+++ A     +M +    PNVIT+ +LI    + ++  K I LL K+K++ +  + 
Sbjct: 375 CKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANM 434

Query: 207 SIVSIVVDLLAKN 219
              +I+VD L K+
Sbjct: 435 YTYNILVDGLCKD 447



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 109/211 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K     ++L+  M   GI+ + +  N L      + Q+  AF +F ++ + G   D  
Sbjct: 61  KTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDII 120

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TYT  I GLC NG + ES+     L     +LD  +Y  LI+GLCK G+   AL L   +
Sbjct: 121 TYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKI 180

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              +   DVV Y+ +I GL  D  +  A DL+ +M E  V PNV+T+ +LI+GF  + + 
Sbjct: 181 EGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQL 240

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            K   LL++M  KNV P+    + +VD L K
Sbjct: 241 DKAFGLLNEMVLKNVNPNVCTFNTLVDGLCK 271



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 111/197 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G  K K ++ A++L+  M ++ + PDVV +++L  GL +  ++  A K  DEM   
Sbjct: 334 VMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDR 393

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYT  ID LCK+  + +++ L + ++    + ++  Y+ L+DGLCK GRL  A
Sbjct: 394 GQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDA 453

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L       DVVTYSIMI+GL  +   D+A  L   ME+    P+ I + T+I+ 
Sbjct: 454 QKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINA 513

Query: 181 FIRINEPSKVIELLHKM 197
           F   +   K  +LL +M
Sbjct: 514 FFEKDMNDKAEKLLREM 530



 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 35/240 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  ++  A +L + M+ +G+ PDV  +N L  G F + +  +A  +F+ M + G
Sbjct: 265 LVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMG 324

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y++ I GL K   + E+++LF  +R      D+ AYS LIDGLCKSGR+  AL
Sbjct: 325 VTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSAL 384

Query: 122 ELFHSL-----PRGVLV------------------------------ADVVTYSIMIHGL 146
           +    +     P  V+                               A++ TY+I++ GL
Sbjct: 385 KYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGL 444

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             DG++  A  +F D+       +V+T+  +I+G  + +   + + LL KM++K  +PDA
Sbjct: 445 CKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDA 504



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C N +++ +LN +  ++S+GIK D V + TL  GL +I Q   A +L  +++ + 
Sbjct: 125 LIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEI 184

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   IDGLCK+  + ++ +L+  +   +   ++  Y+ LI G C  G+L+ A 
Sbjct: 185 CRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAF 244

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  +V T++ ++ GL  +G+M +A  L   M +  V P+V T+  L+ G+
Sbjct: 245 GLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGY 304

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E  K   + + M +  V  D    S+++  L+K
Sbjct: 305 FLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSK 341



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  +   AL L  ++  +  +PDVV++NT+  GL +   V  AF L+ EM    
Sbjct: 160 LINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKR 219

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  I G C  G + ++  L   + +     ++  ++ L+DGLCK G++  A 
Sbjct: 220 VFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAK 279

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  DV TY+ ++ G +   +  KA ++F  M +  V  +V ++  +I G 
Sbjct: 280 SLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGL 339

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    + ++L   M+ +NV+PD    S ++D L K+
Sbjct: 340 SKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKS 377



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 90/194 (46%), Gaps = 3/194 (1%)

Query: 31  VVIHNTLFIGLFEIHQVER---AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           ++ ++TL +     H +     A   F+ M R         +   +  L K  +    + 
Sbjct: 11  IIPNSTLLLSHTHFHSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIH 70

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           LF+ + +   + +    + LI+  C   ++  A  +F  + +     D++TY+ +I GL 
Sbjct: 71  LFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLC 130

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
            +GQ+ ++ +    +    +  + +++GTLI+G  +I +    + LL K++ +   PD  
Sbjct: 131 LNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVV 190

Query: 208 IVSIVVDLLAKNEI 221
           + + ++D L K+++
Sbjct: 191 MYNTIIDGLCKDKL 204


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G  +I  ++  F+L   MQ  
Sbjct: 141 ILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++  LF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDA 365



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI  LC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   PNV+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L S M + G++PDV  ++ L  GL +  +++ A  LFDEM  +G
Sbjct: 177 LMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E++R +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI   
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 103/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I  L  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F +  +     +LL +M+    +P+
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYLPN 415



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +   CK G I  +  +F ++        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L   +    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +M +N + PN +TF TLI G  +       +E+  +M  ++++P         DL+  N 
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLP---------DLITYNT 281

Query: 221 ISLNSLPSFTVHERQEEVDESNVK 244
           +         + + Q+ +DE ++K
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMK 305


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CKNK +  A +LYSEM+ KGI P+V  + TL  G   +  ++ AF L +EM+   
Sbjct: 207 IIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKN 266

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I ID L K G I E++ LF  ++      +I  Y+ LIDGLCK+  LE A+
Sbjct: 267 INPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAI 326

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  +V +Y+I++  L   G+++ A   F  +       NV T+  +I+G 
Sbjct: 327 ALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGL 386

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNE 220
            +      V++L  KM+ K  MP+A +  +I+  LL K+E
Sbjct: 387 CKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDE 426



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 2/203 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C    ++ A +L +EM  K I PDV   N L   L +  +++ A  LF+EM+   
Sbjct: 242 LIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKN 301

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  IDGLCKN ++  ++ L + ++    + ++ +Y+ L+D LCK GRLE A 
Sbjct: 302 MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAK 361

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + F H L +G  + +V TY++MI+GL   G      DL   ME     PN ITF T+I  
Sbjct: 362 QFFQHLLVKGYHL-NVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICA 420

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
            +  +E  K  + L +M  + ++
Sbjct: 421 LLEKDENDKAEKFLREMIARGLL 443



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 118/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   EI+ AL+ + +++++G + D V + TL  GL +  + +   +L  +++   
Sbjct: 137 LIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHS 196

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT  I  LCKN  + ++ +L+  + +     ++  Y+ LI G C  G L+ A 
Sbjct: 197 VKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAF 256

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  DV T++I+I  L  +G++D+A  LF +M+   + PN++T+ +LI G 
Sbjct: 257 SLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGL 316

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +   + I L  KMKE+ + P+    +I++D L K
Sbjct: 317 CKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCK 353



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           KNK     ++L+ +    GI PD+   + L      +  +  AF +F  + + G   +  
Sbjct: 73  KNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANILKRGYHPNAI 132

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T    I GLC  G I  ++     +     +LD  +Y  LI+GLCK+G  +    L   L
Sbjct: 133 TLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKL 192

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  D+V Y+ +IH L  +  +  A DL+ +M    ++PNV T+ TLIHGF  +   
Sbjct: 193 EGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNL 252

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   LL++MK KN+ PD    +I++D LAK
Sbjct: 253 KEAFSLLNEMKLKNINPDVYTFNILIDALAK 283



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 109/220 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    I  A ++++ +L +G  P+ +  NTL  GL    +++RA    D++   
Sbjct: 101 ILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQ 160

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G       L R L     + D+  Y+ +I  LCK+  L  A
Sbjct: 161 GFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDA 220

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  +V TY+ +IHG    G + +A  L  +M+   + P+V TF  LI  
Sbjct: 221 CDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDA 280

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +  + + L  +MK KN+ P+    + ++D L KN 
Sbjct: 281 LAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNH 320



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 89/162 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+   K  +I+ A++L+ EM  K + P++V + +L  GL + H +ERA  L  +M+  
Sbjct: 276 ILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQ 335

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +YTI +D LCK G +  + + F+ L +    L+++ Y+ +I+GLCK+G     
Sbjct: 336 GIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDV 395

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           ++L   +     + + +T+  +I  L    + DKA     +M
Sbjct: 396 MDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREM 437



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 35/207 (16%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+  ++ ML     P   + N +   L +  +      LF + + +G+  D  T +I I+
Sbjct: 45  AVASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILIN 104

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C   +I  +  +F  +       +    + LI GLC  G ++ AL  FH         
Sbjct: 105 CFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALH-FHD-------- 155

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
                 ++  G     Q+D+                 +++GTLI+G  +  E   V  LL
Sbjct: 156 -----KVVAQGF----QLDQ-----------------VSYGTLINGLCKAGETKAVARLL 189

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEI 221
            K++  +V PD  + + ++  L KN++
Sbjct: 190 RKLEGHSVKPDLVMYTTIIHCLCKNKL 216



 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK       ++L S+M  KG  P+ +   T+   L E  + ++A K   EM   
Sbjct: 381 VMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIAR 440

Query: 61  GV 62
           G+
Sbjct: 441 GL 442


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   +  + ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M  +  AP+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 400



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++GA  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M      P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMN 430



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 83/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|302780413|ref|XP_002971981.1| hypothetical protein SELMODRAFT_96362 [Selaginella moellendorffii]
 gi|300160280|gb|EFJ26898.1| hypothetical protein SELMODRAFT_96362 [Selaginella moellendorffii]
          Length = 294

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 101/181 (55%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84
           +GI+P++V +N+L  G +  ++V+    L +EM+      D  TY   IDGLCK G + E
Sbjct: 6   RGIEPNMVTYNSLSHGFYMANRVDPTLLLMEEMRATKCLPDIITYNTLIDGLCKTGRVPE 65

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           +  LF  ++   C LD+  YSCLI G CK  R+ +A  LF    +  ++ DVVT+S ++ 
Sbjct: 66  ANRLFGDMKAKFCNLDVIMYSCLIGGFCKLERINMACTLFDDTLKQAILPDVVTFSTLVE 125

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G  N G +D A  L  +M  +  +P+V T+ +L+ GF ++    +   +L +M ++   P
Sbjct: 126 GYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 185

Query: 205 D 205
           +
Sbjct: 186 N 186



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 4/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK + I  A  L+ + L + I PDVV  +TL  G      V+ A +L +EM    
Sbjct: 88  LIGGFCKLERINMACTLFDDTLKQAILPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD 147

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TYT  +DG CK G +VE+  + + +    C+ ++  +S LI G C +G LE A 
Sbjct: 148 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV-VWS-LIGGFCGTGDLEEAR 205

Query: 122 ELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   L R     AD+  Y +M+ GL   G+M  A +L   ++++   P    +  LI G
Sbjct: 206 KMLERLERDENCKADMFAYQVMMDGLCTTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 265

Query: 181 FIRINEPSKVIELLHKMK-EKNVMPDA 206
             +  E  K +E+L +M   +   P+A
Sbjct: 266 LCQGKELGKALEVLEEMTLSRKSRPNA 292



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 8/245 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +  A  L+ +M +K    DV++++ L  G  ++ ++  A  LFD+  +  
Sbjct: 53  LIDGLCKTGRVPEANRLFGDMKAKFCNLDVIMYSCLIGGFCKLERINMACTLFDDTLKQA 112

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T++  ++G C  G + ++  L   +    C  D+  Y+ L+DG CK GR+  A 
Sbjct: 113 ILPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 172

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF--LDMEENAVAPNVITFGTLIH 179
            +   + +     +VV +S+ I G    G +++A  +   L+ +EN  A ++  +  ++ 
Sbjct: 173 RVLKRMAKRGCQPNVV-WSL-IGGFCGTGDLEEARKMLERLERDENCKA-DMFAYQVMMD 229

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASI-VSIVVDLLAKNEI--SLNSLPSFTVHERQE 236
           G       S  +ELL  +K+    P   I V+++  L    E+  +L  L   T+  +  
Sbjct: 230 GLCTTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKALEVLEEMTLSRKSR 289

Query: 237 EVDES 241
              E+
Sbjct: 290 PNAEA 294



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G+     ++  L L  EM +    PD++ +NTL  GL +  +V  A +LF +M+   
Sbjct: 18  LSHGFYMANRVDPTLLLMEEMRATKCLPDIITYNTLIDGLCKTGRVPEANRLFGDMKAKF 77

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  I G CK   I  +  LF          D+  +S L++G C +G ++ A 
Sbjct: 78  CNLDVIMYSCLIGGFCKLERINMACTLFDDTLKQAILPDVVTFSTLVEGYCNAGLVDDAE 137

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       DV TY+ ++ G    G+M +A  +   M +    PNV+   +LI GF
Sbjct: 138 RLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVW--SLIGGF 195

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLA 217
               +  +  ++L ++ +++N   D     +++D L 
Sbjct: 196 CGTGDLEEARKMLERLERDENCKADMFAYQVMMDGLC 232



 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 39/86 (45%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           ++VTY+ + HG Y   ++D    L  +M      P++IT+ TLI G  +     +   L 
Sbjct: 11  NMVTYNSLSHGFYMANRVDPTLLLMEEMRATKCLPDIITYNTLIDGLCKTGRVPEANRLF 70

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNE 220
             MK K    D  + S ++    K E
Sbjct: 71  GDMKAKFCNLDVIMYSCLIGGFCKLE 96


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 121/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G  ++  +   F+L   MQ  
Sbjct: 145 ILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQAS 204

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + +  ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 205 GVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLA 264

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D+VTY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 265 MEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 324

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 325 SCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDA 369



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD+V +NTL  GL +   +++A  L DEM   G
Sbjct: 251 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKG 310

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E    +      LD  AY+ LI GLC+ GR   A 
Sbjct: 311 LKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAE 370

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T+  L++G
Sbjct: 371 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  ++     L   M + G++PDV  ++ L  GL +  +++   +LFDEM   G
Sbjct: 181 LMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXG 240

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 241 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQ 300

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 301 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGL 360

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 361 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 398



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++    L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 215 VLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 274

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 275 SLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 334

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 335 FEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 394

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +     +L+ +M+    +P     +++++
Sbjct: 395 FCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMN 428



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +   CK G I  +  +F  +        
Sbjct: 115 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 174

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L     L  ++    +  DV TYS++I+GL  + +MD  ++LF 
Sbjct: 175 VVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFD 234

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKN 219
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD  +  +++  L  K 
Sbjct: 235 EMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKG 294

Query: 220 EISLNSLPSFTVHERQEEVDESNVK 244
           ++           + Q+ +DE ++K
Sbjct: 295 DLK----------QAQDLIDEMSMK 309


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 121/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK   I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 130 ILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHAS 189

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + E+ ELF  + +         ++ LIDG CK+GR+++A
Sbjct: 190 GVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLA 249

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AH L  +M      P+ IT+ TLI G
Sbjct: 250 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDG 309

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 310 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 354



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 96/179 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L  EM   G
Sbjct: 236 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKG 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 296 XKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +       D  TY+++I+     G +     L  +M+ +   P+V+T+  L++G
Sbjct: 356 KMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 166 LMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 226 LVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAH 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 286 VLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M      PD    +++++   K 
Sbjct: 346 CQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKK 383



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P  V   TL  G  +  +V+ A +++ +M   
Sbjct: 200 VLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 259

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 260 SLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTA 319

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M      P+  T+  +I+ 
Sbjct: 320 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINE 379

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +     +LL +M+    +P     +++++
Sbjct: 380 FCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 80/165 (48%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK G I  +  +F  +        
Sbjct: 100 LMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPS 159

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L+ G  + G L+    L  ++    +  DV TYS++I+GL  + +MD+A++LF 
Sbjct: 160 VVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFD 219

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + P  +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 220 EMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 264



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ ++ G    G 
Sbjct: 116 ILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGD 175

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  +  +  +  EL  +M    ++P     + 
Sbjct: 176 LDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTT 235

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 236 LIDGHCKN 243



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 53  SDIXVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 112

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G +  A  +F  + +  + P+V+++ TL+ G+IR
Sbjct: 113 YQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIR 172

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 173 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 207


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 119/216 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR + A 
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    LV DV TYS+M   L   G +++  DLFL MEEN    N     +++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  + ++    L  + EK+   +AS  S+ +DLL+
Sbjct: 735 LQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLS 770



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++ A   Y EML +GI P+VV ++++   L +   +++A ++   M ++G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTY   + G C +G   E++   + +     E D+  Y+ L+D LCK+GR   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + PN   F  LI  +
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + PD      V+ +L K+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L + M+S G+KPD V +NTL  G  +I ++E A  LF EM+  G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF  +  N + P+V T+  +    
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     ++ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 700 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 759

Query: 241 SNV 243
           S  
Sbjct: 760 STA 762



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 119/223 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ + + P  +++N+L   L    + ++A +L  EM   G+  DT
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + DI  YS LIDG C +G+++ A +L  S
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTY+ +I+G     +M+ A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + E     + S  +I++  L KN ++  +L  F
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMF 642



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C    ++        ++ KG + D +    L  GL    +   A  +    M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  +Y I + GLC      E++EL + +      C  D+ +Y+ +I+G  K G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 118 EIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A   +H  L RG+L  +VVTYS +I  L     MDKA ++   M +N V PN  T+ +
Sbjct: 216 DKAYGTYHEMLDRGIL-PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++HG+    +P + I  L KM    V PD    + ++D L KN
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + + A  L  EML +GI  D +  N++     +  +V  + KLFD M R G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG C  G + E+ +L  ++  +  + D   Y+ LI+G CK  R+E AL
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ + + M+  G+ P+   +N++  G     Q + A     +M  DG
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +D LCKNG   E+ ++F ++     + +I  Y  L+ G    G L    
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +   +SI+I      G++D+A  +F  M +  + P+ +T+GT+I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +       +    +M ++ + P
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSP 442



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I I    K G + +++ +F  +R      D   Y  +I  LCKSGR+E A+
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L    + Y+ +IH L    + DKA +L L+M +  +  + I F ++I   
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  K+ +L+ ++    V PD    S ++D
Sbjct: 490 CKEGRVIESEKLFDLMVRI---GVKPDIITYSTLID 522


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A  ++  +   G++P VV +NTL  G   +  ++  F+L   M+  
Sbjct: 136 ILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRAS 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 196 GVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLA 255

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +++GL   G +++AH L  +M    + P+  T+ TLI G
Sbjct: 256 MEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDG 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S ++
Sbjct: 316 CCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDA 360



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 98/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   + +A  L DEM   G
Sbjct: 242 LIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKG 301

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 302 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAE 361

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ N   P V+T+  L++G
Sbjct: 362 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +   ++ A +LFDEM   G
Sbjct: 172 LMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKG 231

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       DJ  Y+ L+ GLCK G L  A 
Sbjct: 232 LVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAH 291

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 292 GLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGL 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 352 CQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 389



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 206 VLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 265

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   + GLCK G + ++  L   +     + D   Y+ LIDG CK G L+ A
Sbjct: 266 XLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAA 325

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 326 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINE 385

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 386 FCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMN 419



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 49  RAFKL----FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           R FKL    ++E+   G  A    + I +   CK+G I  +  +F  +        + +Y
Sbjct: 110 RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSY 169

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + L++G  + G L+    L  ++    +  DV TYS++I+GL  +  MD A++LF +M  
Sbjct: 170 NTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLV 229

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + PN +TF TLI G  +       +E+  +M  + ++PD    + +V  L K 
Sbjct: 230 KGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKK 284



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 75/155 (48%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 59  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGF 118

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 119 YEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIR 178

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M+   V PD    S++++ L K
Sbjct: 179 LGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCK 213


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 110/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I GYCK  +++ A+  + +M  K +KPD + + TL    +     +    L+ EM+  
Sbjct: 260 IMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEER 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     +Y++ I GLCK    +E+  +F T+    C  ++  Y+ LID   K+G +E A
Sbjct: 320 GLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEA 379

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +       D VTYS++++GL   G++D   +LF       VA N + + +LI G
Sbjct: 380 MRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDG 439

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +         L  +M EK    D+   + ++D LAK+
Sbjct: 440 LGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKH 478



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 112/216 (51%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK ++   A  ++  M  KG + +V I+  L     +   +E A +LF+ M+ +
Sbjct: 330 LVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNE 389

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY++ ++GLCK+G + + +ELF   R     ++   Y+ LIDGL K+GR+E A
Sbjct: 390 GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDA 449

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       D   Y+ +I  L   G++D+A  LF  MEE      V TF  LI G
Sbjct: 450 ENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDG 509

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDL 215
             + ++  + I+   KM +K + P  AS  ++ + L
Sbjct: 510 LFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 545



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 110/220 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y KN  +E A+ L+  M ++G +PD V ++ L  GL +  +++   +LFD  +  G
Sbjct: 366 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +   Y   IDGL K G I ++  LF  +    C  D   Y+ +ID L K G+++ AL
Sbjct: 426 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +        V T++I+I GL+ + + ++A   +  M +  + P V +F  L  G 
Sbjct: 486 ALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 545

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               + ++  ++L  +    ++P+ +   ++  L     I
Sbjct: 546 CLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKAQRI 585



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 35/242 (14%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E  L ++  M   GI P +  +N L  GL     +E A K+F+ M    +  DT TY I
Sbjct: 201 VEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNI 260

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELD-------IQA--------------------- 103
            I G CK G + +++E FR + +   + D       IQA                     
Sbjct: 261 MIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERG 320

Query: 104 -------YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
                  YS +I GLCK  +   A  +F ++ +    A+V  Y+ +I     +G M++A 
Sbjct: 321 LEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAM 380

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            LF  M+     P+ +T+  L++G  +       +EL    + K V  +A   + ++D L
Sbjct: 381 RLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL 440

Query: 217 AK 218
            K
Sbjct: 441 GK 442



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 106/218 (48%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK+  ++  + L+    +KG+  + + + +L  GL +  ++E A  LF+EM   
Sbjct: 400 VLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEK 459

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D+  Y   ID L K+G I +++ LF  +    C+  +  ++ LIDGL K  + E A
Sbjct: 460 GCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEA 519

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++ +  +    +   V ++  +  GL   G++ +A  +  D+    + P    F  +I+ 
Sbjct: 520 IKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPET-AFEDMINT 578

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  +L   + ++       I +++++ L K
Sbjct: 579 LCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRK 616



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 94/202 (46%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++ E+  +G+       N+L      +  VE    ++  M+ +G+     TY   ++GL 
Sbjct: 172 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 231

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
            + +I  + ++F  +   K   D   Y+ +I G CK+G+L+ A+E F  +    +  D +
Sbjct: 232 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 291

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY  +I   Y++   D    L+L+MEE  +     ++  +I G  +  +  +   +   M
Sbjct: 292 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 351

Query: 198 KEKNVMPDASIVSIVVDLLAKN 219
            +K    + +I + ++D  +KN
Sbjct: 352 NQKGCRANVAIYTALIDSYSKN 373



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +F E++  G+          I      G + E + ++R ++    +  +  Y+ L++GL 
Sbjct: 172 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 231

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
            S  +E A ++F  +  G +V D VTY+IMI G    G++ KA + F DME   V P+ I
Sbjct: 232 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 291

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
           T+ TLI       +    + L  +M+E+ +       S+V+  L K    + +   F   
Sbjct: 292 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 351

Query: 233 ERQ 235
            ++
Sbjct: 352 NQK 354



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 1/126 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  + E A+  + +M+ KGI P V     L IGL    +V RA K+ D++   
Sbjct: 505 ILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPM 564

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +T  +   I+ LCK   I E+ +L   +     E+  +  + LI+ L K+G  ++ 
Sbjct: 565 GIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLV 623

Query: 121 LELFHS 126
           ++L HS
Sbjct: 624 IKLMHS 629


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 3/219 (1%)

Query: 4   NGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
            G+CK + ++ A  L  +M+  K  KPD+V  N +  G  +  +V  A+++ + +   G 
Sbjct: 147 RGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGC 206

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRLEIA 120
             +  TYT  IDG CK+G + E+++LF+ L  R    E ++  ++ LI GLCK+ RLE A
Sbjct: 207 VPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L AD  TY+ ++ GL   G+  +   +F +M      P+V+T+ TL+H 
Sbjct: 267 FELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHA 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +        +++  M  K + PD +  +++++ L +N
Sbjct: 327 HCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFEN 365



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           LI+G+CK+  +  AL L+  + S+    +P+VV  N L  GL +  ++E AF+L  +M+ 
Sbjct: 216 LIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKA 275

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             + ADT TYT  +DGLCK G   E   +F  +    C   +  Y+ L+   CK+G L+ 
Sbjct: 276 RDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQD 335

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ++  S+    +  DV TY++++ GL+ +G++  A + F  +      P  + +  L+ 
Sbjct: 336 AQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVR 395

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +     + ++   +M ++ + PD +   ++V++L K 
Sbjct: 396 GCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKR 435



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 116/245 (47%), Gaps = 7/245 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G CK   +  A+  Y++ML +   P++   N L   L +  ++++A  +F  +Q  
Sbjct: 8   VLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRGIQ-- 65

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
             +    T  I I+G C+   + +++ELF  + +      +   Y+ +I   CK  RL+ 
Sbjct: 66  -CSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLI 178
           A +L          +DV+  + +  G     ++D+A+ L LDM E+ +  P+++ +  +I
Sbjct: 125 ARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVII 182

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           HGF +     +  E+L  +     +P+A   + ++D   K+     +L  F V   ++  
Sbjct: 183 HGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHH 242

Query: 239 DESNV 243
            E NV
Sbjct: 243 AEPNV 247



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK         ++ EML +G  P VV + TL     +   ++ A ++   M   G
Sbjct: 288 LMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKG 347

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ ++GL +NG +  + E F  +   +C      YS L+ G CK+  ++ A+
Sbjct: 348 IPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAV 407

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
           + +  +    L  D  T  +++  L   G+ D
Sbjct: 408 KYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 77/131 (58%), Gaps = 6/131 (4%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+++ I GLCK G + E+VE +  +    C  +++  + L+  LC++G+++ A+ +F   
Sbjct: 5   TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIF--- 61

Query: 128 PRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHGFIRIN 185
            RG+  +  V+T +I+I+G      +DKA +LF +ME+N A+ P   T+  +I  + +++
Sbjct: 62  -RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 186 EPSKVIELLHK 196
              +  +LL +
Sbjct: 121 RLDQARQLLEE 131


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 110/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I GYCK  +++ A+  + +M  K +KPD + + TL    +     +    L+ EM+  
Sbjct: 258 IMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEER 317

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     +Y++ I GLCK    +E+  +F T+    C  ++  Y+ LID   K+G +E A
Sbjct: 318 GLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEA 377

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +       D VTYS++++GL   G++D   +LF       VA N + + +LI G
Sbjct: 378 MRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDG 437

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +         L  +M EK    D+   + ++D LAK+
Sbjct: 438 LGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKH 476



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 112/216 (51%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK ++   A  ++  M  KG + +V I+  L     +   +E A +LF+ M+ +
Sbjct: 328 LVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNE 387

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY++ ++GLCK+G + + +ELF   R     ++   Y+ LIDGL K+GR+E A
Sbjct: 388 GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDA 447

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       D   Y+ +I  L   G++D+A  LF  MEE      V TF  LI G
Sbjct: 448 ENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDG 507

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDL 215
             + ++  + I+   KM +K + P  AS  ++ + L
Sbjct: 508 LFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 543



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 110/220 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y KN  +E A+ L+  M ++G +PD V ++ L  GL +  +++   +LFD  +  G
Sbjct: 364 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 423

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +   Y   IDGL K G I ++  LF  +    C  D   Y+ +ID L K G+++ AL
Sbjct: 424 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 483

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +        V T++I+I GL+ + + ++A   +  M +  + P V +F  L  G 
Sbjct: 484 ALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 543

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               + ++  ++L  +    ++P+ +   ++  L     I
Sbjct: 544 CLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKAQRI 583



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 35/242 (14%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E  L ++  M   GI P +  +N L  GL     +E A K+F+ M    +  DT TY I
Sbjct: 199 VEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNI 258

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELD-------IQA--------------------- 103
            I G CK G + +++E FR + +   + D       IQA                     
Sbjct: 259 MIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERG 318

Query: 104 -------YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
                  YS +I GLCK  +   A  +F ++ +    A+V  Y+ +I     +G M++A 
Sbjct: 319 LEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAM 378

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            LF  M+     P+ +T+  L++G  +       +EL    + K V  +A   + ++D L
Sbjct: 379 RLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL 438

Query: 217 AK 218
            K
Sbjct: 439 GK 440



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 106/218 (48%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK+  ++  + L+    +KG+  + + + +L  GL +  ++E A  LF+EM   
Sbjct: 398 VLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEK 457

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D+  Y   ID L K+G I +++ LF  +    C+  +  ++ LIDGL K  + E A
Sbjct: 458 GCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEA 517

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++ +  +    +   V ++  +  GL   G++ +A  +  D+    + P    F  +I+ 
Sbjct: 518 IKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPET-AFEDMINT 576

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  +L   + ++       I +++++ L K
Sbjct: 577 LCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRK 614



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 94/202 (46%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++ E+  +G+       N+L      +  VE    ++  M+ +G+     TY   ++GL 
Sbjct: 170 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 229

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
            + +I  + ++F  +   K   D   Y+ +I G CK+G+L+ A+E F  +    +  D +
Sbjct: 230 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 289

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY  +I   Y++   D    L+L+MEE  +     ++  +I G  +  +  +   +   M
Sbjct: 290 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 349

Query: 198 KEKNVMPDASIVSIVVDLLAKN 219
            +K    + +I + ++D  +KN
Sbjct: 350 NQKGCRANVAIYTALIDSYSKN 371



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 83/177 (46%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +F E++  G+          I      G + E + ++R ++    +  +  Y+ L++GL 
Sbjct: 170 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 229

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
            S  +E A ++F  +  G +V D VTY+IMI G    G++ KA + F DME   V P+ I
Sbjct: 230 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 289

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           T+ TLI       +    + L  +M+E+ +       S+V+  L K    + +   F
Sbjct: 290 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVF 346



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 1/126 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  + E A+  + +M+ KGI P V     L IGL    +V RA K+ D++   
Sbjct: 503 ILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPM 562

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +T  +   I+ LCK   I E+ +L   +     E+  +  + LI+ L K+G  ++ 
Sbjct: 563 GIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLV 621

Query: 121 LELFHS 126
           ++L HS
Sbjct: 622 IKLMHS 627


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 3/219 (1%)

Query: 4   NGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
            G+CK + ++ A  L  +M+  K  KPD+V  N +  G  +  +V  A+++ + +   G 
Sbjct: 147 RGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGC 206

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRLEIA 120
             +  TYT  IDG CK+G + E+++LF+ L  R    E ++  ++ LI GLCK+ RLE A
Sbjct: 207 VPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L AD  TY+ ++ GL   G+  +   +F +M      P+V+T+ TL+H 
Sbjct: 267 FELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHA 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +        +++  M  K + PD +  +++++ L +N
Sbjct: 327 HCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFEN 365



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           LI+G+CK+  +  AL L+  + S+    +P+VV  N L  GL +  ++E AF+L  +M+ 
Sbjct: 216 LIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKA 275

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             + ADT TYT  +DGLCK G   E   +F  +    C   +  Y+ L+   CK+G L+ 
Sbjct: 276 RDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQD 335

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ++  S+    +  DV TY++++ GL+ +G++  A + F  +      P  + +  L+ 
Sbjct: 336 AQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVR 395

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +     + ++   +M ++ + PD +   ++V++L K 
Sbjct: 396 GCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKR 435



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 115/245 (46%), Gaps = 7/245 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G CK   +  A+  Y++ML +   P++   N L   L +   +++A  +F  +Q  
Sbjct: 8   VLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGIQ-- 65

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
             +    T  I I+G C+   + +++ELF  + +      +   Y+ +I   CK  RL+ 
Sbjct: 66  -CSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLI 178
           A +L          +DV+  + +  G     ++D+A+ L LDM E+ +  P+++ +  +I
Sbjct: 125 ARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVII 182

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           HGF +     +  E+L  +     +P+A   + ++D   K+     +L  F V   ++  
Sbjct: 183 HGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHH 242

Query: 239 DESNV 243
            E NV
Sbjct: 243 AEPNV 247



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK         ++ EML +G  P VV + TL     +   ++ A ++   M   G
Sbjct: 288 LMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKG 347

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ ++GL +NG +  + E F  +   +C      YS L+ G CK+  ++ A+
Sbjct: 348 IPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAV 407

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
           + +  +    L  D  T  +++  L   G+ D
Sbjct: 408 KYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 76/131 (58%), Gaps = 6/131 (4%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+++ I GLCK G + E+VE +  +    C  +++  + L+  LC++G ++ A+ +F   
Sbjct: 5   TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIF--- 61

Query: 128 PRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHGFIRIN 185
            RG+  +  V+T +I+I+G      +DKA +LF +ME+N A+ P   T+  +I  + +++
Sbjct: 62  -RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 186 EPSKVIELLHK 196
              +  +LL +
Sbjct: 121 RLDQARQLLEE 131


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++  ++L  G +P      TL  GL    ++  A +LFD+M  +
Sbjct: 50  ILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GLCK+  + E++ LF  +       +   YS LI GLC  G  + A
Sbjct: 110 GFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEA 169

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQ---MDKAHDLFLDMEENAVAPNVITFGTL 177
           + LF+++    ++ D +T++ ++  L  +G    MDKA  LF +M +  + P+ +T+ TL
Sbjct: 170 IRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTL 229

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           IHG   +      I L H+M     +PD     I+ D L KN 
Sbjct: 230 IHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNH 272



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 3/169 (1%)

Query: 2   LINGYCKNKEIE---GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L++  CK   I+    A+ L+ EM  +G+ PD V +NTL  GL  + ++  A  LF EM 
Sbjct: 191 LVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMV 250

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G   D  TY I  D LCKN  + E++ L + +     + DI  YS ++DG+C++G LE
Sbjct: 251 VYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELE 310

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
            A +LF  L    L  DV TY+IMI+GL   G + +A  LF +M+EN +
Sbjct: 311 AARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDI 359



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK++++  AL+L+S+ML+KGI P+   +++L  GL  +   + A +LF  M    
Sbjct: 121 LINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRK 180

Query: 62  VAADTRTYTIFIDGLCKNGYIV---ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           +  D  T+   +D LCK G I    +++ LF  +       D   Y+ LI GLC  GRL 
Sbjct: 181 IMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLR 240

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ LFH +     + D+VTY I+   L  + ++ +A  L   +E   + P++  +  ++
Sbjct: 241 DAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVM 300

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            G  R  E     +L  K+  K + PD    +I+++ L + 
Sbjct: 301 DGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQ 341



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           ML     P +V  + L   +  +        L+ +M   G+  +T T  I I+  C    
Sbjct: 1   MLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +  +  +   +  L  +     ++ LI GLC  G++  AL+LF  +       DV+TY  
Sbjct: 61  LGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I+GL  D Q+ +A  LF DM    ++PN  T+ +LIHG   +    + I L + M  + 
Sbjct: 121 LINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRK 180

Query: 202 VMPDASIVSIVVDLLAK 218
           +MPD    + +VD L K
Sbjct: 181 IMPDQLTFNTLVDALCK 197



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +  CKN  +  A+ L   +    + PD+ I++ +  G+    ++E A  LF ++   
Sbjct: 263 ILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSK 322

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           G+  D RTYTI I+GLC+ G + E+ +LF  +     E DI++YS
Sbjct: 323 GLHPDVRTYTIMINGLCQQGLLAEASKLFGEMD----ENDIESYS 363


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 116/195 (59%), Gaps = 3/195 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  +++ A N++  M+ K +KP++V +N+L  G   +++V +A  +F+ M + 
Sbjct: 284 ILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQI 343

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D  +Y+I I G CK   + E+++LF  +   +   D+  Y+ LIDGLCKSGR+  A
Sbjct: 344 GVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYA 403

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +       +++TY+ ++  L  +  +DKA +L   ++++ + P+V T+  LI+G
Sbjct: 404 LKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILING 463

Query: 181 FI---RINEPSKVIE 192
                R+ +  KV E
Sbjct: 464 LCKSGRLKDAQKVFE 478



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A + YSEM++K I P VV +NTL  GL  + Q++ A  L  +M  + 
Sbjct: 215 IIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILEN 274

Query: 62  VAADTRTYTIFIDGLCK------------------------------NGYIV-----ESV 86
           +     T++I +D  CK                              NGY +     ++ 
Sbjct: 275 INPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAE 334

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F T+  +    D+ +YS +I G CK   ++ A++LF  +    +  DVVTY+ +I GL
Sbjct: 335 SIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++  A  L  +M +    PN+IT+ +L+    + +   K IELL K+K+ N+ P  
Sbjct: 395 CKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSV 454

Query: 207 SIVSIVVDLLAKN 219
              +I+++ L K+
Sbjct: 455 CTYNILINGLCKS 467



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 100/182 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC   E+  A ++++ M   G+ PDV  ++ +  G  +I  V+ A KLF+EM    
Sbjct: 320 LMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQ 379

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   IDGLCK+G I  +++L   +       +I  Y+ L+D LCK+  ++ A+
Sbjct: 380 IFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAI 439

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   L    +   V TY+I+I+GL   G++  A  +F D+  N    +V T+ T+I GF
Sbjct: 440 ELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGF 499

Query: 182 IR 183
            +
Sbjct: 500 CK 501



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+ + ++L+ G + + V + TL  GL ++ Q + A ++   +    
Sbjct: 145 LIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKL 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y   IDG+CK+  + ++ + +  +   +    +  Y+ LI GLC  G+L+ A+
Sbjct: 205 VRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAI 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L H +    +   V T+SI++     +G++ +A ++F+ M +  V PN++T+ +L++G+
Sbjct: 265 GLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGY 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +NE +K   + + M +  V PD    SI++    K
Sbjct: 325 CLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  + + AL +   +  K ++ DVV++NT+  G+ +   V  AF  + EM    
Sbjct: 180 LINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKR 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I GLC  G + +++ L   + +      +  +S L+D  CK G+++ A 
Sbjct: 240 ICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAK 299

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  ++VTY+ +++G     +++KA  +F  M +  VAP+V ++  +I GF
Sbjct: 300 NVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGF 359

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I    + ++L  +M  K + PD    + ++D L K+
Sbjct: 360 CKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKS 397



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 86/150 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+CK K ++ A+ L+ EM  K I PDVV +N+L  GL +  ++  A KL  EM   
Sbjct: 354 IMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDR 413

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   +D LCKN ++ +++EL   L+    +  +  Y+ LI+GLCKSGRL+ A
Sbjct: 414 GQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDA 473

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            ++F  +       DV TY+ MI G    G
Sbjct: 474 QKVFEDVLVNGYNIDVYTYNTMIKGFCKKG 503



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 103/203 (50%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           ++L+ +M   GI  ++V  + L     ++     +F +F  + + G   D  T T  I G
Sbjct: 89  VSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKG 148

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LC  G I +++     +  L  +L+  +Y  LI+GLCK G+ + ALE+   +   ++  D
Sbjct: 149 LCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLD 208

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VV Y+ +I G+  D  ++ A D + +M    + P V+T+ TLI G   + +    I LLH
Sbjct: 209 VVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLH 268

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           KM  +N+ P     SI+VD   K
Sbjct: 269 KMILENINPTVYTFSILVDAFCK 291



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN  ++ A+ L +++    I+P V  +N L  GL +  +++ A K+F+++  +G
Sbjct: 425 LLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNG 484

Query: 62  VAADTRTYTIFIDGLCKNGYIV 83
              D  TY   I G CK G+++
Sbjct: 485 YNIDVYTYNTMIKGFCKKGFVI 506



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           V L R +       ++   S LI+   + G   ++  +F ++ +     D +T + +I G
Sbjct: 89  VSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKG 148

Query: 146 LYNDGQMDKA---HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           L   G + KA   HD  L +       N +++ TLI+G  ++ +    +E+L ++  K V
Sbjct: 149 LCLKGDIHKALHFHDKVLAL---GFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLV 205

Query: 203 MPDASIVSIVVDLLAKNEI 221
             D  + + ++D + K+++
Sbjct: 206 RLDVVMYNTIIDGVCKDKL 224


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 121/218 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+N  ++ +  L   +   G+ P+VVI+ TL  G  +   +ERA   FD+M   
Sbjct: 167 IMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEM 226

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+  T+T+ I+GL K G   +  +LF  ++I     ++  Y+CL++  C  G++  A
Sbjct: 227 GLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRA 286

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    + A+VVTY+ +I G+  + ++ +A  L   M++ AV+PN+IT+ TLI G
Sbjct: 287 FDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGG 346

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F  +    K   LL ++K   + P     +I+++  +K
Sbjct: 347 FCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSK 384



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ + +  A  L  +M    + P+++ +NTL  G  ++  +++A  L D+++ +G
Sbjct: 308 LIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    TY I I+G  K G      +L R +            + LID   +   +E A 
Sbjct: 368 LSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAF 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +++ S+ +  LV DV  Y ++IHGL   G M ++  LF  M E  V P+ + + T+IHG+
Sbjct: 428 QIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGY 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + +   + + LL +M+ K ++P+ +  S ++ +L K+
Sbjct: 488 CKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKD 525



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN +IE A   + +M   G+  +      L  GLF+    +  F LF++M+ +G
Sbjct: 203 LIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKING 262

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ++  C  G I  + +LF  +R    E ++  Y+ LI G+C+  R+  A 
Sbjct: 263 LFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAE 322

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +++TY+ +I G  + G +DKA  L   ++ N ++P+++T+  LI G+
Sbjct: 323 KLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGY 382

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +      V +L  +M+ + + P     ++++D
Sbjct: 383 SKAGNWKGVADLAREMEGRGISPSKVTCTVLID 415



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING  K    +   +L+ +M   G+ P++  +N L        ++ RAF LFDEM+  
Sbjct: 237 VLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRER 296

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+  TY   I G+C+   + E+ +L   ++      ++  Y+ LI G C  G L+ A
Sbjct: 297 GVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKA 356

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   L    L   +VTY+I+I G    G      DL  +ME   ++P+ +T   LI  
Sbjct: 357 SSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDA 416

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           ++R+ E  K  ++   M++  ++PD  +  +++
Sbjct: 417 YVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLI 449



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 118/209 (56%), Gaps = 3/209 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN + K++ ++ AL  ++EM+ KG+     I N+L   L   +  E+A+  F+E+ ++ 
Sbjct: 99  IINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNEL-KER 157

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  ++ I I G C+NG + +S +L   L+ +    ++  Y+ LIDG CK+G +E A 
Sbjct: 158 VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERAR 217

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    LVA+  T++++I+GL+  G      DLF  M+ N + PN+ T+  L++ +
Sbjct: 218 LFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEY 277

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
               +  +  +L  +M+E+ V  +A++V+
Sbjct: 278 CGEGKICRAFDLFDEMRERGV--EANVVT 304



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 109/225 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N YC   +I  A +L+ EM  +G++ +VV +NTL  G+    +V  A KL D+M++  
Sbjct: 273 LMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAA 332

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY   I G C  G + ++  L   L+       +  Y+ LI+G  K+G  +   
Sbjct: 333 VSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVA 392

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +    VT +++I       +M+KA  ++  ME+  + P+V  +G LIHG 
Sbjct: 393 DLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGL 452

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
                  +  +L   M E +V P   I + ++    K + S  +L
Sbjct: 453 CMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRAL 497



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GY K    +G  +L  EM  +GI P  V    L      + ++E+AF+++  M++ 
Sbjct: 377 ILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKF 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + I GLC  G + ES +LFR++  +  E     Y+ +I G CK      A
Sbjct: 437 GLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRA 496

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           L L   +    LV +V +YS +I  L  DG+ ++A  L   M E  + P+ 
Sbjct: 497 LRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSA 547



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C    ++ A +L  ++ S G+ P +V +N L  G  +    +    L  EM+  G
Sbjct: 343 LIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRG 402

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    T T+ ID   +   + ++ +++ ++       D+  Y  LI GLC  G ++ + 
Sbjct: 403 ISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESS 462

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+    +    V Y+ MIHG   +    +A  L  +ME   + PNV ++ ++I   
Sbjct: 463 KLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVL 522

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  +   LL KM E  + P ASI++++    AKN
Sbjct: 523 CKDGKWEEAEVLLDKMIELQLKPSASILNMISK--AKN 558



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 1/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    ++   E A   ++E L + +K DV     +  G  E   ++++F+L   +Q  G
Sbjct: 134 LLGSLVRSNCFEKAWLFFNE-LKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMG 192

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +   YT  IDG CKNG I  +   F  +  +    +   ++ LI+GL K G  +   
Sbjct: 193 LSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGF 252

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    L  ++ TY+ +++    +G++ +A DLF +M E  V  NV+T+ TLI G 
Sbjct: 253 DLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGM 312

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     +  +L+ +MK+  V P+
Sbjct: 313 CREERVWEAEKLVDQMKKAAVSPN 336



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+  L +S   E A   F+ L   V   DV ++ IMI G   +G +DK+  L   ++
Sbjct: 131 FNSLLGSLVRSNCFEKAWLFFNELKERVKF-DVYSFGIMIKGCCENGNLDKSFQLLGLLQ 189

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  ++PNV+ + TLI G  +  +  +      KM E  ++ +    +++++ L K
Sbjct: 190 DMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFK 244


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 113/207 (54%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKNK+IE A  ++ +M  +G+  + V +NTL  GL +  +V+ A +L D+M  +G
Sbjct: 355 LIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +   C+ G I ++ ++ +T+    CE DI  Y  LI GLCK+GR+E+A 
Sbjct: 415 LKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVAS 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    +V     Y+ +I  L+   +  +A  LF +MEE    P+  T+  +  G 
Sbjct: 475 RLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGL 534

Query: 182 IRINEP-SKVIELLHKMKEKNVMPDAS 207
                P  + ++ + +M EK  +P+ S
Sbjct: 535 SNSGGPIGEAVDFVIEMIEKGFLPEFS 561



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 16/248 (6%)

Query: 4   NGYCKNKEIEGALN----------------LYSEMLSKGIKPDVVIHNTLFIGLFEIHQV 47
           +G+CK   IE AL+                LY+EM +KG +PD   +N L   L    ++
Sbjct: 271 HGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKL 330

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
           + A  L  EM+  G A +  TY   IDG CKN  I E+ E+F  + I     +   Y+ L
Sbjct: 331 QEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTL 390

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           IDGLCKS R++ A +L   +    L  D  TY+ M+     +G + KA D+   M  N  
Sbjct: 391 IDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGC 450

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
            P+++T+GTLI G  +         LL  ++ K ++      + V+  L K + +  ++ 
Sbjct: 451 EPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMR 510

Query: 228 SFTVHERQ 235
            F   E +
Sbjct: 511 LFREMEEK 518



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 16/221 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   CK  +I  A+ +  EM S G+ PD     TL  G  E   ++ AF++ ++M   
Sbjct: 198 ILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDA 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVE----------------SVELFRTLRILKCELDIQAY 104
           G      T  + + G CK G I E                ++EL+  ++   C+ D   Y
Sbjct: 258 GCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTY 317

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LID LC  G+L+ AL L   +       +V+TY+ +I G   + ++++A ++F  ME 
Sbjct: 318 NMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEI 377

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             ++ N +T+ TLI G  +     +  +L+ +M  + + PD
Sbjct: 378 QGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPD 418


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 108/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  E++ A  +  EM  KG+  D V +  L  G  ++ ++  AF + ++M +  
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR 455

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT   DGLCK G +  + EL   +     EL+I  Y+ LI+GLCK+G LE A+
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  DV TY+ +I  L    ++D+AH L  +M +  + P ++T+  L++GF
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                      LL  M EKN+ P+ +
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTT 601



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 109/203 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C+  ++  A N + EM  +G+  D V +  L  GL    +++ A ++  EM+  G
Sbjct: 361 VMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKG 420

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ IDG CK G + E+  +   +   +   ++  Y+ L DGLCK G +  A 
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAAN 480

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  ++ TY+ +I+GL   G +++A    +DM+E  + P+V T+ T+I   
Sbjct: 481 ELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGAL 540

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +  E  +   LL +M +K + P
Sbjct: 541 CQSKELDRAHSLLQEMLDKGIKP 563



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIK--------------------------PDVVIH 34
           I+++GYC   E+E A+ L SEM ++G++                           D+V+H
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 35  ---------NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                     T+  G      +  A   FDEMQ+ G+AAD  TYT  I+GLC+ G + E+
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             + + +     ++D   Y+ LIDG CK G++  A  + + + +  +  +VVTY+ +  G
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A++L  +M    +  N+ T+ +LI+G  +     + +  +  M E  + PD
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 206 ASIVSIVVDLLAKNE 220
               + ++  L +++
Sbjct: 530 VYTYTTIIGALCQSK 544



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    I+ A  L+ EM S    PDVV +  +  G   + ++E A KL  EM   
Sbjct: 258 ILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   YT  I  LC  G + ++V +   + +    LD   ++ ++ G C+ G L  A
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  + +  L AD VTY+ +I+GL   G++ +A  +  +ME+  +  + +T+  LI G
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + ++ + ++   + +KM +K V P+    + + D L K 
Sbjct: 435 YCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK  ++  A  ++++M+ K + P+VV +  L  GL +   V  A +L  EM   
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK G + +++     +     + D+  Y+ +I  LC+S  L+ A
Sbjct: 490 GLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRA 549

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +   +VTY+++++G    G+++    L   M E  + PN  T+ +L+  
Sbjct: 550 HSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +          E+   M  + V+P+ +  +I++
Sbjct: 610 YCIEKNMKSTTEIYKGMLSQEVVPNENTYNILI 642



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 12/225 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  ++  A  L  EM SKG++ ++  +N+L  GL +   +E+A +   +M   G
Sbjct: 466 LSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD------IQAYSCLIDGLCKSG 115
           +  D  TYT  I  LC      +S EL R   +L+  LD      I  Y+ L++G C SG
Sbjct: 526 LKPDVYTYTTIIGALC------QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R+E    L   +    +  +  TY+ ++     +  M    +++  M    V PN  T+ 
Sbjct: 580 RVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYN 639

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LI G  +     + +    +M EK     AS  + ++ LL K +
Sbjct: 640 ILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 1/224 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   +E A+    +M   G+KPDV  + T+   L +  +++RA  L  EM   G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + ++G C +G +     L   +       +   Y+ L+   C    ++   
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  +    +V +  TY+I+I G      M +A     +M E        ++  LI   
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLL 680

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  + ++   L  KM+++ +  +  + +  +D L+ NE +L S
Sbjct: 681 NKKKKFTEARRLFEKMRKERLTAEPDVYNFYID-LSFNEDNLES 723



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           GI P     N +   L     ++ A +LF E+       +T +Y I +  LC  G I ++
Sbjct: 221 GISPSPESCNAVLCRL----PLDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDA 272

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +LF     +    D+  Y  ++ G C    LE A++L   +    L  + V Y+ +I  
Sbjct: 273 HQLFDE---MASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIAL 329

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L ++GQ+  A  +  DM  + V  +   F T++ GF R  + +       +M+++ +  D
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAAD 389

Query: 206 ASIVSIVVDLLAK 218
               + +++ L +
Sbjct: 390 GVTYTALINGLCR 402



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +EG   L   ML K I P+   +N+L         ++   +++  M   
Sbjct: 570 VLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQ 629

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY I I G CK   + E++     +      L   +Y+ LI  L K  +   A
Sbjct: 630 EVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEA 689

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
             LF  + +  L A+   Y+  I   +N+  ++
Sbjct: 690 RRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLE 722



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 52/136 (38%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  YC  K ++    +Y  MLS+ + P+   +N L  G  +   ++ A     EM   G
Sbjct: 606 LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   I  L K     E+  LF  +R  +   +   Y+  ID       LE  L
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTL 725

Query: 122 ELFHSLPRGVLVADVV 137
            L   L    LV  + 
Sbjct: 726 ALCDELVEVTLVKSIA 741


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 118/255 (46%), Gaps = 41/255 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  ++E    L  EM+  G +PD   +NT+   L E  + E A K+ ++M    
Sbjct: 203 LLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKK 262

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
              D  TY   +DG CK   + E+  L   +   +C                        
Sbjct: 263 CGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAY 322

Query: 98  -----------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+  Y+CL+DGLCK+G+LE A EL   +       DVVTYSI+++GL
Sbjct: 323 RVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGL 382

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIELLHKMKEKNVM 203
              G++D A  L   M E    PN++TF T+I GF    +++E  KV+EL   MKE +  
Sbjct: 383 CKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLEL---MKEVSCT 439

Query: 204 PDASIVSIVVDLLAK 218
           PD    S ++D   K
Sbjct: 440 PDVVTYSTLIDGYCK 454



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK  +I+ A N+   ML +   PDV+ + +L +G  + + ++ A KL ++M+  G
Sbjct: 133 LIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESG 192

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT  Y   ++GLCK   + E  +L   +     E D  +Y+ ++  LC+SG+ E A 
Sbjct: 193 LTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAG 252

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +       DVVTY+ ++ G     +MD+A  L  DM     AP VIT+ TLI GF
Sbjct: 253 KILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGF 312

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R +  +    ++  M +  + PD    + ++D L K
Sbjct: 313 SRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCK 349



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  +++ A  L  +M+ +   P V+ + TL  G     ++  A+++ ++M + G
Sbjct: 273 LMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAG 332

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   +DGLCK G + E+ EL   +    C  D+  YS L++GLCK G+++ A 
Sbjct: 333 ISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDAR 392

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       ++VT++ MI G    G++D+ H +   M+E +  P+V+T+ TLI G+
Sbjct: 393 LLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGY 452

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
            + N       +L       + PD AS  S++  L +  ++
Sbjct: 453 CKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKV 487



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   ++ A  +       GI PD   ++++  GL    +VE A ++ D M + G
Sbjct: 448 LIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQG 501

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +  Y + I GLC      E++++ + +    CE ++  YS LI+GLCK+ R+E A+
Sbjct: 502 CPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAI 561

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     V DV TY+ +I G     +MD A+  F  M ++   P+ + +  LI GF
Sbjct: 562 NVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGF 621

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
            +     K IE++  M EK   PDA+
Sbjct: 622 CQSGNVEKAIEVMQLMLEKGCNPDAA 647



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+   ++ A  L  +M   G+ PD V +N L  GL + +Q+E   KL +EM   G
Sbjct: 168 LIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAG 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT +Y   +  LC++G   E+ ++   +   KC  D+  Y+ L+DG CK  +++ A 
Sbjct: 228 REPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAE 287

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +        V+TY+ +I G     ++  A+ +  DM +  ++P+++T+  L+ G 
Sbjct: 288 RLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGL 347

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +  ELL  M EK+  PD    SI+V+ L K
Sbjct: 348 CKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCK 384



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 110/218 (50%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ +    +  L + +EML++   PDV+ HNT+     +I  ++RA   F    +  
Sbjct: 30  LITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHF--RGKMW 87

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY I I GLC+   I E+ +L   +    C  D   Y+CLI GLCK G+++ A 
Sbjct: 88  CSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAAR 147

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     V DV+TY+ +I G      +D+A  L   M+E+ + P+ + +  L++G 
Sbjct: 148 NVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGL 207

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N+  +V +LL +M E    PD    + VV  L ++
Sbjct: 208 CKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCES 245



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK  +++ A  L   ML +G +P++V  NT+  G  +  +V+   K+ + M+  
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY+  IDG CK   + ++        IL    D  +YS +++GLC +G++E A
Sbjct: 437 SCTPDVVTYSTLIDGYCKANRMQDA------FAILGISPDKASYSSMLEGLCSTGKVEEA 490

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +         Y+++I GL +  + D+A  +   M E    PN+ T+  LI+G
Sbjct: 491 QEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILING 550

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       I +L  M EK  +PD +  + ++D   K
Sbjct: 551 LCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCK 588



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 6/212 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK  +++    +   M      PDVV ++TL  G  + ++++ AF +       G
Sbjct: 413 MIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------G 466

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  +Y+  ++GLC  G + E+ E+   +    C      Y+ +I GLC   R + AL
Sbjct: 467 ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEAL 526

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +       ++ TYSI+I+GL    +++ A ++   M E    P+V T+ +LI GF
Sbjct: 527 KMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGF 586

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +IN+     +    M++    PD    +I++
Sbjct: 587 CKINKMDAAYQCFKTMRDSGCEPDKLAYNILI 618



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 86/180 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C   ++E A  +   M  +G  P    +  +  GL ++ + + A K+   M   G
Sbjct: 477 MLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERG 536

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+I I+GLCK   + +++ +   +    C  D+  Y+ LIDG CK  +++ A 
Sbjct: 537 CEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAY 596

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F ++       D + Y+I+I G    G ++KA ++   M E    P+  T+ +L+   
Sbjct: 597 QCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 74/146 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C  +  + AL +   M  +G +P++  ++ L  GL +  +VE A  + D M   
Sbjct: 511 LIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEK 570

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  IDG CK   +  + + F+T+R   CE D  AY+ LI G C+SG +E A
Sbjct: 571 GCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKA 630

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGL 146
           +E+   +       D  TY  ++  L
Sbjct: 631 IEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
             Y  LI G  ++G  ++ LE+ + +       DV+T++ ++      G +D+A   F  
Sbjct: 25  STYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRG 84

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +   +P   T+  LIHG  +     +  +LL +M +K+  PDA++ + ++  L K
Sbjct: 85  --KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCK 139


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 108/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  E++ A  +  EM  KG+  D V +  L  G  ++ ++  AF + ++M +  
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR 455

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT   DGLCK G +  + EL   +     EL+I  Y+ LI+GLCK+G LE A+
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  DV TY+ +I  L    ++D+AH L  +M +  + P ++T+  L++GF
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                      LL  M EKN+ P+ +
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTT 601



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 109/203 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C+  ++  A N + EM  +G+  D V +  L  GL    +++ A ++  EM+  G
Sbjct: 361 VMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKG 420

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ IDG CK G + E+  +   +   +   ++  Y+ L DGLCK G +  A 
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAAN 480

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  ++ TY+ +I+GL   G +++A    +DM+E  + P+V T+ T+I   
Sbjct: 481 ELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGAL 540

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +  E  +   LL +M +K + P
Sbjct: 541 CQSKELDRAHSLLQEMLDKGIKP 563



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIK--------------------------PDVVIH 34
           I+++GYC   E+E A+ L SEM ++G++                           D+V+H
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 35  ---------NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                     T+  G      +  A   FDEMQ+ G+AAD  TYT  I+GLC+ G + E+
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             + + +     ++D   Y+ LIDG CK G++  A  + + + +  +  +VVTY+ +  G
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A++L  +M    +  N+ T+ +LI+G  +     + +  +  M E  + PD
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 206 ASIVSIVVDLLAKNE 220
               + ++  L +++
Sbjct: 530 VYTYTTIIGALCQSK 544



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    I+ A  L+ EM S    PDVV +  +  G   + ++E A KL  EM   
Sbjct: 258 ILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   YT  I  LC  G + ++V +   + +    LD   ++ ++ G C+ G L  A
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  + +  L AD VTY+ +I+GL   G++ +A  +  +ME+  +  + +T+  LI G
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + ++ + ++   + +KM +K V P+    + + D L K 
Sbjct: 435 YCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK  ++  A  ++++M+ K + P+VV +  L  GL +   V  A +L  EM   
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK G + +++     +     + D+  Y+ +I  LC+S  L+ A
Sbjct: 490 GLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRA 549

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +   +VTY+++++G    G+++    L   M E  + PN  T+ +L+  
Sbjct: 550 HSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +          E+   M  + V+P+ +  +I++
Sbjct: 610 YCIEKNMKSTTEIYKGMLSQEVVPNENTYNILI 642



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 12/225 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  ++  A  L  EM SKG++ ++  +N+L  GL +   +E+A +   +M   G
Sbjct: 466 LSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD------IQAYSCLIDGLCKSG 115
           +  D  TYT  I  LC      +S EL R   +L+  LD      I  Y+ L++G C SG
Sbjct: 526 LKPDVYTYTTIIGALC------QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R+E    L   +    +  +  TY+ ++     +  M    +++  M    V PN  T+ 
Sbjct: 580 RVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYN 639

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LI G  +     + +    +M EK     AS  + ++ LL K +
Sbjct: 640 ILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 1/224 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   +E A+    +M   G+KPDV  + T+   L +  +++RA  L  EM   G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + ++G C +G +     L   +       +   Y+ L+   C    ++   
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  +    +V +  TY+I+I G      M +A     +M E        ++  LI   
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLL 680

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  + ++   L  KM++  +  +  + +  +D L+ NE +L S
Sbjct: 681 NKKKKFTEARRLFEKMRKDRLTAEPDVYNFYID-LSFNEDNLES 723



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           GI P     N +   L     ++ A +LF E+       +T +Y I +  LC  G I ++
Sbjct: 221 GISPSPESCNAVLCRL----PLDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDA 272

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +LF     +    D+  Y  ++ G C    LE A++L   +    L  + V Y+ +I  
Sbjct: 273 HQLFDE---MASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIAL 329

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L ++GQ+  A  +  DM  + V  +   F T++ GF R  + +       +M+++ +  D
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAAD 389

Query: 206 ASIVSIVVDLLAK 218
               + +++ L +
Sbjct: 390 GVTYTALINGLCR 402



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +EG   L   ML K I P+   +N+L         ++   +++  M   
Sbjct: 570 VLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQ 629

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY I I G CK   + E++     +      L   +Y+ LI  L K  +   A
Sbjct: 630 EVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEA 689

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
             LF  + +  L A+   Y+  I   +N+  ++
Sbjct: 690 RRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLE 722



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 52/136 (38%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  YC  K ++    +Y  MLS+ + P+   +N L  G  +   ++ A     EM   G
Sbjct: 606 LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   I  L K     E+  LF  +R  +   +   Y+  ID       LE  L
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTL 725

Query: 122 ELFHSLPRGVLVADVV 137
            L   L    LV  + 
Sbjct: 726 ALCDELVEVTLVKSIA 741


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 122/216 (56%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 129 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 188

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 189 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 248

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G +++AH L  +M    + P+  T+ TLI G
Sbjct: 249 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDG 308

Query: 181 FIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDL 215
             +  +     E   +M ++N+ + D +  +I+  L
Sbjct: 309 CCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGL 344



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 98/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   + +A  L DEM   G
Sbjct: 235 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKG 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ +I GLC+ GR   A 
Sbjct: 295 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAE 354

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ N   P+V T+  L++G
Sbjct: 355 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 224

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L  A 
Sbjct: 225 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAH 284

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  +I G 
Sbjct: 285 GLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGL 344

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   P    ++L +M    + PD    +++++   K 
Sbjct: 345 CQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 382



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 199 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 259 SLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAA 318

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 319 FEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINE 378

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 379 FCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMN 412



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 49  RAFKL----FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           R FKL    ++E+   G  A    + I +   CK+G I  +  +F  +        + +Y
Sbjct: 103 RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 162

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF +M  
Sbjct: 163 NTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 222

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 223 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 263



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 115 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 174

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 175 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 234

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 235 LIDGHCKN 242



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 52  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGF 111

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 112 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 171

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 172 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 206


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 120/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR + A 
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    LV DV TYS+M   L   G +++  DLFL MEEN    N     +++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  + ++    L  + EK+   +AS  S+ +DLL+  +
Sbjct: 735 LQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGK 773



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++ A   Y EML +GI P+VV ++++   L +   +++A ++   M ++G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTY   + G C +G   E++   + +     E D+  Y+ L+D LCK+GR   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + PN   F  LI  +
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + PD      V+ +L K+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L + M+S G+KPD V +NTL  G  +I ++E A  LF EM+  G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF  +  N + P+V T+  +    
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     ++ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 700 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 759

Query: 241 SNV 243
           S  
Sbjct: 760 STA 762



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 119/223 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ + + P  +++N+L   L    + ++A +L  EM   G+  DT
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + DI  YS LIDG C +G+++ A +L  S
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTY+ +I+G     +M+ A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + E     + S  +I++  L KN ++  +L  F
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMF 642



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + + A  L  EML +GI  D +  N++     +  +V  + KLFD M R G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG C  G + E+ +L  ++  +  + D   Y+ LI+G CK  R+E AL
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           IL+   C    ++        ++ KG   D +    +  GL    +   A  +    M +
Sbjct: 96  ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  +Y I + GLC +    E++EL + +      C  D+ +Y+ +I+G  K G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 118 EIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A   +H  L RG+L  +VVTYS +I  L     MDKA ++   M +N V PN  T+ +
Sbjct: 216 DKAYGTYHEMLDRGIL-PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++HG+    +P + I  L KM    V PD    + ++D L KN
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ + + M+  G+ P+   +N++  G     Q + A     +M  DG
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +D LCKNG   E+ ++F ++     + +I  Y  L+ G    G L    
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +   +SI+I      G++D+A  +F  M +  + P+ +T+GT+I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +       +    +M ++ + P
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSP 442



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I I    K G + +++ +F  +R      D   Y  +I  LCKSGR+E A+
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L    + Y+ +IH L    + DKA +L L+M +  +  + I F ++I   
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  K+ +L+ ++    V PD    S ++D
Sbjct: 490 CKEGRVIESEKLFDLMVRI---GVKPDIITYSTLID 522


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 108/206 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+  E++ A  +  EM  KG+  D V +  L  G  ++ ++  AF + ++M +  
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR 455

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT   DGLCK G +  + EL   +     EL+I  Y+ LI+GLCK+G LE A+
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  DV TY+ +I  L    ++D+AH L  +M +  + P ++T+  L++GF
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                      LL  M EKN+ P+ +
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTT 601



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 109/203 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C+  ++  A N + EM  +G+  D V +  L  GL    +++ A ++  EM+  G
Sbjct: 361 VMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKG 420

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ IDG CK G + E+  +   +   +   ++  Y+ L DGLCK G +  A 
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAAN 480

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H +    L  ++ TY+ +I+GL   G +++A    +DM+E  + P+V T+ T+I   
Sbjct: 481 ELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGAL 540

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +  E  +   LL +M +K + P
Sbjct: 541 CQSKELDRAHSLLQEMLDKGIKP 563



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIK--------------------------PDVVIH 34
           I+++GYC   E+E A+ L SEM ++G++                           D+V+H
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 35  ---------NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                     T+  G      +  A   FDEMQ+ G+AAD  TYT  I+GLC+ G + E+
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             + + +     ++D   Y+ LIDG CK G++  A  + + + +  +  +VVTY+ +  G
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A++L  +M    +  N+ T+ +LI+G  +     + +  +  M E  + PD
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 206 ASIVSIVVDLLAKNE 220
               + ++  L +++
Sbjct: 530 VYTYTTIIGALCQSK 544



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   C    I+ A  L+ EM S    PDVV +  +  G   + ++E A KL  EM   
Sbjct: 258 ILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   YT  I  LC  G + ++V +   + +    LD   ++ ++ G C+ G L  A
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  + +  L AD VTY+ +I+GL   G++ +A  +  +ME+  +  + +T+  LI G
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + ++ + ++   + +KM +K V P+    + + D L K 
Sbjct: 435 YCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK  ++  A  ++++M+ K + P+VV +  L  GL +   V  A +L  EM   
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK G + +++     +     + D+  Y+ +I  LC+S  L+ A
Sbjct: 490 GLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRA 549

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +   +VTY+++++G    G+++    L   M E  + PN  T+ +L+  
Sbjct: 550 HSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +          E+   M  + V+P+ +  +I++
Sbjct: 610 YCIEKNMKSTTEIYKGMLSQEVVPNENTYNILI 642



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 12/225 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK  ++  A  L  EM SKG++ ++  +N+L  GL +   +E+A +   +M   G
Sbjct: 466 LSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD------IQAYSCLIDGLCKSG 115
           +  D  TYT  I  LC      +S EL R   +L+  LD      I  Y+ L++G C SG
Sbjct: 526 LKPDVYTYTTIIGALC------QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R+E    L   +    +  +  TY+ ++     +  M    +++  M    V PN  T+ 
Sbjct: 580 RVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYN 639

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LI G  +     + +    +M EK     AS  + ++ LL K +
Sbjct: 640 ILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 1/224 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   +E A+    +M   G+KPDV  + T+   L +  +++RA  L  EM   G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + ++G C +G +     L   +       +   Y+ L+   C    ++   
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  +    +V +  TY+I+I G      M +A     +M E        ++  LI   
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLL 680

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  + ++   L  KM+++ +  +  + +  +D L+ NE +L S
Sbjct: 681 NKKKKFTEARRLFEKMRKERLTAEPDVYNFYID-LSFNEDNLES 723



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           GI P     N +   L     ++ A +LF E+       +T +Y I +  LC  G I ++
Sbjct: 221 GISPSPESCNAVLCRL----PLDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDA 272

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +LF     +    D+  Y  ++ G C    LE A++L   +    L  + V Y+ +I  
Sbjct: 273 HQLFDE---MASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIAL 329

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L ++GQ+  A  +  DM  + V  +   F T++ GF R  + +       +M+++ +  D
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAAD 389

Query: 206 ASIVSIVVDLLAK 218
               + +++ L +
Sbjct: 390 GVTYTALINGLCR 402



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +EG   L   ML K I P+   +N+L         ++   +++  M   
Sbjct: 570 VLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQ 629

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY I I G CK   + E++     +      L   +Y+ LI  L K  +   A
Sbjct: 630 EVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEA 689

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
             LF  + +  L A+   Y+  I   +N+  ++
Sbjct: 690 RRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLE 722



 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 52/136 (38%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  YC  K ++    +Y  MLS+ + P+   +N L  G  +   ++ A     EM   G
Sbjct: 606 LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   I  L K     E+  LF  +R  +   +   Y+  ID       LE  L
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTL 725

Query: 122 ELFHSLPRGVLVADVV 137
            L   L    LV  + 
Sbjct: 726 ALCDELVEVTLVKSIA 741


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 112/209 (53%), Gaps = 4/209 (1%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LING+C    +  A +++  M+SKG  PDVV +NTL  G  +  +VE   KLF EM   G
Sbjct: 831  LINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQG 890

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
            +  D  TY   I G C+ G +  + ++F   R++ C +  DI  Y+ L+D LC +G++E 
Sbjct: 891  LVGDAFTYNTLIHGYCQAGKLNVAQKVFN--RMVDCGVPPDIVTYNILLDCLCNNGKIEK 948

Query: 120  ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            AL +   L +  +  D++TY+I+I G+  + ++ +A  LF  +    V  + I + T+I 
Sbjct: 949  ALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMIS 1008

Query: 180  GFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G  R     +  +L  +MKE   MP   I
Sbjct: 1009 GLCRNGLRREADKLCTRMKEDGFMPSERI 1037



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 104/205 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C +  +  A   +  M SKG  P+VV +NTL  G  +  +VE   KLF  M R+G
Sbjct: 282 LINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREG 341

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I G C+ G +  + ++F  +       DI  +  L+ GLC +G +  A+
Sbjct: 342 LVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAM 401

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +  G     +V Y+IMIHGL    ++++A +LF  +    V P+  T+  +I G 
Sbjct: 402 VKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGL 461

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +     +  EL  +MKE  ++  A
Sbjct: 462 CKNGPRREADELFRRMKEDGIICQA 486



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 110/205 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+    + A++L   M   G++P+VVI+NT+  GL +   +  A ++F  M++ G
Sbjct: 691 LLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKG 750

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I GLC +G   ++  L R +   K + ++  ++ LID   K G L  A 
Sbjct: 751 IVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAK 810

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  +  +++TY+ +I+G    G++  A  +F  M      P+V+T+ TLI GF
Sbjct: 811 NLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGF 870

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +       ++L  +M  + ++ DA
Sbjct: 871 CKSKRVEDGMKLFCEMTHQGLVGDA 895



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K   ++ A  LY +ML   I P+ V +N+L  GL    ++  A K FD M   G
Sbjct: 247 LIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I+G CK+  + + ++LF+ +       D   Y+ LI G C+ G+L +A 
Sbjct: 307 CFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAK 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    +  D++T+ I++HGL  +G++  A   F DM        ++ +  +IHG 
Sbjct: 367 DIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGL 426

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + ++  +  EL  ++  + V PDA   +I++  L KN
Sbjct: 427 CKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKN 464



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CKN+++  AL ++  M  KGI  D V +NTL  GL    +   A +L  +M +  
Sbjct: 726 VINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRK 785

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  ID   K G ++E+  L++ +       +I  Y+ LI+G C  GRL  A 
Sbjct: 786 IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAK 845

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       DVVTY+ +I G     +++    LF +M    +  +  T+ TLIHG+
Sbjct: 846 HMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGY 905

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + +   ++ ++M +  V PD    +I++D L  N
Sbjct: 906 CQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNN 943



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+   +  AL++  +M+  G  P +V   +L  G    +++  AF L   M + 
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G   +   Y   ID LCKNG +  ++EL   + +  +   D+  Y+ L+ GLC SG    
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +   + +  +  DV T++ +I      G +D+A +L+  M ++++ PN +T+ +LI+
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 180 GFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
           G     R+    K  +L   M  K   P+    + +++   K+    + +  F    R+ 
Sbjct: 285 GLCMHGRLYHAKKTFDL---MASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREG 341

Query: 237 EVDES 241
            V ++
Sbjct: 342 LVGDT 346



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+  CKN ++  AL L +EM  KG +  D+V +NTL  GL    +  +A ++  +M + 
Sbjct: 176 LIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKR 235

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T+T  ID   K G + E+ EL++ +       +   Y+ LI+GLC  GRL  A
Sbjct: 236 RINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHA 295

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +       +VVTY+ +I+G     +++    LF  M    +  +  T+ TLIHG
Sbjct: 296 KKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHG 355

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + ++ +     ++   M    V PD
Sbjct: 356 YCQVGKLRVAKDIFSWMVSCGVTPD 380



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+      AL L  +M+  G +P +V   +L  G  + ++ + A  L D M   
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAEL 714

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   I+GLCKN  +  ++E+F  +       D   Y+ LI GLC SGR   A
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA 774

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +  +V+ ++ +I     +G + +A +L+ +M   +V PN++T+ +LI+G
Sbjct: 775 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLING 834

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F    R+ +   + +L   M  K   PD    + ++    K++
Sbjct: 835 FCIQGRLGDAKHMFDL---MVSKGCFPDVVTYNTLITGFCKSK 874



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 92/188 (48%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L+ +M + GI  D+     L        +   A  L  +M + G      T    ++G C
Sbjct: 637 LFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFC 696

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           +     E+V L  ++  L  E ++  Y+ +I+GLCK+  L  ALE+F+ + +  +VAD V
Sbjct: 697 QGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAV 756

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+ +I GL N G+   A  L  DM +  + PNVI F  LI  F++     +   L  +M
Sbjct: 757 TYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEM 816

Query: 198 KEKNVMPD 205
             ++V P+
Sbjct: 817 IRRSVHPN 824



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 36/241 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L  G+  +   E AL+L+ EM+     P VV    L   +  + + E       +M+  G
Sbjct: 36  LRTGFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFG 95

Query: 62  VAADTRTYTIFIDGLC----------------KNGY-------------------IVESV 86
           ++ D  ++TI I   C                K GY                   I ++ 
Sbjct: 96  ISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAF 155

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHG 145
            L  ++     E ++  Y+ LID LCK+G + IALEL + +  +G L AD+VTY+ ++ G
Sbjct: 156 SLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTG 215

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+  +A  +  DM +  + P+V TF  LI  F++     +  EL  +M + ++ P+
Sbjct: 216 LCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPN 275

Query: 206 A 206
            
Sbjct: 276 T 276



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 98/208 (47%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           + + A  L+ EML     P +V    +   + ++++ +    LF +M+  G++ D  ++T
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I   C+      ++ L   +  L  +  I     L++G C+  R + A+ L  S+   
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAEL 714

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            L  +VV Y+ +I+GL  +  ++ A ++F  ME+  +  + +T+ TLI G       +  
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA 774

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
             LL  M ++ + P+    + ++D   K
Sbjct: 775 ARLLRDMVKRKIDPNVIFFTALIDTFVK 802



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+  ++  A +++S M+S G+ PD++ H  L  GL    ++  A   F++M+   
Sbjct: 352 LIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGE 411

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y I I GLCK   + E+ ELF  L +   + D + Y+ +I GLCK+G    A 
Sbjct: 412 KYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREAD 471

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYN 148
           ELF  +    ++       +  HG  N
Sbjct: 472 ELFRRMKEDGIICQAEDGHLGEHGTNN 498



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N EI  A+  +++M S      +V +N +  GL +  +VE A++LF  +  +
Sbjct: 386 ILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVE 445

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           GV  D RTYTI I GLCKNG   E+ ELFR ++
Sbjct: 446 GVKPDARTYTIMILGLCKNGPRREADELFRRMK 478



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 2/179 (1%)

Query: 43  EIH--QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           E+H  + + AF LF EM +         +T  +  + K       + LF  +  L    D
Sbjct: 590 ELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHD 649

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ LI   C+  R  +AL L   + +      +VT   +++G     +  +A  L  
Sbjct: 650 LYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVD 709

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            M E  + PNV+ + T+I+G  +  + +  +E+ + M++K ++ DA   + ++  L  +
Sbjct: 710 SMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNS 768



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 70/138 (50%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ ++  + K  + +I + LFH +    +  D+ +++I+IH      +   A  L   M 
Sbjct: 618 FTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMM 677

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
           +    P+++T G+L++GF + N   + + L+  M E  + P+  I + V++ L KN    
Sbjct: 678 KLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLN 737

Query: 224 NSLPSFTVHERQEEVDES 241
           N+L  F   E++  V ++
Sbjct: 738 NALEIFYGMEKKGIVADA 755



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            IL++  C N +IE AL +  ++    +  D++ +N +  G+    +V+ A+ LF  + R 
Sbjct: 935  ILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRK 994

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVEL 88
            GV  D   Y   I GLC+NG   E+ +L
Sbjct: 995  GVKLDAIAYITMISGLCRNGLRREADKL 1022



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 43/85 (50%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ +++I+IH      ++  A  +   M +    P+++TFG+L+HGF   N       L+
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
             M +    P+  + + ++D L KN
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKN 183



 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK  ++E A  L+  +  +G+KPD   +  + +GL +      A +LF  M+ D
Sbjct: 421 IMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKED 480

Query: 61  GV 62
           G+
Sbjct: 481 GI 482



 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            I+I G C+N +++ A  L+  +  KG+K D + + T+  GL        A KL   M+ D
Sbjct: 970  IIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKED 1029

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
            G     R Y    D   ++ Y   S EL + +
Sbjct: 1030 GFMPSERIY----DETLRDHYTSLSAELIKAV 1057


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 117/216 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    +++++F+ L ++  +L+ + ++ +ID L K GR + A 
Sbjct: 612 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV +  TY +M   +   G +++   LFL ME+N    +      ++   
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 731

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  E ++    L  + EK+   +AS  S+ +DLL+
Sbjct: 732 LQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLS 767



 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  + + A + Y EML +GI PDVV +N++   L +   +++A ++ + M ++G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   + G C +G   E++   + +R    E D+  YS L+D LCK+GR   A 
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + P+   F  LI  +
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +  + + +  KM+++ + P+A     V+ +L K+
Sbjct: 382 ANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 125/223 (56%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ +G+ P  +++N+L  GL   ++ ERA +L  EM   G+  +T
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + ++  Y+ LI+G C +G+++ A++L   
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  + VTYS +I+G     +M+ A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL  ++ E     + S  +I++  L KN+++ ++L  F
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC   +++ A+ L S M+S G+KP+ V ++TL  G  +I ++E A  LF EM+  G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     ++++  Y+ ++ GLCK+   + AL
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F +L    L  +  T++IMI  L   G+ D+A DLF+    N + PN  T+  +    
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
           I      ++ +L   M++     D+ +++ +V +LL + EI+
Sbjct: 697 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C+   ++        ++ KG + D +    L  GL    +   A  +    M  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   +  +Y I + GLC      E++EL   +   R      D+ +Y+ +I+G  K G 
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 117 LEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            + A   +H  L RG+L  DVVTY+ +I  L     MDKA ++   M +N V P+ +T+ 
Sbjct: 212 SDKAYSTYHEMLDRGIL-PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +++HG+    +P + I  L KM+   V PD    S+++D L KN
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   + E A  L  EML +GI  + +  N++     +  +V  + KLF+ M R G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I+G C  G + E+++L   +  +  + +   YS LI+G CK  R+E AL
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       +++   +   ++  +A   +I++D L K
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLK 663



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 3/203 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   ++I I      G + +++ +F  +R      +   Y  +I  LCKSGR+E A
Sbjct: 366 GIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F  +    L    + Y+ +IHGL    + ++A +L L+M +  +  N I F ++I  
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485

Query: 181 FI---RINEPSKVIELLHKMKEK 200
                R+ E  K+ EL+ ++  K
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVK 508



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 3/155 (1%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYS 105
           E A  +FDE+ R G  A        +  + ++          R  R    E+  D+  Y 
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     D + ++ ++ GL  D +   A D+ L  M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
               PNV ++  L+ G    N   + +ELLH M +
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186



 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 56/120 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKNK  + AL ++  +    +K +    N +   L ++ + + A  LF     +
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY +  + +   G + E  +LF ++    C +D    + ++  L + G +  A
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 131/242 (54%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK   +E + +LY +M+  GI PDVV  +++  G     ++  A  LF EM   G
Sbjct: 327 LIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMG 386

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y   I+ L K+G ++E+  L   + +     DI   + ++DGL K G+ + A 
Sbjct: 387 LDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAE 446

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F ++ +  L  + VTYS ++ G    G+M+ A  +   ME+  V PNVITF ++I+G+
Sbjct: 447 EVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGY 506

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +    SK +++L +M ++NVMP+  + +I++D   K     +    F    +   ++ES
Sbjct: 507 AKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAG-EQDVADDFCKEMKSRRLEES 565

Query: 242 NV 243
           NV
Sbjct: 566 NV 567



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+C++ ++  A  L+ EM   G+ P+ V + T+   LF+  +V  AF L  +M   G
Sbjct: 362 ILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  T T  +DGL K G   E+ E+F T+  L    +   YS L+DG CK G++E+A 
Sbjct: 422 ISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAE 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  +V+T+S +I+G    G + KA D+  +M +  V PN I +  LI G+
Sbjct: 482 LVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGY 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E     +   +MK + +     I  I+++ L +
Sbjct: 542 FKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKR 578



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 120/236 (50%), Gaps = 19/236 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-------------------KGIKPDVVIHNTLFIGLF 42
           L+  +CK  ++  A +L++E+L                    K ++P +V + TL     
Sbjct: 273 LLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYC 332

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           +   VE +  L+ +M  +G+  D  T +  + G C++G + E+  LFR +  +  + +  
Sbjct: 333 KFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHV 392

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +Y+ +I+ L KSGR+  A  L   +    +  D+VT + ++ GL+  G+  +A ++F  +
Sbjct: 393 SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 452

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +APN +T+  L+ G+ ++ +      +L KM++++V P+    S +++  AK
Sbjct: 453 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAK 508



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 19/237 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+   ++    L SEM+ +G+  D +  N L  G   I  V+ A  +   +   G
Sbjct: 168 VIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGG 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D       IDG C+ G + ++ EL         ++DI  Y+ L+   CK+G L  A 
Sbjct: 228 VTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAE 287

Query: 122 ELFHSLPRGV-------------------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            LF+ +                       L   +VTY+ +I        ++++H L+  M
Sbjct: 288 SLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKM 347

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             N + P+V+T  ++++GF R  + ++   L  +M E  + P+    + +++ L K+
Sbjct: 348 IMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKS 404



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 19/237 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ GYC+   ++ A  +   ++  G+  DV+  NTL  G  E   + +A +L +   R 
Sbjct: 202 ILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRS 261

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-------------------RILKCELDI 101
            V  D  TY   +   CK G +  +  LF  +                    I   +  +
Sbjct: 262 DVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTL 321

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
             Y+ LI   CK   +E +  L+  +    ++ DVVT S +++G    G++ +A  LF +
Sbjct: 322 VTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFRE 381

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M E  + PN +++ T+I+   +     +   L  +M  + +  D    + V+D L K
Sbjct: 382 MYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFK 438



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  Y ++++ +  L ++ ++++ G++  + ++NTL      +    +A  + DEM + G
Sbjct: 746 LVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRG 805

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG----RL 117
           ++AD  TY   I G C   ++ ++++ +  + +     +I  Y+ L+ GL  +G     +
Sbjct: 806 ISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMM 865

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           E   +L   +    LV +  TY I++ G    G   K   L ++M      P + T+  L
Sbjct: 866 EETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVL 925

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
           I  + +  +  +  ELL+ +  K  +P+    S   D+L    ++L+  P
Sbjct: 926 ISDYAKSGKMIEARELLNDLLTKGRIPN----SFTYDILTCGWLNLSYEP 971



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY K  E + A +   EM S+ ++   VI + L   L  + +++ A  L  +M   
Sbjct: 536 ILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSK 595

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   IDG  K G  + ++ + + ++      D+ AY+ LI GL + G+ +  
Sbjct: 596 GIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPR 655

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 +  G L  D +TY+ +I+     G+ + A D+  +M+   + PN +T+  LI G
Sbjct: 656 YVCSRMIELG-LAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGG 714

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +     K    L +M     +P       +V   +++E
Sbjct: 715 LCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSE 754



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 39/233 (16%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           S M+  G+ PD + +NT+        + E A  + +EM+  G+  +  TY I I GLCK 
Sbjct: 659 SRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKT 718

Query: 80  GYIVES-----------------------------------VELFRTLRILKCELDIQAY 104
           G + ++                                   +++   L     EL +  Y
Sbjct: 719 GAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVY 778

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI   C+ G    A  +   + +  + AD+VTY+ +I G      ++KA   +  M  
Sbjct: 779 NTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFV 838

Query: 165 NAVAPNVITFGTLIHGF----IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +APN+ T+ TL+ G     +      +  +L+ +M E+ ++P+A+   I+V
Sbjct: 839 DGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILV 891



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 36/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK  ++E A  +  +M  + + P+V+  +++  G  +   + +A  +  EM +  
Sbjct: 467 LLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRN 526

Query: 62  VAADTRTYTIFIDGLCKNG---------------YIVESVELFRTL-------------R 93
           V  +T  Y I IDG  K G                + ES  +F  L             R
Sbjct: 527 VMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEAR 586

Query: 94  ILKCEL-------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L  ++       DI  Y+ LIDG  K G    AL +   +    +  DVV Y+ +I GL
Sbjct: 587 SLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGL 646

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+ D  + +   M E  +AP+ IT+ T+I+ +    +    +++L++MK   +MP+A
Sbjct: 647 LRLGKYDPRY-VCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNA 705

Query: 207 SIVSIVVDLLAKN 219
              +I++  L K 
Sbjct: 706 VTYNILIGGLCKT 718



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 1/197 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N   +   ++ A +L  +M SKGI PD+V + +L  G F+      A  +  EM+  
Sbjct: 571 ILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEK 630

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y   I GL + G         R +  L    D   Y+ +I+  C  G+ E A
Sbjct: 631 NIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIE-LGLAPDCITYNTIINTYCIKGKTEDA 689

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++ + +    ++ + VTY+I+I GL   G ++KA     +M      P  IT   L+  
Sbjct: 690 LDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKA 749

Query: 181 FIRINEPSKVIELLHKM 197
           + R  +  K++++  K+
Sbjct: 750 YSRSEKADKILQIHEKL 766



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK   +E A +   EML     P  + H  L        + ++  ++ +++   
Sbjct: 710 ILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVAS 769

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   I   C+ G   ++  +   +       D+  Y+ LI G C    +E A
Sbjct: 770 GLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKA 829

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG----QMDKAHDLFLDMEENAVAPNVITFGT 176
           L+ +  +    +  ++ TY+ ++ GL N G     M++   L  +M E  + PN  T+  
Sbjct: 830 LKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDI 889

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L+ G+ R+    K I L  +M  K  +P     ++++   AK+
Sbjct: 890 LVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKS 932



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 2/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  Y  +     A   +S M + G+ P +   NTL         V +   ++ +M   G
Sbjct: 65  LIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCG 124

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +  + +  LCK G +  ++   R   ++  ++D   Y+ +I G C+ G ++   
Sbjct: 125 VVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVV--DIDNVTYNTVIWGFCQKGLVDQGF 182

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  L  D +T +I++ G    G +  A  +  ++ +  V  +VI   TLI G+
Sbjct: 183 GLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGY 242

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                 S+  EL+      +V  D
Sbjct: 243 CEAGLMSQATELIENSWRSDVKID 266


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDA 371



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 HLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PDA   +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 76/160 (47%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R    +D   ++  I    ++G++ +++E +R  R  K  + I     +++ L K    +
Sbjct: 65  RGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFK 124

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +    +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +G+IR+ +  +   L   M    V PD    S++++ L K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 131/242 (54%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK   +E + +LY +M+  GI PDVV  +++  G     ++  A  LF EM   G
Sbjct: 327 LIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMG 386

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y   I+ L K+G ++E+  L   + +     DI   + ++DGL K G+ + A 
Sbjct: 387 LDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAE 446

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F ++ +  L  + VTYS ++ G    G+M+ A  +   ME+  V PNVITF ++I+G+
Sbjct: 447 EVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGY 506

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +    SK +++L +M ++NVMP+  + +I++D   K     +    F    +   ++ES
Sbjct: 507 AKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAG-EQDVADDFCKEMKSRRLEES 565

Query: 242 NV 243
           NV
Sbjct: 566 NV 567



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+C++ ++  A  L+ EM   G+ P+ V + T+   LF+  +V  AF L  +M   G
Sbjct: 362 ILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  T T  +DGL K G   E+ E+F T+  L    +   YS L+DG CK G++E+A 
Sbjct: 422 ISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAE 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +  +V+T+S +I+G    G + KA D+  +M +  V PN I +  LI G+
Sbjct: 482 LVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGY 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E     +   +MK + +     I  I+++ L +
Sbjct: 542 FKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKR 578



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 120/236 (50%), Gaps = 19/236 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-------------------KGIKPDVVIHNTLFIGLF 42
           L+  +CK  ++  A +L++E+L                    K ++P +V + TL     
Sbjct: 273 LLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYC 332

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           +   VE +  L+ +M  +G+  D  T +  + G C++G + E+  LFR +  +  + +  
Sbjct: 333 KFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHV 392

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +Y+ +I+ L KSGR+  A  L   +    +  D+VT + ++ GL+  G+  +A ++F  +
Sbjct: 393 SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 452

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +APN +T+  L+ G+ ++ +      +L KM++++V P+    S +++  AK
Sbjct: 453 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAK 508



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 118/246 (47%), Gaps = 12/246 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGY K   +  A+++  EM+ + + P+ +++  L  G F+  + + A     EM+   
Sbjct: 502 IINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRR 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      + I ++ L + G + E+  L   +     + DI  Y+ LIDG  K G    AL
Sbjct: 562 LEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAAL 621

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  DVV Y+ +I GL   G+ D  + +   M E  +AP+ IT+ T+I+ +
Sbjct: 622 SIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSRMIELGLAPDCITYNTIINTY 680

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE-------R 234
               +    +++L++MK   +MP+A   +I++  L K       +P+   H+       R
Sbjct: 681 CIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGF----VPTPITHKFLVKAYSR 736

Query: 235 QEEVDE 240
            E+ D+
Sbjct: 737 SEKADK 742



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 43/253 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K      AL++  EM  K I+ DVV +N L  GL  + + +  + +   M   G
Sbjct: 607 LIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSRMIELG 665

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG------ 115
           +A D  TY   I+  C  G   +++++   ++      +   Y+ LI GLCK+G      
Sbjct: 666 LAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPI 725

Query: 116 ----------RLEIA--------------LELFHS-------LPRGVLVADVVTYSIMIH 144
                     R E A              LEL          + RG+  AD+VTY+ +I 
Sbjct: 726 THKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGI-SADLVTYNALIR 784

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF----IRINEPSKVIELLHKMKEK 200
           G      ++KA   +  M  + +APN+ T+ TL+ G     +      +  +L+ +M E+
Sbjct: 785 GYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNER 844

Query: 201 NVMPDASIVSIVV 213
            ++P+A+   I+V
Sbjct: 845 GLVPNAATYDILV 857



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 19/237 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ GYC+   ++ A  +   ++  G+  DV+  NTL  G  E   + +A +L +   R 
Sbjct: 202 ILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIENSWRS 261

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-------------------RILKCELDI 101
            V  D  TY   +   CK G +  +  LF  +                    I   +  +
Sbjct: 262 DVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTL 321

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
             Y+ LI   CK   +E +  L+  +    ++ DVVT S +++G    G++ +A  LF +
Sbjct: 322 VTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFRE 381

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M E  + PN +++ T+I+   +     +   L  +M  + +  D    + V+D L K
Sbjct: 382 MYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFK 438



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 19/237 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+   ++    L SEM+ +G+  D +  N L  G   I  V+ A  +   +   G
Sbjct: 168 VIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGG 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D       IDG C+   + ++ EL         ++DI  Y+ L+   CK+G L  A 
Sbjct: 228 VTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAE 287

Query: 122 ELFHSLPRGV-------------------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            LF+ +                       L   +VTY+ +I        ++++H L+  M
Sbjct: 288 SLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKM 347

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             N + P+V+T  ++++GF R  + ++   L  +M E  + P+    + +++ L K+
Sbjct: 348 IMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKS 404



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 44/266 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
           +IN YC   + E AL++ +EM S GI P+ V +N L  GL                    
Sbjct: 676 IINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYS 735

Query: 42  --------FEIHQ--------VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                    +IH+        ++R   + DEM + G++AD  TY   I G C   ++ ++
Sbjct: 736 RSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKA 795

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSG----RLEIALELFHSLPRGVLVADVVTYSI 141
           ++ +  + +     +I  Y+ L+ GL  +G     +E   +L   +    LV +  TY I
Sbjct: 796 LKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDI 855

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++ G    G   K   L ++M      P + T+  LI  + +  +  +  ELL+ +  K 
Sbjct: 856 LVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKG 915

Query: 202 VMPDASIVSIVVDLLAKNEISLNSLP 227
            +P+    S   D+L    ++L+  P
Sbjct: 916 RIPN----SFTYDILTCGWLNLSYEP 937



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY K  E + A +   EM S+ ++   VI + L   L  + +++ A  L  +M   
Sbjct: 536 ILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSK 595

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   IDG  K G  + ++ + + ++      D+ AY+ LI GL + G+ +  
Sbjct: 596 GIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPR 655

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 +  G L  D +TY+ +I+     G+ + A D+  +M+   + PN +T+  LI G
Sbjct: 656 YVCSRMIELG-LAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGG 714

Query: 181 FIR 183
             +
Sbjct: 715 LCK 717



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 2/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  Y  +     A   +S M + G+ P +   NTL         V +   ++ +M   G
Sbjct: 65  LIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCG 124

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +  + +  LCK G +  ++   R   ++  ++D   Y+ +I G C+ G ++   
Sbjct: 125 VVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVV--DIDNVTYNTVIWGFCQKGLVDQGF 182

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  L  D +T +I++ G    G +  A  +  ++ +  V  +VI   TLI G+
Sbjct: 183 GLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGY 242

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                 S+  EL+      +V  D
Sbjct: 243 CEAVLMSQATELIENSWRSDVKID 266


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 118/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    +++++F+ L ++  +L+ + ++ +ID L K GR + A 
Sbjct: 612 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV +  TY +M   +   G +++   LFL ME+N    +      ++   
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 731

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  E ++    L  + EK+   +AS  S+ +DLL+  +
Sbjct: 732 LQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGK 770



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  + + A + Y EML +GI PDVV +N++   L +   +++A ++ + M ++G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   + G C +G   E++   + +R    E D+  YS L+D LCK+GR   A 
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + P+   F  LI  +
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + P+A     V+ +L K+
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 125/223 (56%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ +G+ P  +++N+L  GL   ++ ERA +L  EM   G+  +T
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + ++  Y+ LI+G C +G+++ A++L   
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  + VTYS +I+G     +M+ A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL  ++ E     + S  +I++  L KN+++ ++L  F
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC   +++ A+ L S M+S G+KP+ V ++TL  G  +I ++E A  LF EM+  G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     ++++  Y+ ++ GLCK+   + AL
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F +L    L  +  T++IMI  L   G+ D+A DLF+    N + PN  T+  +    
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
           I      ++ +L   M++     D+ +++ +V +LL + EI+
Sbjct: 697 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C+   ++        ++ KG + D +    L  GL    +   A  +    M  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
            G   +  +Y I + GLC      E++EL   +   R      D+ +Y+ +I+G  K G 
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 117 LEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            + A   +H  L RG+L  DVVTY+ +I  L     MDKA ++   M +N V P+ +T+ 
Sbjct: 212 SDKAYSTYHEMLDRGIL-PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +++HG+    +P + I  L KM+   V PD    S+++D L KN
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   + E A  L  EML +GI  + +  N++     +  +V  + KLF+ M R G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I+G C  G + E+++L   +  +  + +   YS LI+G CK  R+E AL
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       +++   +   ++  +A   +I++D L K
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLK 663



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   ++I I    K G + +++ +F  +R      +   Y  +I  LCKSGR+E A
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F  +    L    + Y+ +IHGL    + ++A +L L+M +  +  N I F ++I  
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485

Query: 181 FI---RINEPSKVIELLHKMKEK 200
                R+ E  K+ EL+ ++  K
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVK 508



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 3/155 (1%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYS 105
           E A  +FDE+ R G  A        +  + ++          R  R    E+  D+  Y 
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     D + ++ ++ GL  D +   A D+ L  M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
               PNV ++  L+ G    N   + +ELLH M +
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186



 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 48/100 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKNK  + AL ++  +    +K +    N +   L ++ + + A  LF     +
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G+  +  TY +  + +   G + E  +LF ++    C +D
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 720


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 123/234 (52%), Gaps = 16/234 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           L++ Y K K++  A ++++ M+  G  P+ + ++ L  GL +  ++++A +++ ++    
Sbjct: 364 LLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTS 423

Query: 58  ------------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
                         D +A +  TY   IDGLCK   +V++ EL   +    CE +   Y 
Sbjct: 424 DNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYD 483

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK G+++ A E+F  + +   +  V TY+ +I  ++ D ++D A  +   M E+
Sbjct: 484 ALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVES 543

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  PNV+T+  +I G  RI E  K ++LL  M+EK   P+    + ++D L K+
Sbjct: 544 SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKS 597



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  +   M+ KG  PD   ++ +   L E  +VE+AF LF EM+  GV  D 
Sbjct: 264 CGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDV 323

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++   F  +R + C  ++  Y+ L+    K+ +L  A ++F+ 
Sbjct: 324 YTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNR 383

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + +TYS ++ GL   G++ KA +++  +                  +++APN
Sbjct: 384 MIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPN 443

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G LI G  + ++     ELL  M      P+  I   ++D   K
Sbjct: 444 VVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCK 491



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 115/217 (52%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I+ A  ++  M   G  P V  + +L   +F+  +++ A K+  +M    
Sbjct: 485 LIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESS 544

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGLC+ G   ++++L   +    C  ++  Y+ LIDGL KSG+++++L
Sbjct: 545 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSL 604

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       + VTY ++I+     G +D+AH L  +M++      +  + +++ GF
Sbjct: 605 QLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGF 664

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  + LL +++    +P A +  +++D  +K
Sbjct: 665 SKKFIAS--LGLLEELESHGTVPIAPVYGLLIDNFSK 699



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 103/198 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++  A  L   MLS G +P+ +I++ L  G  ++ +++ A ++F  M + G
Sbjct: 450 LIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  ID + K+  +  ++++   +    C  ++  Y+ +IDGLC+ G  + AL
Sbjct: 510 YLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       +VVTY+ +I GL   G++D +  LF+ M     APN +T+  LI+  
Sbjct: 570 KLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHC 629

Query: 182 IRINEPSKVIELLHKMKE 199
                  +   LL +MK+
Sbjct: 630 CAAGLLDEAHSLLSEMKQ 647



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 36/237 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+  E + AL L S M  KG  P+VV +  L  GL +  +V+ + +LF +M   G
Sbjct: 555 MIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--------------- 106
            A +  TY + I+  C  G + E+  L   ++       +Q Y                 
Sbjct: 615 CAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGL 674

Query: 107 ------------------LIDGLCKSGRLEIALEL---FHSLPRGVLVADVVTYSIMIHG 145
                             LID   K+GRLE ALEL      L   + +     Y+ +I  
Sbjct: 675 LEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQA 734

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           L    Q++KA +L+ ++    V P +  F  LI G I++N+ ++ ++L + + ++ V
Sbjct: 735 LCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 102/261 (39%), Gaps = 47/261 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ K K++     + + M+ +G  P+  + N+L            A+KL   M   G
Sbjct: 148 LLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCG 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG---------LC 112
                  Y IFI  +C  G  + S +L       K   ++ A SC+++          LC
Sbjct: 208 CPPGYVAYNIFIGSIC-GGEELPSPDLLALAE--KVYEEMLASSCVLNKVNTANFARCLC 264

Query: 113 KSGRLEIALE-----------------------------------LFHSLPRGVLVADVV 137
             G+ ++A +                                   LF  +    +  DV 
Sbjct: 265 GMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVY 324

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+I+I      G +++A   F +M     + NV+T+  L+H +++  +  +  ++ ++M
Sbjct: 325 TYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRM 384

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            +    P+    S +VD L K
Sbjct: 385 IDAGCPPNTITYSALVDGLCK 405



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 7/215 (3%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G +P    +N L   L    Q++  F++  EM   G   D  T   F   LCK G   ++
Sbjct: 35  GYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDA 94

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + +         +LD    + +I GL ++   + A+   H +     + +VVTY  ++ G
Sbjct: 95  LVMIEREDF---KLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTG 151

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                Q+     +   M +    PN   F +L+H +    +     +LL +M +    P 
Sbjct: 152 FLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPG 211

Query: 206 ASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
               +I +  +   E     LPS  +    E+V E
Sbjct: 212 YVAYNIFIGSICGGE----ELPSPDLLALAEKVYE 242



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  +    + A++    M      P+VV + TL  G  +  Q+    ++ + M ++G
Sbjct: 113 MISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEG 172

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
              +   +   +   C       + +L + +    C     AY+  I  +C         
Sbjct: 173 CNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPD 232

Query: 117 -LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            L +A +++  +     V + V  +     L   G+ D A  +   M      P+  T+ 
Sbjct: 233 LLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYS 292

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I       +  K   L  +MK   V PD    +I++D   K
Sbjct: 293 KVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCK 335


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 119/216 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR + A 
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    LV DV TYS+M   L   G +++  DLFL MEEN    N     +++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  + ++    L  + EK+   +AS  S+ +DLL+
Sbjct: 735 LQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLS 770



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++ A   Y EML +GI P+VV ++++   L +   +++A ++   M ++G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTY   + G C +G   E++   + +     E D+  Y+ L+D LCK+GR   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + PN   F  LI  +
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + PD      V+ +L K+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L + M+S G+KPD V +NTL  G  +I ++E A  LF EM+  G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF  +  N + P+V T+  +    
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     ++ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 700 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 759

Query: 241 SNV 243
           S  
Sbjct: 760 STA 762



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 119/223 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ + + P  +++N+L   L    + ++A +L  EM   G+  DT
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + DI  YS LIDG C +G+++ A +L  S
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTY+ +I+G     +M+ A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + E     + S  +I++  L KN ++  +L  F
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMF 642



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C    ++        ++ KG + D +    L  GL    +   A  +    M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  +Y I + GLC      E++EL + +      C  D+ +Y+ +I+G  K G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 118 EIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A   +H  L RG+L  +VVTYS +I  L     MDKA ++   M +N V PN  T+ +
Sbjct: 216 DKAYGTYHEMLDRGIL-PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++HG+    +P + I  L KM    V PD    + ++D L KN
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + + A  L  EML +GI  D +  N++     +  +V  + KLFD M R G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG C  G + E+ +L  ++  +  + D   Y+ LI+G CK  R+E AL
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ + + M+  G+ P+   +N++  G     Q + A     +M  DG
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +D LCKNG   E+ ++F ++     + +I  Y  L+ G    G L    
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +   +SI+I      G++D+A  +F  M +  + P+ +T+GT+I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +       +    +M ++ + P
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSP 442



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I I    K G + +++ +F  +R      D   Y  +I  LCKSGR+E A+
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L    + Y+ +IH L    + DKA +L L+M +  +  + I F ++I   
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  K+ +L+ ++    V PD    S ++D
Sbjct: 490 CKEGRVIESEKLFDLMVRI---GVKPDIITYSTLID 522


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDA 371



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 HLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PDA   +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + JA  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  +I  A +++  +   G++P VV  NTL  G   +  ++  F+L + M   
Sbjct: 128 ILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHAS 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 188 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ + +GL   G + +AHDL  +M    + P+ IT+ TLI G
Sbjct: 248 MEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D  + + ++  L +   S+++
Sbjct: 308 CCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDA 352



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 164 LMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ L  GLCK G L+ A 
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAH 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G M+ A +    M +  +  + + +  LI G 
Sbjct: 284 DLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGL 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 344 CQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKK 381



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 102/198 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 198 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY     GLCK G + ++ +L   + +   + D   Y+ LIDG CK G +E A
Sbjct: 258 SLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETA 317

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + PN  T+  +I+ 
Sbjct: 318 FEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINE 377

Query: 181 FIRINEPSKVIELLHKMK 198
           F +  +     +LL +M+
Sbjct: 378 FCKKGDVWTGSKLLKEMQ 395



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK G I  +  +F  +        
Sbjct: 98  LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPS 157

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  + G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 158 VVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 218 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 76/155 (49%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  + +     +++ L K    ++    
Sbjct: 51  SDIYVFSGLITXYLESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGF 110

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G +  A  +F  + +  + P+V++F TL++G+IR
Sbjct: 111 YKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIR 170

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L + M    V PD    S++++ L K
Sbjct: 171 LGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCK 205


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+  +++ AL L   M   G  PD V HN +  GL   ++V R  ++   +QRD
Sbjct: 259 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRD 318

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV   +  T+T  I G CK G + +++ ++  +       +   Y+ LI+G  K G L  
Sbjct: 319 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 378

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+E++  + R     DVVT+S +I G    GQ+D A  ++ DM ++ + PNV TF  +IH
Sbjct: 379 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIH 438

Query: 180 GFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDLLAK 218
              + N   + I LL+++    ++ P A I + V+D+L K
Sbjct: 439 SLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCK 478



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 103/196 (52%), Gaps = 1/196 (0%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
            PDV   N +  G+  + QV++A +L + M   G + DT T+ I +DGLC+   +    E
Sbjct: 251 SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHE 310

Query: 88  LFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + R L R   C  ++  ++ +I G CK+G+LE A+ +++ +    ++ + VTY+++I+G 
Sbjct: 311 VLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGY 370

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +  A +++  M      P+V+TF +LI G+ R  +    + +   M +  + P+ 
Sbjct: 371 GKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNV 430

Query: 207 SIVSIVVDLLAKNEIS 222
              SI++  L K   S
Sbjct: 431 YTFSIIIHSLCKQNRS 446



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 1/150 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
           LI+GYC+  +++ AL ++S+M    I+P+V   + +   L + ++ + A  L +E+  R 
Sbjct: 401 LIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRP 460

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A     Y   ID LCK G + E+  + + +    C  D   Y+ LI G C   R+  A
Sbjct: 461 DIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEA 520

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           +  FH +       D +T +  I  L   G
Sbjct: 521 IMFFHEMVEAGCSPDSITVNCFISCLLKAG 550



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 3/172 (1%)

Query: 50  AFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           A +LFD+M    G + D R  +  +        +  S  L        C ++  AY+ L+
Sbjct: 166 ALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLM 225

Query: 109 DGLCKSGRLEIALELFHSLPRG-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             L   GR+   + LF    +  V   DV +++++I G+   GQ+ KA +L   M E   
Sbjct: 226 SSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGC 285

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
           +P+ +T   ++ G  R NE S+  E+L +++   V MP+    + V+    K
Sbjct: 286 SPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCK 337



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I+I+  CK    + A+ L +E+ L   I P   I+N +   L +  +V+ A  +   M+ 
Sbjct: 435 IIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEE 494

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            G   D  TYTI I G C    I E++  F  +    C  D    +C I  L K+G
Sbjct: 495 KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 550


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 110/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+CK   +   L L SEM+ KG+ P+VV + TL   + +   + RA ++FD+M+  G
Sbjct: 318 LVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRG 377

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + RTYT  IDG C+ G + E+ ++   + +      +  Y+ L+ G C  GR++ A+
Sbjct: 378 LRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAV 437

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  DVV+YS +I G   + ++ KA  +  +M E  V P+ +T+ +LI G 
Sbjct: 438 GILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGL 497

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  +  +L  +M  + + PD
Sbjct: 498 CLQQKLVEAFDLFREMMRRGLPPD 521



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 110/215 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C    +     L  EM  KG+ PD V +NTL  G  +   + +   L  EM   G
Sbjct: 283 VINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKG 342

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TYT  I+ +CK G +  +VE+F  +R+     + + Y+ LIDG C+ G +  A 
Sbjct: 343 LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAY 402

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +        VVTY+ ++HG    G++ +A  +   M E  + P+V+++ T+I GF
Sbjct: 403 KVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGF 462

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            R  E  K  ++  +M EK V+PD    S ++  L
Sbjct: 463 CRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGL 497



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 110/206 (53%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           +++ + A  ++ +M+  G+ P+V  +N +  G+     +E+      +M+++G++ +  T
Sbjct: 185 HRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVT 244

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y   ID  CK   + E++ L R + +     ++ +Y+ +I+GLC  GR+    EL   + 
Sbjct: 245 YNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMR 304

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              LV D VTY+ +++G   +G + +   L  +M    ++PNV+T+ TLI+   +    S
Sbjct: 305 GKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLS 364

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVD 214
           + +E+  +M+ + + P+    + ++D
Sbjct: 365 RAVEIFDQMRVRGLRPNERTYTTLID 390



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 21/230 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC    ++ A+ +   M+ +G+ PDVV ++T+  G     ++ +AF++ +EM   G
Sbjct: 423 LVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKG 482

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT TY+  I GLC    +VE+ +LFR +       D   Y+ LI+  C  G L  AL
Sbjct: 483 VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKAL 542

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI--- 178
            L   + +   + D VTYS++I+GL    +   A  L L +      P+ +T+ TLI   
Sbjct: 543 RLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENC 602

Query: 179 --------HGFIR-------INEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                    G ++       +NE  +V +    M ++N  P+A+I ++++
Sbjct: 603 SNNEFKSVEGLVKGFCMKGLMNEADRVFK---TMLQRNHKPNAAIYNLMI 649



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK K+++ A+ L   M   G+  +++ +N++  GL    ++    +L +EM+  G
Sbjct: 248 LIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKG 307

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   ++G CK G + + + L   +       ++  Y+ LI+ +CK+G L  A+
Sbjct: 308 LVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAV 367

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    L  +  TY+ +I G    G M++A+ +  +M  +  +P+V+T+  L+HG+
Sbjct: 368 EIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGY 427

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +    + + +L  M E+ + PD    S V+
Sbjct: 428 CFLGRVQEAVGILRGMVERGLPPDVVSYSTVI 459



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G     ++E  L    +M  +GI P+VV +NTL     +  +V+ A  L   M   
Sbjct: 212 VIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVG 271

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVAA+  +Y   I+GLC  G + E  EL   +R      D   Y+ L++G CK G L   
Sbjct: 272 GVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQG 331

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +    L  +VVTY+ +I+ +   G + +A ++F  M    + PN  T+ TLI G
Sbjct: 332 LVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDG 391

Query: 181 FIR---INEPSKVIE 192
           F +   +NE  KV+ 
Sbjct: 392 FCQKGLMNEAYKVLS 406



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 15/232 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+ +E+  A  +  EM+ KG+ PD V +++L  GL    ++  AF LF EM R G
Sbjct: 458 VIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG 517

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I+  C +G + +++ L   +       D   YS LI+GL K  R ++A 
Sbjct: 518 LPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAK 577

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYND---------------GQMDKAHDLFLDMEENA 166
            L   L     V D VTY+ +I    N+               G M++A  +F  M +  
Sbjct: 578 RLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRN 637

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             PN   +  +IHG  R     K   L  +++  +       V  +V  LA+
Sbjct: 638 HKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAR 689



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 105/220 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+   +  A  + SEM+  G  P VV +N L  G   + +V+ A  +   M   G
Sbjct: 388 LIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERG 447

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y+  I G C+   + ++ ++   +       D   YS LI GLC   +L  A 
Sbjct: 448 LPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAF 507

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + R  L  D VTY+ +I+    DG++ KA  L  +M +    P+ +T+  LI+G 
Sbjct: 508 DLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGL 567

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +         LL K+  +  +PD    + +++  + NE 
Sbjct: 568 NKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEF 607



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 105/212 (49%), Gaps = 5/212 (2%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI-----HQVERAFKLFDEMQRDGVAADT 66
           +  AL L       G  P V+ +N +   L           + A ++F +M R+GV+ + 
Sbjct: 148 VPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNV 207

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY + I G+   G + + +   R +       ++  Y+ LID  CK  +++ A+ L  +
Sbjct: 208 YTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRA 267

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +  G + A++++Y+ +I+GL   G+M +  +L  +M    + P+ +T+ TL++GF +   
Sbjct: 268 MAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGN 327

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + LL +M  K + P+    + +++ + K
Sbjct: 328 LHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY-----NDGQMDKAHDL 158
           +  ++  L + G +  AL L H   R      V++Y+ ++  L      N    D A  +
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERV 194

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F DM  N V+PNV T+  +I G +   +  K +  + KM+++ + P+    + ++D   K
Sbjct: 195 FRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCK 254

Query: 219 NE 220
            +
Sbjct: 255 KK 256



 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 44/244 (18%), Positives = 83/244 (34%), Gaps = 55/244 (22%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVV----------------------------- 32
           LIN YC + E+  AL L+ EM+ +G  PD V                             
Sbjct: 528 LINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEE 587

Query: 33  ------IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                  +NTL                      +    + ++    + G C  G + E+ 
Sbjct: 588 SVPDDVTYNTLI--------------------ENCSNNEFKSVEGLVKGFCMKGLMNEAD 627

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F+T+     + +   Y+ +I G  + G +  A  L+  L         V    ++  L
Sbjct: 628 RVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKAL 687

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G  D+   L  ++  +    +      L+    +      V+ +L +M +  ++PD 
Sbjct: 688 AREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPDG 747

Query: 207 SIVS 210
            I S
Sbjct: 748 GIHS 751


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 117/213 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+ Y K+   + AL  + +M  +GI P++V  N     L E+ ++  A  +F+ ++ +
Sbjct: 444 LFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSN 503

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D+ TY + +    K G + E++EL   +   +CE DI   + LI+ L K+GR++ A
Sbjct: 504 GLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEA 563

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  L    L   VVTY+ +I GL  +GQ+ +A +LF  M  N   PN ITF T++  
Sbjct: 564 WKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDC 623

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             + +E    +++L+KM   N MPD    + ++
Sbjct: 624 LCKNDEVDLALKMLYKMTTMNCMPDVLTFNTII 656



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 110/222 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K ++ E   +L  EM S G+KP++  +      L    +++ A ++   M+ DG   D  
Sbjct: 241 KRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVV 300

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TYT+ ID LC  G + +++ELF  ++    + D   Y  ++D     G L    E +  +
Sbjct: 301 TYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEM 360

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV+T++I+++ L   G +D+A  L   M +  V PN+ T+ TLI G +R+N  
Sbjct: 361 EADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRL 420

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
              ++L + M+   V+P A    + +D   K+  S  +L +F
Sbjct: 421 DDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETF 462



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  CK   I+ A +L   M  +G+ P++  +NTL  GL  +++++ A  LF+ M+  
Sbjct: 374 ILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETL 433

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY +FID   K+G   +++E F  ++I     +I A +  +  L + GRL  A
Sbjct: 434 GVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREA 493

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F+ L    L  D VTY++M+      GQ+D+A +L  DM EN   P++I   +LI+ 
Sbjct: 494 KVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINT 553

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  ++  ++K+  + P     + ++  L K
Sbjct: 554 LYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGK 591



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 1/213 (0%)

Query: 7   CKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           CK+K+   A +++     + G+KP +  +N L  G   +H  E A+ LF EM+  G A D
Sbjct: 765 CKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPD 824

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TY + +D   K+G I E  EL+  +    C+ +   ++ +I  L KS  L+ AL+LF+
Sbjct: 825 VFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFY 884

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            L  G       TY  ++ GL   G++++A +LF +M +    PN   +  LI+GF +  
Sbjct: 885 DLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTG 944

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +   EL  +M  + + PD    + +V  L +
Sbjct: 945 DVNTACELFKRMVREGIRPDLKSYTSLVGCLCE 977



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 106/209 (50%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L++G  K+  +E A  L+ EM+  G +P+  I+N L  G  +   V  A +LF  M R+G
Sbjct: 901  LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YT  +  LC+ G + +++  F  L+     LD  AY+ +IDGL +S R+E AL
Sbjct: 961  IRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEAL 1020

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             L+  +    +  D+ TY+ +I  L   G +++A  L+ +++   + PNV T+  LI G+
Sbjct: 1021 TLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGY 1080

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVS 210
                       +  +M      P+    +
Sbjct: 1081 SMSGNSDSAYAVYKRMMVGGCSPNTGTFA 1109



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C   +++ A+ L+ +M +   KPD V + T+     +   + R  + + EM+ D
Sbjct: 304 VLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEAD 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D  T+TI ++ LCK G I E+  L   +R      ++  Y+ LI GL +  RL+ A
Sbjct: 364 GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF+++    +V    TY + I      G+ DKA + F  M+   +APN++     ++ 
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYS 483

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +    +   + +++K   + PD+   ++++   +K
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSK 521



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 98/178 (55%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            I+I    K+  ++ AL+L+ +++S    P    +  L  GL +  ++E A +LF+EM   
Sbjct: 865  IIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDY 924

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G   +   Y I I+G  K G +  + ELF+ +       D+++Y+ L+  LC++GR++ A
Sbjct: 925  GCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDA 984

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            L  F  L +  L  D + Y++MI GL    ++++A  L+ +M+   + P++ T+ +LI
Sbjct: 985  LHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLI 1042



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 100/201 (49%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            +SEM + G  PDV+    L   L +   ++ AF L D M++ GV  +  TY   I GL 
Sbjct: 356 FWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLL 415

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           +   + ++++LF  +  L        Y   ID   KSGR + ALE F  +    +  ++V
Sbjct: 416 RVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIV 475

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
             +  ++ L   G++ +A  +F  ++ N +AP+ +T+  ++  + +  +  + IELL  M
Sbjct: 476 ACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDM 535

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            E    PD  +++ +++ L K
Sbjct: 536 SENQCEPDIIVINSLINTLYK 556



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 104/205 (50%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +L++ + K+ +I     LY +M+    KP+ + HN +   L + + +++A  LF ++   
Sbjct: 830  LLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSG 889

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              +    TY   +DGL K+G + E+ ELF  +    C  +   Y+ LI+G  K+G +  A
Sbjct: 890  DFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTA 949

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ELF  + R  +  D+ +Y+ ++  L   G++D A   F  +++  +  + I +  +I G
Sbjct: 950  CELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDG 1009

Query: 181  FIRINEPSKVIELLHKMKEKNVMPD 205
              R +   + + L  +M+ + + PD
Sbjct: 1010 LGRSHRIEEALTLYDEMQSRGINPD 1034



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 105/183 (57%), Gaps = 1/183 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  Y K  +++ A+ L S+M     +PD+++ N+L   L++  +V+ A+K+F  ++  
Sbjct: 514 MMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDM 573

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A    TY   I GL K G +  ++ELF ++    C  +   ++ ++D LCK+  +++A
Sbjct: 574 KLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLA 633

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++ + +     + DV+T++ +IHGL  + ++  A  LF  M++  + P+ +T  TL+ G
Sbjct: 634 LKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKK-MLTPDCVTLCTLLPG 692

Query: 181 FIR 183
            ++
Sbjct: 693 VVK 695



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILING+ K  ++  A  L+  M+ +GI+PD+  + +L   L E  +V+ A   F+++++ 
Sbjct: 935  ILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQT 994

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  D+  Y + IDGL ++  I E++ L+  ++      D+  Y+ LI  L  +G +E A
Sbjct: 995  GLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQA 1054

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             +L+  L    L  +V TY+ +I G    G  D A+ ++  M     +PN  TF  L
Sbjct: 1055 GKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 105/218 (48%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI G+      E A NL++EM + G  PDV  +N L     +  ++   F+L+++M    
Sbjct: 796  LIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSS 855

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +T T+ I I  L K+  + ++++LF  L           Y  L+DGL KSGRLE A 
Sbjct: 856  CKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAK 915

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ELF  +       +   Y+I+I+G    G ++ A +LF  M    + P++ ++ +L+   
Sbjct: 916  ELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCL 975

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                     +    K+K+  +  D+   ++++D L ++
Sbjct: 976  CEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRS 1013



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 40/218 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L +G C+      AL +Y  M+ +G+KP +   + L +   +    E    L +EM+  
Sbjct: 204 LLQSGLCRE-----ALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESL 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYTI I                   R+L                 ++GR++ A
Sbjct: 259 GLKPNIYTYTICI-------------------RVLG----------------RAGRIDEA 283

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       DVVTY+++I  L   G++D A +LF+ M+ ++  P+ +T+ T++  
Sbjct: 284 CRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDK 343

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F    +  +V E   +M+     PD    +I+V+ L K
Sbjct: 344 FSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCK 381



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 38/255 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQRD 60
           +I+G    K +  A+ L+ +M  K + PD V   TL  G+ +   +E AFK+ ++ + R 
Sbjct: 655 IIHGLVIEKRVSDAIWLFHQM-KKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRL 713

Query: 61  GVAADTRTYTIFIDGL---------------------CKNGYI---------------VE 84
           GV  D R +   + G+                     CK+G +               V 
Sbjct: 714 GVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVA 773

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
                R  + L  +  +++Y+ LI+G       E+A  LF  +       DV TY++++ 
Sbjct: 774 QSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLD 833

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                G++++  +L+  M  ++  PN IT   +I   ++ N   K ++L + +   +  P
Sbjct: 834 AHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSP 893

Query: 205 DASIVSIVVDLLAKN 219
                  ++D L K+
Sbjct: 894 TPCTYGPLLDGLLKS 908



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +F+ MQ   +  D  TY I   GL   G + ++   F  +R     L+  +Y+ LI  L 
Sbjct: 146 VFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLL 205

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           +SG    ALE++  +    L   + T+S ++         +    L  +ME   + PN+ 
Sbjct: 206 QSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIY 265

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           T+   I    R     +   ++ +M++    PD    ++++D L 
Sbjct: 266 TYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALC 310


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   CK KE E A      M  +G KPDV  ++T+   L +  +++ A +LFDEM   
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GVA D   Y I IDG  K      ++EL+ R L       +++ ++ +I GL K GR++ 
Sbjct: 214 GVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDD 273

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L+++  + +     D+ TYS +IHGL + G +DKA  +F +++E   + +V+T+ T++ 
Sbjct: 274 CLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLG 333

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           GF R  +  + +EL   M+ KN +   S   ++  LL   +I
Sbjct: 334 GFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKI 375



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK K +E A NL  EM   G++ +  + N L  GL    ++  A     EM ++G
Sbjct: 435 IIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y I I GLCK G   E+    + +     + D++ YS L+ GLC+  ++++AL
Sbjct: 495 CRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLAL 554

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+H   +  L  DV+ ++I+IHGL + G++D A  +  +ME      N++T+ TL+ GF
Sbjct: 555 ELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGF 614

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ + ++   +   M +  + PD
Sbjct: 615 FKVGDSNRATVIWGYMYKMGLQPD 638



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI+G+ K K+ + A+ L+  +L    + P+V  HN +  GL +  +V+   K+++ M++
Sbjct: 224 ILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQ 283

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +    D  TY+  I GLC  G + ++  +F  L   K  +D+  Y+ ++ G C+ G+++ 
Sbjct: 284 NEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKE 343

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           +LEL+  +     V ++V+Y+I+I GL  +G++D+A  ++  M     A +  T+G  IH
Sbjct: 344 SLELWRIMEHKNSV-NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIH 402

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G       +K + ++ +++      D    + ++D L K +
Sbjct: 403 GLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKK 443



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+C+  +I+ +L L+  M  K    ++V +N L  GL E  +++ A  ++  M   G
Sbjct: 331 MLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            AAD  TY IFI GLC NGY+ +++ + + +      LD+ AY+ +ID LCK  RLE A 
Sbjct: 390 YAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEAS 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  +    + +I GL  D ++ +A     +M +N   P V+++  LI G 
Sbjct: 450 NLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGL 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +  +    + +M E    PD    SI++  L ++ 
Sbjct: 510 CKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDR 548



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  ++  +  A     EM   G +P VV +N L  GL +  +   A     EM  +G
Sbjct: 470 LIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D +TY+I + GLC++  I  ++EL+        E D+  ++ LI GLC  G+L+ A+
Sbjct: 530 WKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAM 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++      A++VTY+ ++ G +  G  ++A  ++  M +  + P++I++ T++ G 
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                 S  +E     +   + P     +I+V
Sbjct: 650 CMCRGVSYAMEFFDDARNHGIFPTVYTWNILV 681



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G  K   ++  L ++  M     + D+  +++L  GL +   V++A  +F+E+   
Sbjct: 260 IMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDER 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + D  TY   + G C+ G I ES+EL+R +   K  ++I +Y+ LI GL ++G+++ A
Sbjct: 320 KASIDVVTYNTMLGGFCRCGKIKESLELWRIME-HKNSVNIVSYNILIKGLLENGKIDEA 378

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  +P     AD  TY I IHGL  +G ++KA  +  ++E +    +V  + ++I  
Sbjct: 379 TMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDC 438

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +     +   L+ +M +  V  ++ + + ++  L ++
Sbjct: 439 LCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRD 477



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 87/182 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK  +   A     EML  G KPD+  ++ L  GL    +++ A +L+ +  + 
Sbjct: 504 ILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQS 563

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   + I I GLC  G + +++ +   +    C  ++  Y+ L++G  K G    A
Sbjct: 564 GLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRA 623

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  + +  L  D+++Y+ ++ GL     +  A + F D   + + P V T+  L+  
Sbjct: 624 TVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRA 683

Query: 181 FI 182
            +
Sbjct: 684 VV 685



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 77/148 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C++++I+ AL L+ + L  G++ DV++HN L  GL  + +++ A  +   M+  
Sbjct: 539 ILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHR 598

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              A+  TY   ++G  K G    +  ++  +  +  + DI +Y+ ++ GLC    +  A
Sbjct: 599 NCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYA 658

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +E F       +   V T++I++  + N
Sbjct: 659 MEFFDDARNHGIFPTVYTWNILVRAVVN 686



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 87/196 (44%), Gaps = 1/196 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G     V+++ +   L E   V    ++ + ++      D       I    KN    ++
Sbjct: 38  GYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQA 97

Query: 86  VELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           +++F+ +R I  CE  I++Y+ L++   ++ +      LF       +  ++ TY+++I 
Sbjct: 98  LDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIK 157

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                 + +KA      M +    P+V ++ T+I+   +  +    +EL  +M E+ V P
Sbjct: 158 MSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAP 217

Query: 205 DASIVSIVVDLLAKNE 220
           D +  +I++D   K +
Sbjct: 218 DVTCYNILIDGFLKEK 233


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 43/254 (16%)

Query: 2   LINGY-CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LINGY  + K IE A +L+ EM  +G KPDVV +N L  G F       A  L + M+  
Sbjct: 441 LINGYFLQGKPIE-AQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQ 499

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG---------- 110
           GV  ++ T+ I I+GLC  G + E+ E F  L+    E+ ++ Y+ L++G          
Sbjct: 500 GVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKS 559

Query: 111 -------------------------------LCKSGRLEIALELFHSLPRGVLVADVVTY 139
                                          LC +G +E A  LF+         D VTY
Sbjct: 560 HELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTY 619

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +IMI+G      + +AH+LF DM+E  + P+ +T+  +I+G+ ++N   +  EL   MKE
Sbjct: 620 TIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKE 679

Query: 200 KNVMPDASIVSIVV 213
           + + PD    ++++
Sbjct: 680 RGIKPDVIAYTVII 693



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC ++  + AL +Y  M+S+GIK + VI + +   L E+ +      +F+E +  G
Sbjct: 336 LVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D + Y I  D LCK G + ++V +   L+ ++ ++D++ Y+ LI+G    G+   A 
Sbjct: 396 LFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQ 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       DVV Y+++  G + +    +A DL   ME   V PN  T   +I G 
Sbjct: 456 SLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +  E  + +K ++V     I + +V+
Sbjct: 516 CSAGKVEEAEEFFNWLKGESVEISVEIYTALVN 548



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 113/216 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C   +++ A +++ EM  +G+ PDV ++  L  G       ++A  ++  M   G
Sbjct: 301 VIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRG 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++  +  L + G  +E V++F   +     +D +AY+ L D LCK G+++ A+
Sbjct: 361 IKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAV 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   L    L  D+  Y+ +I+G +  G+  +A  LF +MEE    P+V+ +  L  GF
Sbjct: 421 GMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGF 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            R     + ++LL+ M+ + V P+++   I+++ L 
Sbjct: 481 FRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLC 516



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            LIN   K+ E++ AL L+    S G+  +   +  +   L +    E   ++FDEM+  
Sbjct: 195 FLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEMKEA 254

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+  Y  FI+GLCKN        + +  R     +   AY+ +I G C   +L+ A
Sbjct: 255 GVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYTAVIRGFCNETKLDEA 314

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  + +  LV DV  Y  ++HG  N    DKA  ++  M    +  N + F  ++H 
Sbjct: 315 ESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHC 374

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +    +V+++  + KE  +  D    +I+ D L K
Sbjct: 375 LDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCK 412



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 2   LINGYC------KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           L+NGYC      K+ E++ A  L   ML   +KP  V+++ +F  L     +E A  LF+
Sbjct: 546 LVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFN 605

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                G   D  TYTI I+G CK   + E+ ELF+ ++      D   Y+ +I+G CK  
Sbjct: 606 LFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMN 665

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
            L  A ELF  +    +  DV+ Y+++I GL N G  + A  L+ +M +  + P
Sbjct: 666 CLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTP 719



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 41/249 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L  G+ +N+    A++L + M S+G++P+   H  +  GL    +VE A + F+ ++ +
Sbjct: 475 VLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGE 534

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ------------------ 102
            V      YT  ++G C+   I +S EL     +L+  L++                   
Sbjct: 535 SVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCN 594

Query: 103 -----------------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
                                   Y+ +I+G CK+  L  A ELF  +    +  D VTY
Sbjct: 595 GNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTY 654

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +IMI+G      + +AH+LF DM+E  + P+VI +  +I G +         +L ++M +
Sbjct: 655 TIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMID 714

Query: 200 KNVMPDASI 208
             + P A++
Sbjct: 715 MGMTPGATL 723



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 89/190 (46%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I P+++  N L   L +  +V+ A  LF   +  G+  +  TYTI I  LCK G     V
Sbjct: 186 ILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWENVV 245

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  ++    + D   Y+  I+GLCK+ R ++   +               Y+ +I G 
Sbjct: 246 RVFDEMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYTAVIRGF 305

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N+ ++D+A  +FL+ME+  + P+V  +  L+HG+       K + +   M  + +  + 
Sbjct: 306 CNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTNC 365

Query: 207 SIVSIVVDLL 216
            I S ++  L
Sbjct: 366 VIFSCILHCL 375


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK K ++ A+NL+ EM  + I P+VV +N+L  GL ++ ++    KL DEM   G
Sbjct: 356 MINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRG 415

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   +D LCKN ++ +++ L   L+      D+  Y+ LI GLC+SG+LE A 
Sbjct: 416 QPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQ 475

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  L       DV TY++MI G    G  D A  L   ME+N   PN  T+  +I   
Sbjct: 476 KVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSL 535

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
              +E     +LL +M  + ++ + S +
Sbjct: 536 FEKDENDMAEKLLREMIARGLLDEKSYI 563



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC  KEI  A +++  M S+G+  +V  + T+  GL +I  V+ A  LF+EM+   
Sbjct: 321 LMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRK 380

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDGL K G I   ++L   +       +I  Y+ ++D LCK+  ++ A+
Sbjct: 381 IIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAI 440

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  +L    +  D+ TY+++I GL   G+++ A  +F D+       +V T+  +I GF
Sbjct: 441 ALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGF 500

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNE 220
                    + LL KM++   +P+A    IV+  L  K+E
Sbjct: 501 CVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDE 540



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   I  AL L   +  K ++P+ V++N +   + +   V  AF L+ +M    
Sbjct: 181 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 240

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  T    I G C  G + E+V L   + +      +  +S L+D  CK G+++ A 
Sbjct: 241 ISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAK 300

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +     +  ++ DVVTY+ ++ G     +++KA D+F  M    V  NV ++ T+I+G 
Sbjct: 301 MMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGL 360

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I    + + L  +M+ + ++P+    + ++D L K
Sbjct: 361 CKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGK 397



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++   K K    AL+L+ +M   GI  D    N L     ++     +F +F ++ + G
Sbjct: 76  ILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKG 135

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   I GLC  G+I +++     +      LD  +Y  LI+GLCK GR+  AL
Sbjct: 136 FDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAAL 195

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +   ++  + V Y+++I  +     ++ A DL+  M    ++P+  T  +LI+GF
Sbjct: 196 QLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGF 255

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +  + + LLHKM  +N+ P     SI+VD   K
Sbjct: 256 CIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCK 292



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK K +  A +LYS+M++K I PD    N+L  G   + Q++ A  L  +M  +
Sbjct: 215 MIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILE 274

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESV---------------------------------- 86
            +     T++I +D  CK G + E+                                   
Sbjct: 275 NINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKA 334

Query: 87  -ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ++F ++       ++Q+Y+ +I+GLCK   ++ A+ LF  +    ++ +VVTY+ +I G
Sbjct: 335 KDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDG 394

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++     L  +M +    PN+IT+ +++    + +   K I LL  +K++ + PD
Sbjct: 395 LGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPD 454

Query: 206 ASIVSIVVDLLAKN 219
               ++++  L ++
Sbjct: 455 MYTYTVLIKGLCQS 468



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 102/214 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN + +      + +++ ++L KG  P+ +  NTL  GL     + +A    D++   
Sbjct: 110 ILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQ 169

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G I  +++L + +     + +   Y+ +ID +CK+  +  A
Sbjct: 170 GFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDA 229

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  D  T + +I+G    GQ+ +A  L   M    + P + TF  L+  
Sbjct: 230 FDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDA 289

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  +   +L    +K+++ D    + ++D
Sbjct: 290 FCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMD 323



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 39/199 (19%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84
           K   P ++  N +   L +      A  L  +M+ +G+ +D  T+ I I+   + G    
Sbjct: 64  KNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSL 123

Query: 85  SVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
           S  +F   +ILK   D  A  ++ LI GLC  G +  AL  FH               ++
Sbjct: 124 SFSVFG--KILKKGFDPNAITFNTLIKGLCLKGHIHQALN-FHD-------------KVV 167

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
             G + D                      +++GTLI+G  ++   +  ++LL ++  K V
Sbjct: 168 AQGFHLDQ---------------------VSYGTLINGLCKVGRITAALQLLKRVDGKLV 206

Query: 203 MPDASIVSIVVDLLAKNEI 221
            P+A + ++++D + K ++
Sbjct: 207 QPNAVMYNMIIDNMCKAKL 225



 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 37/73 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C++ ++E A  ++ ++L KG   DV  +  +  G       + A  L  +M+ +
Sbjct: 460 VLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDN 519

Query: 61  GVAADTRTYTIFI 73
           G   + +TY I I
Sbjct: 520 GCIPNAKTYEIVI 532


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 119/216 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR + A 
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    LV DV TYS+M   L   G +++  DLFL MEEN    N     +++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  + ++    L  + EK+   +AS  S+ +DLL+
Sbjct: 735 LQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLS 770



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++ A   Y EML +GI P+VV +N++   L +   +++A ++   M ++G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTY   + G C +G   E++   + +     E D+  Y+ L+D LCK+GR   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + PN   F  LI  +
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + PD      V+ +L K+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L + M+S G+KPD V +NTL  G  +I ++E A  LF EM+  G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF  +  N + P+V T+  +    
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           I      ++ +L   M+E     ++ ++ SIV  LL + +I+      F + E+   ++ 
Sbjct: 700 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 759

Query: 241 SNV 243
           S  
Sbjct: 760 STA 762



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 119/223 (53%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ + + P  +++N+L   L    + ++A +L  EM   G+  DT
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + +I  YS LIDG C +G+++ A +L  S
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTY+ +I+G     +M+ A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + E     + S  +I++  L KN ++  +L  F
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMF 642



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C    ++        ++ KG + D +    L  GL    +   A  +    M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  +Y I + GLC      E++EL + +      C  D+ +Y+ +I+G  K G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 118 EIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A   +H  L RG+L  +VVTY+ +I  L     MDKA ++   M +N V PN  T+ +
Sbjct: 216 DKAYGTYHEMLDRGIL-PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++HG+    +P + I  L KM    V PD    + ++D L KN
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + + A  L  EML +GI  D +  N++     +  +V  + KLFD M R G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  IDG C  G + E+ +L  ++  +  + D   Y+ LI+G CK  R+E AL
Sbjct: 510 VKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 666



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ + + M+  G+ P+   +N++  G     Q + A     +M  DG
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +D LCKNG   E+ ++F ++     + +I  Y  L+ G    G L    
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +   +SI+I      G++D+A  +F  M +  + P+ +T+GT+I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +       +    +M ++ + P
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSP 442



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 105/215 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +CK   +  +  L+  M+  G+KP+++ ++TL  G     +++ A KL   M   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+G CK   + +++ LFR +       DI  Y+ ++ GL ++ R   A 
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +       ++ TY+I++HGL  +   D+A  +F ++    +     TF  +I   
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +++    +  +L   +    ++PD    S++ + L
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I I    K G + +++ +F  +R      D   Y  +I  LCKSGR+E A+
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN---------------- 165
             F  +    L    + Y+ +IH L    + DKA +L L+M +                 
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 166 -------------------AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                               V PN+IT+ TLI G+    +  +  +LL  M    + PD 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 207 SIVSIVVDLLAK 218
              + +++   K
Sbjct: 550 VTYNTLINGYCK 561


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 128 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 188 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 248 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 308 CCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDA 352



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM    
Sbjct: 234 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKE 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 294 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 354 KMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 164 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 284 HLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGL 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD+   +++++   K 
Sbjct: 344 CQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKK 381



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 198 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++  L   + + + + D   Y+ LIDG CK G L+ A
Sbjct: 258 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSA 317

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 318 FEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINE 377

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 378 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 411



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 158 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 218 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 114 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 173

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 174 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 233

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 234 LIDGHCKN 241



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 51  SDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 110

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 205


>gi|224082750|ref|XP_002306825.1| predicted protein [Populus trichocarpa]
 gi|222856274|gb|EEE93821.1| predicted protein [Populus trichocarpa]
          Length = 205

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 15/188 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +C  K     L ++     +G +P+ V  +++  GL    ++  A  LF +M   G
Sbjct: 16  LINCFCDVKRASDGLLVFG----RGFRPNAVTFSSMIKGLCVDDKIGEAVGLFKKMGLFG 71

Query: 62  VAADT----------RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
              D            TY +++DGLCKN    E+V LF +L   K E  I+  +CLI+ L
Sbjct: 72  CWPDVLRLHDLVPNVTTYNVYLDGLCKNNCFSEAVSLFHSLENCKFESSIEILNCLINCL 131

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           CK G+L  A +LF+ +P   L   VVTY+IMIHGL  +GQM++A DL +++E+ +  PNV
Sbjct: 132 CKIGKLATAWDLFYRMPNKGLKPAVVTYAIMIHGLCTEGQMERAKDLLVELEDKSCTPNV 191

Query: 172 ITFGTLIH 179
           +    LIH
Sbjct: 192 VR-SPLIH 198



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + ++G CKN     A++L+  + +   +  + I N L   L +I ++  A+ LF  M   
Sbjct: 91  VYLDGLCKNNCFSEAVSLFHSLENCKFESSIEILNCLINCLCKIGKLATAWDLFYRMPNK 150

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI 101
           G+     TY I I GLC  G +  + +L   L    C  ++
Sbjct: 151 GLKPAVVTYAIMIHGLCTEGQMERAKDLLVELEDKSCTPNV 191


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 117/220 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+K +  A +LYSEM+S+ I  ++V ++ L  G   + +++ A  LF++M  + 
Sbjct: 216 IIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSEN 275

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +D  CK G + E+      +     + DI  Y+ L+DG C    + +A 
Sbjct: 276 INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAK 335

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +++    + A V +Y+I+I+G      +D+A  LF +M    + PNVIT+ +LI G 
Sbjct: 336 SILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGL 395

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +    S  +EL+  M ++   PD    S ++D L KN +
Sbjct: 396 CKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHL 435



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 111/203 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+CK K ++ A+ L+ EM  K I P+V+ +N+L  GL +  ++  A +L D M   
Sbjct: 355 IVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDR 414

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+  +D LCKN  + +++ L   L+      ++  Y+ LIDGLCK GRLE A
Sbjct: 415 GQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 474

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  L        V TY++MI G  + G  D+A  L   M++N+  P+ IT+  +I  
Sbjct: 475 RNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICS 534

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
               +E  K  +LL +M  + ++
Sbjct: 535 LFDKDENDKAEKLLREMITRGLL 557



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 36/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK   ++ A N  + M+ +GIKPD+V +N+L  G   +++V  A  + + M   
Sbjct: 285 ILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHR 344

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A  R+Y I I+G CK   + ++++LF+ +   +   ++  Y+ LIDGLCKSGR+  A
Sbjct: 345 GVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYA 404

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   +       D++TYS ++  L  +  +DKA  L + +++  + PN+ T+  LI G
Sbjct: 405 LELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDG 464

Query: 181 FI---RINEPSKVIE--------------------------------LLHKMKEKNVMPD 205
                R+ +   + E                                LL KMK+ + +PD
Sbjct: 465 LCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPD 524

Query: 206 ASIVSIVV-DLLAKNE 220
           A    I++  L  K+E
Sbjct: 525 AITYEIIICSLFDKDE 540



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 107/211 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+K     L+L+ +M  +GIKP+ V  N L     ++  +  AF +  ++ + G   DT 
Sbjct: 82  KSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTI 141

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T   FI G C  G I +++     L  L   LD  +Y  LI+GLCK G    ALEL   +
Sbjct: 142 TLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRV 201

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
              ++  DVV YS +I  +  D  ++ A DL+ +M    ++ N++T+  LI GF  + + 
Sbjct: 202 DGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKL 261

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              I L +KM  +N+ PD    +I+VD   K
Sbjct: 262 KDAIGLFNKMTSENINPDVYTFNILVDAFCK 292



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 95/181 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+  I  AL L   M  +G +PD++ ++++   L + H V++A  L  +++  G
Sbjct: 391 LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQG 450

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYTI IDGLCK G + ++  +F  L +    L +  Y+ +I G C  G  + AL
Sbjct: 451 IRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEAL 510

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + D +TY I+I  L++  + DKA  L  +M    +  + + +G+    F
Sbjct: 511 SLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSF 570

Query: 182 I 182
           +
Sbjct: 571 M 571



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 120/235 (51%), Gaps = 1/235 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G+C   +I  ALN + ++++ G   D V + TL  GL ++ +   A +L   +    
Sbjct: 146 FIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKL 205

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y+  ID +CK+  + ++ +L+  +   +   +I  YS LI G C  G+L+ A+
Sbjct: 206 VQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI 265

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  DV T++I++     +G++ +A +    M +  + P+++T+ +L+ G+
Sbjct: 266 GLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGY 325

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHERQ 235
             +NE +    +L+ M  + V       +IV++   K ++   ++  F  +H +Q
Sbjct: 326 CLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQ 380



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+   I  A ++ +++L  G +PD +  NT   G     Q+ +A    D++   
Sbjct: 110 ILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVAL 169

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+GLCK G    ++EL R +     +LD+  YS +ID +CK   +  A
Sbjct: 170 GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    + +++VTYS +I G    G++  A  LF  M    + P+V TF  L+  
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDA 289

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +     +    L  M ++ + PD    + ++D
Sbjct: 290 FCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMD 323


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 2/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK  ++E A  L +EM  +G  PDVV H+++   L     + RA + F E     
Sbjct: 111 LIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE-- 168

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D+  + I + GLCK   + E+ ++   +       D+  Y+ LIDGLCKS R+E A 
Sbjct: 169 CAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEAR 228

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  ++ +  +  ++VTY+ +I+G    G    AH L   M ++   P+V+TF +LI GF
Sbjct: 229 QLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGF 288

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            + ++  K  E+LH MK+    P+    ++++  L 
Sbjct: 289 CQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLC 324



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 122/217 (56%), Gaps = 1/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++  A  +  EM  +GI PDVV +N+L  GL + +++E A +L + M + 
Sbjct: 178 ILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKR 237

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY   I G CK G    + +L   +       D+  ++ LI G C+  +++ A
Sbjct: 238 KVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKA 297

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ H + +G+   ++VTY+++I GL + G+ ++A +L  +M+   + P++IT+ +LI  
Sbjct: 298 CEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGI 357

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLL 216
           F R  +  +  ++ + M E+ V+PD  S  ++ V LL
Sbjct: 358 FCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALL 394



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 107/202 (52%), Gaps = 3/202 (1%)

Query: 21  EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
           E+L +    + + +NTL  G  +   +ERAF+L  EM+  G + D  T++  +  LC  G
Sbjct: 95  ELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTG 154

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
            +  +++ FR    ++C  D   ++ L+ GLCK+ +L  A ++   +    +V DVVTY+
Sbjct: 155 NLSRAMQYFR--ESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYN 212

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I GL    +M++A  L   M +  V PN++T+ TLI+G+ +        +L+ +M + 
Sbjct: 213 SLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQS 272

Query: 201 NVMPD-ASIVSIVVDLLAKNEI 221
              PD  +  S++     K++I
Sbjct: 273 GTHPDVVTFNSLISGFCQKSKI 294



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+  +E A  L   M+ + ++P++V +NTL  G  +      A +L + M + G
Sbjct: 214 LIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSG 273

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I G C+   I ++ E+   ++   C  ++  Y+ LI GLC +GR   A 
Sbjct: 274 THPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEAC 333

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL   +  RG+L  D++TY+ +I     + Q+++A  +   M E  V P+ I++ TL   
Sbjct: 334 ELLSEMDGRGIL-PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVA 392

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
            ++     +   LL  M +   +P+
Sbjct: 393 LLKSERFDEAFALLDNMFDAGAIPN 417



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 2/184 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-EIHQVERAFKLFDEMQR 59
           +LI+G C       A  L SEM  +GI PD++ +N+L IG+F    Q+E+AF++ + M  
Sbjct: 318 VLISGLCDAGRANEACELLSEMDGRGILPDIITYNSL-IGIFCRNFQIEQAFQIQNLMVE 376

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  D  +Y      L K+    E+  L   +       ++  ++ L++GLC S RL+ 
Sbjct: 377 RGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDE 436

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L   + R        TY +++ GL   G++D A ++ + M    + P V + GT++H
Sbjct: 437 ARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVH 496

Query: 180 GFIR 183
              R
Sbjct: 497 TLAR 500



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +C+N +IE A  + + M+ +G+ PD + + TL + L +  + + AF L D M   G
Sbjct: 354 LIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAG 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   ++GLC +  + E+  L   +R + C+     Y  L+ GLCK+GR++ A 
Sbjct: 414 AIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAK 473

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA---HDLFLDMEENAVAPN 170
           E+   +    +   V +   ++H L  +G+ D A    D  +  E  A  P+
Sbjct: 474 EVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPS 525


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 4/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++E A++++  M SKG  P+V  +  L  G  +  +VERA  L+  M   G
Sbjct: 220 LIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAG 279

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL--IDGLCKSGRLEI 119
           +A +  TYT  I G C  G++  +  L  ++    C L    ++CL  ID LCK GR+E 
Sbjct: 280 LAPNVVTYTTLIQGQCSEGHLEHAFRLLHSME--ACGLAPNEWTCLVLIDALCKHGRIEE 337

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +   SL +  +  + V Y+ MI  L   G+ D AH+L   +      P+   + +LI 
Sbjct: 338 AQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLID 397

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  R N+  + I LL+ M E  V  +A   +I++D
Sbjct: 398 GLCRENKLLEAISLLNDMIESGVQANAVPFTILID 432



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 107/212 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK+ ++E A+ LYS M+  G+ P+VV + TL  G      +E AF+L   M+  G
Sbjct: 255 LICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACG 314

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  T  + ID LCK+G I E+ +   +L     +++   Y+ +ID LCKSG+ + A 
Sbjct: 315 LAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAH 374

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V D   YS +I GL  + ++ +A  L  DM E+ V  N + F  LI   
Sbjct: 375 NLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKH 434

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +R         +  +M    V PD    ++ +
Sbjct: 435 LREFRSDSPKMISDRMAAAGVKPDVVTYTVFI 466



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN YC   ++  A    S +L  G+ PD   + +  +G         A +LF  M + G
Sbjct: 80  LINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRG 139

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
            A    TY   + GLC  G + E++ +F  +    C  D   YS ++ GLC +GR     
Sbjct: 140 CARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAV 199

Query: 117 ------------------------------LEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                         LE+A+++F  +     + +V TY+ +I G 
Sbjct: 200 ALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGF 259

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++++A  L+  M E  +APNV+T+ TLI G            LLH M+   + P+ 
Sbjct: 260 CKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNE 319

Query: 207 SIVSIVVDLLAKN 219
               +++D L K+
Sbjct: 320 WTCLVLIDALCKH 332



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C    +  A+ +++ M   G  PD  +++ +  GL    +   A  L  +    G
Sbjct: 150 LLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKG 209

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   IDG C  G +  ++++F+ ++   C  +++ Y+ LI G CKSG++E A+
Sbjct: 210 FVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAM 269

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    L  +VVTY+ +I G  ++G ++ A  L   ME   +APN  T   LI   
Sbjct: 270 VLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDAL 329

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     +  + L  + +K +  +  I + ++D L K+
Sbjct: 330 CKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKS 367



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 106/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK+  IE A      ++ KGIK + VI+ ++   L +  + + A  L  ++  +
Sbjct: 324 VLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITE 383

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  IDGLC+   ++E++ L   +     + +   ++ LID   +  R +  
Sbjct: 384 GFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSP 443

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  DVVTY++ I     DG+M+ A  + + M ++ V PN+ T+ TLI G
Sbjct: 444 KMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKG 503

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  +   S+    L  M +    P+    ++++ LL K 
Sbjct: 504 YANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKK 542



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           + TL         +  A +    + R G+A D+  YT F+ G C+ G    +  LF  + 
Sbjct: 77  YTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMP 136

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
              C      Y+ L+ GLC +G +  A+ +F  +       D   YSIM+HGL   G+  
Sbjct: 137 QRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAG 196

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +A  L  D       PNV  +  LI G+    +    I++   M+ K  +P+
Sbjct: 197 EAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPN 248



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 89/185 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+ + +GA NL  +++++G  PD  ++++L  GL   +++  A  L ++M   G
Sbjct: 360 MIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESG 419

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+   +TI ID   +         +   +     + D+  Y+  I   C+ GR+E A 
Sbjct: 420 VQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAE 479

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  ++ TY+ +I G  N G + +A     +M +N   PN  ++  L+   
Sbjct: 480 SMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLL 539

Query: 182 IRINE 186
           ++ N 
Sbjct: 540 LKKNS 544



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 103/261 (39%), Gaps = 51/261 (19%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I  YC++  +E A ++  +M+  G++P++  +NTL  G   +  V +AF     M  +
Sbjct: 464 VFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDN 523

Query: 61  GVAADTRTYTIFIDGLCK-NGY---IVESVELFRTLRI------------LKCELDIQAY 104
           G   +  +YT+ +  L K N Y   + +S+ L++ + +            L+C      Y
Sbjct: 524 GCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVY 583

Query: 105 SCLIDGLCKSGRLE-----------------------------------IALELFHSLPR 129
            C I  L K  RLE                                    AL    S+ +
Sbjct: 584 DCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVK 643

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
              +  + +Y  +I  L  +G    A  +F D+       + I +  LI G ++    + 
Sbjct: 644 RNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTAD 703

Query: 190 VIELLHKMKEKNVMPDASIVS 210
              LL  M+E+N  P ++I S
Sbjct: 704 CSRLLSFMEEQNCRPGSAIYS 724



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TYT  I+  C  G +  +     +L       D  AY+  + G C++G    A  LF  +
Sbjct: 76  TYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLM 135

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
           P+        TY+ ++ GL   G + +A  +F  M  +  AP+   +  ++HG       
Sbjct: 136 PQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRA 195

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVD 214
            + + LL     K  +P+ ++ + ++D
Sbjct: 196 GEAVALLTDAMGKGFVPNVAVYNALID 222


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C     +  + +Y +ML KG+KPDV+ +NTL  GL ++  +  A KL  EM + G
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ IDG CK G +  ++E+ + +     ELD  A++ LI G C+ G++  A 
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  D  TY+++IHG    G +     L  +M+ +   P V+T+  L++G 
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  +      LL  M    V+PD    +I+++
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EM  +G+ P+ V   TL  G     + +   +++ +M R 
Sbjct: 300 VLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRK 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   I+GLCK G + E+ +L   +     + D   Y+ LIDG CK G LE A
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESA 419

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   + +  +  D V ++ +I G   +GQ+ +A     +M E  + P+  T+  +IHG
Sbjct: 420 LEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHG 479

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +     +LL +M+    +P     +++++ L K 
Sbjct: 480 FCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 109/204 (53%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A   Y E+L  G  PDV   N L   L + H++  A  LF E+ + G+     ++   I+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK+G + +   L R +   +   D+  YS LI+GLCK G+L+ A +LF  +    LV 
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + VT++ +I+G    G+ D   +++  M    V P+VIT+ TLI+G  ++ +  +  +L+
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLV 388

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            +M ++ + PD    ++++D   K
Sbjct: 389 IEMTQRGLKPDKFTYTMLIDGCCK 412



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK+  ++    L   M+   + PDV  ++ L  GL +  Q++ A KLF EM   G
Sbjct: 266 LINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  I+G C  G     +E+++ +     + D+  Y+ LI+GLCK G L  A 
Sbjct: 326 LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  L  D  TY+++I G   +G ++ A ++  +M +  +  + + F  LI GF
Sbjct: 386 KLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGF 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  +    L +M E  + PD +  ++V+    K
Sbjct: 446 CREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N Y  +     A+  +  +    ++        LF  L +++    A+  ++E+   
Sbjct: 160 VLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDC 219

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   + + +  LCK   I E+  LF  +        + +++ LI+G CKSG L+  
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  DV TYS++I+GL  +GQ+D A+ LFL+M +  + PN +TF TLI+G
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     +E+  +M  K V PD    + +++ L K
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+CK  +++    L  EM   G  P VV +N L  GL +  Q++ A  L D M   
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           GV  D  TY I ++G CK+G
Sbjct: 535 GVVPDDITYNILLEGHCKHG 554


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 107/203 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +C++     A  L  +M+ + I PDVV  + L   L +  +V  A +++ +M R G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T TY   IDG CK   + ++  +  ++    C  D+  +S LI+G CK+ R++  +
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM 236

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R  +VA+ VTY+ +IHG    G +D A DL   M  + VAPN ITF +++   
Sbjct: 237 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
               E  K   +L  +++  V P
Sbjct: 297 CSKKELRKAFAILEDLQKSEVCP 319



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 5/234 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C    +  AL L   M+ +G +P    + T+  GL ++   E A  L  +M+   
Sbjct: 16  LMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETH 71

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A    Y   ID LCK+G+ + +  LF  +       D+  YS +ID  C+SGR   A 
Sbjct: 72  IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAE 131

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  DVVT+S +I+ L  +G++ +A +++ DM    + P  IT+ ++I GF
Sbjct: 132 QLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGF 191

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
            + +  +    +L  M  K+  PD    S +++   K +   N +  F  +H R
Sbjct: 192 CKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR 245



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 114/256 (44%), Gaps = 36/256 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  + E ALNL S+M    IK  VVI+N +   L +      A  LF EM   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI------------- 108
           +  D  TY+  ID  C++G   ++ +L R +   +   D+  +S LI             
Sbjct: 107 IFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAE 166

Query: 109 ----------------------DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                 DG CK  RL  A  +  S+       DVVT+S +I+G 
Sbjct: 167 EIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGY 226

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD- 205
               ++D   ++F +M    +  N +T+ TLIHGF ++ +     +LL+ M    V P+ 
Sbjct: 227 CKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNY 286

Query: 206 ASIVSIVVDLLAKNEI 221
            +  S++  L +K E+
Sbjct: 287 ITFQSMLASLCSKKEL 302



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 85/171 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN   K  ++  A  +Y +ML +GI P  + +N++  G  +  ++  A ++ D M    
Sbjct: 152 LINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKS 211

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  T++  I+G CK   +   +E+F  +       +   Y+ LI G C+ G L+ A 
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           +L + +    +  + +T+  M+  L +  ++ KA  +  D++++ V P ++
Sbjct: 272 DLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCPRIV 322


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 18/251 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI+ Y K K++  A +++  M+  G +P+ V +  L  GL +   + +AF+++ ++    
Sbjct: 364 LIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTS 423

Query: 58  ------------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
                        R  +A +  TY   +DGLCK   +  + EL   +    CE +   Y 
Sbjct: 424 DSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYD 483

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK+G+++ A E+F  + +   +  V TY+ +I  ++ DG++D A  +   M ++
Sbjct: 484 ALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD 543

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEISLN 224
           +  PNV+T+  +I G  RI E  K ++LL  M+EK   P+    + ++D L K  +I L 
Sbjct: 544 SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDL- 602

Query: 225 SLPSFTVHERQ 235
           SL  FT   R+
Sbjct: 603 SLDLFTQMSRK 613



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  L  EM+ KG  PD   ++ +   L    +VE+AF LF EM+  GV  D 
Sbjct: 264 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 323

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++  LF  +R + C   +  Y+ LI    K+ ++  A ++FH 
Sbjct: 324 YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 383

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + VTY  ++ GL   G + KA +++  +                + + +APN
Sbjct: 384 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPN 443

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L+ G  + ++     ELL  M      P+  +   ++D   K
Sbjct: 444 VVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCK 491



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I+ A  ++ +M   G  P V  + +L   +F+  +++ A K+  +M +D 
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGLC+ G   ++++L   +    C  ++  Y+ LIDGL K+G+++++L
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + R     + VTY ++I+ L   G +DKA  L  +M++      +  +   I GF
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 664

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  + +L +M+    +P A +  +++D  +K
Sbjct: 665 SKSFIAS--LGILEEMESYGTVPIAPVYGMLIDCFSK 699



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ A  L   MLS G +P+ ++++ L  G  +  +++ A ++F +M + G
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  ID + K+G +  ++++   +    C  ++  Y+ +IDGLC+ G  E AL
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       +VVTY+ +I GL   G++D + DLF  M     +PN +T+  LI+  
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629

Query: 182 IRINEPSKVIELLHKMKE 199
                  K   LL +MK+
Sbjct: 630 CAAGLLDKARLLLGEMKQ 647



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG--------------------- 40
           L++ YC  K+   A  L + M + G  P  V++N +FIG                     
Sbjct: 183 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN-IFIGSICGQEKLPSPDLLDLAEKIY 241

Query: 41  ---------------------LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
                                L  + + ++AF+L  EM R G   DT TY+  I  LC  
Sbjct: 242 GEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHA 301

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
             + ++  LF+ ++++    D+  Y+ LID  CK+G +E A  LF  +        VVTY
Sbjct: 302 TKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTY 361

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           + +IH      Q+ +A+D+F  M +    PN +T+G L+ G  +    SK  E+  K+
Sbjct: 362 TALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 41/258 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K K++     + + M+++G  P+  + N+L            A+KL + M   G
Sbjct: 148 LLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG 207

Query: 62  VAADTRTYTIFIDGLCKN-----------------------------------------G 80
                  Y IFI  +C                                           G
Sbjct: 208 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 267

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
              ++ +L + +       D   YS +I  LC + ++E A  LF  +    +  DV TY+
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           I+I      G +++A  LF +M     +P V+T+  LIH +++  +  +  ++ H+M + 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 201 NVMPDASIVSIVVDLLAK 218
              P+      +VD L K
Sbjct: 388 GCRPNDVTYGALVDGLCK 405



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 7/203 (3%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G +P  V +N L   L    QV+  F++  EM   G   D  T   F   LCK G   ++
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           +++         +LD    + +I GL ++   + A+   H +     + +VVTY  ++ G
Sbjct: 95  LDMIEREDF---KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSG 151

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                Q+     +   M      PN   F +L+H +    + +   +LL++M      P 
Sbjct: 152 FLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 211

Query: 206 ASIVSIVVDLLAKNEISLNSLPS 228
             + +I +  +   E     LPS
Sbjct: 212 YVVYNIFIGSICGQE----KLPS 230



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  +    + A++    M      P+VV + TL  G  +  Q+    ++ + M  +G
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 172

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
              +   +   +   C       + +L   +    C      Y+  I  +C   +     
Sbjct: 173 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 232

Query: 117 -LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            L++A +++  +     V + V  +     L   G+ DKA  L  +M      P+  T+ 
Sbjct: 233 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 292

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I       +  K   L  +MK   V PD    +I++D   K
Sbjct: 293 KVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 335



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           +LI+ + K   +E A+ L+ EM+     +K D  ++ +L   L    QVE AF+L+ EM 
Sbjct: 692 MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751

Query: 59  RDGVAADTRTYTIFIDGL 76
           R G   +   +   I GL
Sbjct: 752 RRGFVPELSVFVCLIKGL 769



 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C   ++E A  LYSEM  +G  P++ +   L  GL E+ + + A +L   +  +G
Sbjct: 730 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 789

Query: 62  V 62
           V
Sbjct: 790 V 790



 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR--D 60
           I G+  +K    +L +  EM S G  P   ++  L     +  ++E A +L  EM     
Sbjct: 661 IQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPS 718

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D   Y   I  LC    + E+  L+  +       ++  + CLI GL +  + + A
Sbjct: 719 SVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 778

Query: 121 LELFHSL 127
           L+L + +
Sbjct: 779 LQLCYGI 785


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C     +  + +Y +ML KG+KPDV+ +NTL  GL ++  +  A KL  EM + G
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ IDG CK G +  ++E+ + +     ELD  A++ LI G C+ G++  A 
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  D  TY+++IHG    G +     L  +M+ +   P V+T+  L++G 
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  +      LL  M    V+PD    +I+++
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EM  +G+ P+ V   TL  G     + +   +++ +M R 
Sbjct: 300 VLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRK 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   I+GLCK G + E+ +L   +     + D   Y+ LIDG CK G LE A
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESA 419

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   + +  +  D V ++ +I G   +GQ+ +A     +M E  + P+  T+  +IHG
Sbjct: 420 LEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHG 479

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +     +LL +M+    +P     +++++ L K 
Sbjct: 480 FCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 109/204 (53%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A   Y E+L  G  PDV   N L   L + H++  A  LF E+ + G+     ++   I+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK+G + +   L R +   +   D+  YS LI+GLCK G+L+ A +LF  +    LV 
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + VT++ +I+G    G+ D   +++  M    V P+VIT+ TLI+G  ++ +  +  +L+
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLV 388

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            +M ++ + PD    ++++D   K
Sbjct: 389 IEMTQRGLKPDKFTYTMLIDGCCK 412



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK+  ++    L   M+   + PDV  ++ L  GL +  Q++ A KLF EM   G
Sbjct: 266 LINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  I+G C  G     +E+++ +     + D+  Y+ LI+GLCK G L  A 
Sbjct: 326 LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  L  D  TY+++I G   +G ++ A ++  +M +  +  + + F  LI GF
Sbjct: 386 KLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGF 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  +    L +M E  + PD +  ++V+    K
Sbjct: 446 CREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N Y  +     A+  +  +    ++        LF  L +++    A+  ++E+   
Sbjct: 160 VLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDC 219

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   + + +  LCK   I E+  LF  +        + +++ LI+G CKSG L+  
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  DV TYS++I+GL  +GQ+D A+ LFL+M +  + PN +TF TLI+G
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     +E+  +M  K V PD    + +++ L K
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+CK  +++    L  EM   G  P VV +N L  GL +  Q++ A  L D M   
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 61  GVAADTRTYTIFID 74
           GV  D  TY I ++
Sbjct: 535 GVVPDDITYNILLE 548


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK   +  A  LY E+L   + P+VV+  TL  G  +  ++  A  LF  M + G
Sbjct: 275 MIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFG 334

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   I G CK+G ++E+V L   +  L    D+  Y+ LI+GLC   ++  A 
Sbjct: 335 VDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEAN 394

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +     TY+ +IHG   +  M++A DL  +M  + V PN+ITF TLI G+
Sbjct: 395 RLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGY 454

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             + +    + L  +M  K ++PD    + ++D
Sbjct: 455 CNVRDIKAAMGLYFEMTIKGIVPDVVTYTALID 487



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 113/217 (52%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +E AL+L SEM + G++P+++  +TL  G   +  ++ A  L+ EM   G
Sbjct: 415 LIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKG 474

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID   K   + E++ L+  +       +   ++CL+DG  K GRL +A+
Sbjct: 475 IVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAI 534

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + +    +     + V ++ +I GL  +G + +A   F DM    + P++ ++ +++ G 
Sbjct: 535 DFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGH 594

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++    +  + L   M +  ++P+     +V  LLA+
Sbjct: 595 LQEKRITDTMMLQCDMIKTGILPNL----LVNQLLAR 627



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG  + +  +     Y  M+S+G+ PDV I+  LF   F+     +  KL DEM   G
Sbjct: 170 ILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YTI+I  LC++  + E+ ++F  ++      ++  YS +IDG CK+G +  A 
Sbjct: 230 IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAY 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    L+ +VV +  ++ G     ++  A  LF+ M +  V PN+  +  LIHG 
Sbjct: 290 GLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGH 349

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +     + + LL +M+  N+ PD    +I+++ L 
Sbjct: 350 CKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLC 385



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 104/190 (54%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L  EM S GIKP+V I+    + L   +++E A K+F+ M++ GV  +  TY+  IDG C
Sbjct: 221 LLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYC 280

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + ++  L++ + + +   ++  +  L+DG CK+  L  A  LF  + +  +  ++ 
Sbjct: 281 KTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y+ +IHG    G M +A  L  +ME   ++P+V T+  LI+G    ++ ++   L  KM
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKM 400

Query: 198 KEKNVMPDAS 207
           K + + P ++
Sbjct: 401 KNERIFPSSA 410



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK +E+  A +L+  M+  G+ P++ ++N L  G  +   +  A  L  EM+   
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLN 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TYTI I+GLC    + E+  LF+ ++  +       Y+ LI G CK   +E AL
Sbjct: 370 LSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQAL 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  +++T+S +I G  N   +  A  L+ +M    + P+V+T+  LI   
Sbjct: 430 DLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAH 489

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + L   M E  + P+    + +VD   K
Sbjct: 490 FKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWK 526



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK+  +  A+ L SEM S  + PDV  +  L  GL    QV  A +LF +M+ + 
Sbjct: 345 LIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNER 404

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   + TY   I G CK   + ++++L   +     E +I  +S LIDG C    ++ A+
Sbjct: 405 IFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAM 464

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    +V DVVTY+ +I   + +  M +A  L+ DM E  + PN  TF  L+ GF
Sbjct: 465 GLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGF 524

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    S  I+   +  ++    +    + +++ L +N
Sbjct: 525 WKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQN 562



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 1/223 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C   ++  A  L+ +M ++ I P    +N+L  G  + + +E+A  L  EM   
Sbjct: 379 ILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTAS 438

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T++  IDG C    I  ++ L+  + I     D+  Y+ LID   K   ++ A
Sbjct: 439 GVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEA 498

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L+  +    +  +  T++ ++ G + +G++  A D + +  +     N + F  LI G
Sbjct: 499 LRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEG 558

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEIS 222
             +     +       M+   + PD  S VS++   L +  I+
Sbjct: 559 LCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRIT 601



 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D+  Y  L     K G      +L   +    +  +V  Y+I I  L  D +M++A  +F
Sbjct: 198 DVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMF 257

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             M+++ V PN+ T+  +I G+ +     +   L  ++    ++P+  +   +VD   K
Sbjct: 258 ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCK 316


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G  + ++I  A  L+  M S+G KPDVV +NT+  GL +  +++ A  L + M+++
Sbjct: 173 VLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQE 232

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI--DGLCKSGRLE 118
            V+    TYT  ID LCK   + ++ E+F  +    C     AYS LI  +GLCK+ R  
Sbjct: 233 DVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPG 292

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A E+F  +    +   VVTY+ ++ GL +  ++  A +L   M +   APN+ T+  LI
Sbjct: 293 EAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILI 352

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               + ++  +  +LL  M++K  +P   I  +++  LA+
Sbjct: 353 SSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLAR 392



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++  +CK   +  A+++++EM +KG +PD+V  N L  GL+   ++  A +LF  M   G
Sbjct: 139 IVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRG 198

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I GLCK   + E+V L   ++          Y+ LID LCK  RL+ A 
Sbjct: 199 CKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAY 258

Query: 122 ELFHSLPRGVLVADVVTYS--IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           E+F  +  G        YS  I+I+GL    +  +A ++F +M    ++P V+T+ TL+ 
Sbjct: 259 EVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLE 318

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G +   +    +EL + M ++   P+     I++  L K +
Sbjct: 319 GLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTD 359



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G+ K+   +   +    ML  G+ P+ +++N L   L +   +  A      M + 
Sbjct: 34  LLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQH 93

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A +  +Y I IDG CK   I +++   R +  L       AYS ++   CK+G +  A
Sbjct: 94  -CAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKA 152

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F  +P      D+V +++++ GL+   ++ +A +LF  M      P+V+T+ T+I G
Sbjct: 153 MDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAG 212

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  + + LL +MK+++V P     + ++D L K
Sbjct: 213 LCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCK 250



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK +    A  ++ EM  +GI P VV +NTL  GL    +++ A +L   M   
Sbjct: 280 ILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQ 339

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A +  TY I I  LCK   + E+ +L   +R       ++ +  L+  L ++GRL+ A
Sbjct: 340 VPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDA 399

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  + R      V + +I++ G+   G +D+A D    M +  + P+  T+  L+ G
Sbjct: 400 FELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVG 459

Query: 181 FI---RINEPSKVIELL 194
                + ++  K++E L
Sbjct: 460 LCWQGKADQARKLVEEL 476



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 1/198 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  A + Y + + +   P+VV +N +  G  +   +E+A     EM+  G
Sbjct: 70  LISCLCKAGMLAEAES-YLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELG 128

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y+  +   CK G + +++++F  +    CE DI  ++ L+ GL ++ ++  A 
Sbjct: 129 HPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEAR 188

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF S+       DVVTY+ MI GL    ++D+A  L   M++  V+P  +T+ TLI   
Sbjct: 189 ELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHL 248

Query: 182 IRINEPSKVIELLHKMKE 199
            +     +  E+  KM E
Sbjct: 249 CKFARLQQAYEVFEKMAE 266



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 60/129 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK  ++E A  L S M  KG  P + I   L   L    +++ AF+L+ EM R 
Sbjct: 350 ILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRI 409

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  +  I +DG+ + G + E+ +  + +       D   Y  L+ GLC  G+ + A
Sbjct: 410 NCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQA 469

Query: 121 LELFHSLPR 129
            +L   L R
Sbjct: 470 RKLVEELVR 478



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G  +   ++ A +   +M   GI PD   ++ L +GL    + ++A KL +E+ RD
Sbjct: 420 ILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRD 479

Query: 61  G 61
           G
Sbjct: 480 G 480


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 133 ILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 192

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   I  + ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 193 GVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 252

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L AD++TY+ +I+GL   G + +A +L  +M    + P+ IT+ TLI G
Sbjct: 253 MEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDG 312

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D  + + ++  L +   S+++
Sbjct: 313 CCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDA 357



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 107/204 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +I+GA  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 203 VLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++AD  TY   I GLCK G + ++  L   +R+   + D   Y+ LIDG CK G LE A
Sbjct: 263 SLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETA 322

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 323 FEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINE 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 383 FCKKGDVWTGSKLLKEMQRDGHVP 406



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 169 LMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKG 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 229 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQ 288

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + + TLI G 
Sbjct: 289 NLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGL 348

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 349 CQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 386



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ +  D++ +NTL  GL +   +++A  L DEM+  G
Sbjct: 239 LIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKG 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD   Y+ LI GLC+ GR   A 
Sbjct: 299 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAE 358

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 359 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 9/204 (4%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK G I  +  +F  +        
Sbjct: 103 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPS 162

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  + G L+    L  ++    +  DV TYS++I+GL  + ++D A++LF 
Sbjct: 163 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFD 222

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +M +  + PN +TF TLI G  +       +E+  +M  +         S+  DL+  N 
Sbjct: 223 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ---------SLSADLITYNT 273

Query: 221 ISLNSLPSFTVHERQEEVDESNVK 244
           +         + + Q  +DE  +K
Sbjct: 274 LIYGLCKKGDLKQAQNLIDEMRMK 297



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 75/155 (48%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 56  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGF 115

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G++  A  +F  + +  + P+V++F TL++G+IR
Sbjct: 116 YKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIR 175

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 176 LGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCK 210


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK K    A +++ +M   G+ P V ++N+L  G F     + A  L+ EM R G
Sbjct: 289 LIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLG 348

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T +I + GLC  G I  +      +R     L+  AY+ LID  C++G LE AL
Sbjct: 349 LCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEAL 408

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  +VV+YS +I G    G+M  A  ++ +M    + PNV+T+  LIHG 
Sbjct: 409 ATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGH 468

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +            +M E  + P+A  VS++VD L +
Sbjct: 469 AKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCR 505



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K +    A  L+ EML +G+ P VV +NTL         V +A +++D+M    
Sbjct: 149 VLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQ 208

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I  LC+ G I ++  LF  ++      +   Y+ L+ G C+   +  A 
Sbjct: 209 IDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAF 268

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  L    L+ + V ++ +I G     +  +A D+F DM    VAP V  + +L+ G 
Sbjct: 269 VLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGA 328

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R  +  + + L  +M    + PD    SIVV
Sbjct: 329 FRSGDAQEALSLYQEMTRLGLCPDEFTCSIVV 360



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 3/220 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+   I  A  L+  M   G++P+   +N L  G  +   V  AF L+ E+   G+  + 
Sbjct: 224 CEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNA 283

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +T  IDG CK     E+ ++FR +        +  Y+ L+DG  +SG  + AL L+  
Sbjct: 284 VVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQE 343

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + R  L  D  T SI++ GL + GQ+  A      + E+ V  N   +  LI  + R   
Sbjct: 344 MTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGN 403

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVD---LLAKNEISL 223
             + +    +M E  V P+    S ++D    L K +I++
Sbjct: 404 LEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAM 443



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 17/196 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YC+N  +E AL   + M   G++P+VV +++L  G  ++ +++ A  ++ EM   G
Sbjct: 394 LIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKG 453

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I G  KNG I  +    + +       +    S L+DGLC+  R++ A+
Sbjct: 454 IEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAV 513

Query: 122 EL-----------FHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
                         HS           L+ +   Y  +I+GLY DGQ  +A  LF  M +
Sbjct: 514 RFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRK 573

Query: 165 NAVAPNVITFGTLIHG 180
           + +  +  T+  LI G
Sbjct: 574 SGMISDSFTYTLLIRG 589



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 89/186 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +   N +  GL +  +   A++LFDEM R G+     TY   I+     G + ++ E+
Sbjct: 141 PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEM 200

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +  +   + + ++  Y+ +I  LC+ G +  A  LF ++    +  +  TY++++ G   
Sbjct: 201 WDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQ 260

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
              ++ A  L+ ++  + + PN + F TLI GF +    S+  ++   M    V P   +
Sbjct: 261 GDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPV 320

Query: 209 VSIVVD 214
            + ++D
Sbjct: 321 YNSLMD 326



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           A+      + +  L + G + E++ +FR L  L     + A + ++DGL K+ R   A E
Sbjct: 108 ASPAPALGVLVIALSQMGLLDEALYVFRRLWTLPA---LPACNAVLDGLVKARRSRCAWE 164

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF  + R  +V  VVTY+ +I+     G + KA +++  M    + PNVIT+ ++I    
Sbjct: 165 LFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLC 224

Query: 183 RINEPSKVIELLHKMKEKNVMPD 205
                     L   MKE  + P+
Sbjct: 225 EEGCIGDAERLFDAMKEAGMRPN 247



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 17/106 (16%)

Query: 1   ILINGYCKNKEIEGALNL--------YSEMLS---------KGIKPDVVIHNTLFIGLFE 43
           +L++G C+   ++ A+          YS++ S         + + P+  I+ TL  GL+ 
Sbjct: 498 VLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYL 557

Query: 44  IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
             Q   A KLF  M++ G+ +D+ TYT+ I G C  GY++ ++ L+
Sbjct: 558 DGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQCMLGYVLNAMMLY 603



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 19/192 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ KN  I+ A   + EM+  GI P+ +  + L  GL   ++V+ A +    M+  G
Sbjct: 464 LIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFV--MEHSG 521

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   +  ++ F +   +   ++ +  ++ TL I    LD Q Y               A 
Sbjct: 522 IKY-SDIHSFFSNFTTEEEPLIPNSAIYMTL-IYGLYLDGQHYE--------------AG 565

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP-NVITFGTLIHG 180
           +LF  + +  +++D  TY+++I G    G +  A  L+ DM +  V P         I  
Sbjct: 566 KLFSYMRKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKPMRYKIICPEIWS 625

Query: 181 FIRINEPSKVIE 192
           +  +N+P  V+ 
Sbjct: 626 WEPLNDPQTVVS 637


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 3/230 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+N  I+  L L+ EMLSKG+KP  + +  +  GLF   +   A K+  EM   G
Sbjct: 584 LLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T  I + GLC+N    E++ LF+ L  +  + +I   + +ID + K  + E A 
Sbjct: 644 TTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAN 703

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF S+    LV +  TY +MI  L  +G +++A ++F  ME++  AP+      +I   
Sbjct: 704 ELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVL 763

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLNSLPS 228
           +   E SK    L K+  K +  +AS  S+++ L +   K    + SLP+
Sbjct: 764 LEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGKYREQIKSLPA 813



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 103/203 (50%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I+  CK + ++ A  +  +M+S G +PD V +N +  G   + Q +    +F EM R G+
Sbjct: 269 IDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGL 328

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  T   ++  LCK+G   E+ E F ++     + D+  YS L+ G    G +   L 
Sbjct: 329 MPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLN 388

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF+S+    +VAD   Y+I+I      G MD+A  +F  M+E  V P+  T+GT+I  F 
Sbjct: 389 LFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFS 448

Query: 183 RINEPSKVIELLHKMKEKNVMPD 205
           R+   +  ++  ++M    + PD
Sbjct: 449 RMGRLADAMDKFNQMIAMGLKPD 471



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G+C +  +  A  L SEM+S+GI +P+ V  N++   L +  +V  A  +FD +   
Sbjct: 478 LIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHI 537

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   IDG    G + ++  +   +  +  E D+  YS L+DG C++GR++  
Sbjct: 538 GERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDG 597

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    +TY I++HGL+NDG+   A  +  +M E+    ++ T G ++ G
Sbjct: 598 LILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   + I L  K+   NV  + +I++ ++D + K
Sbjct: 658 LCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYK 695



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  + +   +  A++ +++M++ G+KPD +++N+L  G      + +A +L  EM   G
Sbjct: 443 VIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRG 502

Query: 62  VA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +   +T  +   I+ LCK G +VE+ ++F  +  +    D+  ++ LIDG    G++E A
Sbjct: 503 IPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKA 562

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +  ++    +  DVVTYS ++ G   +G++D    LF +M    V P  IT+G ++HG
Sbjct: 563 FGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHG 622

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                      ++ H+M E     D S   I++  L +N
Sbjct: 623 LFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRN 661



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 3/236 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++   C++   + AL+L   M+ K  G  P+VV +NT+  G F   +V +A  LF EM +
Sbjct: 196 VLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQ 255

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  D  TY+ +ID LCK   + ++  + R +     E D   Y+C+I G    G+ + 
Sbjct: 256 QGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKE 315

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
              +F  + R  L+ D+ T +  +  L   G+  +A + F  M      P+++T+  L+H
Sbjct: 316 TAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLH 375

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
           G+        ++ L + M+   ++ D S+ +I++D   K  +   ++  FT + ER
Sbjct: 376 GYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQER 431



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ +  E+  A NL+ EM+ +G+ PDVV +++    L +   +++A  +  +M  +G
Sbjct: 233 VIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNG 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I G    G   E+  +FR +       DI   +  +  LCK G+ + A 
Sbjct: 293 FEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAA 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F S+       D+VTYS+++HG   +G +    +LF  ME N +  +   +  LI  +
Sbjct: 353 EFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAY 412

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + +  +M+E+ VMPDA     V+   ++
Sbjct: 413 GKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSR 449



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 3/208 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++  C+         L+   L  G+K DV++ N L   L    + + A   L   M  
Sbjct: 124 ILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPE 183

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRL 117
            GV  DT +Y+  +  LC++     +++L  T+  +   C  ++ +Y+ +I G  + G +
Sbjct: 184 LGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEV 243

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A  LFH + +  +V DVVTYS  I  L     MDKA  +   M  N   P+ +T+  +
Sbjct: 244 SKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCM 303

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPD 205
           IHG+  + +  +   +  +M  + +MPD
Sbjct: 304 IHGYSILGQWKETAGMFREMTRRGLMPD 331



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GY     +   LNL++ M   GI  D  ++N L     +   ++ A  +F +MQ  
Sbjct: 372 VLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQER 431

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   I    + G + ++++ F  +  +  + D   Y+ LI G C  G L  A
Sbjct: 432 GVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKA 491

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL    + RG+   + V ++ +I+ L  +G++ +A D+F  +      P+VITF +LI 
Sbjct: 492 KELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLID 551

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G+  + +  K   +L  M    + PD    S ++D   +N
Sbjct: 552 GYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRN 591



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY    + +    ++ EM  +G+ PD+   N+    L +  + + A + FD M   G
Sbjct: 303 MIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKG 362

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY++ + G    GY+V+ + LF ++       D   Y+ LID   K G ++ A+
Sbjct: 363 HKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAM 422

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    ++ D  TY  +I      G++  A D F  M    + P+ I + +LI GF
Sbjct: 423 LIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGF 482

Query: 182 IRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
                  K  EL+ +M  + +  P+    + +++ L K
Sbjct: 483 CMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCK 520



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 3/216 (1%)

Query: 1   ILINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-- 57
           IL+   C  K  + A+N L   M   G++PD + ++T+   L E  + +RA  L   M  
Sbjct: 159 ILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVK 218

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  G + +  +Y   I G  + G + ++  LF  +       D+  YS  ID LCK+  +
Sbjct: 219 KSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAM 278

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  +   +       D VTY+ MIHG    GQ  +   +F +M    + P++ T  + 
Sbjct: 279 DKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSY 338

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +    +  +  +  E    M  K   PD    S+++
Sbjct: 339 MSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLL 374



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 56/226 (24%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELFRTLRILKC 97
             E    LFDE+ R       R    F+  L        C++G  + +V LF   RI + 
Sbjct: 52  STEDTHHLFDELLRQTTPVPERALNGFLTALARAPSSATCRDGPSL-AVALFN--RICRE 108

Query: 98  EL-------DIQAYSCLIDGLCKSGRLEIALELF-------------------------- 124
           E         +  Y+ L+D  C++ R  +   LF                          
Sbjct: 109 EARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAK 168

Query: 125 ----------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVI 172
                     H +P   +  D ++YS ++  L  D +  +A DL   M  +    +PNV+
Sbjct: 169 RSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVV 228

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++ T+IHGF R  E SK   L H+M ++ V+PD    S  +D L K
Sbjct: 229 SYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCK 274



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C+N   + A+ L+ ++ +  +K ++ I NT+   ++++ + E A +LFD +   
Sbjct: 653 IILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISAT 712

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + I  L K G + E+  +F  +    C    +  + +I  L + G +  A
Sbjct: 713 GLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKA 772

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
                 +    +  +  T S+M+      G+
Sbjct: 773 GNYLSKVDGKTISLEASTASLMLSLFSRKGK 803


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+  ++ A+ LY ++     KP+  I+N L  G  +  +   A +++ +M  + 
Sbjct: 446 MISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAEND 505

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  T TY   I GLCK    +E+    R +    C LD+  Y  LI GLC+  +++ AL
Sbjct: 506 CSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGAL 565

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHG 180
            L++ +    L  DVV ++I+IHGL + G++D+A  L  +M E+N   PNV+T+ TL+ G
Sbjct: 566 ALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDG 625

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F       K   L   + E  ++PD
Sbjct: 626 FYETGCFDKAASLWMAILENGLVPD 650



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           +I+G C++ +++ A  +YSEM+  G+ PDVVI+N+L  G     +V  A+K +D M    
Sbjct: 306 MIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG 365

Query: 58  -------------------------------QRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                          + D ++ D  T++  I GLC+ G+  +S+
Sbjct: 366 IRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSL 425

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++    R    ELD  +YS +I GLCK GRL+ A++L+  +       +   Y+ +I+G 
Sbjct: 426 QILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGF 485

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               +   A  ++  M EN  +P  IT+ TLIHG  +  +  +      +M EK  M D 
Sbjct: 486 CQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDV 545

Query: 207 SIVSIVVDLLAKNE 220
           +    ++  L +++
Sbjct: 546 NTYGSLIRGLCRDK 559



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+  +   A+ +YS+M      P  + +NTL  GL +  +   A +   EM   G
Sbjct: 481 LINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKG 540

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I GLC++  I  ++ L+  +     + D+  ++ LI GLC +G+++ A 
Sbjct: 541 CMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEAS 600

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L   +  +     +VVTY+ ++ G Y  G  DKA  L++ + EN + P++I++ T I G
Sbjct: 601 QLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKG 660

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               N   + ++LL++M    ++P A   +I+V  + K
Sbjct: 661 LCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIK 698



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 130/254 (51%), Gaps = 36/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L++G+ KN  ++ AL L  EM S  ++PD V +N L  G F   + E+A ++++++ RD 
Sbjct: 200 LMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDP 259

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY + +DGLCK G   E+ +++  +     + D+  Y  +I GLC+S  ++ A
Sbjct: 260 GASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSA 319

Query: 121 LELFHSLPRGVLVADVV----------------------------------TYSIMIHGL 146
             ++  + +  LV DVV                                  +Y+IM+ GL
Sbjct: 320 ARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGL 379

Query: 147 YNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           ++ G +DKA DL+  +E +++++P+++TF T+IHG       +K +++L + +      D
Sbjct: 380 FDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELD 439

Query: 206 ASIVSIVVDLLAKN 219
               S ++  L K+
Sbjct: 440 EFSYSSMISGLCKD 453



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++   C   +++ A+ L+  +  +G+ PD + ++TL  G  + ++++ A  L DEM   
Sbjct: 164 IMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSY 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
            V  D   Y   + G  +NG   +++ ++  L R      ++  Y+ ++DGLCK G  + 
Sbjct: 224 EVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKE 283

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +++  +       D++TY  MIHGL     +D A  ++ +M +  + P+V+ + +L+ 
Sbjct: 284 AGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLK 343

Query: 180 GFI---RINEPSKVIELLHKMKEKNV 202
           GF    R+ E  K  + +     +NV
Sbjct: 344 GFCHAGRVGEAWKFWDSMSVSGIRNV 369



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 116/256 (45%), Gaps = 37/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK    + A +++  M++   +PD++ + T+  GL     V+ A +++ EM + 
Sbjct: 270 VMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKT 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   + G C  G + E+ + + ++ +     ++ +Y+ ++ GL   G ++ A
Sbjct: 330 GLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKA 388

Query: 121 LELFHSLPR-GVLVADVVTYSIMIH----------------------------------- 144
            +L+  L +   L  D+VT+S MIH                                   
Sbjct: 389 TDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMIS 448

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL  DG++D A  L+  +  ++  PN   +  LI+GF + ++ S  I +  +M E +  P
Sbjct: 449 GLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSP 508

Query: 205 DASIVSIVVDLLAKNE 220
                + ++  L K E
Sbjct: 509 TTITYNTLIHGLCKAE 524



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 6/211 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++++ + +    + AL  +  + S  G  P V  HN L        +   A   F  +  
Sbjct: 89  VVLSAFSRALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSH 148

Query: 60  DG----VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                 +A + +TY I +  LC  G +  +V LF +LR      D   YS L+ G  K+ 
Sbjct: 149 GAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNN 208

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITF 174
           RL+ AL L   +P   +  D V Y+ ++ G + +G+ +KA  ++  +  +   +PN+ T+
Sbjct: 209 RLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATY 268

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             ++ G  ++    +  ++  +M   N  PD
Sbjct: 269 NVMLDGLCKLGMFKEAGDVWERMVANNHQPD 299



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)

Query: 85  SVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV----LVADVVTY 139
           ++  FR L   L C   +++++ L+D   ++ R   A   F SL  G     +  ++ TY
Sbjct: 103 ALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTY 162

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +IM+  L   G +D+A  LF  +    +AP+ IT+ TL+ GF++ N     + LL +M  
Sbjct: 163 NIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPS 222

Query: 200 KNVMPDA 206
             V PDA
Sbjct: 223 YEVQPDA 229



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI+G C   +++ A  L SEM  K    P+VV +NTL  G +E    ++A  L+  +  
Sbjct: 585 ILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILE 644

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +G+  D  +Y   I GLC      E V+L 
Sbjct: 645 NGLVPDIISYNTRIKGLCSCNRTPEGVQLL 674



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ +    + A +L+  +L  G+ PD++ +NT   GL   ++     +L +EM   G
Sbjct: 622 LMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASG 681

Query: 62  VAADTRTYTIFIDGLCKNGYI 82
           +     T+ I +  + K G I
Sbjct: 682 IIPTAITWNILVRAVIKYGPI 702


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 18/251 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI+ Y K K++  A +++  M+  G +P+ V +  L  GL +   + +AF+++ ++    
Sbjct: 299 LIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTS 358

Query: 58  ------------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
                        R  +A +  TY   +DGLCK   +  + EL   +    CE +   Y 
Sbjct: 359 DSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYD 418

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK+G+++ A E+F  + +   +  V TY+ +I  ++ DG++D A  +   M ++
Sbjct: 419 ALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD 478

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEISLN 224
           +  PNV+T+  +I G  RI E  K ++LL  M+EK   P+    + ++D L K  +I L 
Sbjct: 479 SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDL- 537

Query: 225 SLPSFTVHERQ 235
           SL  FT   R+
Sbjct: 538 SLDLFTQMSRK 548



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  L  EM+ KG  PD   ++ +   L    +VE+AF LF EM+  GV  D 
Sbjct: 199 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 258

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++  LF  +R + C   +  Y+ LI    K+ ++  A ++FH 
Sbjct: 259 YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 318

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + VTY  ++ GL   G + KA +++  +                + + +APN
Sbjct: 319 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPN 378

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L+ G  + ++     ELL  M      P+  +   ++D   K
Sbjct: 379 VVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCK 426



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I+ A  ++ +M   G  P V  + +L   +F+  +++ A K+  +M +D 
Sbjct: 420 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 479

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGLC+ G   ++++L   +    C  ++  Y+ LIDGL K+G+++++L
Sbjct: 480 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 539

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + R     + VTY ++I+ L   G +DKA  L  +M++      +  +   I GF
Sbjct: 540 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 599

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  + +L +M+    +P A +  +++D  +K
Sbjct: 600 SKSFIAS--LGILEEMESYGTVPIAPVYGMLIDCFSK 634



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ A  L   MLS G +P+ ++++ L  G  +  +++ A ++F +M + G
Sbjct: 385 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 444

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  ID + K+G +  ++++   +    C  ++  Y+ +IDGLC+ G  E AL
Sbjct: 445 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 504

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       +VVTY+ +I GL   G++D + DLF  M     +PN +T+  LI+  
Sbjct: 505 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 564

Query: 182 IRINEPSKVIELLHKMKE 199
                  K   LL +MK+
Sbjct: 565 CAAGLLDKARLLLGEMKQ 582



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG--------------------- 40
           L++ YC  K+   A  L + M + G  P  V++N +FIG                     
Sbjct: 118 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN-IFIGSICGQEKLPSPDLLDLAEKIY 176

Query: 41  ---------------------LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
                                L  + + ++AF+L  EM R G   DT TY+  I  LC  
Sbjct: 177 GEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHA 236

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
             + ++  LF+ ++++    D+  Y+ LID  CK+G +E A  LF  +        VVTY
Sbjct: 237 TKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTY 296

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           + +IH      Q+ +A+D+F  M +    PN +T+G L+ G  +    SK  E+  K+
Sbjct: 297 TALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 354



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 41/258 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K K++     + + M+++G  P+  + N+L            A+KL + M   G
Sbjct: 83  LLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG 142

Query: 62  VAADTRTYTIFIDGLCKN-----------------------------------------G 80
                  Y IFI  +C                                           G
Sbjct: 143 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 202

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
              ++ +L + +       D   YS +I  LC + ++E A  LF  +    +  DV TY+
Sbjct: 203 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 262

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           I+I      G +++A  LF +M     +P V+T+  LIH +++  +  +  ++ H+M + 
Sbjct: 263 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 322

Query: 201 NVMPDASIVSIVVDLLAK 218
              P+      +VD L K
Sbjct: 323 GCRPNDVTYGALVDGLCK 340



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  +    + A++    M      P+VV + TL  G  +  Q+    ++ + M  +G
Sbjct: 48  MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 107

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
              +   +   +   C       + +L   +    C      Y+  I  +C   +     
Sbjct: 108 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 167

Query: 117 -LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            L++A +++  +     V + V  +     L   G+ DKA  L  +M      P+  T+ 
Sbjct: 168 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 227

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I       +  K   L  +MK   V PD    +I++D   K
Sbjct: 228 KVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 270



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   G   D  T   F   LCK G   +++++         +LD    + +I GL ++  
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDF---KLDTVLCTHMISGLMEASY 57

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            + A+   H +     + +VVTY  ++ G     Q+     +   M      PN   F +
Sbjct: 58  FDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 117

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
           L+H +    + +   +LL++M      P   + +I +  +   E     LPS
Sbjct: 118 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE----KLPS 165



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           +LI+ + K   +E A+ L+ EM+     +K D  ++ +L   L    QVE AF+L+ EM 
Sbjct: 627 MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 686

Query: 59  RDGVAADTRTYTIFIDGL 76
           R G   +   +   I GL
Sbjct: 687 RRGFVPELSVFVCLIKGL 704



 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C   ++E A  LYSEM  +G  P++ +   L  GL E+ + + A +L   +  +G
Sbjct: 665 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 724

Query: 62  V 62
           V
Sbjct: 725 V 725



 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR--D 60
           I G+  +K    +L +  EM S G  P   ++  L     +  ++E A +L  EM     
Sbjct: 596 IQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPS 653

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D   Y   I  LC    + E+  L+  +       ++  + CLI GL +  + + A
Sbjct: 654 SVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 713

Query: 121 LELFHSL 127
           L+L + +
Sbjct: 714 LQLCYGI 720


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 126/225 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ +LF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +A+DL  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL + ++++ A KLFDEM    
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKA 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAN 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        ++L +M    + PDA   +++++   K
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML K + P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M   A+ PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + N+     +L  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 75/155 (48%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I G  ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 119/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC++  ++ AL L   M  KG++ DV  +N++  GL ++++ + A  L   M   G
Sbjct: 406 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +T ++T  ID  CK G  VE+  +FR +       +I  Y+ LIDG  K G ++ A 
Sbjct: 466 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   L    L+ DV T + +IHG   DG++D A  LF +M +  + PNV+T+  +I G 
Sbjct: 526 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGL 585

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +  +L  +MKE  + PD ++ S +V  L   E
Sbjct: 586 SKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSAE 624



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK  ++E    L  E+ +KG+K +VV +N    G F+   +    ++   M+++
Sbjct: 230 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 289

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  TYT+ I G    G I E+  LF  +R    E D+  Y+ +I   C+SG ++ A
Sbjct: 290 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 349

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    L+    TY  +IHG+   GQM+ A  L  +M+   +  N + F TLI G
Sbjct: 350 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 409

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA----SIVSIVVDLLAKNE 220
           +       + + L   M++K +  D     SI S +  L  K+E
Sbjct: 410 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDE 453



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+    +IE A  L+ EM  KGI+ DV ++ ++         V+RA  LFDEM   
Sbjct: 300 LLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDK 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I G+CK G +  +  L   ++    +L+   ++ LIDG C+SG ++ A
Sbjct: 360 GLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEA 419

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  L +DV  Y+ +  GL    + D+A  L   M E  V+PN ++F TLI  
Sbjct: 420 LRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDI 479

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     +   +  +M+EK  +P+    ++++D  +K
Sbjct: 480 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSK 517



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C++  ++ AL L+ EM  KG+ P    +  L  G+ +  Q+E A  L +EMQ  G
Sbjct: 336 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   IDG C++G + E++ L   +     E D+ AY+ +  GLCK  R + A 
Sbjct: 396 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    +  + ++++ +I     +G   +A  +F +MEE    PN+IT+  LI G+
Sbjct: 456 GLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGY 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L  +++ + ++PD
Sbjct: 516 SKRGNMKEAHKLKDELENRGLIPD 539



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 86/164 (52%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A + F+ M++ G   D R+  +++  L + G +   +  FR +  L  E+ + + + ++D
Sbjct: 174 ALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLD 233

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           GLCK G +E+  +L   +    + A+VVTY+  I G +    +    ++   ME+  VA 
Sbjct: 234 GLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC 293

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           NV+T+  LIHGF  I +  +   L  +M+EK +  D  + + ++
Sbjct: 294 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSII 337



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L   Y  NK    AL  +  M  KG   D        + L    QV+   + F  M   
Sbjct: 160 LLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNL 219

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     + TI +DGLCK G +    +L   +     + ++  Y+  I+G  K   L   
Sbjct: 220 DVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGV 279

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +  +  +VVTY+++IHG  N G++++A  LF +M E  +  +V  + ++I  
Sbjct: 280 AEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISC 339

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R     + + L  +M +K ++P A
Sbjct: 340 NCRSGNVKRALVLFDEMTDKGLIPSA 365



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GY K   ++ A  L  E+ ++G+ PDV    +L  G     +V+ A KLFDEM + 
Sbjct: 510 VLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQR 569

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G+  +  TYT  I GL K+G   E+ +L+  ++      D   YS L+  L
Sbjct: 570 GLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 620


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   ++ A+  + +M+ KG+ P+VV++ +L   L    + E+A +L  E+   G
Sbjct: 223 VIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQG 282

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   +D LCK G ++ES +LF  L  +    D+  YS LIDG C +G+++ A+
Sbjct: 283 INPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAM 342

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D VTYS +I+G     +M+ A  LF +ME N V P++IT+  ++HG 
Sbjct: 343 KLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGL 402

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R    +   EL  ++ E     + S  +I++   AK 
Sbjct: 403 FRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKT 440



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 113/217 (52%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K  +++ A   Y EML + + PD V +N++   L +   ++RA ++   M    
Sbjct: 17  IIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVM---- 72

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   + G C +G   +++ +FR +     E D+  Y+ L+D LCK+G+   A 
Sbjct: 73  VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEAR 132

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  D+ TY  ++HG  + G + + HDL   M +N +  +   F  LI  +
Sbjct: 133 KIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAY 192

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +V+ +  KM+++ + P+A     V+D L K
Sbjct: 193 TKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCK 229



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC + + E A+ ++ +M S GI+PDVV +N+L   L +  +   A K+FD M + G
Sbjct: 83  IMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRG 142

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G    G +VE  +L   +     +LD   ++ LI    K  +++  +
Sbjct: 143 LKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVV 202

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L  + V Y  +I GL   G++D A   F  M +  + PNV+ + +LIH  
Sbjct: 203 LVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHAL 262

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++  K  EL+ ++ ++ + P+    + ++D L K
Sbjct: 263 CTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCK 299



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 97/185 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + E A  L  E+L +GI P++V  NT+   L +  +V  + KLFD +   G
Sbjct: 258 LIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIG 317

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG C  G +  +++L   +  +  + D   YS LI+G CK  R+E AL
Sbjct: 318 VNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDAL 377

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++HGL+   +   A +L+  + E+     + T+  ++  F
Sbjct: 378 ALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDF 437

Query: 182 IRINE 186
            + N 
Sbjct: 438 AKTNS 442



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           PDVV +NT+  GLF+   V++A+  + EM    V+ D  TY   I  L K   +  ++E+
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              + +  C      Y+ ++ G C SG+ E A+ +F  +    +  DVVTY+ ++  L  
Sbjct: 69  LTVMVMPNC----FTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +G+  +A  +F  M +  + P++ T+GTL+HG+       ++ +LL  M +  +  D  +
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHV 184

Query: 209 VSIVVDLLAKNE 220
            +I++    K E
Sbjct: 185 FNILICAYTKQE 196



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 117/282 (41%), Gaps = 70/282 (24%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG------LFEIH---------- 45
           L++  CKN +   A  ++  M+ +G+KPD+  + TL  G      L E+H          
Sbjct: 118 LMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNG 177

Query: 46  -------------------QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY----- 81
                              +V+    +F +M++ G+  +   Y   IDGLCK G      
Sbjct: 178 MQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAM 237

Query: 82  ----------IVESVELFRTLRILKCELD--------------------IQAYSCLIDGL 111
                     +  +V ++ +L    C  D                    I  ++ ++D L
Sbjct: 238 LNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSL 297

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           CK GR+  + +LF  L    +  DV+TYS +I G    G+MD A  L   M    + P+ 
Sbjct: 298 CKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDS 357

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +T+ TLI+G+ +IN     + L  +M+   V PD    +I++
Sbjct: 358 VTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIIL 399



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++GA+ L + M+S G+KPD V ++TL  G  +I+++E A  LF EM+ +G
Sbjct: 328 LIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNG 387

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I + GL +      + EL+  +     +L++  Y+ ++    K+  L +  
Sbjct: 388 VNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLMMHF 447

Query: 122 ELFHS 126
             F +
Sbjct: 448 GCFRT 452



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           +C  D+ +Y+ +IDGL K G ++ A   +H +    +  D VTY+ +I  L     MD+A
Sbjct: 6   RCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRA 65

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
            ++   M    V PN  T+ +++HG+    +  K I +  KM    + PD    + ++D 
Sbjct: 66  MEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDY 121

Query: 216 LAKN 219
           L KN
Sbjct: 122 LCKN 125


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 109/213 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+ K         +Y  M   GI P+   +N L         V++AFK+F EM+  
Sbjct: 233 VLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREK 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A    TY I I GLC+     E+V+L   +  +    +I  Y+ LI+G C  G+++ A
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+ L    L   +VTY+ +I G      +  A DL  +MEE  +AP+ +T+  LI  
Sbjct: 353 VRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R+N   K  E+   M++  ++PD    S+++
Sbjct: 413 FARLNYTEKACEMHSLMEKSGLVPDVYTYSVLI 445



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +  A NL+ +M   G+ P+   ++ L  G F+       F++++ M+R G
Sbjct: 199 LIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSG 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   I   C  G + ++ ++F  +R       +  Y+ LI GLC+  +   A+
Sbjct: 259 IVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAV 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H + +  L  ++VTY+I+I+G  + G+MD A  LF  ++ + ++P ++T+ TLI G+
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++   +  ++L+ +M+E+ + P     +I++D  A+
Sbjct: 379 SKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFAR 415



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 114/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C+ K+   A+ L  ++   G+ P++V +N L  G  ++ +++ A +LF++++  
Sbjct: 303 ILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSS 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++    TY   I G  K   +  +++L + +           Y+ LID   +    E A
Sbjct: 363 GLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +  LV DV TYS++IHGL   G M +A  LF  + E  + PN + + T+IHG
Sbjct: 423 CEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +     + + LL++M    ++P+ +     + LL ++E
Sbjct: 483 YCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDE 522



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 2/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+C   +++ A+ L++++ S G+ P +V +NTL  G  ++  +  A  L  EM+  
Sbjct: 338 ILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEER 397

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A    TYTI ID   +  Y  ++ E+   +       D+  YS LI GLC  G ++ A
Sbjct: 398 CIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEA 457

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF SL    L  + V Y+ MIHG   +G   +A  L  +M  + + PNV +F + I G
Sbjct: 458 SKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTI-G 516

Query: 181 FIRINEPSKVIE-LLHKMKEKNVMPDASIVSIV 212
            +  +E  K  E LL +M    + P  S+  +V
Sbjct: 517 LLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N Y  +   + AL     M+ +G  P     N L   L   +  ++A+ +F+E+ +  
Sbjct: 95  IVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL-KSK 153

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  ++ I I G C+ GY V+   L   L       ++  Y+ LIDG CK G + +A 
Sbjct: 154 VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAK 213

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY---------------------------------- 147
            LF  + R  LV +  TYS++++G +                                  
Sbjct: 214 NLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEY 273

Query: 148 -NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N G +DKA  +F +M E  +A  V+T+  LI G  R  +  + ++L+HK+ +  + P+ 
Sbjct: 274 CNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNI 333

Query: 207 SIVSIVVD 214
              +I+++
Sbjct: 334 VTYNILIN 341


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G CK    +    L  EM  +G +PDV+++NTL  GL +  +++ A +L   M R 
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   ++  C++  +  +  L + +    C  D+  Y+ +I GLC+  RL+ A
Sbjct: 236 GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDA 295

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD------KAHDLFLDMEENAVAPNVITF 174
             L   +     V DV+TYS +I GL  D ++D       A ++   M++    PN  T+
Sbjct: 296 QALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +I G  R  +  + + LL +M +  V+PD S  S+V+  L K+
Sbjct: 356 AVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 1/193 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+   + +L  GL +  ++++A++L DEM+  G+      +   I GLCK G   +++  
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHGLY 147
           F+T+   KC  DI  ++ L+D L KSGR+E A ++F S+      + +VVTY+ +I+GL 
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
            DG++D+A +L   M E    PNVIT+  L+ G  +     K   LL +M  +   PD  
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207

Query: 208 IVSIVVDLLAKNE 220
           + + +++ L K+ 
Sbjct: 208 MYNTLLNGLCKSR 220



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  L  EM  +GI P V +HN +  GL +  +   A   F  +    
Sbjct: 36  LIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTK 95

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCKSGRLEIA 120
              D  T+ I +D L K+G + E+ ++F ++    +C  ++  Y+ +I+GLCK G+L+ A
Sbjct: 96  CTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRA 155

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       +V+TYS+++ GL   G+ DK   L  +M      P+VI + TL++G
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNG 215

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +     + +EL+  M      P     + +++L  +++
Sbjct: 216 LCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK+ +++ A+ L   M   G  P+V+ ++ L  GL +  + ++ F L  EM R G
Sbjct: 142 VINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   ++GLCK+  + E++EL + +    C   +  Y+ L++  C+S +++ A 
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAF 261

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       DV+ Y+ +I GL  D ++D A  L   M      P+VIT+ T+I G 
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321

Query: 182 I---RINEPSKV---IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
               R++   K+    E+L  MK+    P+A   ++V++ L +   S  +L
Sbjct: 322 CKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL++   K+  +E A  ++  M  S    P+VV + T+  GL +  +++RA +L D M  
Sbjct: 105 ILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNE 164

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  TY++ ++GLCK G   +   L + +     + D+  Y+ L++GLCKS RL+ 
Sbjct: 165 TGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALEL   + R      VVTY+ ++       Q+D+A  L   M E    P+VI + T+I 
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  R         LL +M     +PD    S ++D L K+
Sbjct: 285 GLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKD 324



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK++ ++ AL L   M+  G  P VV +N+L        QV+RAF+L   M   G
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
              D   Y   I GLC++  + ++  L + +   +C  D+  YS +IDGLCK  R     
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW 331

Query: 117 -LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            LE A E+   + +     +  TY+++I GL    +  +A  L   M ++ V P++ +F 
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I    + ++     ++   M E+   P+    + ++D L+K 
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKG 435



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 115/225 (51%), Gaps = 11/225 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL------FD 55
           +I G C++  ++ A  L  +M++    PDV+ ++T+  GL +  +V+  +KL       +
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCK 113
            M++ G   +  TY + I+GLC+     +++ L R  R++  E+  D+ ++S +I  LCK
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR--RMIDSEVVPDLSSFSMVIGSLCK 399

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           S  L+ A ++F  +       + V Y+ +I GL   G++DKA  +F  M E +  P V T
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVAT 458

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +++ G   +    + + ++  M  K   PD +    ++  L +
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 1/179 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+ ++ + AL L   M+   + PD+   + +   L + H ++ A+K+F  M   
Sbjct: 357 VVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSER 416

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   Y   IDGL K G + ++V +F  L +      +  Y+ ++DGLC  GR+E A
Sbjct: 417 ECKPNPVAYAALIDGLSKGGEVDKAVRVFE-LMVESFRPGVATYNSVLDGLCGVGRIEEA 475

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + +   +       D  +Y  +I GL     +++A++LF  +E    A  V  +  L++
Sbjct: 476 VRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 7/159 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD---EM 57
           ++I   CK+ +++ A  ++  M  +  KP+ V +  L  GL +  +V++A ++F+   E 
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES 451

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            R GVA    TY   +DGLC  G I E+V +   +   +C  D  +Y  LI GLC+   +
Sbjct: 452 FRPGVA----TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCV 507

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           E A ELF ++       +V  Y+++++ L    ++  AH
Sbjct: 508 EEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAH 546



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 39/179 (21%)

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-----HSLPRG 130
           L + G   ++V+LFR  R +  E     Y  LI GLCK+G+L+ A EL        +P G
Sbjct: 8   LVRAGQHGQAVQLFREERCVPNEF---TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 131 VLV------------------------------ADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           V V                               D++T++I++  L   G++++A  +F 
Sbjct: 65  VAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFE 124

Query: 161 DMEENAVA-PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            M  ++   PNV+T+ T+I+G  +  +  + IELL  M E    P+    S++V+ L K
Sbjct: 125 SMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G CK    +    L  EM  +G +PDV+++NTL  GL +  +++ A +L   M R 
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   ++  C++  +  +  L + +    C  D+  Y+ +I GLC+  RL+ A
Sbjct: 236 GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDA 295

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD------KAHDLFLDMEENAVAPNVITF 174
             L   +     V DV+TYS +I GL  D ++D       A ++   M++    PN  T+
Sbjct: 296 QALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +I G  R  +  + + LL +M +  V+PD S  S+V+  L K+
Sbjct: 356 AVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 1/193 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+   + +L  GL +  ++++A++L DEM+  G+      +   I GLCK G   +++  
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHGLY 147
           F+T+   KC  DI  ++ L+D L KSGR+E A ++F S+      + +VVTY+ +I+GL 
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
            DG++D+A +L   M E    PNVIT+  L+ G  +     K   LL +M  +   PD  
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207

Query: 208 IVSIVVDLLAKNE 220
           + + +++ L K+ 
Sbjct: 208 MYNTLLNGLCKSR 220



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  L  EM  +GI P V +HN +  GL +  +   A   F  +    
Sbjct: 36  LIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTK 95

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCKSGRLEIA 120
              D  T+ I +D L K+G + E+ ++F ++    +C  ++  Y+ +I+GLCK G+L+ A
Sbjct: 96  CTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRA 155

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       +V+TYS+++ GL   G+ DK   L  +M      P+VI + TL++G
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNG 215

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +     + +EL+  M      P     + +++L  +++
Sbjct: 216 LCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK+ +++ A+ L   M   G  P+V+ ++ L  GL +  + ++ F L  EM R G
Sbjct: 142 VINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   ++GLCK+  + E++EL + +    C   +  Y+ L++  C+S +++ A 
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAF 261

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       DV+ Y+ +I GL  D ++D A  L   M      P+VIT+ T+I G 
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321

Query: 182 I---RINEPSKV---IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
               R++   K+    E+L  MK+    P+A   ++V++ L +   S  +L
Sbjct: 322 CKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL++   K+  +E A  ++  M  S    P+VV + T+  GL +  +++RA +L D M  
Sbjct: 105 ILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNE 164

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  TY++ ++GLCK G   +   L + +     + D+  Y+ L++GLCKS RL+ 
Sbjct: 165 TGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALEL   + R      VVTY+ ++       Q+D+A  L   M E    P+VI + T+I 
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  R         LL +M     +PD    S ++D L K+
Sbjct: 285 GLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKD 324



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK++ ++ AL L   M+  G  P VV +N+L        QV+RAF+L   M   G
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
              D   Y   I GLC++  + ++  L + +   +C  D+  YS +IDGLCK  R     
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW 331

Query: 117 -LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            LE A E+   + +     +  TY+++I GL    +  +A  L   M ++ V P++ +F 
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +I    + ++     ++   M E+   P+    + ++D L+K 
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKG 435



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 115/225 (51%), Gaps = 11/225 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL------FD 55
           +I G C++  ++ A  L  +M++    PDV+ ++T+  GL +  +V+  +KL       +
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCK 113
            M++ G   +  TY + I+GLC+     +++ L R  R++  E+  D+ ++S +I  LCK
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR--RMIDSEVVPDLSSFSMVIGSLCK 399

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           S  L+ A ++F  +       + V Y+ +I GL   G++DKA  +F  M E +  P V T
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVAT 458

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +++ G   +    + + ++  M  K   PD +    ++  L +
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 1/179 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+ ++ + AL L   M+   + PD+   + +   L + H ++ A+K+F  M   
Sbjct: 357 VVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSER 416

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   Y   IDGL K G + ++V +F  L +      +  Y+ ++DGLC  GR+E A
Sbjct: 417 ECKPNPVAYAALIDGLSKGGEVDKAVRVFE-LMVESFRPGVATYNSVLDGLCGVGRIEEA 475

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + +   +       D  +Y  +I GL     +++A++LF  +E    A  V  +  L++
Sbjct: 476 VRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 7/159 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD---EM 57
           ++I   CK+ +++ A  ++  M  +  KP+ V +  L  GL +  +V++A ++F+   E 
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES 451

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            R GVA    TY   +DGLC  G I E+V +   +   +C  D  +Y  LI GLC+   +
Sbjct: 452 FRPGVA----TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCV 507

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           E A ELF ++       +V  Y+++++ L    ++  AH
Sbjct: 508 EEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAH 546



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 39/179 (21%)

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-----HSLPRG 130
           L + G   ++V+LFR  R +  E     Y  LI GLCK+G+L+ A EL        +P G
Sbjct: 8   LVRAGQHGQAVQLFREERCVPNEF---TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 131 VLV------------------------------ADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           V V                               D++T++I++  L   G++++A  +F 
Sbjct: 65  VAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFE 124

Query: 161 DMEENAVA-PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            M  ++   PNV+T+ T+I+G  +  +  + IELL  M E    P+    S++V+ L K
Sbjct: 125 SMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 17/235 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGI----------------KPDVVIHNTLFIGLFEI 44
           LI+G+CK  ++E A  ++  M  SK +                +P+VVI+  L  G  ++
Sbjct: 594 LIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKL 653

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           H+VE A KL D M  +G   +   Y   IDGLCK G + E+ E+   +        +  Y
Sbjct: 654 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTY 713

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           S LID   K  R ++A ++   +       +VV Y+ MI GL   G+ D+A+ L   MEE
Sbjct: 714 SSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEE 773

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               PNV+T+  +I GF RI +    +ELL +M  K V P+     +++D   KN
Sbjct: 774 KGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 828



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 17/229 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + E A ++  EM+ +G  PD   ++ +   L    ++E AF LF+EM+R G+ AD 
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI +D  CK G I ++ + F  +R + C  ++  Y+ LI    K+ ++  A ELF +
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF-----------LDM------EENAVAP 169
           +     + ++VTYS +I G    GQM+KA  +F           +DM      ++N+  P
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERP 638

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           NV+ +G L+ GF +++   +  +LL  M  +   P+  +   ++D L K
Sbjct: 639 NVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 687



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 17/235 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ +CK   IE A   ++EM   G  P+VV +  L     +  +V  A +LF+ M  +
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----------------- 103
           G   +  TY+  IDG CK G + ++ ++F  +   K   D+                   
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVI 642

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           Y  L+DG CK  R+E A +L  ++       + + Y  +I GL   G++D+A ++  +M 
Sbjct: 643 YGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMS 702

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           E+     + T+ +LI  + ++       ++L KM E +  P+  I + ++D L K
Sbjct: 703 EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 757



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  + +EM   G    +  +++L    F++ + + A K+  +M  + 
Sbjct: 681 LIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS 740

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  IDGLCK G   E+ +L + +    C+ ++  Y+ +IDG  + G++E  L
Sbjct: 741 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCL 800

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  + VTY ++I     +G +D AH+L  +M++     +   +  +I GF
Sbjct: 801 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGF 860

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E  + + LL ++ + +  P  S+  ++VD L K +
Sbjct: 861 NK--EFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQ 897



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 35/228 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  + + A  L   M  KG +P+VV +  +  G   I ++E   +L + M   G
Sbjct: 751 MIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKG 810

Query: 62  VAADTRTYTIFIDGLCKNGYI---------------------------------VESVEL 88
           VA +  TY + ID  CKNG +                                 +ES+ L
Sbjct: 811 VAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGL 870

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP--RGVLVADVVTYSIMIHGL 146
              +        +  Y  L+D L K+ RLE+AL L   +      LV    TY+ +I  L
Sbjct: 871 LDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 930

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
               ++DKA  LF +M +  V P + TF +LI G  R ++ S+ + LL
Sbjct: 931 CLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLL 978



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 113/291 (38%), Gaps = 80/291 (27%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+    E A++  + M +    P+VV ++TL  G     Q+ R  ++ + M  +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
                + +   +   C +G    + +L +  +++KC                        
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLK--KMVKCGHTPGYVVYNILIGSICGDKDSLS 425

Query: 98  ----ELDIQAYSCLIDG---------------LCKSGR---------------------- 116
               EL  +AYS ++                 LC +G+                      
Sbjct: 426 CHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 117 -------------LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
                        +E+A  LF  + RG LVADV TY+IM+      G +++A   F +M 
Sbjct: 486 YSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           E    PNV+T+  LIH +++  + S   EL   M  +  +P+    S ++D
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 3/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  YC++     AL     +     +P    +N L     +   ++ A  +  EM   
Sbjct: 205 VLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLA 264

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T   +   LCK G   E++ L  T   +    D   Y+ LI GLC++   E A
Sbjct: 265 NLRMDGFTLRCYAYSLCKVGKWREALTLMETENFVP---DTVFYTKLISGLCEASLFEEA 321

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +     + +VVTYS ++ G  N  Q+ +   +   M      P+   F +L+H 
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
           +    + S   +LL KM +    P   + +I++  +  ++ SL+
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLS 425



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 9/217 (4%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  +   AL L   M ++   PD V +  L  GL E    E A    + M+      + 
Sbjct: 281 CKVGKWREALTL---METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNV 337

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY+  + G      +     +   + +  C    + ++ L+   C SG    A +L   
Sbjct: 338 VTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKK 397

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQ------MDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +       V Y+I+I  +  D        ++ A   + +M    V  N I   +    
Sbjct: 398 MVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRC 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
                +  K   ++ +M  +  +PD S  S V+  L 
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLC 494



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM--LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           +L++   K + +E AL L  E+   S  +      +N+L   L   ++V++AF+LF EM 
Sbjct: 888 LLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMS 947

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           + GV  + +T+   I GL +N  I E++ L   +  + C L
Sbjct: 948 KKGVIPEMQTFCSLIKGLFRNSKISEALLLLDFISHMVCPL 988


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 114/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+SEM++KGI PD+  +N+L   L  + + +    L +EM    
Sbjct: 258 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 317

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++  +D LCK G I  + ++   +     E D+  Y+ L+DG C    ++ A+
Sbjct: 318 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV 377

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F ++     V +V +Y+I+I+G     +MDKA  L   M    +  + +T+ TLIHG 
Sbjct: 378 KVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL 437

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      I L H+M     +PD     I++D L KN 
Sbjct: 438 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNH 476



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L ++M S GI PDV   N L      + ++  AF +  ++ + G
Sbjct: 118 LLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLG 177

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I GLC  G I E++ LF        + D+  Y  L++GLCK G    A+
Sbjct: 178 CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAI 237

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +     +V+ Y+ +I  L  D Q+ +A +LF +M    ++P++ T+ +LIH  
Sbjct: 238 RLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHAL 297

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M    +MP+  + S VVD L K
Sbjct: 298 CNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 334



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C  + +  A ++ +++L  G +PD    NTL  GL    ++  A  LFD+   +
Sbjct: 152 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 211

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++GLCK G    ++ L R++    C  ++ AY+ +ID LCK  ++  A
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 271

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ +IH L N  +      L  +M  + + PNV+ F T++  
Sbjct: 272 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 331

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +    +   +++  M ++ V PD    + ++D
Sbjct: 332 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMD 365



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ + + +G +PDVV + TL  GL ++     A +L   M +  
Sbjct: 188 LIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN 247

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   ID LCK+  + E+  LF  +       DI  Y+ LI  LC     +   
Sbjct: 248 CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT 307

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ +VV +S ++  L  +G +  AHD+   M +  V P+V+T+  L+ G 
Sbjct: 308 TLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGH 367

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              +E  + +++   M  K  +P+    +I+++
Sbjct: 368 CLRSEMDEAVKVFDTMVHKGCVPNVRSYNILIN 400



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 91/167 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C   E++ A+ ++  M+ KG  P+V  +N L  G  +I ++++A  L ++M   G
Sbjct: 363 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ADT TY   I GLC  G +  ++ LF  +       D+  Y  L+D LCK+  L  A+
Sbjct: 423 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 482

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            L  ++    L AD++ Y+I I G+   G+++ A DLF ++     A
Sbjct: 483 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGFA 529



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+ + ++ A+ L  +M  +G+  D V +NTL  GL  + +++ A  LF EM   
Sbjct: 397 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 456

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I +D LCKN ++ E++ L + +     + DI  Y+  IDG+C++G LE A
Sbjct: 457 GQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA 516

Query: 121 LELFHSL 127
            +LF +L
Sbjct: 517 RDLFSNL 523



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 94/185 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK   I  A ++   M+ +G++PDVV +  L  G     +++ A K+FD M   G
Sbjct: 328 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 387

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + R+Y I I+G C+   + +++ L   + +     D   Y+ LI GLC  GRL+ A+
Sbjct: 388 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 447

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH +     + D+VTY I++  L  +  + +A  L   +E + +  +++ +   I G 
Sbjct: 448 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGM 507

Query: 182 IRINE 186
            R  E
Sbjct: 508 CRAGE 512



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           ++ A   F+ M        T  +T  +  + K  +    + L   +       D+   + 
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI+  C   RL  A  +   L +     D  T++ +I GL  +G++ +A  LF       
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 212

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             P+V+T+GTL++G  ++   S  I LL  M +KN  P+    + ++D L K+ 
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDR 266


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 18/251 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI+ Y K K++  A +++  M+  G +P+ V +  L  GL +   + +AF+++ ++    
Sbjct: 364 LIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTS 423

Query: 58  ------------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
                        R  +A +  TY   +DGLCK   +  + EL   +    CE +   Y 
Sbjct: 424 DSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYD 483

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK+G+++ A E+F  + +   +  V TY+ +I  ++ DG++D A  +   M ++
Sbjct: 484 ALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD 543

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEISLN 224
           +  PNV+T+  +I G  RI E  K ++LL  M+EK   P+    + ++D L K  +I L 
Sbjct: 544 SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDL- 602

Query: 225 SLPSFTVHERQ 235
           SL  FT   R+
Sbjct: 603 SLDLFTQMSRK 613



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  L  EM+ KG  PD   ++ +   L    +VE+AF LF EM+  GV  D 
Sbjct: 264 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 323

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++  LF  +R + C   +  Y+ LI    K+ ++  A ++FH 
Sbjct: 324 YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 383

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + VTY  ++ GL   G + KA +++  +                + + +APN
Sbjct: 384 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPN 443

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L+ G  + ++     ELL  M      P+  +   ++D   K
Sbjct: 444 VVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCK 491



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I+ A  ++ +M   G  P V  + +L   +F+  +++ A K+  +M +D 
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGLC+ G   ++++L   +    C  ++  Y+ LIDGL K+G+++++L
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + R     + VTY ++I+ L   G +DKA  L  +M++      +  +   I GF
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 664

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  + +L +M+    +P A +  +++D  +K
Sbjct: 665 SKSFIAS--LGILEEMESYGTVPIAPVYGMLIDCFSK 699



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ A  L   MLS G +P+ ++++ L  G  +  +++ A ++F +M + G
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  ID + K+G +  ++++   +    C  ++  Y+ +IDGLC+ G  E AL
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       +VVTY+ +I GL   G++D + DLF  M     +PN +T+  LI+  
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629

Query: 182 IRINEPSKVIELLHKMKE 199
                  K   LL +MK+
Sbjct: 630 CAAGLLDKARLLLGEMKQ 647



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG--------------------- 40
           L++ YC  K+   A  L + M + G  P  V++N +FIG                     
Sbjct: 183 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN-IFIGSICGQEKLPSPDLLDLAEKIY 241

Query: 41  ---------------------LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
                                L  + + ++AF+L  EM R G   DT TY+  I  LC  
Sbjct: 242 GEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHA 301

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
             + ++  LF+ ++++    D+  Y+ LID  CK+G +E A  LF  +        VVTY
Sbjct: 302 TKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTY 361

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           + +IH      Q+ +A+D+F  M +    PN +T+G L+ G  +    SK  E+  K+
Sbjct: 362 TALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 41/258 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K K++     + + M+++G  P+  + N+L            A+KL + M   G
Sbjct: 148 LLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG 207

Query: 62  VAADTRTYTIFIDGLCKN-----------------------------------------G 80
                  Y IFI  +C                                           G
Sbjct: 208 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 267

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
              ++ +L + +       D   YS +I  LC + ++E A  LF  +    +  DV TY+
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           I+I      G +++A  LF +M     +P V+T+  LIH +++  +  +  ++ H+M + 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 201 NVMPDASIVSIVVDLLAK 218
              P+      +VD L K
Sbjct: 388 GCRPNDVTYGALVDGLCK 405



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 7/203 (3%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G +P  V +N L   L    QV+  F++  EM   G   D  T   F   LCK G   ++
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           +++         +LD    + +I GL ++   + A+   H +     + +VVTY  ++ G
Sbjct: 95  LDMIEREDF---KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSG 151

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                Q+     +   M      PN   F +L+H +    + +   +LL++M      P 
Sbjct: 152 FLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 211

Query: 206 ASIVSIVVDLLAKNEISLNSLPS 228
             + +I +  +   E     LPS
Sbjct: 212 YVVYNIFIGSICGQE----KLPS 230



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  +    + A++    M      P+VV + TL  G  +  Q+    ++ + M  +G
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 172

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
              +   +   +   C       + +L   +    C      Y+  I  +C   +     
Sbjct: 173 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 232

Query: 117 -LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            L++A +++  +     V + V  +     L   G+ DKA  L  +M      P+  T+ 
Sbjct: 233 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 292

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I       +  K   L  +MK   V PD    +I++D   K
Sbjct: 293 KVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 335



 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           +LI+ + K   +E A+ L+ EM+     +K D  ++ +L   L    QVE AF+L+ EM 
Sbjct: 692 MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751

Query: 59  RDGVAADTRTYTIFIDGL 76
           R G   +   +   I GL
Sbjct: 752 RRGFVPELSVFVCLIKGL 769



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL 53
           LI   C   ++E A  LYSEM  +G  P++ +   L  GL E+ + + A +L
Sbjct: 730 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR--D 60
           I G+  +K    +L +  EM S G  P   ++  L     +  ++E A +L  EM     
Sbjct: 661 IQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPS 718

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D   Y   I  LC    + E+  L+  +       ++  + CLI GL +  + + A
Sbjct: 719 SVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEA 778

Query: 121 LELFHSL 127
           L+L + +
Sbjct: 779 LQLCYGI 785


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC++  ++ AL L   M  KG++ DV  +N++  GL ++++ + A  L   M   G
Sbjct: 410 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +T ++T  ID  CK G  VE+  +FR +       +I  Y+ LIDG  K G ++ A 
Sbjct: 470 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   L    L+ DV T + +IHG   DG++D A  LF +M +  + PNV+T+  +I G 
Sbjct: 530 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGL 589

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
            +     +  +L  +MKE  + PD ++ S +V  L   + S++
Sbjct: 590 SKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADESIS 632



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK  ++E    L  E+ +KG+K +VV +N    G F+   +    ++   M+++
Sbjct: 234 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 293

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  TYT+ I G    G I E+  LF  +R    E D+  Y+ +I   C+SG ++ A
Sbjct: 294 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 353

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    L+    TY  +IHG+   GQM+ A  L  +M+   +  N + F TLI G
Sbjct: 354 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 413

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA----SIVSIVVDLLAKNE 220
           +       + + L   M++K +  D     SI S +  L  K+E
Sbjct: 414 YCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDE 457



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+    +IE A  L+ EM  KGI+ DV ++ ++         V+RA  LFDEM   
Sbjct: 304 LLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDK 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I G+CK G +  +  L   ++    +L+   ++ LIDG C+SG ++ A
Sbjct: 364 GLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEA 423

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  L +DV  Y+ +  GL    + D+A  L   M E  V+PN ++F TLI  
Sbjct: 424 LRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDI 483

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +     +   +  +M+EK  +P+    ++++D  +K
Sbjct: 484 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSK 521



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C++  ++ AL L+ EM  KG+ P    +  L  G+ +  Q+E A  L +EMQ  G
Sbjct: 340 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 399

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +   IDG C++G + E++ L   +     E D+ AY+ +  GLCK  R + A 
Sbjct: 400 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 459

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    +  + ++++ +I     +G   +A  +F +MEE    PN+IT+  LI G+
Sbjct: 460 GLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGY 519

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L  +++ + ++PD
Sbjct: 520 SKRGNMKEAHKLKDELENRGLIPD 543



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 86/164 (52%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A + F+ M++ G   D R+  +++  L + G +   +  FR +  L  E+ + + + ++D
Sbjct: 178 ALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLD 237

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           GLCK G +E+  +L   +    + A+VVTY+  I G +    +    ++   ME+  VA 
Sbjct: 238 GLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC 297

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           NV+T+  LIHGF  I +  +   L  +M+EK +  D  + + ++
Sbjct: 298 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSII 341



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L   Y  NK    AL  +  M  KG   D        + L    QV+   + F  M   
Sbjct: 164 LLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNL 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     + TI +DGLCK G +    +L   +     + ++  Y+  I+G  K   L   
Sbjct: 224 DVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGV 283

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +  +  +VVTY+++IHG  N G++++A  LF +M E  +  +V  + ++I  
Sbjct: 284 AEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISC 343

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R     + + L  +M +K ++P A
Sbjct: 344 NCRSGNVKRALVLFDEMTDKGLIPSA 369



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GY K   ++ A  L  E+ ++G+ PDV    +L  G     +V+ A KLFDEM + 
Sbjct: 514 VLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQR 573

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G+  +  TYT  I GL K+G   E+ +L+  ++      D   YS L+  L
Sbjct: 574 GLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 39/230 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+ K +E A +L  +M + G+K DVV +NTL  GL +  +++ A +L + M+  G
Sbjct: 158 LISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-------------IL------------- 95
            A D   Y+ F+ GLCK+G ++++ ++   +R             IL             
Sbjct: 218 CAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTAL 277

Query: 96  ----------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                      C L++  YS ++DGLCK GR + A  +  ++ R     DVVTYS +++G
Sbjct: 278 EMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNG 337

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIE 192
           L   G++++A +   +M      PN +T+ +L+HG     R+ E  +++E
Sbjct: 338 LCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVE 387



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 6/230 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
            + G CK+ ++  A  +  +M      P+VV +NT+  GL +  +++ A ++ ++M   D
Sbjct: 228 FVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSD 287

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y+  +DGLCK G   E+  +   +    C  D+  YS L++GLCK+G++E A
Sbjct: 288 GCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEA 347

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-----EENAVAPNVITFG 175
           +E    +       + VTY  ++HGL + G++ +A  +  +M       +   P+V T+ 
Sbjct: 348 VEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYN 407

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            LI G  +       ++   +M+ +   PD    S +V+ LA++  +L +
Sbjct: 408 ALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 107/200 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK  ++E +  L  E++S+G++PD +++  +   L +  ++  A +L +EM R G
Sbjct: 88  LLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAG 147

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   I G C+   +  +  L + +     + D+  Y+ L+DGLCK+GRL+ A 
Sbjct: 148 CCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAE 207

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       DVV YS  ++GL   G++  AH +   M ++   PNV+T+ T++ G 
Sbjct: 208 QLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGL 267

Query: 182 IRINEPSKVIELLHKMKEKN 201
            +  +    +E++ +M   +
Sbjct: 268 CKSGKIDTALEMMEQMASSD 287



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK--PDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           L+ G CK +    A  L  +M+S+G +  PD+V ++TL  G  +  +VE + +L  E+  
Sbjct: 51  LLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVIS 110

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT  +  LCK+  + E++EL   +    C   +  ++ LI G C+   LE+
Sbjct: 111 RGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEM 170

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L   +    + ADVVTY+ ++ GL   G++ +A  L   M+ +  AP+V+ + + ++
Sbjct: 171 ADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVY 230

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +  +     ++L +M++ +  P+    + ++D L K+
Sbjct: 231 GLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKS 270



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           L+NG+ K         L   M ++ I+P+VV +N L  GL ++ +   A +L  +M  R 
Sbjct: 16  LVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRG 75

Query: 61  GVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G +  D  TY+  + G CK G + ES EL + +       D   Y+ ++  LCKS RL  
Sbjct: 76  GRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGE 135

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALEL   + R      ++T++ +I G   +  ++ A  L   M  + V  +V+T+ TL+ 
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMD 195

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +     +  +LL +MK     PD    S  V  L K+
Sbjct: 196 GLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKS 235



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 2/195 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P+ V  N L  G  +  +     +L + M    +  +  +Y   ++GLCK     E+
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 86  VELFRTL--RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
            EL R +  R  +   D+  YS L+ G CK+G++E + EL   +    L  D + Y+ ++
Sbjct: 65  EELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVV 124

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L    ++ +A +L  +M      P +ITF TLI G  R         LL KM    V 
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVK 184

Query: 204 PDASIVSIVVDLLAK 218
            D    + ++D L K
Sbjct: 185 ADVVTYNTLMDGLCK 199



 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 40/132 (30%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH--------------------------- 34
           L+NG CK  +IE A+    EM  +G KP+ V +                           
Sbjct: 334 LVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGG 393

Query: 35  -------------NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
                        N L  GL +  +++ A K F  M+  G   D  +Y+  ++GL ++G 
Sbjct: 394 GGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGR 453

Query: 82  IVESVELFRTLR 93
            +++  +   +R
Sbjct: 454 ALQAEMILSEVR 465


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 112/216 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK   +E A +L  +M+  G  PDVV +NT+  GL +  +VE A  LF+EM+R 
Sbjct: 85  VMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERL 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   + R++   I GLC+   I ++ ++F  +       D  +Y  LIDGL K+G+L  A
Sbjct: 145 GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    +    VTY+++IHG+     +D+A +LF  M      P+  TF  LI  
Sbjct: 205 YKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  +  +   LL +M +   +PD    S ++  L
Sbjct: 265 HCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+  +I+ A  ++ EM +K I PD   +  L  GL +  ++  A+KLF  M   G
Sbjct: 156 IILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + I G+C    + E++ELF+++R   C      ++ LID  CK G+L+ A 
Sbjct: 216 ITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAF 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V DVVTYS +I GL +  ++D A  L  DM +    P V+T  TLIHG 
Sbjct: 276 RLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  E+L  M      PD
Sbjct: 336 CKAGRIKEAREVLDAMVSSGQSPD 359



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 104/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G C    ++ AL L+  M SKG +P     N L     +  +++ AF+L   M  D
Sbjct: 225 VVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDD 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+  I GLC    + ++  L   +   +C+  +   + LI GLCK+GR++ A
Sbjct: 285 GHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+  ++       DVVTY+ ++HG    GQ ++A +L  DM    +APNV+T+  L+ G
Sbjct: 345 REVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             + N   +   +  +MK     P+
Sbjct: 405 LCKANRLPEACGVFAQMKSSGCAPN 429



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C     + A  L+++M  +G  P  V +N +     +   +E A  L  +M  DG
Sbjct: 51  LIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   +DGLCK+  + E++ LF  +  L C  + ++++ +I GLC+  +++ A 
Sbjct: 111 HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQAC 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +    +  D  +Y I+I GL   G++++A+ LF  M ++ + P+ +T+  +IHG 
Sbjct: 171 QVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGM 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  + +EL   M+ K   P     +I++D   K 
Sbjct: 231 CLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKR 268



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 114/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  ++  A NL+ ++L  G+ P  V + +L  GL   +  + A +LF +M R 
Sbjct: 15  ILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRR 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY + ID  CK G + E+ +L + +       D+  Y+ ++DGLCKS R+E A
Sbjct: 75  GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF+ + R     +  +++ +I GL    ++D+A  +F +ME   + P+  ++G LI G
Sbjct: 135 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDG 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  + ++  +L  +M +  + P A   ++V+
Sbjct: 195 LAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI 227



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 111/226 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK  +++ A  L   M   G  PDVV ++TL  GL  I +V+ A  L ++M + 
Sbjct: 260 ILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKR 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  T    I GLCK G I E+ E+   +       D+  Y+ L+ G C++G+ E A
Sbjct: 320 QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERA 379

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L  +VVTY+ ++ GL    ++ +A  +F  M+ +  APN+ T+  LI G
Sbjct: 380 RELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILG 439

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           F    +    ++L  +M    + PD  +   +   L K+  S  +L
Sbjct: 440 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARAL 485



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +E AL L++EM   G  P+   HNT+ +GL +  ++++A ++F EM+   
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLEI 119
           +  D+ +Y I IDGL K G + E+ +LF+  R+L   +   A  Y+ +I G+C +  L+ 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQ--RMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALELF S+          T++I+I      G++D+A  L   M ++   P+V+T+ TLI 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G   I        LL  M ++   P     + ++  L K
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 99/198 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C    ++ A +L  +M+ +  KP VV  NTL  GL +  +++ A ++ D M   G
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY   + G C+ G    + EL   +       ++  Y+ L+ GLCK+ RL  A 
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       ++ TY+ +I G  + GQ+D    LF +M    ++P+ + +GTL    
Sbjct: 416 GVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475

Query: 182 IRINEPSKVIELLHKMKE 199
            +    ++ +E+L + +E
Sbjct: 476 CKSGRSARALEILREGRE 493



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  + + PD   +  L  GL +  ++  A  LF ++   GV   T  YT  I GLC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
             ++ ELF  +    C      Y+ +ID  CK G LE A +L   +     V DVVTY+ 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++ GL    ++++A  LF +ME     PN  +  T+I G  + ++  +  ++ H+M+ K+
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 202 VMPDASIVSIVVDLLAK 218
           + PD+    I++D LAK
Sbjct: 181 IPPDSWSYGILIDGLAK 197



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   I+ A  +   M+S G  PDVV +NTL  G     Q ERA +L  +M   G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  + GLCK   + E+  +F  ++   C  ++  Y+ LI G C +G+++  L
Sbjct: 391 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL 450

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN----AVAPNVITFGTL 177
           +LF  +    +  D V Y  +   L   G+  +A ++  +  E+    A    V  F   
Sbjct: 451 KLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFA-- 508

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + G +   +    +  +  M     +P     + +V  L K+
Sbjct: 509 VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKS 550



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D  +Y  LIDGL K+G+L  A  LF  L    +    V Y+ +IHGL      D A +LF
Sbjct: 9   DSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 68

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            DM      P+ +T+  +I    +     +  +L+ KM E   +PD    + V+D L K+
Sbjct: 69  ADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKS 128

Query: 220 EISLNSLPSFTVHER 234
                +L  F   ER
Sbjct: 129 SRVEEALLLFNEMER 143


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + ++ A  +  +M+ + I P+   +N+L  G     Q   A ++  EM RDG
Sbjct: 162 VIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDG 221

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL---------- 111
              +  TY + ID LCK+G+  E+ E+F ++     + D   Y  L+ G           
Sbjct: 222 QRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMN 281

Query: 112 -------------------------CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                    CK GRL+ A   F  + +   + D+VTY+ +I GL
Sbjct: 282 NVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGL 341

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A   F  M ++ ++PN+ITF TLIHGF    +  K  EL ++M ++ + PD 
Sbjct: 342 CKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDV 401

Query: 207 SIVSIVVDLLAK 218
           +I + ++D L K
Sbjct: 402 TIFTAMIDRLFK 413



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 3/203 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK+     A  +++ M+  G KPD   + +L  G      +     + D M ++
Sbjct: 231 MLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQN 290

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ++  T++I I   CK G + E+   F  ++ L    DI  Y+ +IDGLCK GRL+ A
Sbjct: 291 GMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDA 350

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F  +    L  +++T++ +IHG    G+ +KA +LF +M +  + P+V  F  +I  
Sbjct: 351 MSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDR 410

Query: 181 FI---RINEPSKVIELLHKMKEK 200
                ++ E  K+ +L+ +   K
Sbjct: 411 LFKEGKVTEAQKLFDLMPRAGAK 433



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 95/185 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I  YCK   ++ A   + +M   G  PD+V + T+  GL +I +++ A   F +M  D
Sbjct: 301 IEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDD 360

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  T+T  I G    G   ++ ELF  +       D+  ++ +ID L K G++  A
Sbjct: 361 GLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEA 420

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +PR     +VV+Y+ MIHG +  G++ +   L  DM    + P  +TF TL+ G
Sbjct: 421 QKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG 480

Query: 181 FIRIN 185
            + + 
Sbjct: 481 MVSMG 485



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 38/234 (16%)

Query: 24  SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
           +K + PD+     L     +   +   F    ++ + G+ AD   +T  +  LC      
Sbjct: 6   AKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTS 65

Query: 84  ESVEL-FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV--LVADVVTYS 140
           +++ +  R +  L C  D+ +YS L+ GLC   + E A EL H +         DVV+YS
Sbjct: 66  DAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYS 125

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT--------------------------- 173
            +IHG + +G + KA+ LF  M ++ + PNV+T                           
Sbjct: 126 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 185

Query: 174 --------FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                   + +LIHG++   + ++ + +L +M      P+    ++++D L K+
Sbjct: 186 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKS 239



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 3/209 (1%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+   C  K    A+N+    M   G  PDV  ++TL  GL    + E A +L   M  D
Sbjct: 54  LLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAED 113

Query: 61  G--VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G     D  +Y+  I G  K G + ++  LF  +       ++   + +IDGLCK   ++
Sbjct: 114 GDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD 173

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +    ++ +  TY+ +IHG  + GQ  +A  +  +M  +   PNV+T+  LI
Sbjct: 174 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLI 233

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDAS 207
               +    ++  E+ + M +    PDA+
Sbjct: 234 DCLCKSGFHAEAREIFNSMIQSGPKPDAT 262



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+    + E A  L+ EM+ +GI PDV I   +   LF+  +V  A KLFD M R G
Sbjct: 372 LIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAG 431

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------------FRTLR----ILKCELDIQ 102
              +  +Y   I G    G + E ++L               F TL      +  + D+ 
Sbjct: 432 AKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVD 491

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
               LID  C+ GR+E  L LF  +       D +T +I
Sbjct: 492 TCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENI 530


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  +   F+L   M   
Sbjct: 145 ILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLAS 204

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 205 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLA 264

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    +  + IT+ TLI G
Sbjct: 265 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDG 324

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 325 CCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 369



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 101/179 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 251 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 310

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 311 LKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 370

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  DM+ N  AP+V+T+  L++G
Sbjct: 371 KMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  ++     L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 181 LMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 240

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 241 LXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 300

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 301 DLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGL 360

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        ++L +M    + PD    +++++   K
Sbjct: 361 CQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCK 397



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 215 VLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 274

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 275 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAA 334

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 335 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINE 394

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL  M+     P     +++++
Sbjct: 395 FCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMN 428



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           + I +   CK+G I  +  +F  +        + +Y+ L++G  + G L     L  ++ 
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +  DV TYS++I+GL  + +MD A++LF +M    + PN +TF TLI G  +     
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 189 KVIELLHKMKEKNVMPD 205
             +E+  +M  ++++PD
Sbjct: 263 LAMEIYKQMLSQSLLPD 279



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 59/116 (50%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+   CK G + IA  +F ++ +  L   VV+Y+ +++G    G +++   L   M 
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++     EL  +M  K + P+    + ++D   KN
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKN 258


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK  +++ AL L   M   G  PD V HN L  GL    +V +  ++   +QRD
Sbjct: 239 VVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRD 298

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV   +  TYT  I G CK G + +++ ++  +  +    ++  Y+ LI+G  K+G +  
Sbjct: 299 GVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGS 358

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ ++  +     + DVVT+S +I G    GQ+D A  ++ +M +  + PN  TF  +IH
Sbjct: 359 AVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIH 418

Query: 180 GFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKN 219
            F + N   + +  L KM  + ++ P A I + V+D+L K 
Sbjct: 419 TFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKG 459



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 120/227 (52%), Gaps = 2/227 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L++ +  +  ++ A+ L+   +  G+  PDV   N +  G+ ++  V++A +L + M   
Sbjct: 204 LMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEF 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G + DT T+ I ++GLC+   + +  E+ R L R   C  ++  Y+ +I G CK+GR+E 
Sbjct: 264 GCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMED 323

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ +++ +       +VVTY+++I+G    G M  A  ++  M      P+V+TF +LI 
Sbjct: 324 AMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLID 383

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           G+ R  +    +++  +M + ++ P+A    I++    K   S  +L
Sbjct: 384 GYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEAL 430



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 122/256 (47%), Gaps = 37/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL+NG C+ KE+     +   +   G+  P+VV + ++  G  +  ++E A  ++++M  
Sbjct: 274 ILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVA 333

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G + +  TY + I+G  K G +  +V +++ + + +C  D+  +S LIDG C+ G+L+ 
Sbjct: 334 VGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDD 393

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHG----------------------------LYND-- 149
           A++++  + +  +  +  T+ I+IH                             +YN   
Sbjct: 394 AMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVI 453

Query: 150 ------GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
                 G++D+A+ + ++MEE    P+  T+  LI G       ++ +   HKM E    
Sbjct: 454 DVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCS 513

Query: 204 PDASIVSIVVDLLAKN 219
           PD+ +V+  +  L K+
Sbjct: 514 PDSIVVNSFISCLLKS 529



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 3/196 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGY K   +  A+ +Y +M+ +   PDVV  ++L  G     Q++ A K++ EM + 
Sbjct: 345 VLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQY 404

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLE 118
            +  +  T+ I I   CK     E++   + +  ++ ++  QA  Y+ +ID LCK G+++
Sbjct: 405 HIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMN-MRTDIAPQAFIYNPVIDVLCKGGKVD 463

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +       D  TY+I+I G    G++ +A   F  M E   +P+ I   + I
Sbjct: 464 EANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFI 523

Query: 179 HGFIRINEPSKVIELL 194
              ++   P +V  ++
Sbjct: 524 SCLLKSGMPGEVDHIM 539



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 50  AFKLFDEMQ-RDGVAADTRTYTIFIDGLCKNGYIVESVELFRT-LRILKCELDIQAYSCL 107
           A +LFD+M  + G   + R +  F+ G C    ++++     +      C ++  AY+ L
Sbjct: 146 ALQLFDQMTDQSGYFPNAR-FLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKL 204

Query: 108 IDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +D     GR++ A+ LF   +  GV   DV +++++I G+   G + KA +L   M+E  
Sbjct: 205 MDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFG 264

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
            +P+ +T   L++G  R  E SK  E+L +++   V MP+    + V+    K
Sbjct: 265 CSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCK 317


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK   ++ A+   + M S G +P+V+ HN +   +    +   A KL  EM R 
Sbjct: 56  VLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRK 115

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+ G +  ++++   +    C  +  +Y+ L+ G CK  +++ A
Sbjct: 116 GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRA 175

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++    +       D+VTY+ M+  L  DG++D A +L   +     +P +IT+ T+I G
Sbjct: 176 IQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDG 235

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +  + +ELLH+M+ K + PD    S ++  L++
Sbjct: 236 LSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSR 273



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 117/226 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M + G  P+ + +N L  G  +  +++RA +  + M   
Sbjct: 126 ILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSR 185

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G +  +VEL   L    C   +  Y+ +IDGL K G+ + A
Sbjct: 186 GCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQA 245

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL H +    L  DV+TYS +I GL  +G++++A   F D+E   V PN  T+ +++ G
Sbjct: 246 VELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFG 305

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +  +  + I+ L  M  K   P     +I+++ +A   ++  +L
Sbjct: 306 LCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEAL 351



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 113/214 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK K+++ A+     M+S+G  PD+V +NT+   L +  +V+ A +L +++   G
Sbjct: 162 LLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKG 221

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G   ++VEL   +R    + D+  YS LI GL + G++E A+
Sbjct: 222 CSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAI 281

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH +    +  +  TY+ ++ GL    Q D+A D    M      P  +++  LI G 
Sbjct: 282 KFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGI 341

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
                  + +ELL+++  + V+  +S   +VV L
Sbjct: 342 ANEGLAKEALELLNELCSRGVVKKSSAEQVVVRL 375



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           L K   PDV+ +  L         V +A KL DEM   G   D  TY + ++G+CK G +
Sbjct: 8   LEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRL 67

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
            E+++   ++     + ++  ++ ++  +C +GR   A +L   + R      VVT++I+
Sbjct: 68  DEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNIL 127

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I+ L   G + +A D+   M  +   PN +++  L+HGF +  +  + I+ L  M  +  
Sbjct: 128 INFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 203 MPDASIVSIVVDLLAKN 219
            PD    + ++  L K+
Sbjct: 188 YPDIVTYNTMLTALCKD 204


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKNK IE A  ++ EM  +GI  +VV +NTL  GL +  +VE A +L D+M  +G
Sbjct: 497 LIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEG 556

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +   C+ G I ++ ++ +T+    CE D   Y  LI GL K+GR+E+A 
Sbjct: 557 LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELAS 616

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++    +V    TY+ +I  L+ + +  +A  LF +M E    P+ +T+  +  G 
Sbjct: 617 RLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGL 676

Query: 182 IRINEP-SKVIELLHKMKEKNVMPDAS 207
                P  + ++ L +M +K  +PD S
Sbjct: 677 CSGGGPIGEAVDFLVEMTDKGFLPDFS 703



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  ++E A  L   + SKGI PDV   N+L  GL   +    A +LF+EM+  G
Sbjct: 392 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG 451

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ID LC  G + E++ L + +    C  ++  Y+ LIDG CK+ R+E A 
Sbjct: 452 CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAE 511

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  +VVTY+ +I GL  + ++++A  L   M    + P+  T+ +L+  F
Sbjct: 512 EIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYF 571

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  K  +++  M      PD+     ++  L+K
Sbjct: 572 CRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSK 608



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C+   ++ AL +   ML +G  PD+  +N+L  GL ++ +VE A ++ ++M    
Sbjct: 322 LVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRD 381

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +T TY   I  LCK   + E+ EL R L       D+  ++ LI GLC +    +A+
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       D  TY+++I  L + G++++A  L  +ME +  + NV+T+ TLI GF
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     +  E+  +M+ + +  +    + ++D L KN
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKN 539



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK  E+E A+ + ++M+ +   P+ V +NTL   L + +QVE A +L   +   G
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 416

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   I GLC       ++ELF  ++   C  D   Y+ LID LC  GRLE AL
Sbjct: 417 ILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEAL 476

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       +VVTY+ +I G   + ++++A ++F +ME   ++ NV+T+ TLI G 
Sbjct: 477 SLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGL 536

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L+ +M  + + PD
Sbjct: 537 CKNRRVEEAAQLMDQMLMEGLKPD 560



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 98/202 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C       A+ L+ EM +KG  PD   +N L   L    ++E A  L  EM+  G
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   IDG CKN  I E+ E+F  + +     ++  Y+ LIDGLCK+ R+E A 
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAA 546

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ ++      G + KA D+   M  N   P+ +T+GTLI G 
Sbjct: 547 QLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGL 606

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +         LL  ++ K ++
Sbjct: 607 SKAGRVELASRLLRTVQLKGMV 628



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 107/212 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C    +E AL+L  EM S G   +VV +NTL  G  +  ++E A ++FDEM+  
Sbjct: 461 MLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQ 520

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY   IDGLCKN  + E+ +L   + +   + D   Y+ L+   C++G ++ A
Sbjct: 521 GISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKA 580

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++  ++       D VTY  +I GL   G+++ A  L   ++   +     T+  +I  
Sbjct: 581 ADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKA 640

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             R    S+ + L  +M EK   PDA    +V
Sbjct: 641 LFREKRTSEAVRLFREMMEKGDPPDAVTYKVV 672



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 108/215 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   + GAL +  +M++ G     V  N L  G  +  ++E      DEM  +G
Sbjct: 252 LMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEG 311

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   ++GLC+ G++  ++E+   +     + DI  Y+ LI GLCK G +E A+
Sbjct: 312 FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAV 371

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ + +       + VTY+ +I  L  + Q+++A +L   +    + P+V TF +LI G 
Sbjct: 372 EILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 431

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
              N     +EL  +MK K   PD    ++++D L
Sbjct: 432 CLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 97/199 (48%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           S M+S+GIKPDV   N L   L   HQ+  A  + +EM   G++ D +T+T  + G  + 
Sbjct: 200 SRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEE 259

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           G +  ++ +   +    C       + L+ G CK GR+E  L     +       D  T+
Sbjct: 260 GNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTF 319

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           + +++GL   G +  A ++   M +    P++ T+ +LI G  ++ E  + +E+L++M  
Sbjct: 320 NSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMIL 379

Query: 200 KNVMPDASIVSIVVDLLAK 218
           ++  P+    + ++  L K
Sbjct: 380 RDFSPNTVTYNTLISTLCK 398



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI  Y K +  + A+ +   M  + G+K D   +N L   L + ++++    +   M  
Sbjct: 145 ILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVS 204

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D  T+ I I  LC+   I  ++ +   +       D + ++ L+ G  + G +  
Sbjct: 205 RGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNG 264

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL +   +      +  VT ++++HG   +G++++      +M      P+  TF +L++
Sbjct: 265 ALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVN 324

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G  RI      +E+L  M ++   PD
Sbjct: 325 GLCRIGHVKHALEILDVMLQEGFDPD 350


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 115/205 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 141 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     E   +M ++N+  D
Sbjct: 321 CCKEGDLDSAFEHRKRMIQENIRLD 345



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 94/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ L  GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  L  G 
Sbjct: 297 HLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PDA   +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 394



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +  GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 FEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +  K  +LL +M+    +P
Sbjct: 391 FCKKGDVWKGSKLLKEMQRDGHVP 414



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 127 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 186

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 187 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 246

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 247 LIDGHCKN 254



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 64  SDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 124 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 218


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 125/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK GR+++A
Sbjct: 207 GVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +A+DL  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 98/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   ++ A+ +Y  MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ N   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PD   ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAN 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 400



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K   LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMN 430



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  D  TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPD 281



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCK 224


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CKN     A N  ++M+ +G  PD+V ++    GL +I++++RA +LF ++   
Sbjct: 565 LLVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTR 624

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  ++ I I G CK G + E+      +R+        +Y+ LI+  CK+G ++ A
Sbjct: 625 GCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKA 684

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +     +        +++Y+ +I+G  N G+ D A  L+ +M+E   +PN IT+  ++HG
Sbjct: 685 ILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHG 744

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEISL 223
             +  +P + +   H M+EK + PD+ +   ++D  ++K+  S+
Sbjct: 745 LCKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISKHNFSM 788



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNK---EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           I+I+G  K     + + AL+L+ +M+  G + D +++N L   L +  +++ ++KL  +M
Sbjct: 457 IVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKESYKLLRDM 516

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           ++  +     TY      LC+    V ++EL R +R    E  I+  + L+  LCK+GR 
Sbjct: 517 EQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNGRA 576

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A      +     + D+V+YS  + GL    ++D+A +LF D+      P+V++   L
Sbjct: 577 IEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNIL 636

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I G+ +  + ++    LHKM+   ++P A   +++++   KN
Sbjct: 637 IKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKN 678



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 35/207 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYCK  ++  A N   +M   G+ P  V +N L     +   +++A     +M  +
Sbjct: 635 ILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEE 694

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  +YT  I+G C +G   ++  L+  ++   C  +   Y  ++ GLCK G+ + A
Sbjct: 695 NKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEA 754

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  +HS                                   MEE  + P+      LI  
Sbjct: 755 LVYYHS-----------------------------------MEEKEMKPDSYVSVALIDA 779

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
           FI  +  S    +L +  EK  +PD +
Sbjct: 780 FISKHNFSMAFNILKETIEKGNIPDPT 806



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
            YC   + + AL ++++M  +G   D  + + L +   +  +V+R  +  D M+   +  
Sbjct: 237 AYCNAGKFDKALIVFNDMHERGW-VDGYVFSILALAFSKWGEVDRTMQFIDRMEDQNLML 295

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           + +T+   I G  K      +++L   +  L   LD+  Y  LI GLCK    E A+ LF
Sbjct: 296 NGKTFYALIHGFVKESREDMALKLLEKMLKLGFTLDVSIYDVLIGGLCKKRAFEKAMALF 355

Query: 125 HSLPRGVLVADV 136
             +    +  DV
Sbjct: 356 FKMKMLGITPDV 367



 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 4/174 (2%)

Query: 47  VERAFKLFDEMQR-DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           VE A  LFD+++  D    +  +Y   ++ L K   I         ++    E+D    +
Sbjct: 173 VEEANYLFDQVRSMDLCIPNNYSYNCLLEILSKTNSIDSIENRLMEMKDFGWEVDKYTLT 232

Query: 106 CLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
            ++   C +G+ + AL +F+ +  RG +  D   +SI+       G++D+       ME+
Sbjct: 233 PVLMAYCNAGKFDKALIVFNDMHERGWV--DGYVFSILALAFSKWGEVDRTMQFIDRMED 290

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  N  TF  LIHGF++ +     ++LL KM +     D SI  +++  L K
Sbjct: 291 QNLMLNGKTFYALIHGFVKESREDMALKLLEKMLKLGFTLDVSIYDVLIGGLCK 344



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 1/171 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   I+   N   EM   G + D      + +      + ++A  +F++M   G   D  
Sbjct: 205 KTNSIDSIENRLMEMKDFGWEVDKYTLTPVLMAYCNAGKFDKALIVFNDMHERG-WVDGY 263

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            ++I      K G +  +++    +      L+ + +  LI G  K  R ++AL+L   +
Sbjct: 264 VFSILALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALIHGFVKESREDMALKLLEKM 323

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            +     DV  Y ++I GL      +KA  LF  M+   + P+V     L+
Sbjct: 324 LKLGFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILAKLV 374



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 1/185 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+   +N L   L + + ++       EM+  G   D  T T  +   C  G   +++ +
Sbjct: 191 PNNYSYNCLLEILSKTNSIDSIENRLMEMKDFGWEVDKYTLTPVLMAYCNAGKFDKALIV 250

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  +   +  +D   +S L     K G ++  ++    +    L+ +  T+  +IHG   
Sbjct: 251 FNDMH-ERGWVDGYVFSILALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALIHGFVK 309

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           + + D A  L   M +     +V  +  LI G  +     K + L  KMK   + PD  I
Sbjct: 310 ESREDMALKLLEKMLKLGFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQI 369

Query: 209 VSIVV 213
           ++ +V
Sbjct: 370 LAKLV 374


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C+   +  AL +  EM+  G  PDVV +NTL  GL +  ++  A  L +EM+  
Sbjct: 21  MVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 80

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+T  I G C  G + ++++LF T+   +   DI  Y+ LIDG+C+ G L+ A
Sbjct: 81  GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 140

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L+  +    +  + VTYSI+I      GQ++ A     +M    + PN++T+ ++I G
Sbjct: 141 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 200

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R    SK  + L KM    V PD
Sbjct: 201 YCRSGNVSKGQKFLQKMMVNKVSPD 225



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 115/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK + +  A  L +EM  +G+ PD+    TL  G     ++++A +LFD M    
Sbjct: 57  LLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR 116

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   IDG+C+ G + ++ +L+  +   +   +   YS LID  C+ G++E A 
Sbjct: 117 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAF 176

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    ++ +++TY+ +I G    G + K       M  N V+P++IT+ TLIHG+
Sbjct: 177 GFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 236

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           I+ ++     +LL+ M+++ V PD    +++++
Sbjct: 237 IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLIN 269



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 93/185 (50%)

Query: 21  EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
           EM   G+ PD VI+  +  G      +  A ++ DEM   G   D  TY   ++GLCK  
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
            ++++  L   +R      D+  ++ LI G C  G+L+ AL+LF ++    L  D+VTY+
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 125

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I G+   G +DKA+DL+ DM    + PN +T+  LI       +       L +M  K
Sbjct: 126 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 185

Query: 201 NVMPD 205
            ++P+
Sbjct: 186 GILPN 190



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+  +++ A +L+ +M S+ I P+ V ++ L     E  QVE AF   DEM   G
Sbjct: 127 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 186

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I G C++G + +  +  + + + K   D+  Y+ LI G  K  ++  A 
Sbjct: 187 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 246

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + + +  +  DVVTY+++I+G    G + +A  +F  M    + P+  T+ ++I+G 
Sbjct: 247 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 306

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +      +  +L  +M ++   PD
Sbjct: 307 VTAGNSKEAFQLHDEMLQRGFAPD 330



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%)

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM+  G+  D   YT+ I G C+ G + +++ +   +    C  D+  Y+ L++GLCK  
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           RL  A  L + +    +  D+ T++ +IHG   +G++DKA  LF  M    + P+++T+ 
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 125

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           TLI G  R  +  K  +L   M  + + P+    SI++D
Sbjct: 126 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 164



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+  ++E A     EM++KGI P+++ +N++  G      V +  K   +M  +
Sbjct: 161 ILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN 220

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ D  TY   I G  K   + ++ +L   +   K + D+  Y+ LI+G    G ++ A
Sbjct: 221 KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 280

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             +F  +    +  D  TY  MI+G    G   +A  L  +M +   AP+
Sbjct: 281 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%)

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
            R +R      D   Y+ +I G C++G +  AL +   +     + DVVTY+ +++GL  
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           + ++  A  L  +M E  V P++ TF TLIHG+    +  K ++L   M  + + PD   
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 209 VSIVVDLLAK 218
            + ++D + +
Sbjct: 124 YNTLIDGMCR 133



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+  +  ++ A  ++ +M +KGI+PD   + ++  G       + AF+L DEM + 
Sbjct: 266 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 325

Query: 61  GVAADTR 67
           G A D +
Sbjct: 326 GFAPDDK 332


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 111/203 (54%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G+CK  +I  A   + EM S+ I PDV+ +  +  G  +I  +  A KLF EM   G
Sbjct: 800  LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 859

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D+ T+T  I+G CK G++ ++  +   +    C  ++  Y+ LIDGLCK G L+ A 
Sbjct: 860  LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 919

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            EL H + +  L  ++ TY+ +++GL   G +++A  L  + E   +  + +T+ TL+  +
Sbjct: 920  ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 979

Query: 182  IRINEPSKVIELLHKMKEKNVMP 204
             +  E  K  E+L +M  K + P
Sbjct: 980  CKSGEMDKAQEILKEMLGKGLQP 1002



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 116/212 (54%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G+C+  ++  A  L+ EM  KG++PD V    L  G  +   ++ AF++ + M + G
Sbjct: 835  IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 894

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             + +  TYT  IDGLCK G +  + EL   +  +  + +I  Y+ +++GLCKSG +E A+
Sbjct: 895  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L        L AD VTY+ ++      G+MDKA ++  +M    + P ++TF  L++GF
Sbjct: 955  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 1014

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                      +LL+ M  K + P+A+  + +V
Sbjct: 1015 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 1046



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGYC+  E++    L   M  KG+KP+  I+ ++   L  I ++  A + F EM R G
Sbjct: 730 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 789

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT  YT  IDG CK G I  + + F  +       D+  Y+ +I G C+ G +  A 
Sbjct: 790 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 849

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH +    L  D VT++ +I+G    G M  A  +   M +   +PNV+T+ TLI G 
Sbjct: 850 KLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 909

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +     ELLH+M +  + P+    + +V+ L K+
Sbjct: 910 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 947



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 113/213 (53%), Gaps = 3/213 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  E E A   +SEM+ +GI PD V++ TL  G  +   +  A K F EM    +  D 
Sbjct: 773 CKLAEAEEA---FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 829

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I G C+ G +VE+ +LF  +     E D   ++ LI+G CK+G ++ A  + + 
Sbjct: 830 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 889

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +     +VVTY+ +I GL  +G +D A++L  +M +  + PN+ T+ ++++G  +   
Sbjct: 890 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 949

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + ++L+ + +   +  D    + ++D   K+
Sbjct: 950 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 982



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LINGYCK   ++ A  +++ M+  G  P+VV + TL  GL +   ++ A +L  EM + G
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  +  TY   ++GLCK+G I E+V+L           D   Y+ L+D  CKSG ++ A 
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            E+   +    L   +VT++++++G    G ++    L   M    +APN  TF +L+  +
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 182  IRINEPSKVIELLHKMKEKNVMPDA 206
               N       +   M  + V PD 
Sbjct: 1050 CIRNNLKAATAIYKDMCSRGVGPDG 1074



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G CK  +++ A  L  EM   G++P++  +N++  GL +   +E A KL  E +  G
Sbjct: 905  LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 964

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + ADT TYT  +D  CK+G + ++ E+ + +     +  I  ++ L++G C  G LE   
Sbjct: 965  LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1024

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L + +    +  +  T++ ++        +  A  ++ DM    V P+  T+  L+ G 
Sbjct: 1025 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 1084

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +     +   L  +MK K      S  S+++    K +  L +   F    R+
Sbjct: 1085 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 1138



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 94/192 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ ++ E    G+  +V  +N +   + ++ +++ A  L   M+  G   D  +Y+  ++
Sbjct: 673 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 732

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+ G + +  +L   ++    + +   Y  +I  LC+  +L  A E F  + R  ++ 
Sbjct: 733 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 792

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D V Y+ +I G    G +  A   F +M    + P+V+T+  +I GF +I +  +  +L 
Sbjct: 793 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 852

Query: 195 HKMKEKNVMPDA 206
           H+M  K + PD+
Sbjct: 853 HEMFCKGLEPDS 864



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 99/219 (45%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++NG CK+  IE A+ L  E  + G+  D V + TL     +  ++++A ++  EM   G
Sbjct: 940  IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 999

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +     T+ + ++G C +G + +  +L   +       +   ++ L+   C    L+ A 
Sbjct: 1000 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAAT 1059

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             ++  +    +  D  TY  ++ G      M +A  LF +M+    + +V T+  LI GF
Sbjct: 1060 AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 1119

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++  +  +  E+  +M+ + +  D  I     D   K +
Sbjct: 1120 LKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGK 1158



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG-RLEIAL 121
            +D R + +F   L   G + E+  +F  +      L + + +  +  L K   +   A+
Sbjct: 615 GSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F   P   +  +V +Y+I+IH +   G++ +AH L L ME     P+VI++ T+++G+
Sbjct: 675 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E  KV +L+  MK K + P++ I   ++ LL +
Sbjct: 735 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 771



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +L+NG+C +  +E    L + ML+KGI P+    N+L       + ++ A  ++ +M   
Sbjct: 1009 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 1068

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            GV  D +TY   + G CK   + E+  LF+ ++     + +  YS LI G  K  +   A
Sbjct: 1069 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 1128

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
             E+F  + R  L AD   +       Y   + D   D   ++ EN
Sbjct: 1129 REVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 1173



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY-IVESVEL 88
           D  + +  F  L +   +  A ++F++M   G+     +  +++  L K+ Y    ++ +
Sbjct: 617 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIV 676

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           FR    +    ++ +Y+ +I  +C+ GR++ A  L   +       DV++YS +++G   
Sbjct: 677 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR 736

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++DK   L   M+   + PN   +G++I    RI + ++  E   +M  + ++PD  +
Sbjct: 737 FGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVV 796

Query: 209 VSIVVDLLAK-NEISLNSLPSFTVHER 234
            + ++D   K  +I   S   + +H R
Sbjct: 797 YTTLIDGFCKRGDIRAASKFFYEMHSR 823


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   E   AL L++E L KGIKP+V+++NTL  GL     +  A +L  EM   G
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + +T+ I ++GLCK G + ++  L + +       DI  ++ LI G     ++E AL
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  DV TY+ +++GL    + +   + +  M E   APN+ TF  L+   
Sbjct: 482 EILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
            R ++  K + LL +MK K+V PDA     ++D   KN   L+   ++T+  + EEV
Sbjct: 542 CRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG-DLDG--AYTLFRKMEEV 595



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK   +  A  L   M+SKG  PD+   N L  G     ++E A ++ D M  +
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDN 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   ++GLCK     + +E ++T+    C  ++  ++ L++ LC+  +L+ A
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKA 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE-NAVAPNVITFGTLIH 179
           L L   +    +  D VT+  +I G   +G +D A+ LF  MEE   V+ +  T+  +IH
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIH 610

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F      +   +L  +M ++ + PD     ++VD   K
Sbjct: 611 AFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  + E  +  Y  M+ KG  P++   N L   L   H++++A  L +EM+   
Sbjct: 502 LLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKS 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           V  D  T+   IDG CKNG +  +  LFR +  +         Y+ +I    +   + +A
Sbjct: 562 VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMA 621

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    L  D  TY +M+ G    G +D  +   L+M EN   P++ T G +I+ 
Sbjct: 622 EKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINC 681

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
               +   +   ++H+M +K ++P+A
Sbjct: 682 LCVEDRVYEAAGIIHRMVQKGLVPEA 707



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY    ++E AL +   M+  G+ PDV  +N+L  GL +  + E   + +  M   
Sbjct: 466 ILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEK 525

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A +  T+ I ++ LC+   + +++ L   ++      D   +  LIDG CK+G L+ A
Sbjct: 526 GCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGA 585

Query: 121 LELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             LF  +    +V+    TY+I+IH       +  A  LF +M +  + P+  T+  ++ 
Sbjct: 586 YTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVD 645

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           GF +        + L +M E   +P  + +  V++ L 
Sbjct: 646 GFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLC 683



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CKN + + A     +++++G++PD   +NTL  G  +   V+ A ++      +G
Sbjct: 292 LIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNG 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   IDGLC  G    ++ LF        + ++  Y+ LI GL   G +  A 
Sbjct: 352 FVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAA 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L+ +V T++I+++GL   G +  A  L   M      P++ TF  LIHG+
Sbjct: 412 QLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +    +E+L  M +  V PD    + +++ L K
Sbjct: 472 STQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCK 508



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 89/183 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  +C+      AL L + M S+G + +VV + T+  G +E +  +  ++LF +M   
Sbjct: 151 IRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLAS 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+    T+   +  LCK G + E  +L   +       ++  Y+  I GLC+ G L+ A
Sbjct: 211 GVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAA 270

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   L       DVVTY+ +I+GL  + +  +A      +    + P+  T+ TLI G
Sbjct: 271 VRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAG 330

Query: 181 FIR 183
           + +
Sbjct: 331 YCK 333



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+ +    +    L+ +ML+ G+   +   N L   L +   V+   KL D++ + G
Sbjct: 187 VVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRG 246

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           V  +  TY  FI GLC+ G +  +V +   L     + D+  Y+ LI GLCK+ + + A 
Sbjct: 247 VLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAE 306

Query: 121 ----------LE----LFHSLPRGV--------------------LVADVVTYSIMIHGL 146
                     LE     +++L  G                      V D  TY  +I GL
Sbjct: 307 VYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGL 366

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            ++G+ ++A  LF +     + PNVI + TLI G        +  +L  +M EK ++P+ 
Sbjct: 367 CHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEV 426

Query: 207 SIVSIVVDLLAK 218
              +I+V+ L K
Sbjct: 427 QTFNILVNGLCK 438



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 98/217 (45%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           +  Y +  +++ A+N++  M     +P V  +N +   L +    ++A K++  M+  G+
Sbjct: 83  MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 142

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  ++TI +   C+      ++ L   +    CE+++ AY  ++ G  +    +   E
Sbjct: 143 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 202

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF  +    +   + T++ ++H L   G + +   L   + +  V PN+ T+   I G  
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLC 262

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  E    + ++ ++ ++   PD    + ++  L KN
Sbjct: 263 QKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKN 299



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 2/193 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  +Y  M  +GI PDV              +   A +L + M   G   +   Y   + 
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLV 133
           G  +  +  E  ELF  +      L +  ++ L+  LCK G ++   +L    + RGVL 
Sbjct: 190 GFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVL- 248

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            ++ TY+  I GL   G++D A  +   + +    P+V+T+  LI+G  + ++  +    
Sbjct: 249 PNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVY 308

Query: 194 LHKMKEKNVMPDA 206
           L K+  + + PD+
Sbjct: 309 LGKLVNEGLEPDS 321


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 109/205 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK+  IE AL L+ EM  KG KPD+   N+L  GL + H++E A  L+ +M  +G
Sbjct: 453 LICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEG 512

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TY   +        I ++ +L   +    C LD   Y+ LI  LCK+G +E  L
Sbjct: 513 VIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGL 572

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +   +++ +I+I GL   G+++ A     DM    + P+++T+ +LI+G 
Sbjct: 573 GLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGL 632

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            ++    +   L +K++ + + PDA
Sbjct: 633 CKMGHVQEASNLFNKLQSEGIRPDA 657



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 5/213 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQRD 60
           L++G C+  +++ A      +L+K   P+ V++NTL  G     + E A  L ++ M   
Sbjct: 316 LMHGLCRMGQVDEA----RALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIA 371

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+ I IDGL K GY+V ++EL   +   + E ++  Y+ LI+G CK GRLE A
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEA 431

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ +S+    L  + V Y+ +I  L  DG +++A  LF +M      P++ TF +LI+G
Sbjct: 432 AEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             + ++  + + L H M  + V+ +    + +V
Sbjct: 492 LCKNHKMEEALSLYHDMFLEGVIANTVTYNTLV 524



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+GY  +   E A +L Y+ M+  G +PD    N +  GL +   +  A +L +EM   
Sbjct: 347 LISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAK 406

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TYTI I+G CK G + E+ E+  ++      L+   Y+CLI  LCK G +E A
Sbjct: 407 RFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEA 466

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  +       D+ T++ +I+GL  + +M++A  L+ DM    V  N +T+ TL+H 
Sbjct: 467 LQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHA 526

Query: 181 FIRINEPSKVIELLHKM 197
           F+  +   +  +L+ +M
Sbjct: 527 FLMRDSIQQAFKLVDEM 543



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C       A N++ +MLS+G+ P V     +   L  + +V+ A  L  +M + 
Sbjct: 179 ILVDGDCPRV----APNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKH 234

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++  Y   I  LC+N  + E+++L   + ++ CE D+Q ++ +I GLC++GR+  A
Sbjct: 235 GCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEA 294

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       D +TY  ++HGL   GQ+D+A  L   +      PN + + TLI G
Sbjct: 295 AKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISG 350

Query: 181 FIRINEPSKVIELLH-KMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           ++      +  +LL+  M      PDA   +I++D L K    +++L
Sbjct: 351 YVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSAL 397



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G  K   +  AL L +EM++K  +P+V+ +  L  G  +  ++E A ++ + M   
Sbjct: 382 IMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK 441

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +T  Y   I  LCK+G I E+++LF  +    C+ DI  ++ LI+GLCK+ ++E A
Sbjct: 442 GLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEA 501

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L+H +    ++A+ VTY+ ++H       + +A  L  +M       + IT+  LI  
Sbjct: 502 LSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKA 561

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     K + L  +M  K + P     +I++  L +
Sbjct: 562 LCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCR 599



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 35/217 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CKN ++E AL+LY +M  +G+  + V +NTL         +++AFKL DEM   G
Sbjct: 488 LINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRG 547

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-------RILKCEL--------------- 99
              D  TY   I  LCK G + + + LF  +        I+ C +               
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDAL 607

Query: 100 -------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        DI  Y+ LI+GLCK G ++ A  LF+ L    +  D +TY+ +I   
Sbjct: 608 KFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRH 667

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
            ++G  + A  L     ++   PN +T+  LI+  ++
Sbjct: 668 CHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 32/250 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C+N  +  AL L  +M     +PDV   N +  GL    ++  A KL D M   G
Sbjct: 246 LIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRG 305

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL--------------------------------F 89
            + D  TY   + GLC+ G + E+  L                                +
Sbjct: 306 FSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLY 365

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             + I   E D   ++ +IDGL K G L  ALEL + +       +V+TY+I+I+G    
Sbjct: 366 NNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQ 425

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++++A ++   M    ++ N + +  LI    +     + ++L  +M  K   PD    
Sbjct: 426 GRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTF 485

Query: 210 SIVVDLLAKN 219
           + +++ L KN
Sbjct: 486 NSLINGLCKN 495



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C+  ++  AL    +M+ +G+ PD+V +N+L  GL ++  V+ A  LF+++Q +
Sbjct: 592 ILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSE 651

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D  TY   I   C  G
Sbjct: 652 GIRPDAITYNTLISRHCHEG 671



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 3/169 (1%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDG 110
           KL  +M+ +G+      + + +    K G   ++  L   +  +  C+   ++Y+ ++D 
Sbjct: 120 KLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDI 179

Query: 111 LCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           L       +A  +F+  L RGV    V T+ +++  L    ++D A  L  DM ++   P
Sbjct: 180 LVDGDCPRVAPNVFYDMLSRGV-SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVP 238

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           N + + TLIH     N  S+ ++LL  M      PD    + V+  L +
Sbjct: 239 NSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCR 287


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN ++E    L  EM   G++ DV +++ L  G      +ER  +LF+EM R  
Sbjct: 205 LIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKN 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  ++ LCK     E+ ++  T+   K   D+ AY+ L DGL K+GR   A+
Sbjct: 265 VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAI 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +     + VTY+ +I+GL  +G++D A  +   M +    P+V+T+ TL+ G 
Sbjct: 325 KVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGL 384

Query: 182 IRINEPSKVIELLHKM--KEKNVMPDASIVSIVVDLLAKNE 220
             + +  + ++LL+ +  KE ++ PD    ++V+  L K  
Sbjct: 385 CGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQR 425



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +   ++   A  +   ++ +G   +V   N L  G  +     +A  LF  M+R+ 
Sbjct: 100 LIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNC 159

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I+GLCK   +VE+ ELF+ ++  +C+ +   +S LIDG CK+G +E   
Sbjct: 160 LIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGF 219

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  L  DV  YS +I G  + G +++  +LF +M    V PNV+T+  L++  
Sbjct: 220 GLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNAL 279

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  +  ++L  M    V PD    +++ D L+KN
Sbjct: 280 CKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKN 317



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 123/257 (47%), Gaps = 37/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   +IE    L++EML K + P+VV ++ L   L +  + + A ++ D M    
Sbjct: 240 LISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCK 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT+  DGL KNG   +++++   +     E +   Y+ +I+GLCK GR++ AL
Sbjct: 300 VRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDAL 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL----------------------- 158
            +  ++ +     DVVTYS ++ GL   G++D+A DL                       
Sbjct: 360 GILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQ 419

Query: 159 --------------FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                         +  M E     N++T+  LI G++   + +K +EL     +  + P
Sbjct: 420 ELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISP 479

Query: 205 DASIVSIVVDLLAKNEI 221
           +A+  +++++ L K ++
Sbjct: 480 NAATYTVLINGLCKMQM 496



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G+C++ +   A++L+  M    + PD V +NT+  GL +  ++  A +LF EM+  
Sbjct: 134 LLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGG 193

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               ++ T++  IDG CKNG + E   L   +  +  E D+  YS LI G C  G +E  
Sbjct: 194 ECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERG 253

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF+ + R  +  +VVTYS +++ L    +  +A  +   M    V P+V+ +  L  G
Sbjct: 254 KELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADG 313

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    S  I++L  M ++   P+    + +++ L K
Sbjct: 314 LSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCK 351



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 100/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK K +  A  L+ EM     KP+ V  + L  G  +   VE  F L +EM++ G
Sbjct: 170 VINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  I G C  G I    ELF  +       ++  YSCL++ LCK  + + A 
Sbjct: 230 LEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAA 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++  ++    +  DVV Y+++  GL  +G+   A  +   M +    PN +T+  +I+G 
Sbjct: 290 QMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGL 349

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +       + +L  M +K   PD    S +V
Sbjct: 350 CKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 3/235 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY    ++  AL L+ + +  GI P+   +  L  GL ++  +  A  LF++ +  
Sbjct: 451 ILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRAS 510

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G       Y   +  LC+   + ++  LF+ +R    + D+ +++ +IDG  K+G +E A
Sbjct: 511 GTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESA 570

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    LV D +T+SI+I+     GQ+D+A  L+  M      P+ + F +L+ G
Sbjct: 571 KELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKG 630

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN---SLPSFTVH 232
           +    +  KV+ +L +M +K+V+ D+ + S ++  L      ++    LP F+ H
Sbjct: 631 YSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKILPKFSQH 685



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 110/209 (52%), Gaps = 2/209 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L +G  KN     A+ +   M+ +G +P+ V +N +  GL +  +V+ A  + + M + 
Sbjct: 309 VLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKK 368

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRLE 118
           G   D  TY+  + GLC  G I E+V+L   L  +    + D+ A++ +I  LCK  RL 
Sbjct: 369 GKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLR 428

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +++++      +++VTY+I+I G  + G++ KA +L+ D  ++ ++PN  T+  LI
Sbjct: 429 HAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLI 488

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDAS 207
           +G  ++   S    L +K +     P  S
Sbjct: 489 NGLCKMQMLSIAKGLFNKKRASGTRPTVS 517



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 2/215 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           +ING CK   ++ AL +   M  KG KPDVV ++TL  GL  + +++ A  L + +    
Sbjct: 345 IINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKE 404

Query: 61  -GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             +  D   + + I  LCK   +  +  ++ T+       +I  Y+ LIDG   +G+L  
Sbjct: 405 FHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTK 464

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALEL+       +  +  TY+++I+GL     +  A  LF     +   P V  + TL+ 
Sbjct: 465 ALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMA 524

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              R +   +   L  +M+  N  PD    +I++D
Sbjct: 525 SLCRESSVEQARNLFQEMRNANHDPDVVSFNIIID 559



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   K K  +  ++++S+M S  + P     + L        +   AF +   + + G
Sbjct: 65  LIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRG 124

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   + + + G C++G   ++++LF  ++      D  +Y+ +I+GLCK  RL  A 
Sbjct: 125 FHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAK 184

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +  G    + VT+S +I G   +G +++   L  +ME+  +  +V  +  LI GF
Sbjct: 185 ELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGF 244

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               +  +  EL ++M  KNV P+    S +++ L K +
Sbjct: 245 CSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQ 283


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +I G+ +   +  A  L+   ++K   PDV  +N L I L +  Q+E A  LF E ++ 
Sbjct: 271 FIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYN-LLIALCKSKQLEEALTLFQEAEQG 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY+  +D   K G   +++E+F  ++   C  D   Y+ LI  L K G+++ A
Sbjct: 330 GVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEA 389

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   + R  ++ D  TY+I+I  L + G+ +KA+  F  M+    +P+V+T+ TL++G
Sbjct: 390 LELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNG 449

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++    +  +L  +M+    MPD +    ++D LAK
Sbjct: 450 LKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAK 487



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 112/217 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+   K  +++ AL L  +M  KGI PD   +N +   L    + E+A+  F  M+R 
Sbjct: 375 VLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRR 434

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + D  TY   ++GL K     E+ +LF  ++  KC  D+  +  LID L K+GR+E A
Sbjct: 435 KHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDA 494

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE    L +     +   Y+ +I G    GQ+DK ++LF DM E +  P+ IT+  L+ G
Sbjct: 495 LEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLG 554

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           F R    S  +ELL +M  +   P  +  ++++  L+
Sbjct: 555 FSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLS 591



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 1/213 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK      AL ++ EML  G+K DV + NTL      +  + +A +L   M     A D 
Sbjct: 172 CKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDA 231

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY I ++  C+ G + E        R   C L    Y+ +I G  + GRL  A +LF S
Sbjct: 232 FTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFES 291

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
                 V DV TY+++I  L    Q+++A  LF + E+  V  +V T+  L+  F +   
Sbjct: 292 TMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGR 350

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +K +E+ + M++   MPD  + ++++  L K 
Sbjct: 351 AAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQ 383



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK+K++E AL L+ E    G+  DV  ++ L     +  +  +A ++F  MQ+ G
Sbjct: 306 LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAG 365

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT  Y + I  L K G + E++EL   +       D + Y+ +ID L   GR E A 
Sbjct: 366 CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAY 425

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + R     DVVTY+ +++GL    + D+A DLF +M+ N   P++ TFGTLI   
Sbjct: 426 SFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTL 485

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +       +E   ++ +    P++ I + ++    ++
Sbjct: 486 AKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRS 523



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E A + +  M  +   PDVV +NTL  GL ++ + + A  LFDEMQ +    D  T+   
Sbjct: 422 EKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTL 481

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           ID L K G + +++E    L  +    +   Y+ LI G C+SG+++   ELF  +     
Sbjct: 482 IDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSC 541

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             D +TY+I++ G    G    A +L  +M      P + T+  LI       +      
Sbjct: 542 FPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYT 601

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           L  +M  K   PD    S + +L   N+
Sbjct: 602 LFKEMIAKGFNPDMQTYSALPNLSTPNK 629



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  K +  + A +L+ EM +    PD+    TL   L +  ++E A +    + + G
Sbjct: 446 LLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMG 505

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A ++  Y   I G C++G + +  ELF+ +    C  D   Y+ L+ G  + G   +A+
Sbjct: 506 HAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAM 565

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R      + TY+++I  L   GQ++ A+ LF +M      P++ T+  L +  
Sbjct: 566 ELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPN-- 623

Query: 182 IRINEPSKVI 191
             ++ P+K +
Sbjct: 624 --LSTPNKSV 631



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)

Query: 47  VERAFKLFDEMQRDGVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAY 104
           ++ A  + D+M+R      DT  +T  +  LC+   + +++ LF  +R    C  D+ AY
Sbjct: 69  LDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAY 128

Query: 105 SCLIDGLCKSGRLEIALELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           + LI G CK+G  + AL++F  L + G    + V++  ++  L    +   A  +F +M 
Sbjct: 129 NTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEML 188

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              +  +V    TLIH   R+    +   LLH M       DA    I+V+
Sbjct: 189 GAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVN 239



 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+ +      A+ L  EM+ +G  P +  +N L   L    QVE A+ LF EM   
Sbjct: 550 ILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 609

Query: 61  GVAADTRTYT 70
           G   D +TY+
Sbjct: 610 GFNPDMQTYS 619


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 121/220 (55%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--QR 59
           ++ G+ ++  +E A  +Y  M+  G KPD V ++ L  GL +I +++ + K+  EM  + 
Sbjct: 157 VMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRA 216

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  T++  I GLC+ G + +++E+F ++    C+ +   Y+ LI GLC++ ++  
Sbjct: 217 AGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQ 276

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLI 178
           A ELF  + +  +  D V Y+ +I G    G MD+A  L+ +M   A + P ++TF TLI
Sbjct: 277 ARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLI 336

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            GF ++ +  +  EL+ +M  K +  D     I++  L++
Sbjct: 337 DGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSR 376



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 3/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LIN  C   E   AL+L+  M   K ++PD   +NTL  GL      E A KL  EM+ 
Sbjct: 50  VLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRD 109

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             +AA+  TY+  I  L K     ES ++   +    C  D+ A++ ++ G  +S  +E 
Sbjct: 110 KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEK 169

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA--PNVITFGTL 177
           A E++  +       D V+Y I+IHGL   G++D++  +  +M   A    PNVITF TL
Sbjct: 170 AREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTL 229

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           IHG  R  E  K +E+   M E    P+    + ++  L + E
Sbjct: 230 IHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAE 272



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+  E+E AL ++  ML  G KP+   + TL  GL    +V +A +LF++M +  
Sbjct: 229 LIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQAC 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D   Y   I G CK G + E+ +L+R +      +  I  ++ LIDG CK G+L  A
Sbjct: 289 IPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRA 348

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L AD  TY I+I GL    ++D+A +++  M E     + ++  + + G
Sbjct: 349 NELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGG 408

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +   +    ++   +P+     I+ + L K
Sbjct: 409 LCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 446



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 1/159 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI GYCK   ++ A  LY EM    G++P +V  NTL  G  ++ ++ RA +L  EM   
Sbjct: 299 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 358

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+AADT TY I I GL +   + E++E+++ +R  K  LD  +    + GLCK+G ++ A
Sbjct: 359 GLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 418

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
             +F +  +   V +  T+ I+   L   G+++ A  L 
Sbjct: 419 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 457



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 1/202 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           LI G C+ +++  A  L+ +M    I PD V +N+L  G  +   ++ A KL+ EM    
Sbjct: 264 LIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGA 323

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T+   IDG CK G +  + EL   +       D   Y  LI GL ++ +L+ A
Sbjct: 324 GLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEA 383

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE++  +     + D V+    + GL   G +D+A+ +F    ++   PN  TF  L   
Sbjct: 384 LEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSES 443

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
            I++       +L+   K +++
Sbjct: 444 LIKLGRVEDAQKLMEPAKARDI 465



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 1/179 (0%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCEL 99
           L +   + +A ++F+ M+ +       TY + I+  C  G   ++++LF+++ R  + E 
Sbjct: 20  LAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEP 79

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D   Y+ LI GLC SG  E A +L   +    + A+V TYS +I  L  + + ++++ + 
Sbjct: 80  DRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVL 139

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +M      P+V  F  ++ GF R N   K  E+   M E    PD     I++  LAK
Sbjct: 140 EEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 198



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M +   A     Y   +  L K G + +++E+F T++   C   +  Y+ LI+  C +G 
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 117 LEIALELFHSLPRGVLV-ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
              AL+LF S+ R   V  D  TY+ +I GL + G  + A  L  +M +  +A NV T+ 
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++I   ++  +P +  ++L +M      PD    + V+   A++
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARS 164


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 109/203 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+N ++  A  +++ M +KG + + V + T+  GL E  +++    LF +M+ D 
Sbjct: 255 LILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDD 314

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                RTYT+ I  L  N   +E ++LF  +R   CE ++  Y+ ++D +CK  +L+ + 
Sbjct: 315 CYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESR 374

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    LV  VVTY+ +I G   +G+++ A ++   ME N   PN  T+  LI GF
Sbjct: 375 RILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGF 434

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +     K + LL KM E  + P
Sbjct: 435 SKRKHVHKAMTLLSKMLESKLTP 457



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 102/182 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K K +  A+ L S+ML   + P +V +N+L     +    + A+KL D ++ +G
Sbjct: 430 LICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENG 489

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY++FID LCK+  + E+ +LF +L+    + +   Y+ LIDG CK+G+++ A+
Sbjct: 490 LVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAI 549

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + +  TY+ +I+G+  +G++ +   +  +M +  V P V T+  LI   
Sbjct: 550 SLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEM 609

Query: 182 IR 183
           +R
Sbjct: 610 LR 611



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 110/213 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++  CK ++++ +  + +EM+ KG+ P VV +N L  G  E  ++E A ++   M+ +
Sbjct: 359 VMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESN 418

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + RTY   I G  K  ++ +++ L   +   K    +  Y+ LI   CK+G  + A
Sbjct: 419 NCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSA 478

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   L    LV D  TYS+ I  L    +M++A DLF  ++E  +  N + +  LI G
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  +  + I LL +M  ++ +P++S  + ++
Sbjct: 539 HCKAGKIDEAISLLERMHSEDCLPNSSTYNSLI 571



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 2/205 (0%)

Query: 2   LINGYCKNKEIEGALNLY-SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++N Y K   I  A NLY S++   G+ PD   + +L +G    + V  A+K+F+ M   
Sbjct: 220 MVNAYSKMGNIVEA-NLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNK 278

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +YT  I GLC+ G I E + LF+ +R   C   ++ Y+ +I  L  + R    
Sbjct: 279 GCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEG 338

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF+ +       +V TY++M+  +  + ++D++  +  +M E  + P+V+T+  LI G
Sbjct: 339 MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRG 398

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           +         +E+L  M+  N  P+
Sbjct: 399 YCEEGRIEAALEILGLMESNNCRPN 423



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 101/213 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+   IE AL +   M S   +P+   +N L  G  +   V +A  L  +M    
Sbjct: 395 LIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESK 454

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I   CK G+   + +L   L+      D   YS  ID LCKS R+E A 
Sbjct: 455 LTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEAC 514

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF+SL    + A+ V Y+ +I G    G++D+A  L   M      PN  T+ +LI+G 
Sbjct: 515 DLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGV 574

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  +  + + ++  M +  V P  +  +I+++
Sbjct: 575 CKEGKVQEGLSMVENMSKMGVKPTVATYTILIE 607



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK    + A  L   +   G+ PD   ++     L +  ++E A  LF+ ++  G
Sbjct: 465 LIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKG 524

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+   YT  IDG CK G I E++ L   +    C  +   Y+ LI G+CK G+++  L
Sbjct: 525 IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGL 584

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++ +  +   V TY+I+I  +  +G  D A+ +F  M      P+V T+   IH +
Sbjct: 585 SMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTY 644

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  +   ++ +M E  VMPD+   ++++
Sbjct: 645 CTSGNVKEAEGMMARMIEAGVMPDSLTYTLLI 676



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 100/187 (53%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y+EML+  I P++   NT+     ++  +  A     ++ + G++ D+ TYT  I G C
Sbjct: 201 VYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYC 260

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           +N  +  + ++F  +    C  +  +Y+ +I GLC++GR++  + LF  +        V 
Sbjct: 261 RNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVR 320

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+++IH L+ + +  +  DLF +M E +  PNV T+  ++    +  +  +   +L++M
Sbjct: 321 TYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEM 380

Query: 198 KEKNVMP 204
            EK ++P
Sbjct: 381 MEKGLVP 387



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 98/208 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+  CK+K +E A +L++ +  KGIK + V++  L  G  +  +++ A  L + M  +
Sbjct: 499 VFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSE 558

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               ++ TY   I G+CK G + E + +   +  +  +  +  Y+ LI+ + + G  + A
Sbjct: 559 DCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHA 618

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F+ +       DV TY+  IH     G + +A  +   M E  V P+ +T+  LI  
Sbjct: 619 NRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISA 678

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
           + R+        +L +M +    P   I
Sbjct: 679 YERLGLAYDAFNVLKRMLDAGCDPSHPI 706



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 92/192 (47%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
            K  V  +N L + L     ++   +++ EM  D +  +  T    ++   K G IVE+ 
Sbjct: 175 FKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEAN 234

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                +       D   Y+ LI G C++  +  A ++F+ +P      + V+Y+ +IHGL
Sbjct: 235 LYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGL 294

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D+   LF  M E+   P V T+  +IH     +   + ++L ++M+E++  P+ 
Sbjct: 295 CEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNV 354

Query: 207 SIVSIVVDLLAK 218
              +++VD + K
Sbjct: 355 HTYTVMVDAMCK 366



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 83/177 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I+ A++L   M S+   P+   +N+L  G+ +  +V+    + + M + G
Sbjct: 535 LIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMG 594

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TYTI I+ + + G    +  +F  +     + D+  Y+  I   C SG ++ A 
Sbjct: 595 VKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAE 654

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            +   +    ++ D +TY+++I      G    A ++   M +    P+   +  LI
Sbjct: 655 GMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 2/144 (1%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           +I   + +++   K G +  A      + +  L  D  TY+ +I G   +  ++ A+ +F
Sbjct: 213 NIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVF 272

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M       N +++ T+IHG        + I L  KM+E +  P     ++++  L  N
Sbjct: 273 NMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGN 332

Query: 220 EISLNSLPSFTVHERQEEVDESNV 243
           + +L  +  F  +E +E   E NV
Sbjct: 333 DRNLEGMDLF--NEMRERSCEPNV 354


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 117/220 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK K ++ A+ L+ E+ +K + P +  +N+L  GL    ++    KL DEM   
Sbjct: 340 VLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS 399

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY I ID LCK G I+E++ +   +     + +I  Y+ ++DG C    + +A
Sbjct: 400 AQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F+ + +  L  D++ Y+++I+G      +D+A  LF +M    + P++ ++ +LI G
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +     V ELL +M +    PD    +I++D   K +
Sbjct: 520 LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQ 559



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 115/221 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK   I  A  + + M  +G KPD+V +N L  G      V  A +LF+ M + 
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + IDG CK   + E++ LF+ L        I +Y+ LIDGLC SGR+   
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       DVVTY+I+I  L  +G++ +A  + + M +  V PN++T+  ++ G
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +   N  +   ++ ++M +  + PD    +++++   K E+
Sbjct: 450 YCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEM 490



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+  +  AL L S++  +GI  D V +N+L  G   + + +   +L  +M R+ 
Sbjct: 201 LIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVREN 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T+ I ID LCK G I+E+  +   +     + DI  Y+ L++G C    +  A 
Sbjct: 261 VDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAR 320

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ + +  L  DV+ Y+++I G      +D+A  LF ++    + P + ++ +LI G 
Sbjct: 321 ELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGL 380

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 S V +LL +M      PD    +I++D L K
Sbjct: 381 CNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 114/220 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+C N  I  AL+    +L++G   D   + TL  GL +  Q++ A  L  EM++  
Sbjct: 131 IINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS 190

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y+  IDGLCK+G++ +++ L   +      LD   Y+ LIDG C  GR +   
Sbjct: 191 VQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT 250

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  +  D  T++I+I  L  +G++ +A  +   M +    P+++T+  L+ G+
Sbjct: 251 QLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY 310

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                  +  EL ++M ++ + PD    ++++D   K ++
Sbjct: 311 CSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK   I  AL +   M+ KG+KP++V +N +  G    + V  A  +F+ M + 
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + I+G CK   + E++ LF+ +R      DI +Y+ LIDGLC  GR+   
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF--------------------- 159
            EL   +       DV+TY+I++         DKA  LF                     
Sbjct: 530 QELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNL 589

Query: 160 -----LDMEENAV--------APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                L M E+A+        +PNV T+  LI+   +     + + LL KM++ +  PDA
Sbjct: 590 CKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDA 649

Query: 207 SIVSIVVD-LLAKNE 220
               I++  LL +NE
Sbjct: 650 ITFEIIIGVLLQRNE 664



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 1/197 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK + ++ A+ L+ EM  K + PD+  +N+L  GL  + ++    +L DEM   
Sbjct: 480 VLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS 539

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY I +D  CK     +++ LFR + +     D      ++D LCK  +L++A
Sbjct: 540 GQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMA 598

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    L       +V TY+I+I+ L  DG   +A  L   ME+N   P+ ITF  +I  
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 181 FIRINEPSKVIELLHKM 197
            ++ NE  K  +L  +M
Sbjct: 659 LLQRNETDKAEKLREEM 675



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L++++ SKGI P +     L    F       AF L   + + G   +  T+   I+
Sbjct: 74  AISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIIN 133

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C NG I ++++  + L       D   Y  LI+GL K+G+++ AL L   + +  +  
Sbjct: 134 GFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQP 193

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           ++V YS +I GL  DG +  A  L   + E  +  + +T+ +LI G   +    +V +LL
Sbjct: 194 NLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL 253

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            KM  +NV PD    +I++D L K
Sbjct: 254 TKMVRENVDPDDYTFNILIDALCK 277



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 8/209 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y        A +L + +L  G +P++V  NT+  G      + +A      +   
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GL KNG I  ++ L + +     + ++  YS LIDGLCK G +  A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +  RG+L+ D VTY+ +I G  + G+  +   L   M    V P+  TF  LI 
Sbjct: 215 LGLCSQIGERGILL-DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILID 273

Query: 180 GFI---RINEPSKVIELLHKMKEKNVMPD 205
                 RI E   V+ ++ K  EK   PD
Sbjct: 274 ALCKEGRILEAQGVLAMMSKRGEK---PD 299



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 101/208 (48%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+ + ++ A+  ++ M+     P   + + L   +  +     A  LF ++Q  G++   
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+TI I+      +   +  L  T+     + ++  ++ +I+G C +G +  AL+   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L     + D  TY  +I+GL  +GQ+  A  L  +ME+++V PN++ +  LI G  +   
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVD 214
            S  + L  ++ E+ ++ DA   + ++D
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLID 238



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 79/177 (44%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
               V+ A   F+ M R      T  +   +  + + G+   ++ LF  L+       I 
Sbjct: 32  RFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIA 91

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            ++ LI+          A  L  ++ +     ++VT++ +I+G   +G + KA D   ++
Sbjct: 92  TFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNL 151

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  +  T+GTLI+G  +  +    + LL +M++ +V P+  + S ++D L K+
Sbjct: 152 LAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKD 208


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 121/219 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY KN  +E AL LY EM  K +K   +  N +  GLF+  ++  A +L+ +M   G
Sbjct: 556 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRG 615

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   + GLC+N  + E++ +F  LR  + ELD++ +S +I+ L K GR++ A 
Sbjct: 616 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAK 675

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++     V DV+TYS+MI     +G ++++ +LFL ME+N  A +      ++   
Sbjct: 676 SLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRL 735

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +   +  +    L K+ EKN   +AS  ++++ ++++ +
Sbjct: 736 LEKGDVRRAGTYLTKIDEKNFSLEASTAALLIPIVSEKK 774



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 121/287 (42%), Gaps = 70/287 (24%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  E++ A  L+ EM+ +G+ PDVV +N+L  GL +   +++A  +   M   G
Sbjct: 206 VIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKG 265

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DTRTY I I G C  G + E+V L + +     + D+  YS LI   CK GR   A 
Sbjct: 266 VMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEAR 325

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQM----------------------------- 152
            +F S+ R     +   Y I++HG    G +                             
Sbjct: 326 SVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAY 385

Query: 153 ------DKAHDLFLDMEENA-----------------------------------VAPNV 171
                 DKA   F +M +N                                    ++PN+
Sbjct: 386 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNI 445

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I+F +LIHG   I E  KV EL  +M  + + PDA  ++ ++D L K
Sbjct: 446 ISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCK 492



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 3/232 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI G C  K+ + AL L   M + G     P+VV +NT+  G F+  +V++A+ LF EM 
Sbjct: 168 LIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMM 227

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+  D  TY   IDGLCK   + ++V + + +       D + Y+ +I G C  G+LE
Sbjct: 228 GQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLE 287

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ L   +    L  DVVTYS++I      G+  +A  +F  M      PN   +  L+
Sbjct: 288 EAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 347

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           HG+        V +LL  M    +  +    +I++   AK+     ++ +FT
Sbjct: 348 HGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFT 399



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   E +    L  EM+++GI PD +  NT+   L +  +V  A   FD +   G
Sbjct: 451 LIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIG 510

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y   IDG C  G + ES++    +  +    D   Y+ L++G  K+GR+E AL
Sbjct: 511 VKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDAL 570

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  +    +T +IM+HGL+  G++  A +L++ M +      + T+ T++ G 
Sbjct: 571 ALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGL 630

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +   + + +   ++ K    D    SIV++ L K
Sbjct: 631 CENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLK 667



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G C     + A+++ +  M   G  PDV  +N L  GL    + + A +L   M  D
Sbjct: 132 LIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTAD 191

Query: 61  G---VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           G    + +  +Y   IDG  K G + ++  LF  +       D+  Y+ LIDGLCK+  +
Sbjct: 192 GGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAM 251

Query: 118 EIALELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A+ +  H   +GV+  D  TY+IMI G  + GQ+++A  L   M  + + P+V+T+  
Sbjct: 252 DKAVAILQHMFDKGVM-PDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSL 310

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           LI  + +I   ++   +   M  K   P+++I  I++
Sbjct: 311 LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 347



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI  +C    ++ A   ++  L  G +   V  N L  GL + ++ + A  + F  M  
Sbjct: 96  ILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPE 155

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI---LKCELDIQAYSCLIDGLCKSGR 116
            G   D  +Y   I GLC      E++EL   +       C  ++ +Y+ +IDG  K G 
Sbjct: 156 LGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGE 215

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A  LFH +    L  DVVTY+ +I GL     MDKA  +   M +  V P+  T+  
Sbjct: 216 VDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNI 275

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +I G+  + +  + + LL KM    + PD    S+++    K
Sbjct: 276 MIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCK 317



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  YCK      A +++  M+ KG KP+  I++ L  G      +     L D M RD
Sbjct: 310 LLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRD 369

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  + R + I I    K+G + +++  F  +R      D+ +YS +I  LCK+GR+E A
Sbjct: 370 GIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDA 429

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL---------------------- 158
           +  F+ +    L  ++++++ +IHGL + G+  K  +L                      
Sbjct: 430 VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDN 489

Query: 159 ------------FLDMEEN-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                       F DM  +  V P+V+++ TLI G+  + +  + I+ L +M    + PD
Sbjct: 490 LCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPD 549

Query: 206 ASIVSIVVDLLAKN 219
           +   + +++   KN
Sbjct: 550 SWTYNSLLNGYFKN 563



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G  +   I  A  LY +M+ +G +  +  +NT+  GL E   V+ A ++F++++  
Sbjct: 590 IMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSK 649

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D RT++I I+ L K G I E+  LF  + +     D+  YS +I    + G LE +
Sbjct: 650 EFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEES 709

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             LF S+ +    AD    +I++  L   G + +A      ++E   +    T   LI
Sbjct: 710 DNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLI 767


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 22/227 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK ++IE A  L+SE+L  G+ P+ VI+N+L  G   ++ +E A  L   M  +G
Sbjct: 669 LIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEG 728

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D +TYT  IDGL K G +V +++L+  +       DI  Y+ LI+GLC  G+LE A 
Sbjct: 729 ISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQ 788

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + R  +  +V  Y+ +I G +  G + +A  L  +M +  + PN  T+  LI+G 
Sbjct: 789 KILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGK 848

Query: 182 I----------------------RINEPSKVIELLHKMKEKNVMPDA 206
           I                      RINE   + +++ K   K + P+A
Sbjct: 849 IKGGNSALKSLLSLKFKDGKGMKRINEQDSIKKVIEKAVNKYLRPEA 895



 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 116/213 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CKN   + AL + +EM +KG++ D+  +  L  G  +   +E A  LF E+   G
Sbjct: 634 LINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGG 693

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ ++  Y   I G      +  ++ L + +       D+Q Y+ LIDGL K GRL +AL
Sbjct: 694 LSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLAL 753

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +    ++ D++ Y+++I+GL   GQ++ A  +  +ME +++ PNV  +  LI G 
Sbjct: 754 DLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGH 813

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     +   L ++M +K + P+ +   I+++
Sbjct: 814 FKAGNLQEAFRLHNEMLDKGLTPNDTTYDILIN 846



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 108/216 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I ING CK      A ++  + + KG  P  + +N++  G  +   V  A   + EM   
Sbjct: 563 IKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCES 622

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TYT  I+G CKN     ++++   +R    ELDI AY  LIDG CK   +E A
Sbjct: 623 GVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETA 682

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L  G L  + V Y+ +I G  N   M+ A +L   M    ++ ++ T+ TLI G
Sbjct: 683 SWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDG 742

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            ++       ++L  +M  K ++PD  I +++++ L
Sbjct: 743 LLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGL 778



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 7/207 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   CKN  +  A +LY++M +K I P V I N+L  G  ++   E A KLFDE    
Sbjct: 389 VLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDE---- 444

Query: 61  GVAADTR---TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            VA D     TY   +  LCK G + E+  L++ +          +Y+ +I G C+ G L
Sbjct: 445 AVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNL 504

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           ++A  +F  +    L  +V+TYSI++ G + +G  + A  +F  M +  + P+  T+   
Sbjct: 505 DMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIK 564

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMP 204
           I+G  ++   S+  ++L K  EK  +P
Sbjct: 565 INGLCKVGRTSEAQDMLKKFVEKGFVP 591



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK  ++  A  L+ +ML KG+ P  V +N++ +G      ++ A  +F +M   G
Sbjct: 459 LLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCG 518

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGRLE 118
           +  +  TY+I +DG  KNG    +  +F  +    I+  +     Y+  I+GLCK GR  
Sbjct: 519 LKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDF---TYNIKINGLCKVGRTS 575

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A ++         V   +TY+ ++ G   +G +  A   + +M E+ V+PNVIT+ TLI
Sbjct: 576 EAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLI 635

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +GF + N     +++ ++M+ K +  D +    ++D   K +
Sbjct: 636 NGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQ 677



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+   ++ A +++S+ML  G+KP+V+ ++ L  G F+    E AF +FD M  + 
Sbjct: 494 MILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDEN 553

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFR------------------------------- 90
           +     TY I I+GLCK G   E+ ++ +                               
Sbjct: 554 IVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSAL 613

Query: 91  TLRILKCELDIQ----AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           T     CE  +      Y+ LI+G CK+   ++AL++ + +    L  D+  Y  +I G 
Sbjct: 614 TAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGF 673

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                ++ A  LF ++ +  ++PN + + +LI G+  +N     + L  +M  + +  D 
Sbjct: 674 CKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDL 733

Query: 207 SIVSIVVDLLAK 218
              + ++D L K
Sbjct: 734 QTYTTLIDGLLK 745



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 3/195 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++    K+   E A   + E  S+G+K D   ++ +     +   VE A  L  +M+  
Sbjct: 249 IMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDK 308

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+T  I    K G +VE++ L   +     ++++   + L+ G CK  +L  A
Sbjct: 309 GWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSA 368

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE F  +       + VTY+++I     +G M KA+DL+  M+   + P V    +LI G
Sbjct: 369 LEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRG 428

Query: 181 FIRI---NEPSKVIE 192
           F+++    E SK+ +
Sbjct: 429 FLKVESREEASKLFD 443



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 93/213 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L+    KN  I  A  +Y +M+ KG+  D    + +     + +  E A K F E +  
Sbjct: 214 FLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSR 273

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y+I I   CKN  +  +  L + +R          ++ +I    K G +  A
Sbjct: 274 GVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEA 333

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +    +  +VV  + ++ G     ++  A + F  M EN  +PN +T+  LI  
Sbjct: 334 LRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEW 393

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +    +K  +L  +MK KN+ P   IV+ ++
Sbjct: 394 CCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLI 426



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N Y K  ++  A+  ++ ++   I P +   N L   L +   +  A +++++M   G
Sbjct: 180 LLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKG 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T  I +    K+    E+ + F   +    +LD  AYS +I   CK+  +E+A 
Sbjct: 240 VHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELAC 299

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V    T++ +I      G M +A  L  +M    V  NV+   TL+ G+
Sbjct: 300 GLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGY 359

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + ++    +E   KM E    P+    +++++   KN
Sbjct: 360 CKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKN 397



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING C   ++E A  + +EM    I P+V I+N L  G F+   ++ AF+L +EM   
Sbjct: 773 VLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDK 832

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  +  TY I I+G  K G
Sbjct: 833 GLTPNDTTYDILINGKIKGG 852


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 125/249 (50%), Gaps = 32/249 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF---------- 51
           +++ +     ++ A +++ +M+ KG++PD V +N L     +  Q+ERAF          
Sbjct: 176 VMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFT 235

Query: 52  ----------------------KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
                                 +LF +M+  G+ ++  TY I I+ L   G + +  +L+
Sbjct: 236 NEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLY 295

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             +     + DI   + ++D L K+GR+E A ELF  +    L AD VTY+I+I+GL   
Sbjct: 296 LEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRA 355

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++D A  L L+MEEN  APN+IT+ TLI  + + +  S    L  +MKE+ V P+    
Sbjct: 356 GKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSY 415

Query: 210 SIVVDLLAK 218
           S +++   K
Sbjct: 416 SSLIEGFGK 424



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 96/199 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI        +E    LY EM+   IK D+V  N +   L +  +VE AF+LF +M+  
Sbjct: 277 ILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFK 336

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ADT TY I I+GL + G +  +  L   +    C  +I  Y+ LI    K   L  A
Sbjct: 337 GLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAA 396

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  +VV+YS +I G    G+ D A  LF +M+     PN +T+  LI  
Sbjct: 397 TRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDC 456

Query: 181 FIRINEPSKVIELLHKMKE 199
            IR       +E L +M++
Sbjct: 457 LIRAGRFGAAMEYLREMRD 475



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  + K  +++  L +Y +ML     PD    N L   L +  QVE A  +F +M +  
Sbjct: 71  MIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLN 130

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TYTI I  L   G I   ++LF ++    C+ ++  Y  ++     +GR++ A 
Sbjct: 131 VSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEAC 190

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +  L  D VTY+I+I      GQ+++A D    + ++    N +T+ +L+   
Sbjct: 191 DIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDF---VGKSRSFTNEVTYNSLLSSL 247

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            R  +   ++EL  +MK K ++ +    +I+++ L 
Sbjct: 248 GRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLG 283



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 32/250 (12%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+   K  ++E A N++ +M    + PDV  +  L   L  I +++   KLF+ M   
Sbjct: 105 ILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQ 164

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   +      G + E+ ++F+ +     + D   Y+ LID   K+G+LE A
Sbjct: 165 GCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERA 224

Query: 121 --------------------------------LELFHSLPRGVLVADVVTYSIMIHGLYN 148
                                           +ELF  +    LV++ +TY+I+I  L  
Sbjct: 225 FDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGW 284

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G+++    L+L+M +N +  +++T   ++    +        EL   MK K +  D   
Sbjct: 285 AGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVT 344

Query: 209 VSIVVDLLAK 218
            +I+++ L +
Sbjct: 345 YNILINGLGR 354



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 18/229 (7%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L   M     K D  + NTL     E + +E+A +      ++G      TY+  I    
Sbjct: 17  LVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFM 76

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G +   + +++ +   K   D   ++ LID L K+ ++E A  +F  + +  +  DV 
Sbjct: 77  KGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVY 136

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+I+I  L   G++D    LF  M      PN+ T+ +++H F       +  ++  +M
Sbjct: 137 TYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQM 196

Query: 198 KEKNVMPDASIVSIVVDLLAK------------------NEISLNSLPS 228
            +K + PDA   +I++D   K                  NE++ NSL S
Sbjct: 197 VQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLS 245



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 93/197 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y +   +E AL   +    +G +P    ++++     +   V+    ++ +M +  
Sbjct: 36  LIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAK 95

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I ID L K   + E+  +F  +  L    D+  Y+ LI  L   GR++  +
Sbjct: 96  FVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVM 155

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+       ++ TY  ++H   + G++D+A D+F  M +  + P+ +T+  LI  F
Sbjct: 156 KLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAF 215

Query: 182 IRINEPSKVIELLHKMK 198
            +  +  +  + + K +
Sbjct: 216 GKTGQLERAFDFVGKSR 232



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING  +  +++ A  L  EM   G  P+++ +NTL     +   +  A +LF EM+  
Sbjct: 347 ILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKER 406

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  +Y+  I+G  K G    ++ LFR ++   C  +   Y+ LID L ++GR   A
Sbjct: 407 GVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAA 466

Query: 121 LELFHSLPRGVLVADVVTYSIMIH 144
           +E    +         VT S+++ 
Sbjct: 467 MEYLREMRDAGCQMGKVTKSLLVR 490



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   +E A  L+ +M  KG+  D V +N L  GL    +++ A  L  EM+ +G A +  
Sbjct: 319 KAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNII 378

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   I    K   +  +  LF  ++      ++ +YS LI+G  K+GR + A+ LF  +
Sbjct: 379 TYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREM 438

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
                  + VTY+++I  L   G+   A +   +M +       +T   L+ 
Sbjct: 439 KAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLVR 490


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G  ++  +   F+L + MQ  
Sbjct: 141 ILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E    M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 103/196 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  ++     L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKM 197
            +        ++L +M
Sbjct: 357 CQEGRSVDAEKMLREM 372



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    +   + T+  +I+ 
Sbjct: 331 FEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +L+ +M+    +P
Sbjct: 391 FCKKGDVWTGSKLMKEMQRDGYVP 414



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +   CK G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L     L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 117/220 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK K ++ A+ L+ E+ +K + P +  +N+L  GL    ++    KL DEM   
Sbjct: 340 VLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS 399

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY I ID LCK G I+E++ +   +     + +I  Y+ ++DG C    + +A
Sbjct: 400 AQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F+ + +  L  D++ Y+++I+G      +D+A  LF +M    + P++ ++ +LI G
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +     V ELL +M +    PD    +I++D   K +
Sbjct: 520 LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQ 559



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 115/221 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK   I  A  + + M  +G KPD+V +N L  G      V  A +LF+ M + 
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + IDG CK   + E++ LF+ L        I +Y+ LIDGLC SGR+   
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       DVVTY+I+I  L  +G++ +A  + + M +  V PN++T+  ++ G
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +   N  +   ++ ++M +  + PD    +++++   K E+
Sbjct: 450 YCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEM 490



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+  +  AL L S++  +GI  D V +N+L  G   + + +   +L  +M R+ 
Sbjct: 201 LIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVREN 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T+ I ID LCK G I+E+  +   +     + DI  Y+ L++G C    +  A 
Sbjct: 261 VDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAR 320

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ + +  L  DV+ Y+++I G      +D+A  LF ++    + P + ++ +LI G 
Sbjct: 321 ELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGL 380

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 S V +LL +M      PD    +I++D L K
Sbjct: 381 CNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 114/220 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+C N  I  AL+    +L++G   D   + TL  GL +  Q++ A  L  EM++  
Sbjct: 131 IINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS 190

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y+  IDGLCK+G++ +++ L   +      LD   Y+ LIDG C  GR +   
Sbjct: 191 VQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT 250

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  +  D  T++I+I  L  +G++ +A  +   M +    P+++T+  L+ G+
Sbjct: 251 QLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY 310

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                  +  EL ++M ++ + PD    ++++D   K ++
Sbjct: 311 CSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 1/197 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK + ++ A+ L+ EM  K + PD+  +N+L  GL  + ++    +L DEM   
Sbjct: 480 VLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS 539

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY I +D  CK     +++ LFR + +     D      ++D LCK  +L++A
Sbjct: 540 GQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMA 598

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    L       +V TY+I+I+ L  DG   +A  L   ME+N   P+ ITF  +I  
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 181 FIRINEPSKVIELLHKM 197
            ++ NE  K  +L  +M
Sbjct: 659 LLQRNETDKAEKLREEM 675



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 35/255 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK   I  AL +   M+ KG+KP++V +N +  G    + V  A  +F+ M + 
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + I+G CK   + E++ LF+ +R      DI +Y+ LIDGLC  GR+   
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF--------------------- 159
            EL   +       DV+TY+I++         DKA  LF                     
Sbjct: 530 QELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNL 589

Query: 160 -----LDMEENAV--------APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                L M E+A+        +PNV T+  LI+   +     + + LL KM++ +  PDA
Sbjct: 590 CKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDA 649

Query: 207 SIVSIVVD-LLAKNE 220
               I++  LL +NE
Sbjct: 650 ITFEIIIGVLLQRNE 664



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A++L++++ SKGI P +     L    F       AF L   + + G   +  T+   I+
Sbjct: 74  AISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIIN 133

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C NG I ++++  + L       D   Y  LI+GL K+G+++ AL L   + +  +  
Sbjct: 134 GFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQP 193

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           ++V YS +I GL  DG +  A  L   + E  +  + +T+ +LI G   +    +V +LL
Sbjct: 194 NLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLL 253

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            KM  +NV PD    +I++D L K
Sbjct: 254 TKMVRENVDPDDYTFNILIDALCK 277



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 8/209 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y        A +L + +L  G +P++V  NT+  G      + +A      +   
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+GL KNG I  ++ L + +     + ++  YS LIDGLCK G +  A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L   +  RG+L+ D VTY+ +I G  + G+  +   L   M    V P+  TF  LI 
Sbjct: 215 LGLCSQIGERGILL-DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILID 273

Query: 180 GFI---RINEPSKVIELLHKMKEKNVMPD 205
                 RI E   V+ ++ K  EK   PD
Sbjct: 274 ALCKEGRILEAQGVLAMMSKRGEK---PD 299



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 101/208 (48%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+ + ++ A+  ++ M+     P   + + L   +  +     A  LF ++Q  G++   
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+TI I+      +   +  L  T+     + ++  ++ +I+G C +G +  AL+   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L     + D  TY  +I+GL  +GQ+  A  L  +ME+++V PN++ +  LI G  +   
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVD 214
            S  + L  ++ E+ ++ DA   + ++D
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLID 238



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 79/177 (44%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
               V+ A   F+ M R      T  +   +  + + G+   ++ LF  L+       I 
Sbjct: 32  RFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIA 91

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            ++ LI+          A  L  ++ +     ++VT++ +I+G   +G + KA D   ++
Sbjct: 92  TFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNL 151

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  +  T+GTLI+G  +  +    + LL +M++ +V P+  + S ++D L K+
Sbjct: 152 LAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKD 208


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 112/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CKN  ++ AL +  EM +KG+K D+  +  L  G  +   +E A  LF E+  +G
Sbjct: 625 LMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEG 684

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I G    G +V +++L++ +       D+  Y+ LIDGL K G L +A 
Sbjct: 685 LNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILAS 744

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +    LV D + Y+++++GL   GQ  K   +F +M++N V PNV+ +  +I G 
Sbjct: 745 ELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGH 804

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     +   L  +M +K ++PD +   I+V
Sbjct: 805 YREGNLDEAFRLHDEMLDKGILPDGATFDILV 836



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 107/192 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +E A  L+SE+L +G+ P   I+N+L  G   +  +  A  L+ +M +DG
Sbjct: 660 LIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDG 719

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDGL K+G ++ + EL+  ++ +    D   Y+ +++GL K G+    +
Sbjct: 720 LRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVV 779

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +  +  +V+ Y+ +I G Y +G +D+A  L  +M +  + P+  TF  L+ G 
Sbjct: 780 KMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQ 839

Query: 182 IRINEPSKVIEL 193
           +   +P +   L
Sbjct: 840 VGNLQPVRAASL 851



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +ING CK  +   A  L + M+  K +    + +N++  G F+  +++ A   ++EM  +
Sbjct: 554 IINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGN 613

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TYT  ++GLCKN  + +++E+   ++    +LDI AY  LIDG CK   +E A
Sbjct: 614 GISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESA 673

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L    L      Y+ +I G  N G M  A DL+  M ++ +  ++ T+ TLI G
Sbjct: 674 SALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDG 733

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++        EL  +M+   ++PD  I +++V+ L+K
Sbjct: 734 LLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSK 771



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK  + + A  L S+M S+GI P+VV +N + +G      ++ A  +F  +   G
Sbjct: 449 ILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKG 508

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+I IDG  +N     ++E+   +     E++   Y  +I+GLCK G+   A 
Sbjct: 509 LKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKAR 568

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL  ++     L    ++Y+ +I G + +G+MD A   + +M  N ++PNVIT+ +L++G
Sbjct: 569 ELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNG 628

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + N   + +E+  +MK K V  D      ++D   K
Sbjct: 629 LCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 3/220 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   ++ A+ L  EMLS GI  +VV   +L  G  + + +  A  LFD+M+++G + ++ 
Sbjct: 316 KQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSV 375

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-HS 126
           T+++ I+   KNG + +++E ++ + +L     +     +I G  K  + E AL+LF  S
Sbjct: 376 TFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDES 435

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
              G  +A+V   + ++  L   G+ D+A +L   ME   + PNV+++  ++ G  R   
Sbjct: 436 FETG--LANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKN 493

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
                 +   + EK + P+    SI++D   +N    N+L
Sbjct: 494 MDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNAL 533



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 1/200 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + KN E+E AL  Y +M   G+ P V   +T+  G  +  + E A KLFDE    
Sbjct: 379 VLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFET 438

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A      TI +  LCK G   E+ EL   +       ++ +Y+ ++ G C+   +++A
Sbjct: 439 GLANVFVCNTI-LSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F ++    L  +  TYSI+I G + +     A ++   M  + +  N + + T+I+G
Sbjct: 498 RIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIING 557

Query: 181 FIRINEPSKVIELLHKMKEK 200
             ++ + SK  ELL  M E+
Sbjct: 558 LCKVGQTSKARELLANMIEE 577



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N Y K+++ + A+++ ++ML   + P     N     L + + +  A +L+  M   G
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIG 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T  + +    +     E++E+         E D   YS  +   CK+  L +A 
Sbjct: 229 VDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMAN 288

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   +  + + V    TY+ +I      G MD A  L  +M  + ++ NV+   +LI G
Sbjct: 289 SLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITG 348

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + N+    + L  KM+++   P++   S++++   KN
Sbjct: 349 HCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKN 387



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 95/195 (48%), Gaps = 1/195 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+    + ++   AL + S  + +G +PD ++++       +   +  A  L  EM+  
Sbjct: 238 LLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEK 297

Query: 61  GVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +   ++ TYT  I    K G + +++ L   +      +++ A + LI G CK+  L  
Sbjct: 298 KLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVS 357

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL LF  + +     + VT+S++I     +G+M+KA + +  ME   + P+V    T+I 
Sbjct: 358 ALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQ 417

Query: 180 GFIRINEPSKVIELL 194
           G+++  +  + ++L 
Sbjct: 418 GWLKGQKHEEALKLF 432



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 1/191 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  LYS M++ G+  D V    L        +   A ++       G   D+  Y++ + 
Sbjct: 217 AKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQ 276

Query: 75  GLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
             CK   +  +  L R ++  K C    + Y+ +I    K G ++ A+ L   +    + 
Sbjct: 277 ACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGIS 336

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            +VV  + +I G   +  +  A  LF  ME+   +PN +TF  LI  F +  E  K +E 
Sbjct: 337 MNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEF 396

Query: 194 LHKMKEKNVMP 204
             KM+   + P
Sbjct: 397 YKKMEVLGLTP 407



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 44/88 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG  K  +    + ++ EM    + P+V+I+N +  G +    ++ AF+L DEM   
Sbjct: 764 VIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDK 823

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           G+  D  T+ I + G   N   V +  L
Sbjct: 824 GILPDGATFDILVSGQVGNLQPVRAASL 851


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   ++E AL L++E  +K +KPD+V++N+L  GL     +  A ++ +EM  DG
Sbjct: 260 LINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDG 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I I+GLCK G I ++  +     +     D+  ++ +IDG CK  +L+ AL
Sbjct: 320 CHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSAL 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D +TY+ +++GL   G+  + ++ F +M      PN IT+  LI  F
Sbjct: 380 QLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENF 439

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +IN+  +   ++ +M +  ++PD    + ++    +N
Sbjct: 440 CKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRN 477



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK   ++ A  L  + + KG  PD V + +L  GL     VERA +LF+E Q   
Sbjct: 225 IIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKD 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EIA 120
           +  D   Y   + GLC+ G I+ ++++   +    C  DI  Y+ +I+GLCK G + + A
Sbjct: 285 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +  ++ +G L  DV T++ MI G     ++D A  L   M    +AP+ IT+ ++++G
Sbjct: 345 VVMNDAIVKGYL-PDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNG 403

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +  +  +V E   +M  K   P+A    I  ++L +N   +N L
Sbjct: 404 LCKAGKAKEVNETFEEMILKGCRPNA----ITYNILIENFCKINQL 445



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 104/214 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK   I  A  + ++ + KG  PDV   NT+  G  +  +++ A +L + M   
Sbjct: 329 IVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMY 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D  TY   ++GLCK G   E  E F  + +  C  +   Y+ LI+  CK  +LE A
Sbjct: 389 GIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEA 448

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  LV D ++++ +IHG   +G +D A+ LF  ++E   +    TF  LI  
Sbjct: 449 SGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGA 508

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +          ++  +M  K   PD     ++VD
Sbjct: 509 YSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVD 542



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK+ +++ A      M+++G  PD   +NT+  G  +   ++ A +L  +    G
Sbjct: 190 LMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKG 249

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLC  G +  ++ELF   +    + D+  Y+ L+ GLC+ G +  AL
Sbjct: 250 FVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHAL 309

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +       D+ TY+I+I+GL   G +  A  +  D       P+V TF T+I G+
Sbjct: 310 QVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGY 369

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +    ++L+ +M    + PDA   + V++ L K
Sbjct: 370 CKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCK 406



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  C+  +I  +  L +++L +G+  +    N    GL E  ++E A  L + M    
Sbjct: 121 VLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY- 179

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY   + GLCK+  + E+ +  R +    C  D   Y+ +IDG CK   L+ A 
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEAT 239

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL         V D VTY  +I+GL  +G +++A +LF + +   + P+++ + +L+ G 
Sbjct: 240 ELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGL 299

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R       ++++++M E    PD    +IV++ L K
Sbjct: 300 CRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCK 336



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I  +C       AL L   +  +G     + + T+  GL+       A  LFDEM R 
Sbjct: 50  VRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRR 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
            V  D  T+   +  LC+ G I+ES  L    ++LK  + +  ++C   I GLC+ GRLE
Sbjct: 110 DVFPDVATFNNVLHALCQKGDIMESGALLA--KVLKRGMSVNKFTCNIWIRGLCEGGRLE 167

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ L  S+    +  DVVTY+ ++ GL  D ++ +A      M      P+  T+ T+I
Sbjct: 168 EAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTII 226

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
            G+ + +   +  ELL     K  +PD  +  S++  L A+ ++
Sbjct: 227 DGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDV 270



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 107/232 (46%), Gaps = 6/232 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  + +     + EM+ KG +P+ + +N L     +I+Q+E A  +   M +DG
Sbjct: 400 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDG 459

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT ++   I G C+NG +  +  LF+ L           ++ LI        +++A 
Sbjct: 460 LVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAE 519

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       D+ TY +++ G      +D+A+    +M      P++ TFG +++  
Sbjct: 520 KIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSL 579

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
              +  S+ + ++H M    V+P+      VVD +   +    + P   V E
Sbjct: 580 AMNHRVSEAVAIIHIMVRMGVVPE------VVDTILSTDKKEIAAPKILVEE 625



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A +L+ EML + + PDV   N +   L +   +  +  L  ++ + G++ +  T  I+I 
Sbjct: 99  ARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIR 158

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC+ G + E+V L  ++       D+  Y+ L+ GLCK  +++ A +    +     + 
Sbjct: 159 GLCEGGRLEEAVALVESMDAYIAP-DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIP 217

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D  TY+ +I G      + +A +L  D       P+ +T+ +LI+G     +  + +EL 
Sbjct: 218 DDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELF 277

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           ++ + K++ PD  + + +V  L +  + L++L
Sbjct: 278 NEAQAKDLKPDLVVYNSLVKGLCRQGLILHAL 309



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 36/231 (15%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P    +N +   L      ++A K++  M   GVA D RT+T+ I   C  G    +
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY------ 139
           + L R+L    C++   AY  ++ GL   G    A  LF  + R  +  DV T+      
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 140 -----------------------------SIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
                                        +I I GL   G++++A  L   M+   +AP+
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDA-YIAPD 183

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           V+T+ TL+ G  + ++  +  + L +M  +  +PD    + ++D   K ++
Sbjct: 184 VVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDM 234



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  Y     ++ A  ++ EM+SKG KPD+  +  L  G  +   V+RA+    EM   
Sbjct: 504 ILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSK 563

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G      T+   ++ L  N  + E+V +   +
Sbjct: 564 GFVPSMATFGRVLNSLAMNHRVSEAVAIIHIM 595


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 111/203 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I  A   + EM S+ I PDV+ +  +  G  +I  +  A KLF EM   G
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D+ T+T  I+G CK G++ ++  +   +    C  ++  Y+ LIDGLCK G L+ A 
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H + +  L  ++ TY+ +++GL   G +++A  L  + E   +  + +T+ TL+  +
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 536

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +  E  K  E+L +M  K + P
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQP 559



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 116/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C+  ++  A  L+ EM  KG++PD V    L  G  +   ++ AF++ + M + G
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TYT  IDGLCK G +  + EL   +  +  + +I  Y+ +++GLCKSG +E A+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L        L AD VTY+ ++      G+MDKA ++  +M    + P ++TF  L++GF
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                     +LL+ M  K + P+A+  + +V
Sbjct: 572 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGYC+  E++    L   M  KG+KP+  I+ ++   L  I ++  A + F EM R G
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 346

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT  YT  IDG CK G I  + + F  +       D+  Y+ +I G C+ G +  A 
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 406

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LFH +    L  D VT++ +I+G    G M  A  +   M +   +PNV+T+ TLI G 
Sbjct: 407 KLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 466

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +     ELLH+M +  + P+    + +V+ L K+
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 113/213 (53%), Gaps = 3/213 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  E E A   +SEM+ +GI PD V++ TL  G  +   +  A K F EM    +  D 
Sbjct: 330 CKLAEAEEA---FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I G C+ G +VE+ +LF  +     E D   ++ LI+G CK+G ++ A  + + 
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +     +VVTY+ +I GL  +G +D A++L  +M +  + PN+ T+ ++++G  +   
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + ++L+ + +   +  D    + ++D   K+
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++ A  +++ M+  G  P+VV + TL  GL +   ++ A +L  EM + G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   ++GLCK+G I E+V+L           D   Y+ L+D  CKSG ++ A 
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    L   +VT++++++G    G ++    L   M    +APN  TF +L+  +
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
              N       +   M  + V PD 
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDG 631



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  L  EM   G++P++  +N++  GL +   +E A KL  E +  G
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + ADT TYT  +D  CK+G + ++ E+ + +     +  I  ++ L++G C  G LE   
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +  +  T++ ++        +  A  ++ DM    V P+  T+  L+ G 
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 641

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            +     +   L  +MK K      S  S+++    K +  L +   F    R+
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 94/192 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ ++ E    G+  +V  +N +   + ++ +++ A  L   M+  G   D  +Y+  ++
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+ G + +  +L   ++    + +   Y  +I  LC+  +L  A E F  + R  ++ 
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D V Y+ +I G    G +  A   F +M    + P+V+T+  +I GF +I +  +  +L 
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409

Query: 195 HKMKEKNVMPDA 206
           H+M  K + PD+
Sbjct: 410 HEMFCKGLEPDS 421



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 99/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK+  IE A+ L  E  + G+  D V + TL     +  ++++A ++  EM   G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T+ + ++G C +G + +  +L   +       +   ++ L+   C    L+ A 
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAAT 616

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +    +  D  TY  ++ G      M +A  LF +M+    + +V T+  LI GF
Sbjct: 617 AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  +  +  E+  +M+ + +  D  I     D   K +
Sbjct: 677 LKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGK 715



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG-RLEIAL 121
            +D R + +F   L   G + E+  +F  +      L + + +  +  L K   +   A+
Sbjct: 172 GSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI 231

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F   P   +  +V +Y+I+IH +   G++ +AH L L ME     P+VI++ T+++G+
Sbjct: 232 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E  KV +L+  MK K + P++ I   ++ LL +
Sbjct: 292 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 328



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C +  +E    L + ML+KGI P+    N+L       + ++ A  ++ +M   
Sbjct: 566 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D +TY   + G CK   + E+  LF+ ++     + +  YS LI G  K  +   A
Sbjct: 626 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 685

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            E+F  + R  L AD   +       Y   + D   D   ++ EN
Sbjct: 686 REVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 730



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 100/212 (47%), Gaps = 2/212 (0%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY-IV 83
           K    D  + +  F  L +   +  A ++F++M   G+     +  +++  L K+ Y   
Sbjct: 169 KDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTA 228

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
            ++ +FR    +    ++ +Y+ +I  +C+ GR++ A  L   +       DV++YS ++
Sbjct: 229 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 288

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +G    G++DK   L   M+   + PN   +G++I    RI + ++  E   +M  + ++
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGIL 348

Query: 204 PDASIVSIVVDLLAK-NEISLNSLPSFTVHER 234
           PD  + + ++D   K  +I   S   + +H R
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G  +  +++ A+ L  EM S G++PD   ++ L  G  ++ QV+RA  L  +M+RD
Sbjct: 365 LLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRD 424

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   +  LC+ G + ++   F  +    C+LD+ AYS +I G C+    + A
Sbjct: 425 GIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-NCKLDVVAYSTMIHGACRLRDRKSA 483

Query: 121 LE-LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            E L H L  G L+ D VTYS++I+   N G +  A  +   M  +   P+V  F +LI 
Sbjct: 484 EEFLKHMLDEG-LIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIK 542

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEIS--LNSLPSF 229
           G+    +  KV+EL+ +M  K++  D+ I+S I   L+A NE    L S+P F
Sbjct: 543 GYGAKGDTEKVLELIREMTAKDIALDSKIISTIYTCLVANNEGKALLQSVPGF 595



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +++ A+ L  EM   GI+P+VV+++ L  G  +  + E   K+F+EM   G
Sbjct: 154 LIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRG 213

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  ID LC+ G + ++ ++   +     E ++  Y+ LI+ +CK G ++ A+
Sbjct: 214 IEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAM 273

Query: 122 ELFHS-LPRGVLV------------------------------------ADVVTYSIMIH 144
            L ++ L +GV +                                     +VVT++ +IH
Sbjct: 274 SLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIH 333

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL   G+M +A  +   M EN  A N++TF  LI G +R+++  K +EL+ +M    + P
Sbjct: 334 GLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEP 393

Query: 205 DASIVSIVVDLLAK 218
           D+   SI+++   K
Sbjct: 394 DSFTYSILINGFCK 407



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 109/209 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C  +    A+ L  +M + G++PDVV + TL  GL +   V++A +L  EM   G
Sbjct: 119 LMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESG 178

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  + G CK G      ++F  +     E D+  Y+ LID LC+ G+++ A 
Sbjct: 179 IEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKAT 238

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    L  +VVTY+++I+ +  +G + +A  L  +M E  VA + +T+ TLI G 
Sbjct: 239 QVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGL 298

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
             + E  + + LL +M     M + ++V+
Sbjct: 299 SGVLEMDEAMGLLEEMIHGETMVEPNVVT 327



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           +P  V + TL   L    +  +A  L  +MQ  GV  D  TY   I GLC    + ++VE
Sbjct: 110 RPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVE 169

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           L R +     E ++  YSCL+ G CK+GR E   ++F  +    +  DVV Y+ +I  L 
Sbjct: 170 LLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLC 229

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            +G++ KA  +   M E  + PNV+T+  LI+   +     + + L + M EK V  DA
Sbjct: 230 REGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDA 288



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 38/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI---------------- 44
           +LIN  CK   ++ A++L + ML KG+  D V +NTL  GL  +                
Sbjct: 258 VLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHG 317

Query: 45  ---------------------HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
                                 ++ +AF++ D M  +G A +  T+ + I GL +   + 
Sbjct: 318 ETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVK 377

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           +++EL   +     E D   YS LI+G CK  +++ A  L   + R  +  ++V Y  ++
Sbjct: 378 KAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLL 437

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L   G M++A + F +M +N    +V+ + T+IHG  R+ +     E L  M ++ ++
Sbjct: 438 AALCEQGMMEQARNFFDEMHKNCKL-DVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLI 496

Query: 204 PDASIVSIVVDLLAKN 219
           PD+   S+++++ A +
Sbjct: 497 PDSVTYSMLINMFANS 512



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 73/151 (48%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           +YT  +  LC      ++V L R ++      D+  Y  LI GLC +  ++ A+EL   +
Sbjct: 115 SYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREM 174

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  +VV YS ++ G    G+ +    +F +M    + P+V+ +  LI    R  + 
Sbjct: 175 CESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKV 234

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            K  +++ KM E+ + P+    +++++ + K
Sbjct: 235 KKATQVMDKMMERGLEPNVVTYNVLINSMCK 265



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRI------------LKCELDIQAYSCLIDGLCKS 114
           R    F+  L + G    S  L R LR+            L    D  +Y+ ++  LC+ 
Sbjct: 32  RRAAPFLAVLLRRGRAEASARLNRLLRLVPLPESPALLSSLPSVRDAVSYNTVLAALCRQ 91

Query: 115 GR-LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           G  L+ AL L   +         V+Y+ ++  L  + +  +A  L  DM+ + V P+V+T
Sbjct: 92  GGCLDAALFLLRVMAHETR-PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVT 150

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +GTLI G     +  K +ELL +M E  + P+  + S ++
Sbjct: 151 YGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLL 190


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 113/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+ K    +    LY +M   G+ P++  +N+L        ++  AFK+FDE+ + 
Sbjct: 182 IMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKR 241

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  TY I I GLC+ G + ++  L   ++        + ++ L+DGLC +G+L+ A
Sbjct: 242 GVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKA 301

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     L    L   +VTY+I+I G    G      +L  +ME+  ++P+ +T+  L++ 
Sbjct: 302 LSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNT 361

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F+R ++  K  E+ H MK   ++PD     +++
Sbjct: 362 FVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLI 394



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I  +C+N  +     L ++M + G+ P+V I+  L         +++A  +F  M   
Sbjct: 112 ITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDL 171

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+AA+   YTI I+G  K GY  +  EL++ ++++    ++  Y+ LI   C+ G+L +A
Sbjct: 172 GLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLA 231

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  + +  +  + VTY+I+I GL   GQ+ KA  L   M+   + P   TF  L+ G
Sbjct: 232 FKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDG 291

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +  K +  L K+K   + P     +I++   +K
Sbjct: 292 LCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 35/259 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC++ ++  A  ++ E+  +G+  + V +N L  GL    QV +A  L + M+R  
Sbjct: 218 LITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAH 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
           +   TRT+ + +DGLC  G + +++     L+++     +  Y+ LI G  K G      
Sbjct: 278 INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVS 337

Query: 117 ------------------------------LEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                         +E A E+FH + R  LV D  TY ++IHGL
Sbjct: 338 ELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL 397

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M +A  L+  M E  + PN + + T+I+G+ +     K ++ L +M +  V P+ 
Sbjct: 398 CIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNV 457

Query: 207 SIVSIVVDLLAKNEISLNS 225
           +     + +L K+  S+ +
Sbjct: 458 ASYISTIQILCKDGKSIEA 476



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQRD 60
           +IN   +++ +E +L+ +  M+ KG  P     N     L +   ++R +  F E + R 
Sbjct: 44  VINASLQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR- 102

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  ++ I I   C+NG + +  EL   +  +    ++  Y+ LI+  C++G ++ A
Sbjct: 103 -TQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQA 161

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L A+   Y+IMI+G +  G      +L+  M+   V PN+ T+ +LI  
Sbjct: 162 KVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITE 221

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
           + R  + S   ++  ++ ++ V  +A   +I++  L  K ++S
Sbjct: 222 YCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVS 264


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 114/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY K   I+ AL ++  + + G++P VV +N+L  GL +  Q+E A  + +EM  +G
Sbjct: 303 ILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANG 362

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + R+YT   +G  + G + ++  +F+ ++     +DI AY  L+   CKSG ++ A 
Sbjct: 363 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAA 422

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    L  + +TY  M+ G    G++ KA DL  DM+++    + I + + I   
Sbjct: 423 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKAC 482

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R  +  +V E L  M+EK +  +A   + ++
Sbjct: 483 FRSGDTEEVTETLAVMREKKLEVNARTYTTLI 514



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 98/200 (49%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + K   +  AL++  EM   G+ P+ +I+  +  G         AFK++++M   G+  D
Sbjct: 202 FTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPD 261

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
              Y I +   CK G + +++ +   +   +    I+ Y+ ++DG  K G ++ ALE+F 
Sbjct: 262 IVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFD 321

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    L   VV+Y+ ++ GL    QM+ A  +  +M  N V PN  ++  L  G+ R  
Sbjct: 322 RIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAG 381

Query: 186 EPSKVIELLHKMKEKNVMPD 205
           +  K   +  +MK++N+  D
Sbjct: 382 DVEKAFGMFQRMKKENLAID 401



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 110/234 (47%), Gaps = 35/234 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++GY +  +   A  ++ +M+S G+KPD+VI+N L     +  ++++A  + + ++ +
Sbjct: 232 MIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEAN 291

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK------- 113
            +     TYT  +DG  K G I +++E+F  ++       + +Y+ L+ GL K       
Sbjct: 292 RLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENA 351

Query: 114 ----------------------------SGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                       +G +E A  +F  + +  L  D+V Y  ++  
Sbjct: 352 RLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKA 411

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
               G M +A ++F  + +  +  N IT+ T++ G+ R  E SK  +LL+ M++
Sbjct: 412 CCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQK 465



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 108/236 (45%), Gaps = 14/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++  YC+   +E    L ++M  +G + ++ ++ T+  G  EI   E+    F  ++  G
Sbjct: 128 IVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    TY   +    K G + +++++   +       +   Y+ ++DG  + G    A 
Sbjct: 188 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAF 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +++  +    L  D+V Y+I++H     G+MDKA  +  ++E N + P + T+ +++ G+
Sbjct: 248 KVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGY 307

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           ++     K +E+  ++K   + P                +S NSL S     RQ E
Sbjct: 308 VKGGNIQKALEVFDRIKTAGLRPGV--------------VSYNSLLSGLAKARQME 349



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ + ++ E  L+ +  + + G+ P    +  +     +   + +A  + +EM + G
Sbjct: 163 VLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHG 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +   Y + +DG  + G    + +++  +     + DI  Y+ L+   CK+GR++ AL
Sbjct: 223 VSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKAL 282

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++    L+  + TY+ ++ G    G + KA ++F  ++   + P V+++ +L+ G 
Sbjct: 283 GVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGL 342

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +      +L++M    V+P+    + + +  A+
Sbjct: 343 AKARQMENARLMLNEMLANGVVPNERSYTALTEGYAR 379



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 101/218 (46%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y + +++EGA+    EMLS+GI+ +  +  ++  G       E A   F++ + + 
Sbjct: 58  LIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAEN 117

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +      Y   +   C+ G + E+VE L   +     + ++  Y+ +++G  +    E  
Sbjct: 118 LVPGGIVYNSIVQAYCQAGNM-ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKC 176

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  FH L    L     TY  ++      G M KA D+  +M+++ V+PN + +  ++ G
Sbjct: 177 LSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDG 236

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R  + +   ++   M    + PD  I +I+V    K
Sbjct: 237 YARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCK 274



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/213 (16%), Positives = 94/213 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY      E A + + +  ++ + P  +++N++     +   +E    L  +M+ +G
Sbjct: 93  IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG 152

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   YT  ++G  +     + +  F  L+          Y C++    K+G +  AL
Sbjct: 153 FQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKAL 212

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  +  + + Y++++ G    G    A  ++ DM    + P+++ +  L+H F
Sbjct: 213 DILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAF 272

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     K + +L  ++   ++P     + ++D
Sbjct: 273 CKAGRMDKALGVLENIEANRLLPTIETYTSILD 305



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/219 (18%), Positives = 93/219 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y ++ +   A   +  M +  IKP+V I+ +L     E   +E A    +EM   
Sbjct: 22  LLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQ 81

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   +   I G    G    +   F   +          Y+ ++   C++G +E  
Sbjct: 82  GIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETV 141

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +       ++  Y+ +++G       +K    F  ++   ++P   T+G ++  
Sbjct: 142 EALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKL 201

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +    +K +++L +M +  V P+  I ++++D  A+ 
Sbjct: 202 FTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARG 240



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 35/216 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K +++E A  + +EML+ G+ P+   +  L  G      VE+AF +F  M+++ 
Sbjct: 338 LLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKEN 397

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL--------RILKCEL-------------- 99
           +A D   Y   +   CK+G +  + E+F+ +        RI  C +              
Sbjct: 398 LAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKAR 457

Query: 100 ----DIQAYSCLIDGLC---------KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
               D+Q +   +D +C         +SG  E   E    +    L  +  TY+ +IHG 
Sbjct: 458 DLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGW 517

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
                 D+A   +   + + +  +      L+ G I
Sbjct: 518 LAAADPDQAISCYEQAKASGLQLDSALSNCLLSGLI 553


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G C+ ++++ A  +  EM  +G  PDVV +N+   GL +  +V+ A K    M   
Sbjct: 152 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP-- 209

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  +YT  I+GLCK+G +  +  +   +    C  D+  YS LIDG CK G +E A
Sbjct: 210 -VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERA 268

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L  S+ +     ++V Y+ ++  L+  G + KA D+ ++ME     P+V+++   I G
Sbjct: 269 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 328

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLL 216
             +     K   +  +M E+   P+AS  S ++VD+L
Sbjct: 329 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDIL 365



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK +    A+ L  EM  KG  P++  +N +  GL E  +++ A K+ +EM   G
Sbjct: 118 IVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 177

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY  FI GLCK   + E+ +    + +     D+ +Y+ +I+GLCKSG L+ A 
Sbjct: 178 YFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTP---DVVSYTTVINGLCKSGDLDSAS 234

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       DVVTYS +I G    G++++A  L   M +    PN++ + +L+   
Sbjct: 235 RMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGAL 294

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            R+    K  ++L +M+ +   PD    +  +D L K E
Sbjct: 295 HRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAE 333



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 45/274 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  E+E A+ L   ML  G +P++V +N+L   L  +  + +A  +  EM+R G
Sbjct: 255 LIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRG 314

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE----------LDIQAYSCLIDGL 111
              D  +Y   IDGLCK   + ++  +F  +    C           +DI  Y+ L+DGL
Sbjct: 315 FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGL 374

Query: 112 CKSGRLEIALELF----------------------HSLPRGVLVA-------------DV 136
           CK GR + A  LF                      H   R +  A             +V
Sbjct: 375 CKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNV 434

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VT++I++HGL  D ++  A  + L M +    P+ +T+GTL+    +  + +  +EL  +
Sbjct: 435 VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEE 494

Query: 197 MKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
             +   +PD    S ++  L    ++  +   FT
Sbjct: 495 AVKGGCVPDVVTYSALITGLVHENMAEEAYLLFT 528



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C++ ++E A  L   M   G  PD  I+N L  G  +     +AFK   EM ++
Sbjct: 47  ILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKN 106

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  TYT  +DGLCK     ++V+L   +R   C  +I  Y+ +++GLC+  +L+ A
Sbjct: 107 HCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEA 166

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       DVVTY+  I GL    ++D+A      M    V P+V+++ T+I+G
Sbjct: 167 KKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVING 223

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +      +L  M  +   PD    S ++D   K 
Sbjct: 224 LCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKG 262



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L++G CK    + A  L+S++L + I +PDV  +N +     +  Q+++A ++  +M  
Sbjct: 369 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 428

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
                +  T+ I + GLC +  + ++  +  T+       D   Y  L+D +CK G+   
Sbjct: 429 KN-CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAA 487

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALELF    +G  V DVVTYS +I GL ++   ++A+ LF  + E    P+  T G L  
Sbjct: 488 ALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHR 547

Query: 180 GFIRINEPSKV 190
               +N+P K 
Sbjct: 548 KLKLLNKPRKA 558



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 88/193 (45%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G + +V  +N L + L   H+ ++A  +F EM       D  T+ I + GLC++  + ++
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +L   ++ + C  D   Y+ LI G  K+     A +    + +   +  VVTY+ ++ G
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L    +   A  L  +M +   +PN+ T+  ++ G     +  +  ++L +M  +   PD
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 206 ASIVSIVVDLLAK 218
               +  +  L K
Sbjct: 182 VVTYNSFIKGLCK 194



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 62/129 (48%)

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
           E ++  Y+ L+  L +  R + A  +F  +       D  T++I++ GL    Q++KA  
Sbjct: 4   EHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARK 63

Query: 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           L   M+E    P+   +  LI G+ +  +  +  + L +M + + +P     + +VD L 
Sbjct: 64  LLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLC 123

Query: 218 KNEISLNSL 226
           K E + +++
Sbjct: 124 KAERTRDAV 132


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 112/216 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK   +E A +L  +M+  G  PDVV +NT+  GL +  +VE A  LF+EM+R 
Sbjct: 85  VIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERL 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   + R++   I GLC+   I ++ ++F  +       D  +Y  LIDGL K+G+L  A
Sbjct: 145 GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    +    VTY+++IHG+     +D+A +LF  M      P+  TF  LI  
Sbjct: 205 YKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  +  +   LL +M +   +PD    S ++  L
Sbjct: 265 HCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C     + A  L+++M  +G  P  V +N +     +   +E A  L  +M  DG
Sbjct: 51  LIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   +DGLCK+G + E++ LF  +  L C  + ++++ +I GLC+  +++ A 
Sbjct: 111 HVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQAC 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +    +  D  +Y I+I GL   G++++A+ LF  M ++ + P+ +T+  +IHG 
Sbjct: 171 QVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGM 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  + +EL   M+ K   P     +I++D   K 
Sbjct: 231 CLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKR 268



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 104/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G C    ++ AL L+  M SKG +P     N L     +  +++ AF+L   M  D
Sbjct: 225 VVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDD 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+  I GLC    + ++  L   +   +C+  +   + LI GLCK+GR++ A
Sbjct: 285 GHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+  ++       DVVTY+ ++HG    GQ ++A +L  DM    +APNV+T+  L+ G
Sbjct: 345 REVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             + N   +   +  +MK     P+
Sbjct: 405 LCKANRLPEACGVFAQMKSSGCAPN 429



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+  +I+ A  ++ EM ++ I PD   +  L  GL +  ++  A+KLF  M   G
Sbjct: 156 IILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + I G+C    + E++ELF+++R   C      ++ LID  CK G+++ A 
Sbjct: 216 ITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAF 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V DVVTYS +I GL +  ++D A  L  DM +    P V+T  TLIHG 
Sbjct: 276 RLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  E+L  M      PD
Sbjct: 336 CKAGRIKEAREVLDAMVSSGQSPD 359



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 115/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  ++  A +L+ ++L  G+ P  V + +L  GL   +  + A +LF +M R 
Sbjct: 15  ILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRR 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY + ID  CK G + E+ +L + +       D+  Y+ ++DGLCKSGR+E A
Sbjct: 75  GCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF+ + R     +  +++ +I GL    ++D+A  +F +ME   + P+  ++G LI G
Sbjct: 135 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDG 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  + ++  +L  +M +  + P A   ++V+
Sbjct: 195 LAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI 227



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+  +E AL L++EM   G  P+   HNT+ +GL +  ++++A ++F EM+   
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLEI 119
           +  D+ +Y I IDGL K G + E+ +LFR  R+L   +   A  Y+ +I G+C +  L+ 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFR--RMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALELF S+          T++I+I      G+MD+A  L   M ++   P+V+T+ TLI 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G   I        LL  M ++   P     + ++  L K
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 111/226 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK  +++ A  L   M   G  PDVV ++TL  GL  I +V+ A  L ++M + 
Sbjct: 260 ILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKR 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  T    I GLCK G I E+ E+   +       D+  Y+ L+ G C++G+ E A
Sbjct: 320 QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERA 379

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L  +VVTY+ ++ GL    ++ +A  +F  M+ +  APN+ T+  LI G
Sbjct: 380 RELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILG 439

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           F    +    ++L  +M    + PD  +   +   L K+  S  +L
Sbjct: 440 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARAL 485



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 99/198 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C    ++ A +L  +M+ +  KP VV  NTL  GL +  +++ A ++ D M   G
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY   + G C+ G    + EL   +       ++  Y+ L+ GLCK+ RL  A 
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       ++ TY+ +I G  + GQ+D    LF +M    ++P+ + +GTL    
Sbjct: 416 GVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475

Query: 182 IRINEPSKVIELLHKMKE 199
            +    ++ +E+L + +E
Sbjct: 476 CKSGRSARALEILREGRE 493



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 99/197 (50%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  + + PD   +  L  GL +  ++  A  LF ++   GV   T  YT  I GLC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
             ++ ELF  +    C      Y+ +ID  CK G LE A +L   +     V DVVTY+ 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++ GL   G++++A  LF +ME     PN  +  T+I G  + ++  +  ++ H+M+ ++
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 202 VMPDASIVSIVVDLLAK 218
           + PD+    I++D LAK
Sbjct: 181 IPPDSWSYGILIDGLAK 197



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   I+ A  +   M+S G  PDVV +NTL  G     Q ERA +L  +M   G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  + GLCK   + E+  +F  ++   C  ++  Y+ LI G C +G+++  L
Sbjct: 391 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL 450

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           +LF  +    +  D V Y  +   L   G+  +A ++  +  E+
Sbjct: 451 KLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES 494



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 64/135 (47%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D  +Y  LIDGL K+G+L  A +LF  L    +    V Y+ +IHGL      D A +LF
Sbjct: 9   DSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 68

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            DM      P+ +T+  +I    +     +  +L+ KM E   +PD    + V+D L K+
Sbjct: 69  ADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKS 128

Query: 220 EISLNSLPSFTVHER 234
                +L  F   ER
Sbjct: 129 GRVEEALLLFNEMER 143


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  + + AL L+ EM  +GI P+ +I++ +  GL +  ++  A +LF +M+  
Sbjct: 203 ILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRAS 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY + ++G CK+GY+ ++  L + L      L +  Y CLI+GL ++ R E A
Sbjct: 263 GCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEA 322

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              +  + R  +  DV+ Y+IMI GL  +G++ +A  L  +M E  + P+ I +  LI G
Sbjct: 323 HMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKG 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F  +    +   L  ++ + +  P+    SI++  + KN
Sbjct: 383 FCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKN 421



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G  +   +  AL L  EM  +G++PD + +N L  G  ++  ++ A  L  E+ + 
Sbjct: 343 IMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKH 402

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY+I I G+CKNG I ++  +F+ +  L C   +  ++ LI+GLCK+ RLE A
Sbjct: 403 DCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462

Query: 121 LELFHSL-----PRGVL--------VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LF+ +     P   L        V D+ +  +M+  L   G + KA+ L + + ++ V
Sbjct: 463 RLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGV 522

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
            P++ T+  LI+GF +    +   +L  +M+ K  MPD+     ++D L +   + ++L 
Sbjct: 523 LPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALE 582

Query: 228 SFTVHERQEEVDESNV 243
            F    ++  V ES+ 
Sbjct: 583 IFEQMVKKGCVPESST 598



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 102/192 (53%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y++ML   + PDVV +  L  GL +  + + A  LFDEM   G+  +   Y+I + 
Sbjct: 182 ALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLS 241

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC+   I ++  LF  +R   C  D+  Y+ L++G CKSG L+ A  L   L +   + 
Sbjct: 242 GLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHIL 301

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V+ Y  +I+GL+   + ++AH  +  M    + P+V+ +  +I G  +    ++ + LL
Sbjct: 302 GVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLL 361

Query: 195 HKMKEKNVMPDA 206
            +M E+ + PD 
Sbjct: 362 GEMTERGLRPDT 373



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           ILI G CKN  I  A +++ EM   G  P VV  N+L  GL + +++E A  LF +M   
Sbjct: 413 ILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIV 472

Query: 58  ----------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
                     Q      D  +  + ++ LC++G I+++ +L   L       DI+ Y+ L
Sbjct: 473 RKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNIL 532

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           I+G CK G +  A +LF  +     + D VTY  +I GLY  G+ + A ++F  M +   
Sbjct: 533 INGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGC 592

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHK 196
            P   T+ T++    R N  S  + +  K
Sbjct: 593 VPESSTYKTIMTWSCRENNISLALSVWMK 621



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 37  LFIG-LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95
           L IG L + +  E  +K+  E++   +   +  +++ I+   + G   ++VE F  +R  
Sbjct: 98  LIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDF 157

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            C+ D+ A++ ++  L +     +AL +++ + +  L  DVVTY I+IHGL    +   A
Sbjct: 158 DCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDA 217

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
             LF +M +  + PN I +  ++ G  +  +      L  KM+      D    +++++ 
Sbjct: 218 LVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNG 277

Query: 216 LAKN 219
             K+
Sbjct: 278 FCKS 281



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 13/194 (6%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV----ERAFKLFDEMQRDGVAADTRT 68
           E A  LY ++L +     + I +  F  L E +      E+A + F  M+      D   
Sbjct: 106 ENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFA 165

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHS 126
           + + +  L +    + ++ ++   ++LKC L  D+  Y  LI GLCK+ + + AL LF  
Sbjct: 166 FNLILHFLVRKEAFLLALAVYN--QMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDE 223

Query: 127 LP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR-- 183
           +  RG+L   ++ YSI++ GL    ++  A  LF  M  +    ++IT+  L++GF +  
Sbjct: 224 MTDRGILPNQII-YSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSG 282

Query: 184 -INEPSKVIELLHK 196
            +++   +++LL K
Sbjct: 283 YLDDAFTLLQLLTK 296



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 49/264 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL-----------------------F 38
           LI+G  +    E AL ++ +M+ KG  P+   + T+                       F
Sbjct: 567 LIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDF 626

Query: 39  IGL-----------FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
            G            F+  +++ A +   EM       D   YTIF+ GL +     E+  
Sbjct: 627 RGWEDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFA 686

Query: 88  LFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELF-HSLPRGVLVADVVTYSIMIH 144
           +F  L+  K  ++I + SC  LI  LC    L++A+++F  +L RG  +   +   ++ +
Sbjct: 687 IFSVLKDFK--MNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLCN 744

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L+ D + D    LFL     A    +  F       I  NE    ++ LH+++ +    
Sbjct: 745 LLHLDRKDDA---LFLANRMEASGTELCIFIGANCKDIPTNESDLPMQ-LHRLQMQE--- 797

Query: 205 DASIVSIVVDLLAKNEISLNSLPS 228
              +VSI  DLL        S+P+
Sbjct: 798 ---LVSITEDLLDPARTLSPSIPT 818


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + E A  +  EM+ KG  PD   +  +   L +  +VE++F LF EM+R GV  D 
Sbjct: 428 CGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDV 487

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++   F  +R + C  ++  Y+ L+    KS +L  A ++FH 
Sbjct: 488 YTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHR 547

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + VTYS +I GL   G++ KA +++  +                +   +APN
Sbjct: 548 MVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPN 607

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G LI G  +  + S   ELL  M      P+  +   ++D   K
Sbjct: 608 VVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCK 655



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 126/244 (51%), Gaps = 16/244 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           L++ Y K+K++  A +++  M+     P+ V ++ L  GL +  ++++A ++++++    
Sbjct: 528 LLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTS 587

Query: 58  ---QRD---------GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
              + D          +A +  TY   IDGLCK   + ++ EL   +    CE +   Y 
Sbjct: 588 GNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYD 647

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK G+++ A E+F  + +   +  V TY+ +I  ++ DG++D A  +  +M  +
Sbjct: 648 ALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLND 707

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +  PNV+T+  +I G  ++ E  K + LL  M+EK   P+    + ++D L K   +  S
Sbjct: 708 SCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADAS 767

Query: 226 LPSF 229
           L  F
Sbjct: 768 LKLF 771



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK +++  A  L   ML+ G +P+ ++++ L  G  +I +++ A ++F  M + G
Sbjct: 614 LIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCG 673

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  ID + K+G +  ++++   +    C  ++  Y+ +IDGL K G +E AL
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKAL 733

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L   +       +VVTY+ +I GL   G+ D +  LF  M     APN +T+  LI+
Sbjct: 734 NLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLIN 791



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I+ A  ++  M   G  P V  + +L   +F+  +++ A K+  EM  D 
Sbjct: 649 LIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDS 708

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGL K G I +++ L   +    C  ++  Y+ LIDGL K+G+ + +L
Sbjct: 709 CNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASL 768

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       + VTY ++I+     G +D+AH L  +M+      ++  +   + GF
Sbjct: 769 KLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF 828

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  + LL +M+    +P A +  +++D  +K
Sbjct: 829 SKKFIAS--LGLLEEMESHETVPIAPVYGMLIDSFSK 863



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 36/230 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K  EIE ALNL S M  KG  P+VV +  L  GL +  + + + KLF +M   G
Sbjct: 719 MIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKG 778

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--------------- 106
            A +  TY + I+  C  G + E+  L   ++       +Q Y C               
Sbjct: 779 CAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGL 838

Query: 107 ------------------LIDGLCKSGRLEIALELFHSL---PRGVLVADVVTYSIMIHG 145
                             LID   K+GRLE ALEL   L      + +     Y+ +I  
Sbjct: 839 LEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQA 898

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           L    Q+++A  L+ +M    + P++I F +L+ G I +N+  + ++L +
Sbjct: 899 LCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCY 948



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 41/258 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K K+      + + M+++G  P+  + N+L  G         A+KLF+ M   G
Sbjct: 312 LLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCG 371

Query: 62  VAADTRTYTIFIDGLC-----KNGYIVESVE-LFRTLRILKCEL---------------- 99
                  Y IFI  +C      N  +++ VE ++  +    C L                
Sbjct: 372 SPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVG 431

Query: 100 -------------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
                              D   Y+ +I  LC++ ++E +  LF  + R  +  DV TY+
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           I+I      G +++A   F +M     +PNV+T+  L+H +++  +  +  ++ H+M + 
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDA 551

Query: 201 NVMPDASIVSIVVDLLAK 218
              P+A   S ++D L K
Sbjct: 552 ACYPNAVTYSALIDGLCK 569



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C++   + AL     +   G +P  V +N L   L    QVE  F++  EM   
Sbjct: 174 VLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSAS 233

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T   F   LCK G   +++ +          LD    + +I GL ++     A
Sbjct: 234 GFCMDRSTIGYFAQALCKVGRWADALNMLEKEDF---NLDTVLCTQMISGLMEASLFNEA 290

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +   H +     + +VVTY  ++ G     Q      +   M      PN   F +L+HG
Sbjct: 291 MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHG 350

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +    + +   +L ++M      P     +I +  +   E
Sbjct: 351 YCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQE 390



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C   ++E A  LY+EM  KGI PD+++  +L  GL E+++ + A +L      +G
Sbjct: 895 LIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEG 954

Query: 62  V 62
           V
Sbjct: 955 V 955


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK ++   AL L   M + G    VV + TL  GL +   ++ A  L  +M   G
Sbjct: 16  LIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
            A +  TYT  IDGLCK     ++++  + +    CE D+  Y+ LI GLC + R++ A 
Sbjct: 76  CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAG 135

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +     + DVVTY+  I GL   G++DK  ++  +M+   ++P+V+TF ++I G
Sbjct: 136 LVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISG 195

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + N      ++   M E+  +PD+   SI++D L++
Sbjct: 196 LCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 233



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 2/202 (0%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M S+  + D  I+NTL  GL +  +   A +L   M  +G  A   TYT  IDGLCK+G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +  +  L + +    C  ++  Y+ LIDGLCK+ R   A++    + R     D+VTY+ 
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 142 MIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           +IHGL    +MD A  +  + M E+   P+V+T+ T I G  +  +  K +E+L +M   
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 180

Query: 201 NVMPD-ASIVSIVVDLLAKNEI 221
            + PD  +  SI+  L   N I
Sbjct: 181 GISPDVVTFCSIISGLCKANRI 202



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G CK  +++  L +  EM   GI PDVV   ++  GL + ++++ AF++F  M   G
Sbjct: 157 FISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERG 216

Query: 62  VAADTRTYTIFIDGLC----------------KNGYIVESVELFRTLRIL---------- 95
              D+ TY+I +D L                 K+G+   S      +  L          
Sbjct: 217 CVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESAS 276

Query: 96  ---------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                     C +++  ++  I  LC+SG+  +A  +   +     + ++++Y+ +I GL
Sbjct: 277 WAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGL 336

Query: 147 YNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-MP 204
              G +D A  L   M +     P+VI F TLI GF +    S+  +LL +MK KN+ +P
Sbjct: 337 CKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVP 396

Query: 205 DASIVSIVVDLLAK 218
           D    + ++D  +K
Sbjct: 397 DVVTYNTMIDGQSK 410



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 1/219 (0%)

Query: 2   LINGYC-KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G C  N+  +  L L   M+  G  PDVV +NT   GL +  ++++  ++ +EM R 
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  T+   I GLCK   I ++ ++F+ +    C  D   YS ++D L ++ RL+  
Sbjct: 181 GISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTV 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +    A   TY+ +IH L   G ++ A   +    E      V T    I  
Sbjct: 241 EEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGA 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R  +      +L  M E   +P+    + V+D L K+
Sbjct: 301 LCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKS 339



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+   +  +IE A   Y + +  G   +V  HN     L    +   A  +   M   G
Sbjct: 262 LIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESG 321

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRT-LRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              +  +Y   IDGLCK+G + ++ +L R  L    C+ D+  ++ LI G CK+GRL  A
Sbjct: 322 SLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQA 381

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
            +L   +  + + V DVVTY+ MI G    G + +A  L  +M+
Sbjct: 382 QQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQ 425



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 37/234 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   I+ A  ++  ML +G  PD + ++ +   L   ++++   ++ + M + G
Sbjct: 192 IISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ------------------- 102
             A + TY   I  L + G I  +   +       C +++                    
Sbjct: 252 HYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAK 311

Query: 103 ----------------AYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHG 145
                           +Y+ +IDGLCKSG ++ A +L    L  G    DV+ ++ +I G
Sbjct: 312 NILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISG 371

Query: 146 LYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
               G++ +A  L  +M+ +N   P+V+T+ T+I G  +     +   LL +M+
Sbjct: 372 FCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQ 425



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK-PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G+CK   +  A  L  EM +K I  PDVV +NT+  G  +   +++A  L +EMQ  
Sbjct: 368 LISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAV 427

Query: 61  G 61
           G
Sbjct: 428 G 428


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-----------------KPDVVIHNTLFIGLFEI 44
           LI+G+CK  E E A  +Y+ M +  +                 +P+VV +  L  GL + 
Sbjct: 233 LIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKA 292

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           H+V+ A  L + M  +G   +   Y   IDG CK G + E+ E+F  +    C  ++  Y
Sbjct: 293 HKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTY 352

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           S LID L K  RL++AL++   +       +VV Y+ M+ GL   G+ D+A+ L L MEE
Sbjct: 353 SSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEE 412

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               PNV+T+  +I GF +     + +ELL  M  K   P+
Sbjct: 413 KGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPN 453



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 17/234 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K +++  A  ++  MLS G  P++V +  L  G  +  + E+A +++  M+ D 
Sbjct: 198 LIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK 257

Query: 62  V-----------------AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           V                   +  TY   +DGLCK   + E+ +L  T+ +  CE +   Y
Sbjct: 258 VDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIY 317

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             LIDG CK G+L+ A E+F  +       +V TYS +I  L+ D ++D A  +   M E
Sbjct: 318 DALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLE 377

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           N+ APNV+ +  ++ G  ++ +  +   L+  M+EK   P+    + ++D   K
Sbjct: 378 NSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGK 431



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 17/229 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + E A N+  EM+SKG  PD   ++ +   L    +VE+AF+LF EM+R+G+  D 
Sbjct: 98  CCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDV 157

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  +D  CK G I ++   F  ++   C  ++  Y+ LI    K+ +L  A E+F  
Sbjct: 158 YTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEM 217

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV-----------------AP 169
           +     V ++VTY+ +I G    G+ +KA  ++  M+ + V                  P
Sbjct: 218 MLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEP 277

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           NV+T+G L+ G  + ++  +  +LL  M  +   P+  I   ++D   K
Sbjct: 278 NVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCK 326



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 18/234 (7%)

Query: 5   GY-CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA 63
           GY C   ++E A  L+ EM   GI PDV  + TL     ++  +E+A   FDEMQ+DG A
Sbjct: 130 GYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCA 189

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
            +  TYT  I    K   +  + E+F  +    C  +I  Y+ LIDG CK+G  E A ++
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQI 249

Query: 124 FHSLPR-GVLVAD----------------VVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +  +    V + D                VVTY  ++ GL    ++ +A DL   M    
Sbjct: 250 YARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEG 309

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             PN I +  LI GF ++ +  +  E+  KM      P+    S ++D L K++
Sbjct: 310 CEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDK 363



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 17/234 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +CK   IE A N + EM   G  P+VV +  L     +  ++ RA ++F+ M  +G
Sbjct: 163 LLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNG 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL--------------RILKCEL---DIQAY 104
              +  TYT  IDG CK G   ++ +++  +              RI+  EL   ++  Y
Sbjct: 223 CVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTY 282

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             L+DGLCK+ +++ A +L  ++       + + Y  +I G    G++D+A ++F  M  
Sbjct: 283 GALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLG 342

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +PNV T+ +LI    +       +++L KM E +  P+  I + +VD L K
Sbjct: 343 HGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCK 396



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 111/213 (52%), Gaps = 2/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +++ A  ++++ML  G  P+V  +++L   LF+  +++ A K+  +M  + 
Sbjct: 320 LIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENS 379

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  +DGLCK G   E+  L   +    C  ++  Y+ +IDG  K+GR++  L
Sbjct: 380 CAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCL 439

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       + +TY ++I+     G +D AH L  +M++     ++  +  +I GF
Sbjct: 440 ELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF 499

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              +E    + LL ++ E   +P   +  +++D
Sbjct: 500 --SHEFVASLGLLAELSEDGSVPILPVYKLLID 530



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 6/219 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVER------AFKLFD 55
           L++ YC++ +   A  L  +M+  G +P  V++N L  G+     +        A + ++
Sbjct: 17  LVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYN 76

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   GV  +      F   LC  G   ++  + R +       D   YS +I  LC + 
Sbjct: 77  EMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNAS 136

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           ++E A +LF  + R  +  DV TY+ ++      G +++A + F +M+++  APNV+T+ 
Sbjct: 137 KVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYT 196

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            LIH +++  + S+  E+   M     +P+    + ++D
Sbjct: 197 ALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALID 235



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 95/226 (42%), Gaps = 36/226 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK  + + A  L   M  KG  P+VV +  +  G  +  +V+R  +L   M   G
Sbjct: 390 MVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKG 449

Query: 62  VAADTRTYTIFIDGLCKNG---------------YIVESVELFR------------TLRI 94
            A +  TY + I+  C  G               Y  + + ++R            +L +
Sbjct: 450 CAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGL 509

Query: 95  LKCELD-------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           L  EL        +  Y  LID   K+GRLE+ALEL   L      A   TY  +I  L 
Sbjct: 510 LA-ELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEEL-SSFSAAYQNTYVSLIESLT 567

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
              ++DKA  L+ DM      P +     LI G +R+ +  + ++L
Sbjct: 568 LACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQL 613



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 24/199 (12%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+++G  P  +I N+L            A+KL  +M   G       Y I I G+C    
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGIC---- 57

Query: 82  IVESVELFRTLRILKCELDIQAYSCLID---------------GLCKSGRLEIALELFHS 126
              S E   ++ ++   L  +AY+ +++                LC  G+ E A  +   
Sbjct: 58  ---STEDLPSMEVIG--LAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIRE 112

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +     + D  TYS +I  L N  +++KA  LF +M+ N + P+V T+ TL+  F ++  
Sbjct: 113 MMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGL 172

Query: 187 PSKVIELLHKMKEKNVMPD 205
             +      +M++    P+
Sbjct: 173 IEQARNWFDEMQQDGCAPN 191


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G  +  +++ A+ L  EM S G++PD   ++ L  G  ++ QVERA     EM+  
Sbjct: 346 LLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQ 405

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   +  +C  G + ++ +LF  +    C+LD  AYS +I G  KSG  +IA
Sbjct: 406 GMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD-RNCKLDAAAYSTMIHGAFKSGEKKIA 464

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    +    L+ D VTYSI I+     G +  A  +   M  +   P+V  F +LI G
Sbjct: 465 EEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQG 524

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLNSLPSF 229
           +    +  K++EL  +M  K+V  D  I+S +V  L    + +  L SLP F
Sbjct: 525 YGAKGDTEKILELTREMTAKDVALDPKIISTIVTSLGASIEGQKLLQSLPGF 576



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C ++    A+ L   M   G++PDVV + TL  GL +   V+ A +L +EM   G
Sbjct: 100 LMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESG 159

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  + G CK G      ++F  +     E D+  Y+ LID LC+ G+++ A 
Sbjct: 160 IEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAA 219

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  +VVTY+++I+ +  +G + +A DL  +M E  V P+V+T+ TLI G 
Sbjct: 220 RVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGL 279

Query: 182 IRINEPSKVIELLHKM--KEKNVMPDASIVSIVVDLLAK 218
             + E  + + LL +M   E  V PD    + V+  L K
Sbjct: 280 SSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCK 318



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 38/256 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  CK   +  AL+L   M  KG++PDVV +NTL  GL  + +++ A  L +EM + 
Sbjct: 239 VLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQG 298

Query: 61  --GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
              V  D  T+   I GLCK G++ +++++   +    C  ++ A++ LI GL +  +++
Sbjct: 299 ETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVK 358

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHG--------------------------------- 145
            A+EL   +    L  D  TYSI+I+G                                 
Sbjct: 359 KAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLL 418

Query: 146 --LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             + + G M +A DLF +M+ N    +   + T+IHG  +  E     E L  M ++ ++
Sbjct: 419 KAMCDQGMMGQARDLFNEMDRNCKL-DAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLI 477

Query: 204 PDASIVSIVVDLLAKN 219
           PDA   SI +++ AK+
Sbjct: 478 PDAVTYSIPINMFAKS 493



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK---GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           ++   C+   ++ AL L   M  +     +P+ + + TL   L    +  +A  L   MQ
Sbjct: 62  VLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQ 121

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             GV  D  TY   I GLC    +  +VEL   +     E ++  YSCL+ G CK+GR E
Sbjct: 122 DCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWE 181

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
              ++F  +    +  DVV Y+ +I  L   G++ KA  +   M E  + PNV+T+  LI
Sbjct: 182 SVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLI 241

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
           +   +     + ++L   M EK V PD
Sbjct: 242 NSMCKEGSVREALDLRKNMSEKGVQPD 268



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQ---RDGVAADTRTYTIFIDGLCKNGYIVESV 86
           D V +NT+   L     ++ A  L   M    R     +  +YT  +  LC +    ++V
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L R+++      D+  Y  LI GLC +  ++ A+EL + +    +  +VV YS ++HG 
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+ +    +F +M    + P+V+ +  LI    R  +  K   ++  M E+ + P+ 
Sbjct: 175 CKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNV 234

Query: 207 SIVSIVVDLLAK 218
              +++++ + K
Sbjct: 235 VTYNVLINSMCK 246



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 3/158 (1%)

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLR---ILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           D  +Y   +  LC+ G +  ++ L R +     L    +  +Y+ L+  LC   R   A+
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    +  DVVTY  +I GL +   +D A +L  +M E+ + PNV+ +  L+HG+
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +      V ++  +M  + + PD  + + ++D L ++
Sbjct: 175 CKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRH 212


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 113/213 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING+ K    +    LY +M   G+ P++  +N+L        ++  AFK+FDE+ + 
Sbjct: 182 IMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKR 241

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  TY I I GLC+ G + ++  L   ++        + ++ L+DGLC +G+L+ A
Sbjct: 242 GVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKA 301

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     L    L   +VTY+I+I G    G      +L  +ME+  ++P+ +T+  L++ 
Sbjct: 302 LSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNT 361

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F+R ++  K  E+ H MK   ++PD     +++
Sbjct: 362 FVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLI 394



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I  +C+N  +     L ++M + G+ P+V I+  L         +++A  +F  M   
Sbjct: 112 ITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDL 171

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+AA+   YTI I+G  K GY  +  EL++ ++++    ++  Y+ LI   C+ G+L +A
Sbjct: 172 GLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLA 231

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  + +  +  + VTY+I+I GL   GQ+ KA  L   M+   + P   TF  L+ G
Sbjct: 232 FKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDG 291

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +  K +  L K+K   + P     +I++   +K
Sbjct: 292 LCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 35/259 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC++ ++  A  ++ E+  +G+  + V +N L  GL    QV +A  L + M+R  
Sbjct: 218 LITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAH 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
           +   TRT+ + +DGLC  G + +++     L+++     +  Y+ LI G  K G      
Sbjct: 278 INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVS 337

Query: 117 ------------------------------LEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                         +E A E+FH + R  LV D  TY ++IHGL
Sbjct: 338 ELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL 397

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M +A  L+  M E  + PN + + T+I+G+ +     K ++ L +M +  V P+ 
Sbjct: 398 CIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNV 457

Query: 207 SIVSIVVDLLAKNEISLNS 225
           +     + +L K+  S+ +
Sbjct: 458 ASYISTIQILCKDGKSIEA 476



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQRD 60
           +IN   +++ +E +L+ +  M+ KG  P     N     L +   ++R +  F E + R 
Sbjct: 44  VINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR- 102

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  ++ I I   C+NG + +  EL   +  +    ++  Y+ LI+  C++G ++ A
Sbjct: 103 -TQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQA 161

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L A+   Y+IMI+G +  G      +L+  M+   V PN+ T+ +LI  
Sbjct: 162 KVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITE 221

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
           + R  + S   ++  ++ ++ V  +A   +I++  L  K ++S
Sbjct: 222 YCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVS 264


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  +CK  +I  A  + + +   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 139 ILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHAS 198

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 199 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLA 258

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G++ +AHDL  +M    + P+ IT+ TLI G
Sbjct: 259 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDG 318

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D  + + ++  L +   S+++
Sbjct: 319 CCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDA 363



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 175 LINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 234

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 235 MVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAH 294

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G M+ A +    M +  +  + + +  LI G 
Sbjct: 295 DLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGL 354

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
            +        ++L +M    + P+  
Sbjct: 355 CQEGRSVDAEKMLREMLSVGLKPNTG 380



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 89/171 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 209 VLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 268

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G +E A
Sbjct: 269 SLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETA 328

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + PN 
Sbjct: 329 FEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNT 379



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  + +     +++ L K    ++    
Sbjct: 62  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGF 121

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++     +G +  A  +   + +  + P+V++F TLI+G+IR
Sbjct: 122 YKEILECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIR 181

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 182 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 216


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 116/204 (56%), Gaps = 3/204 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   CK ++IE A++L   M S+ +KPDV  + TL  G+ ++  +  A K+FDEM   
Sbjct: 156 ILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVR 215

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
           GV AD   Y + IDG  K+G   +  E++  L +  C +  ++  Y+ +I+GLCK GR +
Sbjct: 216 GVVADVTCYNMLIDGFFKHGDYDKGKEIWERL-VKDCSVYPNVVTYNIMINGLCKCGRFD 274

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            +LE++  + +     D+ TYS +IHGL   G +D A  ++ ++ E+++  + +T   ++
Sbjct: 275 ESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAML 334

Query: 179 HGFIRINEPSKVIELLHKMKEKNV 202
           +GF R  +  +  EL   M ++N 
Sbjct: 335 NGFCRAGKIKESFELWMVMGKENC 358



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+C+  +I+ +  L+  M  +  +  VV +N L  GLFE  +VE A  +++ + + G
Sbjct: 333 MLNGFCRAGKIKESFELWMVMGKENCQT-VVSYNILIKGLFENGKVEEAISIWELLCKKG 391

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++ TY + I GLCKNG + +++++F+       +LD  AYS ++DGLCK GR++ A+
Sbjct: 392 CRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAI 451

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + +     D    + +I+G     +++ A + F +ME    +P ++++ TLI G 
Sbjct: 452 SIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGL 511

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLN 224
            +    S+    + +M EK   PD    S+++D L    K E++LN
Sbjct: 512 CKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALN 557



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 112/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+ +  ++E A+N + EM  KG  P +V +NTL  GL +  +   A+    EM    
Sbjct: 472 LINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKE 531

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T ++ +DGLC+   I  ++ L++       + DI  Y+ L+ GLC   +LE AL
Sbjct: 532 WKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDAL 591

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + R   V ++VT + ++ GLY     +KA +++  + ++ + P++I++   I G 
Sbjct: 592 QLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGL 651

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              +  S  IE L+    + ++P A   +I+V
Sbjct: 652 CSCSRISDAIEFLNDALNRGILPTAVTWNILV 683



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK   ++ A+++ ++M  +G K D  + N L  G     ++E A   F EM+  G
Sbjct: 437 MVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKG 496

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    +Y   I GLCK     E+    + +   + + D+   S L+DGLC+  ++E+AL
Sbjct: 497 CSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMAL 556

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+          D+  Y+I++HGL +  +++ A  L+  M+ +   PN++T  TL+ G 
Sbjct: 557 NLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGL 616

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ +  K  E+   + +  + PD
Sbjct: 617 YKVRDYEKASEIWDCILKDGLHPD 640



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I  Y KNK    AL+ +  M    G KP V  +NTL     E+++ +RA       +  
Sbjct: 86  VIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESM 145

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ + +TY I I   CK   I +++ L   +     + D+ +Y  LI+G+ K G L  A
Sbjct: 146 DVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGA 205

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
           L++F  +    +VADV  Y+++I G +  G  DK  +++  + ++ +V PNV+T+  +I+
Sbjct: 206 LKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMIN 265

Query: 180 GFIRINEPSKVIELLHKM----KEKNVMPDASIV 209
           G  +     + +E+  +M    +EK++   +S++
Sbjct: 266 GLCKCGRFDESLEIWERMTKNEREKDMFTYSSLI 299



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G  +N ++E A++++  +  KG +P+   +  L  GL +  ++ +A K+F E +  
Sbjct: 366 ILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDG 425

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D   Y+  +DGLCK G + E++ +   +     +LD    + LI+G  ++ +LE A
Sbjct: 426 PGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDA 485

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F  +        +V+Y+ +I GL    +  +A+    +M E    P++IT   L+ G
Sbjct: 486 INFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDG 545

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  +    + L  +  +K   PD ++ +I++
Sbjct: 546 LCQEKKIEMALNLWQQALDKGFKPDITMYNILM 578



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 2/149 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C+ K+IE ALNL+ + L KG KPD+ ++N L  GL  + ++E A +L+  M+R 
Sbjct: 541 LLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRS 600

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T    ++GL K     ++ E++  +       DI +Y+  I GLC   R+  A
Sbjct: 601 TCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDA 660

Query: 121 LELFH-SLPRGVLVADVVTYSIMIHGLYN 148
           +E  + +L RG+L    VT++I++    N
Sbjct: 661 IEFLNDALNRGIL-PTAVTWNILVRAAVN 688



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 89/187 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK +    A +   EML K  KPD++  + L  GL +  ++E A  L+ +    G
Sbjct: 507 LIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKG 566

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y I + GLC    + ++++L+  ++   C  ++   + L++GL K    E A 
Sbjct: 567 FKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKAS 626

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  + +  L  D+++Y+I I GL +  ++  A +   D     + P  +T+  L+   
Sbjct: 627 EIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILVRAA 686

Query: 182 IRINEPS 188
           +     S
Sbjct: 687 VNFRTSS 693



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 73  IDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
           I    KN    ++++ F+ ++ I  C+  +++Y+ L++   +    + A           
Sbjct: 87  IKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMD 146

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  ++ TY+I+I       Q++KA  L   M    + P+V ++GTLI+G +++ +    +
Sbjct: 147 VSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGAL 206

Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
           ++  +M  + V+ D +  ++++D
Sbjct: 207 KVFDEMSVRGVVADVTCYNMLID 229


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 133/245 (54%), Gaps = 4/245 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+  +I+ +  L+  M+ K    +VV +N    GLFE  +VE A  +++ ++R G
Sbjct: 331 LLNGFCRAGKIKESFELWV-MMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD+ TY + I GLCKNG++ +++++ +  +    +LD  AYS ++DGL K GR++ AL
Sbjct: 390 SGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEAL 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + H + +          + +I+G     ++++A   F +ME    +P V+++ TLI+G 
Sbjct: 450 GIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGL 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
            +    S     + +M EK+  PD    S+++D L +    +++LN      V   + +V
Sbjct: 510 CKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDV 569

Query: 239 DESNV 243
              N+
Sbjct: 570 TMHNI 574



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 4/229 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+ +  ++E A+  + EM +KG  P VV +NTL  GL +  +   A+    EM    
Sbjct: 470 LINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKD 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY++ +DGLC+   I  ++ L+R + +   E D+  ++ L+ GLC +G++E AL
Sbjct: 530 WKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+ ++ +   + ++VT++ ++ GLY   + + A  ++  M +N   P++I++   + G 
Sbjct: 590 LLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
                 S  I L     +  ++P     SI   +L +  + L  L S +
Sbjct: 650 CSCGRISDGIALFDDALKNGILP----TSITWYILVRAVLKLGPLDSLS 694



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING  K+ ++  AL ++ EM  +G+ PDV+ +N +  G F+     +  ++++ + +  
Sbjct: 190 VINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGS 249

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TY + I+GLCK G   ES+E++  ++  +CE+D+  YS LI GLC  G ++ A
Sbjct: 250 CVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGA 309

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
           +E++  + +  +V DVVTY+ +++G    G++ ++ +L++ M +EN    NV+++   I 
Sbjct: 310 VEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKEN--CHNVVSYNIFIR 367

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G     +  + I +   ++ +    D++   +++  L KN
Sbjct: 368 GLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKN 407



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 1/202 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI    K ++   A  L   M SK +KPDV  + T+  G+ +   +  A ++FDEM   
Sbjct: 154 ILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFER 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEI 119
           G+  D   Y I IDG  K G  V+  E++  L    C   ++  Y+ +I+GLCK GR + 
Sbjct: 214 GLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDE 273

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           +LE++  + +     D+ TYS +I GL + G +D A +++ +M + +V  +V+T+  L++
Sbjct: 274 SLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLN 333

Query: 180 GFIRINEPSKVIELLHKMKEKN 201
           GF R  +  +  EL   M ++N
Sbjct: 334 GFCRAGKIKESFELWVMMGKEN 355



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CKN  +  AL +  E    G K D   ++++  GL +  +V+ A  +  +M + 
Sbjct: 399 VLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKY 458

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G           I+G  +   + E++  FR +    C   + +Y+ LI+GLCK+ R   A
Sbjct: 459 GCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDA 518

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 +       D++TYS+++ GL    ++D A +L+  +    + P+V     L+HG
Sbjct: 519 YSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHG 578

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +    + L   MK+ N +P+    + ++D L K
Sbjct: 579 LCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYK 616



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 104/197 (52%), Gaps = 1/197 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK    + +L ++  M     + D+  +++L  GL ++  V+ A +++ EM + 
Sbjct: 260 VMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKR 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TY   ++G C+ G I ES EL+  +    C  ++ +Y+  I GL ++ ++E A
Sbjct: 320 SVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCH-NVVSYNIFIRGLFENRKVEEA 378

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + ++  L R    AD  TY ++IHGL  +G ++KA  +  + ++     +   + +++ G
Sbjct: 379 ISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDG 438

Query: 181 FIRINEPSKVIELLHKM 197
             +     + + ++H+M
Sbjct: 439 LSKQGRVDEALGIVHQM 455



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 2/200 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++  Y K+K    AL+ + +M    G KP +  +N L     E + +E+A       +  
Sbjct: 84  VLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETV 143

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  + +TY I I    K    VE+  L   +     + D+ +Y  +I+G+ KSG L  A
Sbjct: 144 GILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSA 203

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
           LE+F  +    LV DV+ Y+IMI G +  G   +  +++  + + + V PNV+T+  +I+
Sbjct: 204 LEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMIN 263

Query: 180 GFIRINEPSKVIELLHKMKE 199
           G  ++    + +E+  +MK+
Sbjct: 264 GLCKMGRFDESLEMWERMKK 283



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C   +IE AL LYS M      P++V HNTL  GL++  + E A  ++  M ++
Sbjct: 574 ILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKN 633

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF 89
           G   D  +Y I + GLC  G I + + LF
Sbjct: 634 GFQPDIISYNITLKGLCSCGRISDGIALF 662



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 84  ESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
           E+++ F+ +  I  C+  I++Y+ L++   ++  LE A           ++ ++ TY+I+
Sbjct: 96  EALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNIL 155

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I       Q  +A  L   M    + P+V ++GT+I+G ++  +    +E+  +M E+ +
Sbjct: 156 IKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGL 215

Query: 203 MPDASIVSIVVD 214
           +PD    +I++D
Sbjct: 216 VPDVMCYNIMID 227


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 114/205 (55%), Gaps = 1/205 (0%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE-IHQVERAFKLFDEMQRDGVAADTRTY 69
           +++ A++ Y  M   G++  VV  N L   L +    ++ AF++F EM + G   D+ TY
Sbjct: 135 QLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTY 194

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
              I+GLCK G   E+ ELF+ +    C   +  YSCL+ GLC++G ++ A+ LF  + +
Sbjct: 195 GTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKK 254

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             +  +V TYS ++ GL  +G   +A +L   M      PN++T+ TLI+G  +  + ++
Sbjct: 255 KAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAE 314

Query: 190 VIELLHKMKEKNVMPDASIVSIVVD 214
            +E L +MK + + PDA +   +++
Sbjct: 315 AVETLDRMKLQGLKPDAGLYGKIIN 339



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNK-EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI   CKN   I+ A  ++ EM  +G  PD   + TL  GL ++ +   A +LF EM  
Sbjct: 160 VLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDT 219

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G +    TY+  + GLC+ G + E++ LF  ++    E ++  YS L+DGLCK+G    
Sbjct: 220 KGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLE 279

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+EL   + R     ++VTYS +I+GL  +G++ +A +    M+   + P+   +G +I+
Sbjct: 280 AMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIIN 339

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           GF  I +  +    L +M    + P+    S+ V L
Sbjct: 340 GFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKL 375



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ ++ +M   G KP    + ++F  L E +Q++ A   +  M+  GV     +  + I 
Sbjct: 104 AIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIK 163

Query: 75  GLCKN-GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
            LCKN G I  + E+FR +    C+ D   Y  LI+GLCK G+   A ELF  +      
Sbjct: 164 ALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCS 223

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
             VVTYS ++HGL   G +D+A  LF  M++ A+ PNV T+ +L+ G  +     + +EL
Sbjct: 224 PSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMEL 283

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAK 218
           L  M  K   P+    S +++ L K
Sbjct: 284 LEMMVRKRHKPNMVTYSTLINGLCK 308



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 5/211 (2%)

Query: 21  EMLSKGIKPDVVIHNTLFI----GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           EML++  +    I   +F+    G   +H    A ++F +M   G     ++Y      L
Sbjct: 71  EMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAIL 130

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK-SGRLEIALELFHSLPRGVLVAD 135
            +   +  ++  ++ +R +     + + + LI  LCK SG ++ A E+F  +P+     D
Sbjct: 131 VEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPD 190

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
             TY  +I+GL   G+  +A +LF +M+    +P+V+T+  L+HG  +     + + L  
Sbjct: 191 SYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFD 250

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           KMK+K + P+    S ++D L KN  SL ++
Sbjct: 251 KMKKKAIEPNVFTYSSLMDGLCKNGGSLEAM 281



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  ++  A+     M  +G+KPD  ++  +  G   I + + A    DEM    
Sbjct: 302 LINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQ 361

Query: 62  VAADTRTYTI-------FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           ++ +  T+++        + GLC NG +  S +L+  +R     +D   +  L+   CK 
Sbjct: 362 ISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKK 421

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
           G L  A  +F  +     V D   +S ++ G ++  ++ +A +
Sbjct: 422 GDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREAFE 464



 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 40/87 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G C N  +  +  LY  M ++GI  D    ++L     +   + +A ++FDEM  D
Sbjct: 378 MVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLD 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVE 87
           G   D   ++  + G      + E+ E
Sbjct: 438 GCVPDHGIWSAVVGGFWDRRKVREAFE 464



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D  T+ +MI  L +  +   A ++   M+E         F ++  G+ R++ P   I + 
Sbjct: 49  DHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVF 108

Query: 195 HKMKEKNVMP-DASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESNV 243
           HKM +    P D S +S+   L+ +N++ +    SF  + R+  V +S V
Sbjct: 109 HKMNDFGCKPTDKSYISVFAILVEENQLKVAM--SFYKYMREMGVRQSVV 156


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 1/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK K +E ALNLY EM  K + P+ V +N+L  GL +  ++  A+ L DEM   
Sbjct: 340 IMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDR 399

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG-LCKSGRLEI 119
           G  A+  TY   I+GLCKNG + +++ L   ++    + D+   + L+ G LCK  RL+ 
Sbjct: 400 GHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKN 459

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  LF  L       +V TY+I+I+G   +G +D+A+ L   ME++  +PN ITF  +I 
Sbjct: 460 AQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIIC 519

Query: 180 GFIRINEPSKVIELLHKMKEKNVM 203
             +   E  K  +LL +M  + ++
Sbjct: 520 ALLEKGETDKAEKLLCEMIARGLL 543



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 10/221 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K+        +++ +   G+ PDV  +N +   L +I +VE A  L+ EM +  
Sbjct: 314 LIDGYAKH--------VFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKN 365

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TY   IDGLCK+G I  + +L   +       ++  Y+ LI+GLCK+G+L+ A+
Sbjct: 366 MVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAI 425

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQ-MDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L + +    +  D+ T +I++HGL   G+ +  A  LF D+ +    PNV T+  +I+G
Sbjct: 426 ALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYG 485

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNE 220
             +     +   L  KM++    P+A    I++  LL K E
Sbjct: 486 HCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGE 526



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 28/240 (11%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           +I+G+C   ++  AL   +EM+ K I PDV I+NTL   L +  +V+ A  +        
Sbjct: 244 IIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTC 303

Query: 54  -------------------FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
                              F+ +   GV  D  +Y I I+ LCK   + E++ L++ +  
Sbjct: 304 LKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQ 363

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
                +   Y+ LIDGLCKSGR+  A +L   +      A+V+TY+ +I+GL  +GQ+DK
Sbjct: 364 KNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDK 423

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE-LLHKMKEKNVMPDASIVSIVV 213
           A  L   M++  + P++ T   L+HG +   +  K  + L   + +K   P+    +I++
Sbjct: 424 AIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIII 483



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ + K K     ++L   +  K I+PD    N L      + Q+  AF +  ++ + G
Sbjct: 69  ILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWG 128

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T T  I GLC  G + +++     L      LD  +Y  LI+G+CK G    A+
Sbjct: 129 YQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAI 188

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +   +   +VV Y+ +I  L     + +A +LF +M    ++ NV+T+  +IHGF
Sbjct: 189 QLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGF 248

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + + ++ +  L++M  K + PD  I + +VD L K
Sbjct: 249 CIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHK 285



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C   +I  A ++ S++L  G +PD V   TL  GL    QV++A    D++   
Sbjct: 103 ILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQ 162

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   I+G+CK G    +++L R +     E ++  Y+ +ID LCK   +  A
Sbjct: 163 GFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEA 222

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI-- 178
             LF  +    + A+VVTYS +IHG    G++ +A     +M   A+ P+V  + TL+  
Sbjct: 223 CNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDA 282

Query: 179 -HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            H   ++ E   V+ ++ K   K   P+    + ++D  AK+
Sbjct: 283 LHKEGKVKEAKNVLAVIVKTCLK---PNVITYNTLIDGYAKH 321



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 27/245 (11%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  E   A+ L   +  +  +P+VV++NT+   L +   V  A  LF EM   G
Sbjct: 174 LINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKG 233

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--- 118
           ++A+  TY+  I G C  G + E++     + +     D+  Y+ L+D L K G+++   
Sbjct: 234 ISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAK 293

Query: 119 ------------------------IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
                                    A  +F+++    +  DV +Y+IMI+ L    ++++
Sbjct: 294 NVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEE 353

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A +L+ +M +  + PN +T+ +LI G  +    S   +L+ +M ++    +    + +++
Sbjct: 354 ALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLIN 413

Query: 215 LLAKN 219
            L KN
Sbjct: 414 GLCKN 418


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 16/245 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           L++ Y K K++  A +++  M+  G  P+ + ++ L  GL +  + ++A +++ +M    
Sbjct: 531 LLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTS 590

Query: 58  ------------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
                         D +A +  TY   IDGLCK   +V++ EL   +    CE +   Y 
Sbjct: 591 DNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYD 650

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK G+L+ A E+F  + +   +  V TY+ +I  ++ D ++D A  +   M E+
Sbjct: 651 ALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLES 710

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +  PNV+T+  +I G  RI E  K ++LL  M+++   P+    + ++D L K+     S
Sbjct: 711 SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMS 770

Query: 226 LPSFT 230
           L  FT
Sbjct: 771 LQLFT 775



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  +   M+ KG  PD   ++ +   L E  +VE+AF LF EM+  GV  D 
Sbjct: 431 CGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDV 490

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++   F  +  + C   +  Y+ L+    K+ ++  A ++FH 
Sbjct: 491 YTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHR 550

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + +TYS ++ GL   G+  KA +++  M                  +++APN
Sbjct: 551 MVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPN 610

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G LI G  + ++     ELL  M      P+  I   ++D   K
Sbjct: 611 VVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCK 658



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 115/217 (52%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +++ A  ++  M   G  P V  + +L   +F+  +++ A K+  +M    
Sbjct: 652 LIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESS 711

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDGLC+ G   ++++L   +    C  ++  Y+ LIDGL KSG+++++L
Sbjct: 712 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSL 771

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       + VTY ++I+     G +D+AH L  +M++      V  + +++ GF
Sbjct: 772 QLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF 831

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  + LL +++   ++  A +  +++D  +K
Sbjct: 832 SKKFIAS--LGLLEELESHGMVSIAPVYGLLIDSFSK 866



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 16/230 (6%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+  ++E A  L+ EM S G+ PDV  +  L     ++  +E+A   FDEM+  G +   
Sbjct: 466 CEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSV 525

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  +    K   + ++ ++F  +    C  +   YS L+DGLCK+G  + A E++  
Sbjct: 526 VTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAK 585

Query: 127 L----------------PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +                    +  +VVTY  +I GL    ++  A +L   M  N   PN
Sbjct: 586 MIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPN 645

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            I +  LI GF ++ +     E+  +M +   +P     + ++D + K+ 
Sbjct: 646 HIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDR 695



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 102/198 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++  A  L   M S G +P+ +I++ L  G  ++ +++ A ++F  M + G
Sbjct: 617 LIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCG 676

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  ID + K+  +  ++++   +    C  ++  Y+ +IDGLC+ G  + AL
Sbjct: 677 YLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKAL 736

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +     +VVTY+ +I GL   G++D +  LF  M     APN +T+  LI+  
Sbjct: 737 KLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHC 796

Query: 182 IRINEPSKVIELLHKMKE 199
                  +   LL +MK+
Sbjct: 797 CAAGLLDEAHSLLSEMKQ 814



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 36/237 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+  E + AL L S M  +G  P+VV + +L  GL +  +V+ + +LF +M   G
Sbjct: 722 MIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQG 781

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--------------- 106
            A +  TY + I+  C  G + E+  L   ++       +Q Y                 
Sbjct: 782 CAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGL 841

Query: 107 ------------------LIDGLCKSGRLEIALELFHSL---PRGVLVADVVTYSIMIHG 145
                             LID   K+GRLE ALEL   +      + +    TY+ +I  
Sbjct: 842 LEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQA 901

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           L    Q++KA +L+ ++    V P +  F  LI G I++N+ ++ ++L + M ++ V
Sbjct: 902 LCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG-------LFEIHQVERAFKLF 54
           L++ YC  ++   A  L + M   G  P  V++N +FIG       L     +  A K++
Sbjct: 350 LVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYN-IFIGSICSGEELPSPDLLALAEKVY 408

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           +EM       +      F   LC  G   ++ ++ + +       D   YS +I  LC++
Sbjct: 409 EEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEA 468

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            ++E A  LF  +    ++ DV TY+I+I      G +++A   F +ME    +P+V+T+
Sbjct: 469 MKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTY 528

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             L+H +++  +  +  ++ H+M +    P+    S +VD L K
Sbjct: 529 TALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCK 572



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 7/240 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++   C++     AL     +   G +P    +N L   L    Q++  F++  EM   
Sbjct: 177 VIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSEL 236

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T   F   LCK G   +++ +         +LD    + +I GL ++   + A
Sbjct: 237 GFCTDKFTVGCFAQALCKEGRWSDALVMIEREDF---KLDTVLCTQMISGLMEASLFDEA 293

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +   H +     + +VVTY  ++ G     Q+     +   M      PN   F +L+H 
Sbjct: 294 ISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHS 353

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           +    +     +LL++M      P   + +I +  +   E     LPS  +    E+V E
Sbjct: 354 YCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGE----ELPSPDLLALAEKVYE 409


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 117/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  +++G  ++ + M+ + +KPDVV  ++L  G F + +  +A  +F+ M ++
Sbjct: 176 ILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQN 235

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D R+Y I I+GL K   + E+V LF+ ++      D   YS LIDGL K GR+   
Sbjct: 236 GVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYV 295

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +      A+V+TYS +++ L   G  D A  +F  +++    PN++T+  L+ G
Sbjct: 296 WDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDG 355

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +        E+ H +  K    D  + +++++ L +
Sbjct: 356 LCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLCR 393



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 121/219 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN  CK+K +  A +LY EM+ K I PDVV +NTL  G   + Q+E A +LF+EM+  
Sbjct: 106 MIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLK 165

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  ++ I IDGLCK G +     +   +     + D+   S LIDG     +   A
Sbjct: 166 NIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKA 225

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F+++ +  +  D+ +Y+IMI+GL     +D+A  LF +M+  ++ P+ IT+ TLI G
Sbjct: 226 RYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDG 285

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             ++   S V +L+ +M+      +    S ++++L K+
Sbjct: 286 LGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKS 324



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING  K K ++ A+ L+ EM  K + PD + ++TL  GL ++ ++   + L DEM+  
Sbjct: 246 IMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRAT 305

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +A+  TY+  ++ LCK+G+   ++ +F  ++    E ++  Y+ L+DGLCK+GRL+ A
Sbjct: 306 GRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDA 365

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+FH L       DV  Y++MI+GL  +   D+A+            PN +T+  +I  
Sbjct: 366 QEIFHDLLIKGYRLDVRLYTVMINGLCREALFDEAY---------GCTPNAVTYEIIIRA 416

Query: 181 FIRINEPSKV 190
             + N+ +K+
Sbjct: 417 LFK-NDKNKL 425



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +    ++  A ++ +++L  G +PD V   TL  GL   ++V++A    D++   
Sbjct: 15  ILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAK 74

Query: 61  GVAADTRTYTIFIDGLCKNG---------------------YIVESVELFRTLRILKCEL 99
           G   D  +Y   I+GLCK+G                      +V++ +L+  + + +   
Sbjct: 75  GFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFP 134

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           D+  Y+ LI G C  G+LE A+ LF+ +    +V +V +++I+I GL  +G +     + 
Sbjct: 135 DVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVL 194

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M + +V P+V+T  +LI G+  + + +K   + + M +  V  D    +I+++ L+K 
Sbjct: 195 AVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKA 254

Query: 220 EI 221
           ++
Sbjct: 255 KM 256



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 116/238 (48%), Gaps = 21/238 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVER------------ 49
           L+ G C N E++ AL+ + ++++KG + D V + TL  GL +  + +             
Sbjct: 51  LLKGLCINNEVKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINR 110

Query: 50  ---------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
                    A+ L+ EM    +  D  TY   I G C  G + +++ LF  +R+     +
Sbjct: 111 LCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPN 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ LIDGLCK G ++    +   + +  +  DVVT S +I G +   + +KA  +F 
Sbjct: 171 VCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFN 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            M +N V  ++ ++  +I+G  +     + + L  +M+ K++ PD    S ++D L K
Sbjct: 231 AMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGK 288



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 14/194 (7%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84
           +GI+ D++  + L    + + Q+  AF +  ++ + G   DT T T  + GLC N  + +
Sbjct: 4   RGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKK 63

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++     +      LD  +Y  LI+GLCKSG  +                D   YS++I+
Sbjct: 64  ALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETK--------------APDQFMYSMIIN 109

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L  D  +  A+DL+ +M    + P+V+T+ TLI+GF  + +    I L ++M+ KN++P
Sbjct: 110 RLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVP 169

Query: 205 DASIVSIVVDLLAK 218
           +    +I++D L K
Sbjct: 170 NVCSFNILIDGLCK 183


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 128 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   +  +  LF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 188 GVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 248 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 308 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 352



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 101/179 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 234 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 294 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++++     G + K   L  +M+ +  AP+V+T+  L++G
Sbjct: 354 KMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A  LFDEM   G
Sbjct: 164 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 284 DLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++V+   K 
Sbjct: 344 CQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 381



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++GA  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 198 VLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 258 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 317

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +++ 
Sbjct: 318 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNE 377

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+     P     +++++
Sbjct: 378 FCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 411



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 158 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFD 217

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 218 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 262



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 51  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 110

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 205



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 114 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 173

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++      L  +M  K ++P+    + 
Sbjct: 174 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTT 233

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 234 LIDGHCKN 241


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   +  +  LF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 101/179 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++++     G + K   L  +M+ +  AP+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A  LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++V+   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 400



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++GA  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +++ 
Sbjct: 337 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+     P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 430



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++      L  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  ++  A  ++ EM   G+ P+ V +  L  G F   Q E+ F LF+EM+R G
Sbjct: 44  LVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG 103

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I   C+ G    +  LF  + +     ++ +Y+ LI GLC+ G+L  A 
Sbjct: 104 VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAA 163

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        ++T+++++ G    G+M  A   F  M+     P+ +T+  LI GF
Sbjct: 164 KLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGF 223

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  + ++    L  MKE+ + P     +I++D  A+
Sbjct: 224 CRARDMTRANRALSDMKERGLEPTKVTYTILIDSFAR 260



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY  + + E    L+ EM   G++P++  +N L        + ERA  LFDEM   G
Sbjct: 79  LMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRG 138

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y   I GLC++G + ++ +L   +R       I  ++ L+DG  K+G++  AL
Sbjct: 139 IVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNAL 198

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +         VTY+++I G      M +A+    DM+E  + P  +T+  LI  F
Sbjct: 199 PFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSF 258

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            R N   K  E+L  M++  +  DA    ++V  L
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRAL 293



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 105/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C++ ++  A  L   M ++G +P ++  N L  G  +  ++  A   F++M+  G
Sbjct: 149 LIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAG 208

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY + I G C+   +  +      ++    E     Y+ LID   +   +  A 
Sbjct: 209 FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAF 268

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  L  D  TY +++  L  +G M  A  LF  M E  V P+ + +  +I+G+
Sbjct: 269 EILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGY 328

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            R     K ++L+ +M++K ++P+++   + + +L K++
Sbjct: 329 GREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 2/199 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GY K  ++  AL  +++M + G +P  V +N L  G      + RA +   +M+  
Sbjct: 183 LLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKER 242

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYTI ID   +  ++ ++ E+   +     E+D   Y  L+  LC  G ++ A
Sbjct: 243 GLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDA 302

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +LF S+  +GV  ++V+ Y +MI+G   +G   KA  L ++M +  + PN  ++G  I 
Sbjct: 303 RKLFQSMGEKGVEPSNVI-YDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIR 361

Query: 180 GFIRINEPSKVIELLHKMK 198
              + ++  +   LL  M+
Sbjct: 362 VLCKDDKCQEAEALLDDME 380



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 9/212 (4%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKP-----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           C   ++  AL     ML++G K      DV     L  G  +   V  A ++FDEM   G
Sbjct: 13  CAAGDVRSAL----AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG 68

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  + G   +G   +   LF  +R    E ++  Y+CLI   C++G  E A 
Sbjct: 69  LAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERAR 128

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +P   +V +VV+Y+ +I GL   G++  A  L   M      P++ITF  L+ G+
Sbjct: 129 SLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY 188

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  + S  +   ++MK     P A   ++++
Sbjct: 189 GKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 47  VERAFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           V  A  +     + G AA D    T  ++G CK G + E+  +F  + +L    +   Y+
Sbjct: 18  VRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYT 77

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            L+ G    G+ E    LF  + RG +  ++ TY+ +I      G+ ++A  LF +M   
Sbjct: 78  ALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVR 137

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  NV+++ TLI G  R  +     +LL  M+ +   P     +++VD   K     N+
Sbjct: 138 GIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNA 197

Query: 226 LPSF 229
           LP F
Sbjct: 198 LPFF 201



 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C    ++ A  L+  M  KG++P  VI++ +  G        +A KL  EM++ 
Sbjct: 288 VLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQK 347

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
           G+  ++ +Y + I  LCK+    E+  L   +  ++
Sbjct: 348 GLIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIR 383


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK   ++ A  L ++M S G  PD + + T+  GL    + + A +L +EM R+
Sbjct: 323 IVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRN 382

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+  FI  LC+ G I +++ L   +    C + +  Y+ L++G C  G ++ A
Sbjct: 383 NCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSA 442

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF S+P      + +TY+ ++ GL N  ++D A +L  +M      PNV+TF  L+  
Sbjct: 443 LELFRSMP---CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSF 499

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           F +     + IEL+ +M E    P+    + ++D + K+  S ++L
Sbjct: 500 FCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDAL 545



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 110/217 (50%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+   ++ A  L   M    + PD   +  L   L +  +V  A  L D+M R G
Sbjct: 117 LVAGYCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG 173

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT+ ++ +C+N    +++ +   +R   C  +I  Y+ +I+G+C+ GR++ A 
Sbjct: 174 CQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 233

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + LP      D V+Y+ ++ GL    + D   +LF +M E    PN +TF  LI  F
Sbjct: 234 ELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFF 293

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     + I++L +M E     + ++ +IV++ + K
Sbjct: 294 CRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICK 330



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 3/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C+ +  + A  L +EM+     P+ V  NT    L +   +E+A  L ++M   G
Sbjct: 359 VLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHG 418

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   ++G C  G+I  ++ELFR++    C+ +   Y+ L+ GLC + RL+ A 
Sbjct: 419 CTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAA 475

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + RG    +VVT+++++      G +++A +L   M E+   PN+IT+ TL+ G 
Sbjct: 476 ELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGI 535

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +       +ELLH +  K V PD    S ++ +L+K +
Sbjct: 536 TKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKED 574



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    I+ AL L+  M     KP+ + + TL  GL    +++ A +L  EM R  
Sbjct: 429 LVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGD 485

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+ + +   C+ G++ E++EL   +    C  ++  Y+ L+DG+ K    E AL
Sbjct: 486 CPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDAL 545

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H L    +  DV+T+S +I  L  + ++++A  LF  +++  + P  + +  ++ G 
Sbjct: 546 ELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGL 605

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +  E    I+    M     MP+ S   I+++ LA
Sbjct: 606 CKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLA 641



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 102/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C+N   E A+ +  EM +KG  P++V +N +  G+    +V+ A +L + +   
Sbjct: 183 VLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSY 242

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT +YT  + GLC +    +  ELF  +    C  +   +  LI   C+ G +E A
Sbjct: 243 GFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERA 302

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   +       +    +I+I+ +   G++D A  L  DM      P+ I++ T++ G
Sbjct: 303 IQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKG 362

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R        ELL++M   N  P+    +  + +L +
Sbjct: 363 LCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQ 400



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 100/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    +  AL+L  +ML +G +P+VV +  L   +      E+A  + DEM+  G
Sbjct: 149 LIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKG 208

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + I+G+C+ G + ++ EL   L     + D  +Y+ L+ GLC S R +   
Sbjct: 209 CTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVE 268

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +     + + VT+ ++I      G +++A  +   M E+  A N      +I+  
Sbjct: 269 ELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSI 328

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +        +LL+ M      PD    + V+  L + E
Sbjct: 329 CKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAE 367



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 95/199 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C +K  +    L++EM+ K   P+ V  + L         VERA ++ ++M   G
Sbjct: 254 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG 313

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +T    I I+ +CK G + ++ +L   +    C  D  +Y+ ++ GLC++ R + A 
Sbjct: 314 CATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAK 373

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + + R     + VT++  I  L   G +++A  L   M E+     V+T+  L++GF
Sbjct: 374 ELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGF 433

Query: 182 IRINEPSKVIELLHKMKEK 200
                    +EL   M  K
Sbjct: 434 CVQGHIDSALELFRSMPCK 452



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 4/216 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+   IE A+ L  +M   G    VV +N L  G      ++ A +LF  M       +T
Sbjct: 399 CQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNT 455

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  + GLC    +  + EL   +    C  ++  ++ L+   C+ G LE A+EL   
Sbjct: 456 ITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQ 515

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +       +++TY+ ++ G+  D   + A +L   +    V+P+VITF ++I    + + 
Sbjct: 516 MMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDR 575

Query: 187 PSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEI 221
             + ++L H +++  + P A + + I++ L  + EI
Sbjct: 576 IEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEI 611



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           DG A D    T  I  LC+ G   ++  + R        +D+ AY+ L+ G C+ G L+ 
Sbjct: 70  DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 129

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L  S+P   +  D  TY+ +I  L + G++  A  L  DM      PNV+T+  L+ 
Sbjct: 130 ARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 186

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-------NEISLNSLPSF 229
              R +   + + +L +M+ K   P+    +++++ + +        E+ LN LPS+
Sbjct: 187 AMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREL-LNRLPSY 242



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   +E A+ L  +M+  G  P+++ +NTL  G+ +    E A +L   +   
Sbjct: 495 VLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSK 554

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  T++  I  L K   I E+V+LF  ++ +        Y+ ++ GLCK   ++ A
Sbjct: 555 GVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNA 614

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++ F  +     + +  TY I+I GL ++G + +A DL 
Sbjct: 615 IDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLL 653


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  ++  A  ++ EM   G+ P+ V +  L  G F   Q E+ F LF+EM+R G
Sbjct: 44  LVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG 103

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I   C+ G    +  LF  + +     ++ +Y+ LI GLC+ G+L  A 
Sbjct: 104 VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAA 163

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        ++T+++++ G    G+M  A   F  M+     P+ +T+  LI GF
Sbjct: 164 KLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGF 223

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  + ++    L  MKE+ + P     +I++D  A+
Sbjct: 224 CRARDMTRANRALSDMKERGLEPTKVTYTILIDSFAR 260



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY  + + E    L+ EM   G++P++  +N L        + ERA  LFDEM   G
Sbjct: 79  LMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRG 138

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y   I GLC++G + ++ +L   +R       I  ++ L+DG  K+G++  AL
Sbjct: 139 IVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNAL 198

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +         VTY+++I G      M +A+    DM+E  + P  +T+  LI  F
Sbjct: 199 PFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSF 258

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            R N   K  E+L  M++  +  DA    ++V  L
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRAL 293



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 105/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C++ ++  A  L   M ++G +P ++  N L  G  +  ++  A   F++M+  G
Sbjct: 149 LIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAG 208

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY + I G C+   +  +      ++    E     Y+ LID   +   +  A 
Sbjct: 209 FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAF 268

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  L  D  TY +++  L  +G M  A  LF  M E  V P+ + +  +I+G+
Sbjct: 269 EILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGY 328

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            R     K ++L+ +M++K ++P+++   + + +L K++
Sbjct: 329 GREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 2/199 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GY K  ++  AL  +++M + G +P  V +N L  G      + RA +   +M+  
Sbjct: 183 LLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKER 242

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYTI ID   +  ++ ++ E+   +     E+D   Y  L+  LC  G ++ A
Sbjct: 243 GLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDA 302

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +LF S+  +GV  ++V+ Y +MI+G   +G   KA  L ++M +  + PN  ++G  I 
Sbjct: 303 RKLFQSMGEKGVEPSNVI-YDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIR 361

Query: 180 GFIRINEPSKVIELLHKMK 198
              + ++  +   LL  M+
Sbjct: 362 VLCKDDKCQEAEALLDDME 380



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 9/212 (4%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKP-----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           C   ++  AL     ML++G K      DV     L  G  +   V  A ++FDEM   G
Sbjct: 13  CAAGDVRSAL----AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG 68

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  + G   +G   +   LF  +R    E ++  Y+CLI   C++G  E A 
Sbjct: 69  LAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERAR 128

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +P   +V +VV+Y+ +I GL   G++  A  L   M      P++ITF  L+ G+
Sbjct: 129 SLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY 188

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  + S  +   ++MK     P A   ++++
Sbjct: 189 GKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 47  VERAFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           V  A  +     + G AA D    T  ++G CK G + E+  +F  + +L    +   Y+
Sbjct: 18  VRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYT 77

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            L+ G    G+ E    LF  + RG +  ++ TY+ +I      G+ ++A  LF +M   
Sbjct: 78  ALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVR 137

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  NV+++ TLI G  R  +     +LL  M+ +   P     +++VD   K     N+
Sbjct: 138 GIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNA 197

Query: 226 LPSF 229
           LP F
Sbjct: 198 LPFF 201



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C    ++ A  L+  M  KG++P  VI++ +  G        +A KL  EM++ 
Sbjct: 288 VLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQK 347

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
           G+  ++ +Y + I  LCK+    E+  L   +  ++
Sbjct: 348 GLIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIR 383


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 123/223 (55%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ +G+ P  +++N+L  GL   ++ ERA +L  EM   G+  +T
Sbjct: 387 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 446

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + DI  YS LIDG C +G+++ A++L   
Sbjct: 447 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSG 506

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  + VTY  +I+G     +M  A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 507 MVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 566

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL  ++ E     + S  +I++  L KN+++ ++L  F
Sbjct: 567 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMF 609



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +  AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 522 LINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 581

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    +++ +F+ L ++  +L+ + ++ +ID L K GR   A 
Sbjct: 582 TQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAK 641

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV +  TY +M   +   G +++   LFL ME+N    +      ++   
Sbjct: 642 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 701

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++  E ++    L  + EK+   +AS  S+ +DLL+  +
Sbjct: 702 LQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGK 740



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A+ L S M+S G+KP+ V + TL  G  +I ++  A  LF EM+  G
Sbjct: 487 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSG 546

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     ++++  Y+ ++ GLCK+   + AL
Sbjct: 547 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 606

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+  +A DLF+    N + PN  T+  +    
Sbjct: 607 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENI 666

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
           I      ++ +L   M++     D+ +++ +V +LL + EI+
Sbjct: 667 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 708



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   + E A  L  EML +GI  + +  N++     +  +V  + KLFD M R G
Sbjct: 417 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 476

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG C  G + E+++L   +  +  + +   Y  LI+G CK  R+  AL
Sbjct: 477 VKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDAL 536

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + E+     + T+  ++HG 
Sbjct: 537 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 596

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       + +   +   ++  +A   +I++D L K
Sbjct: 597 CKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLK 633



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 11/221 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPD-----VVIHNTLFIGLFEIHQVERAFKLFDE 56
           +++GYC + + + A+    ++ S G++PD     +  + TL  G      +     L D 
Sbjct: 272 IMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDL 331

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M R+G+  D   Y I I    K G + E++ +F  +R      D   Y  +I  LCKSGR
Sbjct: 332 MVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGR 391

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +E A+  F  +    L    + Y+ +IHGL    + ++A +L L+M +  +  N I F +
Sbjct: 392 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 451

Query: 177 LIHGFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +I       R+ E  K+ +L+ ++    V PD    S ++D
Sbjct: 452 IIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYSTLID 489



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 4/210 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C+   ++        ++ KG + + +    L  GL    +   A  +    M  
Sbjct: 92  ILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
                D  + TI + GLC      E++EL   +   R      D+ +Y+ +I+G  K G 
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
              A   +H +    +  DVVTYS +I  L     MDKA ++   M +N V PN  T+ +
Sbjct: 212 SGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTS 271

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           ++HG+    +P + I  L K++   V PD 
Sbjct: 272 IMHGYCSSGQPKEAIGFLKKVRSDGVEPDG 301



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 30/218 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +   A + Y EML + I PDVV ++++   L +   +++A ++   M ++G
Sbjct: 202 VINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTYT  + G C +G   E++   + +R               DG+   G      
Sbjct: 262 VMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRS--------------DGVEPDG------ 301

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                     L  D+ TY  ++ G    G +   H L   M  N + P+   +  LI  +
Sbjct: 302 ----------LEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAY 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + PDA     V+ +L K+
Sbjct: 352 AKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKS 389



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 16/219 (7%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG---VAADTRTY 69
           E A +++ E+L +G    +   N     +   H    A   ++ M R G   V     TY
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTY 90

Query: 70  TIFIDGLCKNGYIVESVEL-FRTL-RILKCELDIQA--YSCLIDGLCKSGRLEIALEL-F 124
            I I   C+     + ++L F  L  ++K    ++A  ++ L+ GLC   R   A+++  
Sbjct: 91  AILIGCCCR----ADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVL 146

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL---FLDMEENAVAPNVITFGTLIHGF 181
             +     + DV + +I++ GL ++ +  +A +L     D      AP+V+++ T+I+GF
Sbjct: 147 RRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGF 206

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  +  K     H+M ++ + PD    S ++  L K +
Sbjct: 207 FKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQ 245



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 47/100 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKNK  + AL ++  +    +K +    N +   L ++ +   A  LF     +
Sbjct: 591 IILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSN 650

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G+  +  TY +  + +   G + E  +LF ++    C +D
Sbjct: 651 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 690


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C+N EI+ AL L++  L KG+KP V+++N L  GL +   + +A ++ +EM  +G
Sbjct: 362 LINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            ++D  TY + I+GLCK G + ++  L           D+  ++ LIDG CK  ++E  +
Sbjct: 422 CSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTI 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +    +  DV+TY+ +++GL    + +   + F  M E    PN IT+  L    
Sbjct: 482 QILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESL 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + ++ ++L+ ++  K + PD    + ++   A N
Sbjct: 542 CKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANN 579



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   ++ A  +    + KG  PD   + +L  GL +  +++RA  LF+     G
Sbjct: 327 LIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKG 386

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y + I GLC+ G I++++++   +    C  DI  Y+ +I+GLCK G +  A 
Sbjct: 387 LKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDAN 446

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L +       V DV T++ +I G     +M+    +   M  + V P+VIT+ ++++G 
Sbjct: 447 NLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGL 506

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +   ++E    M EK  +P+    +I+ + L K
Sbjct: 507 SKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCK 543



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I G C+   + GA+++   ++ +G+ PDVV +NTL  GL +   V  A K   ++   
Sbjct: 256 IFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNG 315

Query: 61  GVAADTRTYTIFIDGLCKNGY-----------------------------IVESVELFRT 91
           G+  D  TY   IDG CK G                              + ++ E+ R 
Sbjct: 316 GLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRA 375

Query: 92  LRILKCELD------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           L +    L       +  Y+ LI GLC+ G +  AL++ + +      +D+ TY+++I+G
Sbjct: 376 LALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVING 435

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +  A++L  D       P+V TF TLI G+ +  +    I++L+KM    V PD
Sbjct: 436 LCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPD 495

Query: 206 ASIVSIVVDLLAK 218
               + V++ L+K
Sbjct: 496 VITYNSVLNGLSK 508



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I  +C+ K    AL L + M+S+G + + V + T+  G +E +    A++LF++M R 
Sbjct: 151 IRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRI 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+  D  T+   +  LCK G + ES  L  + L+   C  ++  ++  I GLC+ G L  
Sbjct: 211 GIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCS-NLFTFNIFIQGLCRKGMLSG 269

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ +  S+ R  L  DVVTY+ +I GL  +  + +A      +    + P+  T+ TLI 
Sbjct: 270 AMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLID 329

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G+ ++       ++L     K  +PD      +++ L +N+
Sbjct: 330 GYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQND 370



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK  E++ +  L +++L KG+  ++   N    GL     +  A  + D + R+G
Sbjct: 222 LLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I GLCKN  +VE+ +    L     E D   Y+ LIDG CK G L+ A 
Sbjct: 282 LTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAE 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++         V D  TY  +I+GL  + ++D+A  LF       + P VI +  LI G 
Sbjct: 342 KILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGL 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + ++++++M E     D    ++V++ L K
Sbjct: 402 CQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCK 438



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK   +  A NL ++ ++KG  PDV   NTL  G  +  ++E   ++ ++M   
Sbjct: 431 LVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSH 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   ++GL K     + +E F T+    C  +   Y+ L + LCK+G++  A
Sbjct: 491 GVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEA 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
           L+L   +    +  D V+++ +I G  N+G +  A+ LF  M E+  V+    T+  +I+
Sbjct: 551 LDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMIN 610

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            F    +     +L  +M      PD     +++D
Sbjct: 611 AFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMID 645



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 36/240 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  ++E  + + ++M S G+ PDV+ +N++  GL +  + E   + F+ M   G
Sbjct: 467 LIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I  + LCK G + E+++L   +       D  +++ +I G   +G L+ A 
Sbjct: 527 CVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAY 586

Query: 122 ELFHSLPR------------------------------------GVLVADVVTYSIMIHG 145
           +LF  +                                      G    D  TY +MI G
Sbjct: 587 QLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDG 646

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G  D  +   L+M E    P++ TFG +I+     +   + ++++H M    ++P+
Sbjct: 647 FCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 1/221 (0%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           Y +N  +E A  L+++ML  GI PDV   N L   L +  +V+ + +L +++ + G+ ++
Sbjct: 192 YEENYRVE-AYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSN 250

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             T+ IFI GLC+ G +  ++ +  ++       D+  Y+ LI GLCK+  +  A +  H
Sbjct: 251 LFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLH 310

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            L  G L  D  TY+ +I G    G +  A  +          P+  T+ +LI+G  + +
Sbjct: 311 KLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQND 370

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           E  + + L +    K + P   + ++++  L +  + L +L
Sbjct: 371 EIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQAL 411



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 101/218 (46%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           +  Y +  +++ A++++  M     +P V+ +N +   L E    ++A K+F  M+  G+
Sbjct: 83  MKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGI 142

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  T+TI I   C+      ++ L   +    C+L+  AY  ++ G  +      A E
Sbjct: 143 VPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYE 202

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF+ + R  +  DV T++ ++H L   G++ ++  L   + +  +  N+ TF   I G  
Sbjct: 203 LFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLC 262

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           R    S  + +L  +  + + PD    + ++  L KN 
Sbjct: 263 RKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNS 300



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 91/204 (44%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  ++  M + GI PDV              +   A +L + M   G   +   Y   + 
Sbjct: 130 AHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVA 189

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G  +  Y VE+ ELF  +  +    D+  ++ L+  LCK G ++ +  L + + +  + +
Sbjct: 190 GFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCS 249

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           ++ T++I I GL   G +  A  +   +    + P+V+T+ TLI G  + +   +  + L
Sbjct: 250 NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYL 309

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
           HK+    + PD    + ++D   K
Sbjct: 310 HKLVNGGLEPDGFTYNTLIDGYCK 333


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  + + AL L+ EM  +GI P+ +I++ +  GL +  ++  A +LF +M+  
Sbjct: 203 ILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRAS 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY + ++G CK+GY+ ++  L + L      L +  Y CLI+GL ++ R E A
Sbjct: 263 GCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEA 322

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              +  + R  +  DV+ Y+IMI GL  +G++ +A  L  +M E  + P+ I +  LI G
Sbjct: 323 HMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKG 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F  +    +   L  ++ + +  P+    SI++  + KN
Sbjct: 383 FCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKN 421



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 13/256 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G  +   +  AL L  EM  +G++PD + +N L  G  ++  ++ A  L  E+ + 
Sbjct: 343 IMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKH 402

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY+I I G+CKNG I ++  +F+ +  L C   +  ++ LI+GLCK+ RLE A
Sbjct: 403 DCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462

Query: 121 LELFHSL-----PRGVL--------VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LF+ +     P   L        V D+ +  +M+  L   G + KA+ L + + ++ V
Sbjct: 463 RLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGV 522

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
            P++ T+  LI+GF +    +   +L  +M+ K  MPD+     ++D L +   + ++L 
Sbjct: 523 LPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALE 582

Query: 228 SFTVHERQEEVDESNV 243
            F    ++  V ES+ 
Sbjct: 583 IFEQMVKKGCVPESST 598



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 102/192 (53%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y++ML   + PDVV +  L  GL +  + + A  LFDEM   G+  +   Y+I + 
Sbjct: 182 ALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLS 241

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC+   I ++  LF  +R   C  D+  Y+ L++G CKSG L+ A  L   L +   + 
Sbjct: 242 GLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHIL 301

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V+ Y  +I+GL+   + ++AH  +  M    + P+V+ +  +I G  +    ++ + LL
Sbjct: 302 GVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLL 361

Query: 195 HKMKEKNVMPDA 206
            +M E+ + PD 
Sbjct: 362 GEMTERGLRPDT 373



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           ILI G CKN  I  A +++ EM   G  P VV  N+L  GL + +++E A  LF +M   
Sbjct: 413 ILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIV 472

Query: 58  ----------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
                     Q      D  +  + ++ LC++G I+++ +L   L       DI+ Y+ L
Sbjct: 473 RKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNIL 532

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           I+G CK G +  A +LF  +     + D VTY  +I GLY  G+ + A ++F  M +   
Sbjct: 533 INGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGC 592

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHK 196
            P   T+ T++    R N  S  + +  K
Sbjct: 593 VPESSTYKTIMTWSCRENNISLALSVWMK 621



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 37  LFIG-LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95
           L IG L + +  E  +K+  E++   +   +  +++ I+   + G   ++VE F  +R  
Sbjct: 98  LIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDF 157

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            C+ D+ A++ ++  L +     +AL +++ + +  L  DVVTY I+IHGL    +   A
Sbjct: 158 DCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDA 217

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
             LF +M +  + PN I +  ++ G  +  +      L  KM+      D    +++++ 
Sbjct: 218 LVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNG 277

Query: 216 LAKN 219
             K+
Sbjct: 278 FCKS 281



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 43/247 (17%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV----ERAFKLFDEMQRDGVAADTRT 68
           E A  LY ++L +     + I +  F  L E +      E+A + F  M+      D   
Sbjct: 106 ENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFA 165

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHS 126
           + + +  L +    + ++ ++   ++LKC L  D+  Y  LI GLCK+ + + AL LF  
Sbjct: 166 FNLILHFLVRKEAFLLALAVYN--QMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDE 223

Query: 127 LP-RGVLV----------------------------------ADVVTYSIMIHGLYNDGQ 151
           +  RG+L                                    D++TY+++++G    G 
Sbjct: 224 MTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGY 283

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D A  L   + ++     VI +G LI+G  R     +      KM  +N+ PD  + +I
Sbjct: 284 LDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTI 343

Query: 212 VVDLLAK 218
           ++  L++
Sbjct: 344 MIRGLSQ 350



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 39/189 (20%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL-----------------------F 38
           LI+G  +    E AL ++ +M+ KG  P+   + T+                       F
Sbjct: 567 LIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDF 626

Query: 39  IGL-----------FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
            G            F+  +++ A +   EM       D   YTIF+ GL +     E+  
Sbjct: 627 RGWEDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFA 686

Query: 88  LFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELF-HSLPRGVLVADVVTYSIMIH 144
           +F  L+  K  ++I + SC  LI  LC    L++A+++F  +L RG  +   +   ++ +
Sbjct: 687 IFSVLKDFK--MNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLCN 744

Query: 145 GLYNDGQMD 153
            L+ D + D
Sbjct: 745 LLHLDRKDD 753


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK  +++ A +    M + G+KP+VV +NT+  G     +VE A  + D M+  
Sbjct: 241 IMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNR 300

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+ TY   I G+CK G + E+  +   ++ +        Y+ LIDG C  G L  A
Sbjct: 301 GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKA 360

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 + R  ++  V TY+++IH L+ +G+MD+A  +  DM ++ + P+ IT+  LI+G
Sbjct: 361 FGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILING 420

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R     K   L  +M  K + P     + ++ +L+K
Sbjct: 421 YCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSK 458



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+    + A NL+ EM+SKGI+P +V + +L   L + ++++ A  LF+++ R+
Sbjct: 416 ILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIRE 475

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D   +   IDG C NG +  +  L + +       D   Y+ L+ G C+ G++E A
Sbjct: 476 GASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEA 535

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + R  +  D ++Y+ +I G    G ++ A  +  +M      P ++T+  LI G
Sbjct: 536 RELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQG 595

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +     ELL +M  K + PD S    +++ + K
Sbjct: 596 LCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGK 633



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++  A     EM+ + I P V  +N L   LF   +++ A  +  +M   G
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSG 406

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D+ TY I I+G C+ G   ++  L   +     +  +  Y+ LI  L K  R++ A 
Sbjct: 407 IVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAAD 466

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  + R     D++ ++ +I G   +G +D+A  L  +M++  + P+ +T+ TL+ G 
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGR 526

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R  +  +  ELL +MK + + PD
Sbjct: 527 CREGKVEEARELLKEMKRRGIRPD 550



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC    +EGA  +   M ++G++PD   + +L  G+ +  ++E A  + ++M+  G
Sbjct: 277 VIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-IQAYSCLIDGLCKSGRLEIA 120
           +     TY   IDG C  G +V++   +R   + +  L  +  Y+ LI  L   G+++ A
Sbjct: 337 LLPTAVTYNTLIDGYCNKGDLVKAFG-YRDEMVRRAILPTVSTYNLLIHALFLEGKMDEA 395

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +V D +TY+I+I+G    G   KA +L  +M    + P ++T+ +LI+ 
Sbjct: 396 DGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYV 455

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             + N      +L  K+  +   PD  + + ++D
Sbjct: 456 LSKRNRMKAADDLFEKIIREGASPDLIMFNALID 489



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 104/216 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C+ K  + A   +  M  KG+ P +   N +     +++Q E  + L+ EM R 
Sbjct: 171 MLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRL 230

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            + +   T+ I I+ LCK G + ++ +   ++  L  + ++  Y+ +I G C  GR+E A
Sbjct: 231 KIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGA 290

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  D  TY  +I G+   G++++A  +   M+E  + P  +T+ TLI G
Sbjct: 291 RMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDG 350

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +    +  K      +M  + ++P  S  ++++  L
Sbjct: 351 YCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHAL 386



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 106/220 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+      +++ A  +  +M   GI PD + +N L  G       ++AF L DEM   
Sbjct: 381 LLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISK 440

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT  I  L K   +  + +LF  +       D+  ++ LIDG C +G L+ A
Sbjct: 441 GIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRA 500

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + +  +V D VTY+ ++ G   +G++++A +L  +M+   + P+ I++ TLI G
Sbjct: 501 FALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISG 560

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +  + +    +  +M      P     + ++  L KN+
Sbjct: 561 YSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQ 600



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 95/204 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++E A  +  +M   G+ P  V +NTL  G      + +AF   DEM R  
Sbjct: 312 LISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRA 371

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + I  L   G + E+  + + +       D   Y+ LI+G C+ G  + A 
Sbjct: 372 ILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAF 431

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +   +VTY+ +I+ L    +M  A DLF  +     +P++I F  LI G 
Sbjct: 432 NLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGH 491

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                  +   LL +M ++N++PD
Sbjct: 492 CANGNLDRAFALLKEMDKRNIVPD 515



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C N  ++ A  L  EM  + I PD V +NTL  G     +VE A +L  EM+R G
Sbjct: 487 LIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRG 546

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G  K G I ++  +   +  +     +  Y+ LI GLCK+ + ++A 
Sbjct: 547 IRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAE 606

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
           EL   +    +  D  TY  +I G+   G++D + +
Sbjct: 607 ELLKEMVSKGITPDDSTYFSLIEGI---GKVDDSSE 639



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G K  +V  + L     E+ + + AF+ FD M+  GV     T+   +    K       
Sbjct: 162 GTKSSIVF-DMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETV 220

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             L+  +  LK +  +  ++ +I+ LCK G+L+ A +   S+    +  +VVTY+ +IHG
Sbjct: 221 WVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHG 280

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + G+++ A  +   M+   V P+  T+G+LI G  +  +  +   +L KMKE  ++P 
Sbjct: 281 YCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPT 340

Query: 206 ASIVSIVVD 214
           A   + ++D
Sbjct: 341 AVTYNTLID 349



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           + + I   C+     ++ E F  ++       I+ ++ ++    K  + E    L+  + 
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMF 228

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           R  + + V T++IMI+ L  +G++ KA D    ME   V PNV+T+ T+IHG+       
Sbjct: 229 RLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE 288

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +L  MK + V PD+     ++  + K
Sbjct: 289 GARMVLDIMKNRGVEPDSYTYGSLISGMCK 318


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 117/213 (54%), Gaps = 1/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ K+  + G++ ++ EML + +KP+V+ +N+L  GL    ++  A  + D+M   
Sbjct: 301 ILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSA 360

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I+G CKN  + E++++F +++        + Y+ LID  CK G+++  
Sbjct: 361 GVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG 420

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +V DV TY+ +I GL  +G ++ A  LF  +    + P+++TF  L+ G
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEG 479

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + R  E  K   LL +M +  + P     +IV+
Sbjct: 480 YCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVM 512



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 2/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CKN  ++ AL+++  +  +G  P   ++N L     ++ +++  F L +EM+R+G
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I GLC+NG I  + +LF  L   K   D+  +  L++G C+ G    A 
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TSKGLPDLVTFHILMEGYCRKGESRKAA 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIHG 180
            L   + +  L    +TY+I++ G   +G +  A ++   ME E  +  NV ++  L+ G
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQG 550

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + +  +      LL++M EK ++P+     IV
Sbjct: 551 YSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 113/222 (50%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK---LFDEM 57
           ++IN  CK  ++  A ++  +M   G  P+VV +NTL  G  ++    + +K   +  EM
Sbjct: 228 VVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM 287

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
             + V+ +  T+ I IDG  K+  +  S+++F+ +     + ++ +Y+ LI+GLC  G++
Sbjct: 288 VENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKI 347

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A+ +   +    +  +++TY+ +I+G   +  + +A D+F  ++     P    +  L
Sbjct: 348 SEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNML 407

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I  + ++ +      L  +M+ + ++PD    + ++  L +N
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 114/241 (47%), Gaps = 3/241 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y  N   E     +      G K   +    L I L + ++      ++ EM R 
Sbjct: 158 MLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRR 217

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK---SGRL 117
            +  +  T+ + I+ LCK G + ++ ++   +++  C  ++ +Y+ LIDG CK   +G++
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKM 277

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A  +   +    +  ++ T++I+I G + D  +  +  +F +M +  V PNVI++ +L
Sbjct: 278 YKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           I+G     + S+ I +  KM    V P+    + +++   KN++   +L  F   + Q  
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397

Query: 238 V 238
           V
Sbjct: 398 V 398



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+N  IE A  L+ ++ SKG+ PD+V  + L  G     +  +A  L  EM + G
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMG 500

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY I + G CK G +  +  +   + +  +  +++ +Y+ L+ G  + G+LE A
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDA 560

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
             L + +    LV + +TY I+   + + G
Sbjct: 561 NMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 90/190 (47%), Gaps = 8/190 (4%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           ++H +  A  + D +  + + AD     + +     N       E F+       +L   
Sbjct: 135 QVHSIFHAISMCDNVCVNSIIAD-----MLVLAYANNSRFELGFEAFKRSGYYGYKLSAL 189

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +   L+  L K  R      ++  + R  +  +V T++++I+ L   G+M+KA D+  DM
Sbjct: 190 SCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDM 249

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +    +PNV+++ TLI G+ ++    K+ +   +L +M E +V P+ +  +I++D   K+
Sbjct: 250 KVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKD 309

Query: 220 EISLNSLPSF 229
           +    S+  F
Sbjct: 310 DNLPGSMKVF 319



 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I++ GYCK   ++ A N+ ++M   + ++ +V  +N L  G  +  ++E A  L +EM  
Sbjct: 510 IVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLE 569

Query: 60  DGVAADTRTYTIFIDGLCKNGYI 82
            G+  +  TY I  + +   G++
Sbjct: 570 KGLVPNRITYEIVKEEMVDQGFV 592


>gi|218186396|gb|EEC68823.1| hypothetical protein OsI_37392 [Oryza sativa Indica Group]
          Length = 1370

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI+GYC+  ++   L L  EM +KG  P +V + +L   L +   +E+   LF EM++ 
Sbjct: 1001 VLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKR 1060

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G + + + Y   ID LC      +++ + + +    C+ DI  ++ L+ GLC  G +  A
Sbjct: 1061 GFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLMTGLCHEGHVRKA 1120

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                    R  L  + ++Y+ +IHG    G++  A DL ++M      P+V+TFG LIHG
Sbjct: 1121 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHG 1180

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
             +   + S+ + +  KM E+ V PD +I ++++  L K  +    LP+       EE+ E
Sbjct: 1181 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM----LPA--AKNILEEMLE 1234

Query: 241  SNVK 244
             NV+
Sbjct: 1235 KNVQ 1238



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 103/219 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LIN   K  ++E   +L+ EM  +G  P+V I+N++   L       +A  +  +M   G
Sbjct: 1037 LINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASG 1096

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               D  T+   + GLC  G++ ++    R     +   +  +Y+ LI G C  G L +A 
Sbjct: 1097 CDPDIITFNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVAS 1156

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L   +       DVVT+  +IHGL   G++ +A  +   M E  V P+V  +  LI G 
Sbjct: 1157 DLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL 1216

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +         +L +M EKNV PD  + + ++D   ++E
Sbjct: 1217 CKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 1255



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+  C  +    A+ +  +M + G  PD++  NTL  GL     V +A     E  R  
Sbjct: 1072 VIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLMTGLCHEGHVRKAEHFLREAIRRE 1131

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  +  +YT  I G C  G ++ + +L   +       D+  +  LI GL  +G++  AL
Sbjct: 1132 LNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEAL 1191

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +   +    +  DV  Y+++I GL     +  A ++  +M E  V P+   + TLI GF
Sbjct: 1192 IVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGF 1251

Query: 182  IRINEPSKVIELLHKMKEKNVMPD 205
            IR        ++   M+ K V PD
Sbjct: 1252 IRSENLGDARKIFEFMEHKGVCPD 1275



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%)

Query: 35   NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
            N L   L E  + +   KL+DEM      AD  +  + + GLC    + E ++L      
Sbjct: 930  NHLLKLLVEQRRWDDGRKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWG 989

Query: 95   LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
              C   +  Y+ LIDG C+ G +   L L   +     +  +VTY  +I+ L   G ++K
Sbjct: 990  AGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEK 1049

Query: 155  AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               LFL+M +   +PNV  + ++I         ++ + +L +M      PD
Sbjct: 1050 IGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPD 1100



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G+C   E+  A +L  EM+ +G  PDVV    L  GL    +V  A  + ++M    
Sbjct: 1142 LIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQ 1201

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            V  D   Y + I GLCK   +  +  +   +     + D   Y+ LIDG  +S  L  A 
Sbjct: 1202 VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDAR 1261

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            ++F  +    +  D+V+ + MI G    G M +A
Sbjct: 1262 KIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEA 1295



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI+G CK + +  A N+  EML K ++PD  ++ TL  G      +  A K+F+ M+  
Sbjct: 1211 VLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHK 1270

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
            GV  D  +    I G C+ G + E++     +R
Sbjct: 1271 GVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMR 1303



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G     ++  AL +  +M  + + PDV I+N L  GL +   +  A  + +EM    
Sbjct: 1177 LIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKN 1236

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            V  D   Y   IDG  ++  + ++ ++F  +       DI + + +I G C+ G +  A+
Sbjct: 1237 VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAI 1296


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 114/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + K    E    ++ EM+ +G  PD+ + N     +F+  +  +   LF+E++  G
Sbjct: 518 LIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRG 577

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y+I I GL K G+  E+ ELF  ++   C LD  AY+  IDG CKSG++  A 
Sbjct: 578 FIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAY 637

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        VVTY  +I GL    ++D+A+ LF + + N +  NV+ + +LI GF
Sbjct: 638 QLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGF 697

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   ++ ++ +K + P+    + ++D L K E
Sbjct: 698 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 736



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 122/228 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G+CK+ ++  A  L  EM +KG +P VV + ++  GL +I +++ A+ LF+E + +G
Sbjct: 623 FIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNG 682

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   L       ++  ++CL+D L K+  +  AL
Sbjct: 683 LELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEAL 742

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F ++       + +TYSI+I+GL    + +KA   + +M++  + PN IT+ T+I G 
Sbjct: 743 VCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGL 802

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +    ++   L  + K    +PD++  + +++ L+ +  ++ +   F
Sbjct: 803 AKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIF 850



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  E      L+ E+ S+G  PDV+ ++ L  GL +       ++LF  M
Sbjct: 549 LLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAM 608

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  G   DT  Y  FIDG CK+G + ++ +L   ++    +  +  Y  +IDGL K  RL
Sbjct: 609 KEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRL 668

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       L  +VV YS +I G    G++D+A+ +  ++ +  + PNV T+  L
Sbjct: 669 DEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCL 728

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E ++ +     MK     P+    SI+++ L +
Sbjct: 729 LDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCR 769



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K   ++ A  LY +ML     P+ V++ +L    F+  + E   K+F EM   G
Sbjct: 483 LIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRG 542

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D R    ++D + K G   +   LF  ++      D+ +YS LI GL K+G      
Sbjct: 543 CSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETY 602

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+++     V D   Y+  I G    G+++KA+ L  +M+     P V+T+G++I G 
Sbjct: 603 ELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGL 662

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K   +  +  I S ++D   K
Sbjct: 663 AKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGK 699



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK K+++ A +++  M  K   PD V   +L  GL +  +V+ A++L+++M   
Sbjct: 447 IMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDS 506

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   YT  I    K G   +  ++F+ +    C  D++  +  +D + K+G     
Sbjct: 507 DKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKG 566

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +     + DV++YSI+IHGL   G   + ++LF  M+E     +   + T I G
Sbjct: 567 RALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDG 626

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  + +K  +LL +MK K   P       V+D LAK
Sbjct: 627 FCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAK 664



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K         L+  M  +G   D   +NT   G  +  +V +A++L +EM+  
Sbjct: 587 ILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTK 646

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   IDGL K   + E+  LF   +    EL++  YS LIDG  K GR++ A
Sbjct: 647 GRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEA 706

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   L +  L  +V T++ ++  L    ++++A   F +M+     PN IT+  LI+G
Sbjct: 707 YLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILING 766

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ + +K      +M+++ + P+    + ++  LAK
Sbjct: 767 LCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAK 804



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 119/244 (48%), Gaps = 19/244 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   ++ A  L+ E  S G++ +VVI+++L  G  ++ +++ A+ + +E+ + G
Sbjct: 658 VIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 717

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F+ ++ LK   +   YS LI+GLC+  +   A 
Sbjct: 718 LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAF 777

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  L  + +TY+ MI GL   G + +A  LF   + N   P+  ++  +I G 
Sbjct: 778 VFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGL 837

Query: 182 I---RINEPSKVIE----------------LLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
               R  E  K+ E                LL  +++   +  A+IV  V+  +AK++ +
Sbjct: 838 SYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQAAIVGAVLREIAKSQHA 897

Query: 223 LNSL 226
             S 
Sbjct: 898 ARSW 901



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 1/221 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL  + EM  K   P++  +N L   L +  +VE AFK+ D M+  G+  +  T  I ID
Sbjct: 392 ALRTFEEM-KKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMID 450

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            LCK   + E+  +F  +    C  D   +  LIDGL K GR++ A  L+  +     + 
Sbjct: 451 RLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIP 510

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + V Y+ +I   +  G+ +  H +F +M     +P++      +    +  E  K   L 
Sbjct: 511 NAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALF 570

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            ++K +  +PD    SI++  L K   +  +   F   + Q
Sbjct: 571 EEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQ 611



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 36/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  + +   ++ AL+L  EM S  +  D+V++N       +  +V+ A+K F E++  G
Sbjct: 239 VIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHG 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------------------- 92
           +  D  TYT  I  LCK   + E+VE+F  +                             
Sbjct: 299 LLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAY 358

Query: 93  ------RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                 +   C   + AY+C++  L K GRL  AL  F  + +     ++ TY+++I  L
Sbjct: 359 SLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APNLSTYNVLIDML 417

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+++ A  +   M+E  + PNV+T   +I    +  +  +   +   M  K   PD 
Sbjct: 418 CKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDE 477

Query: 207 SIVSIVVDLLAKN 219
                ++D L K 
Sbjct: 478 VTFCSLIDGLGKQ 490



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+ ++    +L   M     +P    + TL   L  + + +    LF +MQ  G      
Sbjct: 175 KSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVH 234

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            +T  I    + G +  ++ L   ++      DI  Y+  ID   K+G++++A + FH +
Sbjct: 235 LFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEI 294

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L+ D VTY+ MI  L    ++D+A ++F  ME+N   P    + T+I G+    + 
Sbjct: 295 KSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKF 354

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   LL + K +  +P     + ++  L K      +L +F
Sbjct: 355 DEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTF 396



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 100/217 (46%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI      +E +  L L+ +M   G +  V +  T+        +++ A  L DEM+ + 
Sbjct: 204 LIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNC 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD   Y + ID   K G +  + + F  ++      D   Y+ +I  LCK  RL+ A+
Sbjct: 264 LHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAV 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +   V     Y+ MI G  + G+ D+A+ L    +     P+VI +  ++   
Sbjct: 324 EIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCL 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + +    +MK K+  P+ S  ++++D+L K
Sbjct: 384 GKKGRLGEALRTFEEMK-KDAAPNLSTYNVLIDMLCK 419



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+ ++   A   + EM  +G+KP+ + + T+  GL +   +  A  LF+  + +
Sbjct: 762 ILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKAN 821

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+ +Y   I+GL  +   +E+ ++F   R+  C +  +    L+D L K   LE A
Sbjct: 822 GGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQA 881



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 72/168 (42%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           ++  EM   G    T+T    I    K+  + E  +L + +R  K      AY+ LI  L
Sbjct: 149 QILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGAL 208

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
                 +I L LFH +        V  ++ +I     +G++D A  L  +M+ N +  ++
Sbjct: 209 SSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADI 268

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +   I  F +  +     +  H++K   ++PD    + ++ +L K 
Sbjct: 269 VLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKG 316


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  +I  A ++++ +   G++P VV  NTL  G   +  ++  F+L + M   
Sbjct: 130 ILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHAS 189

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ E+F  +       +   ++ LIDG CK+GR+++A
Sbjct: 190 GVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 249

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AHDL  +M    + P+ IT+ TLI G
Sbjct: 250 MEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDG 309

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++ +  D    + ++  L + E  L++
Sbjct: 310 CCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDA 354



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L + M + G++PDV  ++ L  GL +  +++ A ++FDEM   G
Sbjct: 166 LMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 226 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAH 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 286 DLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGL 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 346 CQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKK 383



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 236 LIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+  R   A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAE 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++   +    L  D  TY+++I+     G +     L  +M+
Sbjct: 356 KVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 101/198 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  ++ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 200 VLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 259

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 260 SLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETA 319

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  + +   A  +  +M    + P+  T+  +I+ 
Sbjct: 320 FEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINE 379

Query: 181 FIRINEPSKVIELLHKMK 198
           F +  +     +LL +M+
Sbjct: 380 FCKKGDVWTGSKLLKEMQ 397



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 84/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK G I+ +  +F  +        
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPS 159

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  + G ++    L +++    +  DV TYS++I+GL  + +MD A+++F 
Sbjct: 160 VVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFD 219

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 220 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPD 264



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F+++ +  L   VV+++ +++G    G 
Sbjct: 116 ILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGD 175

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           MD+   L   M  + V P+V T+  LI+G  + ++     E+  +M +K ++P+    + 
Sbjct: 176 MDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTT 235

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 236 LIDGHCKN 243



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ ++ E +R  R  K  +       +++ L K    ++    
Sbjct: 53  SDIYVFSGLITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 112

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G +  A  +F  + +  + P+V++F TL++G+IR
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 172

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L + M    V PD    S++++ L K
Sbjct: 173 LGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCK 207


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG  K + +  A   + EMLSKG++PD   +NT       +    +AF+L + M   
Sbjct: 459 ILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLK 518

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  DT TY + IDGLCK G + ++ +L   +     + D   Y+CLI   C+ G L  A
Sbjct: 519 GIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEA 578

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L + +    L   VVTY+I+IH     G +  A+  F  M +  + PN IT+  LIH 
Sbjct: 579 RKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHA 638

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R           H+M E+ + P+    ++++D
Sbjct: 639 LCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLID 672



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK   ++ A +L  +M+S G++PD + +  L     E   +  A KL + M  D
Sbjct: 529 VIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSD 588

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYTI I   C+ G +  +   FR +  +  E +   Y+ LI  LC++GR  +A
Sbjct: 589 GLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLA 648

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              FH +    L  +  TY+++I G   +G    A  L+ +M +N + P+  T   L  G
Sbjct: 649 YHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKG 708

Query: 181 F 181
           F
Sbjct: 709 F 709



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 98/202 (48%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L  EM ++GI P +V +N +  GL +  QVE A   F EM+  G+  D  TY   ++G C
Sbjct: 336 LQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYC 395

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + E++ L   LR       +  Y+ LIDG C+ G LE A  L   +       DV 
Sbjct: 396 KAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVC 455

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+I+++G +    +  A + F +M    + P+   + T I   + + +  K  +L   M
Sbjct: 456 TYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVM 515

Query: 198 KEKNVMPDASIVSIVVDLLAKN 219
             K + PD    ++++D L K 
Sbjct: 516 MLKGIYPDTVTYNVIIDGLCKT 537



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+   +E A  L  EM+ +G  PDV  +  L  G  ++  +  A + FDEM   G
Sbjct: 425 LIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKG 484

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I      G   ++ +L   + +     D   Y+ +IDGLCK+G L+ A 
Sbjct: 485 LQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAK 544

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +IH     G + +A  L   M  + + P+V+T+  LIH  
Sbjct: 545 DLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTC 604

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
            R            KM +  + P+    ++++  L +   +L
Sbjct: 605 CRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTL 646



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K++++E A   ++EM + G+ PD++ +N++  G  +   ++ A  L  +++R G
Sbjct: 355 IIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY   IDG C+ G + E+  L   +    C  D+  Y+ L++G  K   L +A 
Sbjct: 415 LAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAR 474

Query: 122 ELFHS-LPRGV----------------------------------LVADVVTYSIMIHGL 146
           E F   L +G+                                  +  D VTY+++I GL
Sbjct: 475 EFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGL 534

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +  A DL + M  + + P+ IT+  LIH        S+  +LL+ M    + P  
Sbjct: 535 CKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSV 594

Query: 207 SIVSIVV 213
              +I++
Sbjct: 595 VTYTILI 601



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 90/191 (47%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  L   M+ KGI PD V +N +  GL +   ++ A  L  +M  DG+  D  TYT  I 
Sbjct: 508 AFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIH 567

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C+ G + E+ +L   +     +  +  Y+ LI   C+ G L  A   F  +    +  
Sbjct: 568 AHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEP 627

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + +TY+++IH L   G+   A+  F +M E  +APN  T+  LI G  R    +  I L 
Sbjct: 628 NEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLY 687

Query: 195 HKMKEKNVMPD 205
            +M +  + PD
Sbjct: 688 FEMHQNGIPPD 698



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I+   +   +E A  L   M LSK  K     +N L   L E   V++   L  EM+ 
Sbjct: 285 VVISFLAREGHLENAAKLVDSMRLSK--KASSFTYNPLITALLERGFVQKVEALQMEMEN 342

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G+     TY   I GL K+  +  +   F  +R +    D+  Y+ +++G CK+G L+ 
Sbjct: 343 EGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKE 402

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL L   L R  L   V+TY+ +I G    G +++A  L  +M E    P+V T+  L++
Sbjct: 403 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMN 462

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G  ++       E   +M  K + PD
Sbjct: 463 GSHKVRNLPMAREFFDEMLSKGLQPD 488



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 3/199 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--QRDGVAADTRTYTIFIDG 75
           +Y EML   I+P +V +NTL     +  + + A  L  EM  Q  G   +  TY + I  
Sbjct: 230 VYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISF 289

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + G++  + +L  ++R+ K +     Y+ LI  L + G ++    L   +    ++  
Sbjct: 290 LAREGHLENAAKLVDSMRLSK-KASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPT 348

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           +VTY+ +IHGL    Q++ A   F +M    + P++IT+ ++++G+ +     + + LL 
Sbjct: 349 LVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLG 408

Query: 196 KMKEKNVMPDASIVSIVVD 214
            ++   + P     + ++D
Sbjct: 409 DLRRAGLAPTVLTYNTLID 427



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G+ PDV   N +   L +  + +    ++ EM +  +     TY   +D   K G   E+
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEA 262

Query: 86  VELFRTLRIL--KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
             L + +      C L+   Y+ +I  L + G LE A +L  S+ R    A   TY+ +I
Sbjct: 263 SMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSM-RLSKKASSFTYNPLI 321

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L   G + K   L ++ME   + P ++T+  +IHG ++  +         +M+   ++
Sbjct: 322 TALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLL 381

Query: 204 PD 205
           PD
Sbjct: 382 PD 383



 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 5/163 (3%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA D R     +  L       +   ++R +  L+ E  I  Y+ L+D   K GR + A
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEA 262

Query: 121 LELFHSLPR---GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             L   +     G L+ DV TY+++I  L  +G ++ A  L   M  +  A +  T+  L
Sbjct: 263 SMLLKEMETQGGGCLLNDV-TYNVVISFLAREGHLENAAKLVDSMRLSKKASS-FTYNPL 320

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I   +      KV  L  +M+ + +MP     + ++  L K+E
Sbjct: 321 ITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSE 363


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 143 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 202

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY++ I+GLCK   +  + ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 203 GXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLA 262

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AHDL  +M    + P+  T+ TLI G
Sbjct: 263 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDG 322

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +         +M ++N+  D    + ++  L +   S+++
Sbjct: 323 CCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDA 367



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G  PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 179 LMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKG 238

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 239 LVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 298

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G +D A      M +  +  + + +  LI G 
Sbjct: 299 DLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGL 358

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PDA   +++++   K 
Sbjct: 359 CQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKK 396



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 249 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKG 308

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  +    + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 309 LKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 368

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           ++   +    L  D  TY+++I+     G + K   L  +M
Sbjct: 369 KMLREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 113 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 172

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++       DV TYS++I+GL  + +MD A++LF 
Sbjct: 173 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFD 232

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 233 EMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 277



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 129 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 188

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  +   P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 189 LDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTT 248

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 249 LIDGHCKN 256


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 123/223 (55%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  +E A+  + +M+ +G+ P  +++N+L  GL   ++ ERA +L  EM   G+  +T
Sbjct: 309 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 368

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   ID  CK G ++ES +LF  +  +  + DI  YS LIDG C +G+++ A +L  S
Sbjct: 369 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 428

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTYS +I+G     +M  A  LF +ME + V+P++IT+  ++ G  +   
Sbjct: 429 MVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRR 488

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + +     + S  +I++  L KN+++ ++L  F
Sbjct: 489 TAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMF 531



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 117/216 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++ AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  + + G
Sbjct: 444 LINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSG 503

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    +++ +F+ L ++  +L+ + ++ +ID L K GR + A 
Sbjct: 504 RQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 563

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV +  TY +M   +   G +++   LFL ME+N    +      ++   
Sbjct: 564 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 623

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  E ++    L  + EK+   +AS  S+ +DLL+
Sbjct: 624 LQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLS 659



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++   + Y+EML + I P+VV +N++   L +   V++A ++   M + G
Sbjct: 94  VINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 153

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   + G C +G   E++   + +R    E D+  Y+ L+D LCK+GR   A 
Sbjct: 154 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEAR 213

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + PN   F  L+  +
Sbjct: 214 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAY 273

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + P+A     V+ +L K+
Sbjct: 274 AKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 311



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L + M+S G+KPD V ++TL  G  +I +++ A  LF EM+  G
Sbjct: 409 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSG 468

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 469 VSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDAL 528

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF+    N + PN  T+  +    
Sbjct: 529 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 588

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
           I      ++ +L   M++     D+ +++ +V +LL + EI+
Sbjct: 589 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 630



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   + E A  L  EML +GI  + +  N++     +  +V  + KLFD M R G
Sbjct: 339 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  IDG C  G + E+ +L  ++  +  + D   YS LI+G CK  R++ AL
Sbjct: 399 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDAL 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D++TY+I++ GL+   +   A +L++ + ++     + T+  ++HG 
Sbjct: 459 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGL 518

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       + +   +   ++  +A   +I++D L K
Sbjct: 519 CKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLK 555



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 9/177 (5%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-----CELDIQ 102
           E A  +FDE+ R G+  D  +Y I ++GLC      E++EL   L I+      C  D+ 
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALEL---LHIMADDGGDCPPDVV 89

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +YS +I+G  K G L+     ++ +    +  +VVTY+ +I  L     +DKA ++   M
Sbjct: 90  SYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 149

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ V P+ +T+ +++HGF    +P + I  L KM+   V PD    + ++D L KN
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 206



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+G
Sbjct: 199 LMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I +    K   + E++ +F  +R      +   Y  +I  LCKSGR+E A+
Sbjct: 259 IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +    L    + Y+ +IHGL    + ++A +L L+M +  +  N I F ++I   
Sbjct: 319 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 378

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               R+ E  K+ +L+ ++    V PD    S ++D
Sbjct: 379 CKEGRVIESEKLFDLMVRI---GVKPDIITYSTLID 411



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 124/251 (49%), Gaps = 24/251 (9%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG--VAADTRTYT 70
           E A +++ E+L +GI PDV  +N L  GL + ++ + A +L   M  DG     D  +Y+
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             I+G  K G + ++   +  +   +   ++  Y+ +I  LCK+  ++ A+E+  ++ + 
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            ++ D +TY+ ++HG  + GQ  +A      M  + V P+V+T+ +L+    +    ++ 
Sbjct: 153 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 212

Query: 191 IELLHKMKEKNVMPDASIVSI----------------VVDLLAKNEISLNSLPSFTV--- 231
            ++   M ++ + P+ +                    ++DL+ +N I  N    F++   
Sbjct: 213 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY-VFSILVC 271

Query: 232 -HERQEEVDES 241
            + +QE+V+E+
Sbjct: 272 AYAKQEKVEEA 282



 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 56/120 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKNK  + AL ++  +    +K +    N +   L ++ + + A  LF     +
Sbjct: 513 IILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 572

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY +  + +   G + E  +LF ++    C +D    + ++  L + G +  A
Sbjct: 573 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 632


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI+ A +++  +   G++P  V  NTL  G   +  ++  F+L + MQ  
Sbjct: 141 ILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   +  + ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ +T+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L + M + G++PDV  ++ L  GL +  +++ A +LF+EM  +G
Sbjct: 177 LMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D VTY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L++EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +L+ +M+    +P
Sbjct: 391 FCKKGDVWTGSKLMKEMQRDGYVP 414



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 62/116 (53%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+   CK G +++A  +F ++ +  L    V+++ +++G    G +D+   L   M+
Sbjct: 139 FNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++     EL ++M +  ++P+    + ++D   KN
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKN 254



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/155 (18%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  +  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +         A +  ++I++H    +G++  A  +F  + +  + P  ++F TL++G+IR
Sbjct: 124 YEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L + M+   V PD    S++++ L K
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCK 218


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  +I  AL+++  +   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 145 ILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 204

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 205 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 264

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ I++ TLI G
Sbjct: 265 MEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDG 324

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 325 CCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDA 369



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 100/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM+  G
Sbjct: 251 LIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKG 310

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +YT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 311 LKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAE 370

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G +     L  +M+ +   P+V+T+  L++G
Sbjct: 371 KMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 112/214 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 215 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQ 274

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   +R+   + D  +Y+ LIDG CK G LE A
Sbjct: 275 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETA 334

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 335 FEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINE 394

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +     +LL +M+    +P     +++++
Sbjct: 395 FCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 428



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 181 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 240

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 241 LVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 300

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D ++Y+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 301 DLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGL 360

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 361 CQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKK 398



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK G I  ++ +F  +        
Sbjct: 115 LMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPS 174

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 175 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 234

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 235 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPD 279



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/217 (18%), Positives = 96/217 (44%), Gaps = 17/217 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C ++ +  A NL   ++S+  K      + +F  + E    +R+           
Sbjct: 23  MIHFLCTHQMLPEAKNLIQVVVSRKGKNSA---SAVFAAILETQGTQRS----------- 68

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++  
Sbjct: 69  ---DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVW 125

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  +      A +  ++I++H    +G +  A  +F  + +  + P+V++F TL++G+
Sbjct: 126 XFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGY 185

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           IR+ +  +   L   M    V PD    S++++ L K
Sbjct: 186 IRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 222


>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
          Length = 462

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 13/230 (5%)

Query: 1   ILINGYCKNKEIEGAL-------------NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV 47
           +L++GYC   ++E AL             N+  EML KGIKP  +++N +  GLFE  + 
Sbjct: 209 MLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGEMLQKGIKPSTILYNIIIDGLFEAGRT 268

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
             A   F EM   G+A +  TY+I + GL KN    E++ LF+ LR +  ++DI   + +
Sbjct: 269 VPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTM 328

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           I G+ ++ R+E A +LF S+ R  LV   VTYSIMI  L  +G +++A D+F  M+    
Sbjct: 329 IAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 388

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            P+      ++   ++ NE  +    L K+ E+N   +     ++VDL +
Sbjct: 389 EPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFS 438



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 17/235 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y     ++ A+ +++EM   G+KP VV + T+   L  I +++ A + F++M   
Sbjct: 69  VLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ 128

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D   Y   I G C +G ++++ EL   +      LDI  +  +I+ LCK GR+  A
Sbjct: 129 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDA 188

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV--------- 171
             +F       L  D V Y++++ G    G+M+KA  +F  M    + PNV         
Sbjct: 189 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGEMLQKGI 248

Query: 172 ----ITFGTLIHGFIRINE--PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               I +  +I G        P+KV    H+M E  +  +    SIV+  L KN 
Sbjct: 249 KPSTILYNIIIDGLFEAGRTVPAKV--KFHEMTESGIAMNKCTYSIVLRGLFKNR 301



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 2/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NGY     +    +L+  ML  GI PD+   N L         +++A  +F+EM+  
Sbjct: 34  IMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH 93

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY   I  LC+ G + +++E F  +       D  AY CLI G C  G L  A
Sbjct: 94  GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA 153

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
            EL   +    +  D+V +  +I+ L   G++  A ++F D+  N  + P+ + +  L+ 
Sbjct: 154 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMD 212

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G+  + +  K + +   M    + P+
Sbjct: 213 GYCLVGKMEKALRVFDAMVSAGIEPN 238



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 103/220 (46%), Gaps = 3/220 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  +I+   +++  M  KG  PDV  +  +  G      +     LFD M  DG+A D 
Sbjct: 5   CKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 64

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+ + I      G + +++ +F  +R    +  +  Y  +I  LC+ G+++ A+E F+ 
Sbjct: 65  YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQ 124

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +V D   Y  +I G    G + KA +L  ++  N +  +++ FG++I+   ++  
Sbjct: 125 MIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGR 184

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVD---LLAKNEISL 223
                 +        + PDA + ++++D   L+ K E +L
Sbjct: 185 VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 224



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 72/130 (55%)

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LCK G I E  ++F T+ +     D+ +Y+ +++G    G L    +LF  +    +  D
Sbjct: 4   LCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 63

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           + T++++I    N G +DKA  +F +M ++ V P+V+T+ T+I    RI +    +E  +
Sbjct: 64  IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFN 123

Query: 196 KMKEKNVMPD 205
           +M ++ V+PD
Sbjct: 124 QMIDQGVVPD 133



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LCK G+++   ++F ++       DV +Y+IM++G    G +    DLF  M  + +AP+
Sbjct: 4   LCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 63

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + TF  LI  +       K + + ++M++  V P       V+  L +
Sbjct: 64  IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 111


>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
 gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
          Length = 382

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK K     L  +  M   GI  D VI+  L  GL++  ++++A  +  EM+  
Sbjct: 18  ILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWKEKRLDQALAILHEMRDH 77

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE-- 118
           G   +  TY   IDGLCKN     + ELF  ++ ++C   +  Y+ L+DGL  +G+LE  
Sbjct: 78  GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECS-PLVTYNTLLDGLFWTGKLESA 136

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +A+EL  S+       DV+T +I++ GL  + ++  A ++  +M +    PN++T  +L+
Sbjct: 137 MAVELLESMKARGCSPDVITSTILVDGLCKESKVAAAWEVLCEMLDAGCVPNLVTSKSLL 196

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           HG  R    S  + L+  M  +   P+      ++D L K
Sbjct: 197 HGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 236



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 123/281 (43%), Gaps = 53/281 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF--KLFDEMQR 59
           LI+G CKN E + A  L+  M S    P +V +NTL  GLF   ++E A   +L + M+ 
Sbjct: 89  LIDGLCKNNEPDRAQELFEHMKSVECSP-LVTYNTLLDGLFWTGKLESAMAVELLESMKA 147

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVE-------------------------------- 87
            G + D  T TI +DGLCK   +  + E                                
Sbjct: 148 RGCSPDVITSTILVDGLCKESKVAAAWEVLCEMLDAGCVPNLVTSKSLLHGLCRARRVSD 207

Query: 88  ---LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
              L R +    C  ++  Y  LIDGLCK GR++ A  L+  +      ADVVTYS +I 
Sbjct: 208 ALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLID 267

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH---GFIRINEPSKVIELLHKMKEKN 201
           GL   G++D+AH L   M       + +T+  L H     ++++   K + +  +  EK 
Sbjct: 268 GLCKGGRVDEAHLLLARMVRMGTPSSTLTY-NLQHFEGKMVKVDSLEKGMAIHIQAAEKG 326

Query: 202 VMPDASIVSIVVDLLAK-----------NEISLNSLPSFTV 231
              D  + + +VD+ AK             +  +SL S+TV
Sbjct: 327 YKRDDFLSNTLVDMYAKCGSMVEAERVFRSMPCHSLVSWTV 367



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++  A  +  EML  G  P++V   +L  GL    +V  A  L  +M   
Sbjct: 159 ILVDGLCKESKVAAAWEVLCEMLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCR 218

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   IDGLCK G + ++  L+  +    C+ D+  YS LIDGLCK GR++ A
Sbjct: 219 GCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLIDGLCKGGRVDEA 278

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
             L   + R    +  +TY++     + +G+M K   L
Sbjct: 279 HLLLARMVRMGTPSSTLTYNLQ----HFEGKMVKVDSL 312



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 54  FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           FDEM+ + +  +    +I IDGLCK    ++ +  FRT++      D   Y+ L+ GL K
Sbjct: 1   FDEMRSNNMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWK 60

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
             RL+ AL + H +       +VVTY+ +I GL  + + D+A +LF  M+    +P ++T
Sbjct: 61  EKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSP-LVT 119

Query: 174 FGTLIHGFIRIN--EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + TL+ G       E +  +ELL  MK +   PD    +I+VD L K
Sbjct: 120 YNTLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCK 166


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 124/225 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + + H L  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDA 371



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++   L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+   
Sbjct: 243 LVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 HLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PDA   +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKK 400



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ VI  TL  G  +  +V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + +   L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN + F TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  ++  A  ++ EM   G+ P+ V +  L  G F   Q E+ F LF+EM+R G
Sbjct: 44  LVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG 103

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I   C+ G    +  LF  + +     ++ +Y+ LI GLC+ G+L  A 
Sbjct: 104 VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAA 163

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        ++T+++++ G    G+M  A   F  M+     P+ +T+  LI GF
Sbjct: 164 KLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGF 223

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  + ++    L  MKE+ + P     +I++D  A+
Sbjct: 224 CRARDMTRANRALSDMKERGLEPTKVTYTILIDSFAR 260



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY  + + E    L+ EM   G++P++  +N L        + ERA  LFDEM   G
Sbjct: 79  LMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRG 138

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y   I GLC++G + ++ +L   +R       I  ++ L+DG  K+G++  AL
Sbjct: 139 IVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNAL 198

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +         VTY+++I G      M +A+    DM+E  + P  +T+  LI  F
Sbjct: 199 PFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSF 258

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            R N   K  E+L  M++  +  DA    ++V  L
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRAL 293



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 2/225 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GY K  ++  AL  +++M + G +P  V +N L  G      + RA +   +M+  
Sbjct: 183 LLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKER 242

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYTI ID   +  ++ ++ E+   +     E+D   Y  L+  LC  G ++ A
Sbjct: 243 GLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDA 302

Query: 121 LELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +LF S+  +GV  ++V+ Y +MI+G   +G   KA  L ++M +  + PN  ++G  I 
Sbjct: 303 RKLFQSMGEKGVEPSNVI-YDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIR 361

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
              + ++  +   LL  M    +    SI   ++D  A+   S N
Sbjct: 362 VLCKDDKCQEAEALLDDMVRAGLQTSESICQALLDAKARLRGSAN 406



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +C+  E E A +L+ EM  +GI  +VV +NTL  GL    ++  A KL D M+ +G
Sbjct: 114 LIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEG 173

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS------- 114
                 T+ + +DG  K G +  ++  F  ++    +     Y+ LI G C++       
Sbjct: 174 TRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRAN 233

Query: 115 ----------------------------GRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                         +  A E+   + +  L  D  TY +++  L
Sbjct: 234 RALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRAL 293

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G M  A  LF  M E  V P+ + +  +I+G+ R     K ++L+ +M++K ++P++
Sbjct: 294 CMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNS 353

Query: 207 SIVSIVVDLLAKNE 220
           +   + + +L K++
Sbjct: 354 ASYGLTIRVLCKDD 367



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 9/212 (4%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKP-----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           C   ++  AL     ML++G K      DV     L  G  +   V  A ++FDEM   G
Sbjct: 13  CAAGDVRSAL----AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG 68

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYT  + G   +G   +   LF  +R    E ++  Y+CLI   C++G  E A 
Sbjct: 69  LAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERAR 128

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +P   +V +VV+Y+ +I GL   G++  A  L   M      P++ITF  L+ G+
Sbjct: 129 SLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY 188

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  + S  +   ++MK     P A   ++++
Sbjct: 189 GKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 47  VERAFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           V  A  +     + G AA D    T  ++G CK G + E+  +F  + +L    +   Y+
Sbjct: 18  VRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYT 77

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            L+ G    G+ E    LF  + RG +  ++ TY+ +I      G+ ++A  LF +M   
Sbjct: 78  ALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVR 137

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  NV+++ TLI G  R  +     +LL  M+ +   P     +++VD   K     N+
Sbjct: 138 GIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNA 197

Query: 226 LPSF 229
           LP F
Sbjct: 198 LPFF 201


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 108/204 (52%), Gaps = 4/204 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+N ++E A  ++  M  +    + V +  L  GL E  ++  A + +  M+ DG
Sbjct: 230 LVLGYCRNDDVERACGVFCVMPRR----NAVSYTNLIHGLCEAGKLHEALEFWARMREDG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                RTYT+ +  LC++G  +E++ LF  +R   CE ++  Y+ LID LCK GR++ AL
Sbjct: 286 CFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEAL 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +    +   VV ++ +I      G M+ A  +   ME   V PNV T+  LI GF
Sbjct: 346 KMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGF 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     + + LL+KM E  + PD
Sbjct: 406 CRGKSMDRAMALLNKMVESKLSPD 429



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 116/204 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+ K ++ A+ L ++M+   + PDVV +NTL  GL E+  V+ A +LF  M RDG
Sbjct: 401 LICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDG 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  T+  F+  LC+ G + E+ ++  +L+    + +  AY+ LIDG CK+G++E A 
Sbjct: 461 FSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAA 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +     + + +T+++MI GL  +G++  A  L  DM +  V P + T+  L+   
Sbjct: 521 SLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEV 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++  +  +  E+L+++      P+
Sbjct: 581 LKEYDFDRANEILNRLISSGYQPN 604



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKN-KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L+   C++ +E+E AL+L+ EM  +G +P+V  +  L   L +  +++ A K+ +EM  
Sbjct: 295 VLVCALCESGRELE-ALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVE 353

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GVA     +   I   CK G + ++V +   +   K   +++ Y+ LI G C+   ++ 
Sbjct: 354 KGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDR 413

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ L + +    L  DVVTY+ +IHGL   G +D A  LF  M  +  +P+  TF   + 
Sbjct: 414 AMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMV 473

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              R+    +  ++L  +KEK+V  +    + ++D   K
Sbjct: 474 CLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCK 512



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 95/204 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+  ++  AL  ++ M   G  P V  +  L   L E  +   A  LF EM+  G
Sbjct: 261 LIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERG 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT+ ID LCK G + E++++   +        +  ++ LI   CK G +E A+
Sbjct: 321 CEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAV 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  +V TY+ +I G      MD+A  L   M E+ ++P+V+T+ TLIHG 
Sbjct: 381 GVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGL 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             +        L   M      PD
Sbjct: 441 CEVGVVDSASRLFRLMIRDGFSPD 464



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 100/213 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK   +E A+ +   M SK + P+V  +N L  G      ++RA  L ++M    
Sbjct: 366 LIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESK 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   I GLC+ G +  +  LFR +       D   ++  +  LC+ GR+  A 
Sbjct: 426 LSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAH 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++  SL    + A+   Y+ +I G    G+++ A  LF  M      PN ITF  +I G 
Sbjct: 486 QILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL 545

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  +    + L+  M + +V P     +I+V+
Sbjct: 546 RKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVE 578



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK   ++ AL + +EM+ KG+ P VV  N L     +   +E A  +   M+  
Sbjct: 330 VLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESK 389

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  + RTY   I G C+   +  ++ L   +   K   D+  Y+ LI GLC+ G ++ A
Sbjct: 390 KVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSA 449

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + R     D  T++  +  L   G++ +AH +   ++E  V  N   +  LI G
Sbjct: 450 SRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDG 509

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +      L  +M  +  +P++   ++++D L K
Sbjct: 510 YCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRK 547



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 11/198 (5%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD---GVAADTRTYTIFIDGLCKNGYI 82
             K  +  +N L + L     V+    L+ EM  D    V  +  T    ++  CK G +
Sbjct: 146 AFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNM 205

Query: 83  VESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
             +   F  +RIL+CE   D+  Y+ L+ G C++  +E A  +F  +PR     + V+Y+
Sbjct: 206 AVARLFF--VRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPR----RNAVSYT 259

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +IHGL   G++ +A + +  M E+   P V T+  L+          + + L  +M+E+
Sbjct: 260 NLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRER 319

Query: 201 NVMPDASIVSIVVDLLAK 218
              P+    ++++D L K
Sbjct: 320 GCEPNVYTYTVLIDYLCK 337



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 8/213 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  +IE A +L+  ML++   P+ +  N +  GL +  +V+ A  L ++M +  
Sbjct: 506 LIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFD 565

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY I ++ + K      + E+   L     + ++  Y+  I   C  GRLE A 
Sbjct: 566 VKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAE 625

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    ++ D   Y+++I+     G +D A  +   M      P+ +T+  L+   
Sbjct: 626 EMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHL 685

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                   VIE   K     V  D S+ +I VD
Sbjct: 686 --------VIEKHKKEGSNPVGLDVSLTNISVD 710



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   +  A +LY  M   GI P  +IHN+L     ++     A  L D M    
Sbjct: 745 LINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECS 804

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQAYSCLIDGLCKSGRLEI 119
             A   +Y + I GL +     ++  +F +L  L+C    D  A+  LIDGL K+G ++ 
Sbjct: 805 HLAHLESYKLLICGLFEQMNKEKAEAVFCSL--LRCGYNYDEVAWKVLIDGLAKTGYVDQ 862

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGL 146
             EL + + +        TYS+++  L
Sbjct: 863 CSELLNLMEKNGCRLHPETYSMLMQEL 889



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 1/149 (0%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           LF++M   G   +  TY+  I+GLCK G +  +  L+  +R          ++ L+   C
Sbjct: 726 LFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCC 785

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K G    A+ L  S+     +A + +Y ++I GL+     +KA  +F  +       + +
Sbjct: 786 KLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEV 845

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKN 201
            +  LI G  +     +  ELL+ M EKN
Sbjct: 846 AWKVLIDGLAKTGYVDQCSELLNLM-EKN 873



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF------EIHQV-------- 47
           LI+G C+   ++ A  L+  M+  G  PD    N   + L       E HQ+        
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 48  ---------------------ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                E A  LF  M  +    ++ T+ + IDGL K G + +++
Sbjct: 496 VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAM 555

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   +     +  +  Y+ L++ + K    + A E+ + L       +VVTY+  I   
Sbjct: 556 LLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAY 615

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            + G++++A ++ + ++   V  +   +  LI+ +  +        +L +M      P  
Sbjct: 616 CSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSY 675

Query: 207 SIVSIVV 213
              SI++
Sbjct: 676 LTYSILM 682



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 8/219 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-FEIHQVERAFKLFDEMQR 59
           +LIN Y     ++ A  +   M   G +P  + ++ L   L  E H+ E +  +  ++  
Sbjct: 645 LLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSL 704

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             ++ D       ID      + + +V LF  +    C  ++  YS LI+GLCK GRL +
Sbjct: 705 TNISVDNTDIWSKID------FGITTV-LFEKMAECGCVPNLNTYSKLINGLCKVGRLNV 757

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L+H +  G +    + ++ ++      G   +A  L   M E +   ++ ++  LI 
Sbjct: 758 AFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLIC 817

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G        K   +   +       D     +++D LAK
Sbjct: 818 GLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +++  CK G + +A   F  + R     D+ TY+ ++ G   +  +++A  +F  M    
Sbjct: 195 MLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRR- 253

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
              N +++  LIHG     +  + +E   +M+E    P     +++V  L ++   L +L
Sbjct: 254 ---NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEAL 310

Query: 227 PSFTVHERQEEVDESNV 243
             F   E +E   E NV
Sbjct: 311 SLFG--EMRERGCEPNV 325


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A  ++  +   G+KP VV  NTL  G  ++  ++  F+L + M   
Sbjct: 141 ILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY++ I+GLCK   + E+ ELF  +       +   ++ LIDG CK+G+L++A
Sbjct: 201 GAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+G    G + +  DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   KM E+N+  D  + + ++  L K   S+++
Sbjct: 321 SCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDA 365



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN +++ A+ +Y ++LS+G+ PD++ +NTL  G  +   +++   L DEM   G
Sbjct: 247 LIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD   Y+ LI GLCK GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+I+++    +G ++    L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K   ++    L + M + G +PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 177 LMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI G CK G L+   
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTR 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M E  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD+   +IV++   KN
Sbjct: 357 CKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKN 394



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 105/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +++ A +++ ++   
Sbjct: 211 VLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TY   I G CK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 GLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    +    +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +++ 
Sbjct: 331 FEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  + +   +LL +M+    +P
Sbjct: 391 FCKNGDVNTGSKLLKEMQRDGHVP 414



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK G I  +  +F  +     +  
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++       DV TYS++I+GL  + +MD+AH+LF 
Sbjct: 171 VVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M E  + PN +TF TLI G  +  +    +E+  ++  + + PD
Sbjct: 231 EMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPD 275



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E FR  R  K  +       ++D L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G++  A  +F  + +  + P+V++F TL++G+I+
Sbjct: 124 YKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIK 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    +   L + M      PD    S++++ L K
Sbjct: 184 MGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCK 218


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 119/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +  +   E    +Y EM+ +G +PD+ + NT    +F+  +VE+   +F++M+  G
Sbjct: 496 LIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFG 555

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R+Y+I I GL K G   E+  +F+ +      LD +AY+ ++DGLCKSG+++ A 
Sbjct: 556 FLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAY 615

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +   V TY  ++ GL    ++D+A+ LF + +   +  NVI + +LI GF
Sbjct: 616 EVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGF 675

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   +L +M +K + P+    + ++D L K E
Sbjct: 676 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTE 714



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K   ++ A  L+ E  SKGI+ +V+++++L  G  ++ +++ A+ + +EM + G
Sbjct: 636 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKG 695

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ +KC  +   YS LI+GLC+  +   A 
Sbjct: 696 LTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAF 755

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  L+ +VVTY+ MI GL   G +  A+ LF   + N   P+  +F  LI G 
Sbjct: 756 VFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGM 815

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N P +  ++  + + +    +      ++D L K E
Sbjct: 816 SNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTE 854



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  E+E    ++ +M S G  PDV  ++ L  GL +  Q      +F  M
Sbjct: 527 LLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAM 586

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            + G A D R Y   +DGLCK+G + ++ E+   +++      +  Y  ++DGL K  RL
Sbjct: 587 SQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRL 646

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       +  +V+ YS +I G    G++D+A+ +  +M +  + PNV T+ +L
Sbjct: 647 DEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 706

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E  + +     MKE    P+    SI+++ L +
Sbjct: 707 MDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCR 747



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  +     N++  M  +G   D   +N +  GL +  +V++A+++ +EM+  
Sbjct: 565 ILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVK 624

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     TY   +DGL K   + E+  LF   +    EL++  YS LIDG  K GR++ A
Sbjct: 625 HVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEA 684

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  L  +V T++ ++  L    ++D+A   F  M+E   +PN  T+  LI+G
Sbjct: 685 YLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILING 744

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ + +K      +M+++ ++P+    + ++  LAK
Sbjct: 745 LCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAK 782



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK+ +++ A  +  EM  K + P V  + ++  GL +I +++ A+ LF+E +  G
Sbjct: 601 VVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKG 660

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   +       ++  ++ L+D L K+  ++ AL
Sbjct: 661 IELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEAL 720

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       +  TYSI+I+GL    + +KA   + +M++  + PNV+T+ T+I G 
Sbjct: 721 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGL 780

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++   +    L  + K    +PD++  + +++
Sbjct: 781 AKVGNITDAYSLFERFKTNGGIPDSASFNALIE 813



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K  +I+ A  L+ +ML  G   + +I+ +L    F   + E   K++ EM R G
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRG 520

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D      ++D + K G + +   +F  ++      D+++YS LI GL K+G+     
Sbjct: 521 GRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETS 580

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F ++ +     D   Y+ ++ GL   G++DKA+++  +M+   V P V T+G+++ G 
Sbjct: 581 NIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGL 640

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  + S ++D   K
Sbjct: 641 AKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    +++ +E A  +   M     +P    +  L   L E  Q ERA +L  +MQ  G
Sbjct: 147 LVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVG 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  +T  +  L + G +  ++ L   ++    E DI  Y+  ID   K+G +++A 
Sbjct: 207 YEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAW 266

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH L    L  D V+Y+ M+  L   G++ +A +LF  ME     P    + T+I G+
Sbjct: 267 KFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGY 326

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
                     +LL +++E+  +P     + ++  L K      +L  F V ++
Sbjct: 327 GSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK 379



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 1/211 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K ++++ AL L+ +++ K  KP++  +N +   L    +V  A+K+ DEM+  G+  +  
Sbjct: 363 KKRKVDEALTLF-DVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLL 421

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           +  I +D LCK   + E+  +F +     C  +   Y  LIDGL K G+++ A  LF  +
Sbjct: 422 SVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                 A+ + Y+ +I   +  G+ +  H ++ +M      P++    T +    +  E 
Sbjct: 482 LDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEV 541

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            K   +   MK    +PD    SI++  L K
Sbjct: 542 EKGRAIFEDMKSFGFLPDVRSYSILIHGLTK 572



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI    + ++ E AL L  +M   G +  V +  TL   L    Q+E A  L DE++  
Sbjct: 181 VLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGS 240

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y + ID   K G +  + + F  L+      D  +Y+ ++  LCK+GRL  A
Sbjct: 241 CLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEA 300

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +     V     Y+ MI G  +  + D A+ L   + E    P+V++F +++  
Sbjct: 301 EELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTC 360

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  +  + + L   MK K+  P+ S  +I++D+L
Sbjct: 361 LGKKRKVDEALTLFDVMK-KDAKPNISTYNIIIDML 395



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  C    +  A  +  EM   G+ P+++  N +   L + +Q+E A ++F+     
Sbjct: 390 IIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASER 449

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL---------------------------- 92
           G   ++ TY   IDGL K G I ++  LF  +                            
Sbjct: 450 GCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDG 509

Query: 93  -RILK------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +I K         D+   +  +D + K+G +E    +F  +     + DV +YSI+IHG
Sbjct: 510 HKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHG 569

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   GQ  +  ++F  M +   A +   +  ++ G  +  +  K  E+L +MK K+V P 
Sbjct: 570 LTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPT 629

Query: 206 ASIVSIVVDLLAK 218
            +    +VD LAK
Sbjct: 630 VATYGSIVDGLAK 642



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 66/120 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+ ++   A   + EM  +G+ P+VV + T+  GL ++  +  A+ LF+  + +
Sbjct: 740 ILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTN 799

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+ ++   I+G+      +E+ ++F   R+  C L+++    L+D L K+  LE A
Sbjct: 800 GGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTECLEQA 859



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 4/201 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L S   S+ + PD   +N +    F  H +    K+ +EM   G           +  L 
Sbjct: 97  LASASSSQPLPPDA--YNAVLP--FLSHDLAALEKVLEEMSHLGYGLPNPACAALVATLV 152

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           ++  + ++  +   +R LK      AY+ LI  L ++ + E ALEL   +        V 
Sbjct: 153 RSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVP 212

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            ++ ++  L  +GQM+ A  L  +++ + + P+++ +   I  F +        +  H++
Sbjct: 213 LFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHEL 272

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
           K   + PD    + +V +L K
Sbjct: 273 KAHGLRPDDVSYTSMVWVLCK 293


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G  +I  ++  F+L   MQ  
Sbjct: 141 ILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T+++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +  DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDA 365



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++   L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+     PN +T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L S M + G++PDV  H+ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E++R +       D+  Y+ LI GLCK G L+   
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXX 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  +   +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 101/205 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + +  +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D   Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F +  +     +LL +M+     P+
Sbjct: 391 FCKKGDVWTGSKLLKEMQRXGYXPN 415



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 83/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +   CK G I  +  +F ++        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L   +    +  DV T+S++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 231 EMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 60/116 (51%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+   CK G + +A  +F S+ +  L   VV+++ +++G    G +D+   L   M+
Sbjct: 139 FNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T   LI+G  + ++     EL  +M +  ++P+    + ++D   KN
Sbjct: 199 ASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKN 254


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 121/214 (56%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK+ +++ AL ++ +M  KG++ D+ ++ TL  G  ++  +E A K F ++   G
Sbjct: 612 LINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVG 671

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  Y I I        +  ++ L + +   K   D++ Y+ LIDGL K G+L  AL
Sbjct: 672 LTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFAL 731

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L+   L RG+ V D+  Y+++I+GL N GQ++ A  +  +M+ N + P V+ + TLI G
Sbjct: 732 DLYSEMLCRGI-VPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAG 790

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +     +   L  +M +K ++PD +   I+V+
Sbjct: 791 HFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 824



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 97/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK +++E A   +S++L  G+ P+ +++N +      ++ +E A  L  EM  + 
Sbjct: 647 LIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNK 706

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D + YT  IDGL K G +  +++L+  +       DI  Y+ LI+GLC  G+LE A 
Sbjct: 707 IPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAG 766

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    +   V+ Y+ +I G + +G + +A  L  +M +  + P+  T+  L++G
Sbjct: 767 KILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 117/224 (52%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+  ++  A NL+ +M+ KGI P +V +N + +G  +   ++ A ++ + +   G+  + 
Sbjct: 442 CELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNA 501

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ++G  K G    +  +F  +           ++ +I+GLCK GR+  A +  ++
Sbjct: 502 ITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNT 561

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
             +   +   +TY+ +I G   +G +D A  ++ +M  + ++PNVIT+ +LI+GF + N+
Sbjct: 562 FIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNK 621

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
               +++   MK K +  D ++ + ++    K +   N+   F+
Sbjct: 622 MDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFS 665



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G  K  + E A N++ +M++ GI P     N++  GL ++ +V  A    +   + 
Sbjct: 506 ILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQ 565

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                + TY   IDG  K G I  +  ++R +   +   ++  Y+ LI+G CKS ++++A
Sbjct: 566 SFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLA 625

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++   + R  L  D+  Y+ +I G      M+ A   F  + E  + PN I +  +I  
Sbjct: 626 LKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISA 685

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +N     + L  +M    +  D  I + ++D L K
Sbjct: 686 YRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLK 723



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 109/216 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   +  A +  +  + +   P  + +N +  G  +   ++ A  ++ EM R  
Sbjct: 542 IINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSE 601

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TYT  I+G CK+  +  ++++   ++    ELDI  Y+ LI G CK   +E A 
Sbjct: 602 ISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENAC 661

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  L    L  + + Y+IMI    N   M+ A +L  +M  N +  ++  + +LI G 
Sbjct: 662 KFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGL 721

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  + S  ++L  +M  + ++PD  + +++++ L 
Sbjct: 722 LKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLC 757



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 97/217 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  Y +  +I  A+  +  ML  G+ P V   N L   +   + VE A +LFDEM    
Sbjct: 158 LLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERR 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T  + +    K G  VE+   F        +LD  +YS +I  +C+   L++A 
Sbjct: 218 IYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLAS 277

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L         V    TY+ +I      G   +A  L  +M ++ V  NV    +LI G+
Sbjct: 278 KLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGY 337

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               + +  + L  ++ E  V P+ +I S++++  +K
Sbjct: 338 CVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSK 374



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 2/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC   ++  AL L+ E++  G+ P+V I + L     +I  VE+A +L+  M+  G
Sbjct: 333 LIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMG 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +          + G  K   ++E+  L     +      +  Y+ ++  LC+ G++  A 
Sbjct: 393 LQPTVFILNFLLKGFRKQN-LLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEAC 451

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    +   +V+Y+ MI G    G MD AH++   + E+ + PN IT+  L+ G 
Sbjct: 452 NLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGS 511

Query: 182 IRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEIS 222
            +  +      +  +M    ++P D +  SI+  L     +S
Sbjct: 512 FKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVS 553



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ Y     +E ALNL+ EM++  I  D+ I+ +L  GL +  ++  A  L+ EM   
Sbjct: 681 IMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCR 740

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + I+GLC +G +  + ++ + +        +  Y+ LI G  K G L+ A
Sbjct: 741 GIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEA 800

Query: 121 LELFHSLPRGVLVADVVTYSIMIHG 145
             L   +    LV D  TY I+++G
Sbjct: 801 FRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+    K  +   A   + +   +G+K D   ++ +   +     ++ A KL +  +  
Sbjct: 227 VLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEEL 286

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   I    + G   E++ L   +   +  +++   + LI G C  G +  A
Sbjct: 287 GWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSA 346

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +  +V  +S++I      G ++KA++L+  M+   + P V     L+ G
Sbjct: 347 LRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKG 406

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
           F + N       LL    E  +   AS+V+  + LL   E+ 
Sbjct: 407 FRKQNLLENAYLLLDGAVENGI---ASVVTYNIVLLWLCELG 445


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + E A ++  EM+ +G  PD   ++ +   L    ++E AF LF+EM+R G+ AD 
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI +D  CK G I ++ + F  +R + C  ++  Y+ LI    K+ ++  A ELF +
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF-----------LDM-----EENAVAPN 170
           +     + ++VTYS +I G    GQ++KA  +F           +DM     ++N+  PN
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L+ GF + +   +  +LL  M  +   P+  +   ++D L K
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGI---------------KPDVVIHNTLFIGLFEIH 45
           LI+G+CK  ++E A  ++  M  SK +               +P+VV +  L  G  + H
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +VE A KL D M  +G   +   Y   IDGLCK G + E+ E+   +        +  YS
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LID   K  R ++A ++   +       +VV Y+ MI GL   G+ D+A+ L   MEE 
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              PNV+T+  +I GF  I +    +ELL +M  K V P+     +++D   KN
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 827



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ +CK   IE A   ++EM   G  P+VV +  L     +  +V  A +LF+ M  +
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ----------------AY 104
           G   +  TY+  IDG CK G + ++ ++F  +   K   D+                  Y
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             L+DG CKS R+E A +L  ++       + + Y  +I GL   G++D+A ++  +M E
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +     + T+ +LI  + ++       ++L KM E +  P+  I + ++D L K
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  + +EM   G    +  +++L    F++ + + A K+  +M  + 
Sbjct: 680 LIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS 739

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  IDGLCK G   E+ +L + +    C+ ++  Y+ +IDG    G++E  L
Sbjct: 740 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCL 799

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  + VTY ++I     +G +D AH+L  +M++     +   +  +I GF
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E  + + LL ++ + +  P  S+  +++D L K +
Sbjct: 860 NK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 113/291 (38%), Gaps = 80/291 (27%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+    E A++  + M +    P+VV ++TL  G     Q+ R  ++ + M  +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
                + +   +   C +G    + +L +  +++KC                        
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLK--KMVKCGHMPGYVVYNILIGSICGDKDSLN 425

Query: 98  ----ELDIQAYSCLIDG---------------LCKSGR---------------------- 116
               +L  +AYS ++                 LC +G+                      
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 117 -------------LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
                        +E+A  LF  + RG LVADV TY+IM+      G +++A   F +M 
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           E    PNV+T+  LIH +++  + S   EL   M  +  +P+    S ++D
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 3/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  +C+N     AL     +     +P    +N L     +  +++ A  +  EM   
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLA 264

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T   F   LCK G   E++ L  T   +    D   Y+ LI GLC++   E A
Sbjct: 265 NLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVP---DTVFYTKLISGLCEASLFEEA 321

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +     + +VVTYS ++ G  N  Q+ +   +   M      P+   F +L+H 
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
           +    + S   +LL KM +   MP   + +I++  +  ++ SLN
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CKN  ++ A NL  EM           +  +  G F    +E +  L DE+ +D
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG-FNKEFIE-SLGLLDEIGQD 876

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQA-YSCLIDGLCKSGRLE 118
             A     Y + ID L K   +  ++ L   +      L D  + Y+ LI+ LC + ++E
Sbjct: 877 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVE 936

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            A +LF  + +  ++ ++ ++  +I GL+ + ++ +A
Sbjct: 937 TAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEM--LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           +LI+   K + +E AL L  E+   S  +      +N+L   L   ++VE AF+LF EM 
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 946

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           + GV  + +++   I GL +N  I E++ L 
Sbjct: 947 KKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           LI   C   ++E A  L+SEM  KG+ P++    +L  GLF   ++  A  L D
Sbjct: 925 LIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 114/205 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A ++++ +   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 141 ILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     E   +M ++N+  D
Sbjct: 321 XCKEGDLETAFEHRKRMIQENIQLD 345



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL     +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +     +LD   Y+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D +TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 106/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLC+ G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+ IT+  +I+ 
Sbjct: 331 FEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGQMP 414



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 177 LMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLC+ G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQAR 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 357 CQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKK 394



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 83/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F+++ +  L   VV+++ +++G    G 
Sbjct: 127 ILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGD 186

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M +K ++P+    + 
Sbjct: 187 LDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTT 246

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 247 LIDGHCKN 254



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V++F TL++G+IR
Sbjct: 124 YEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 184 LGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCK 218


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           L+ G+ KN  +  A  +Y EML KGIKPD   + T  +G   +   ++AF+L +EM   D
Sbjct: 487 LVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATD 546

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D   Y + IDGLCK G +V+++E  R +  +    D   Y+ +I G  ++G+ ++A
Sbjct: 547 HHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMA 606

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + R  L   V+TY ++I+G    G++++A     +M++  V PNV+T   L++G
Sbjct: 607 RNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYG 666

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +     +    L KM+E+ + P+    ++   L++KN
Sbjct: 667 MCKAGNIDEAYRYLCKMEEEGIPPNKYSYTM---LISKN 702



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK    + A  +  EML+ GI P    +N     L +  +++ A +L   M    
Sbjct: 351 LIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM---- 406

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  +Y   + G  K G  VE+  LF  LR       I  Y+ LIDGLC+SG LE A 
Sbjct: 407 AAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQ 466

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +   ++  DV+TY+ ++ G   +G +  A +++ +M    + P+   + T   G 
Sbjct: 467 RLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE 526

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAK 218
           +R+ +  K   L  +M    +  PD +I ++ +D L K
Sbjct: 527 LRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCK 564



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  +Y  M+  GI P V+  NT+    F+   +ER  K++ EM+R  +     TY I I+
Sbjct: 259 ASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILIN 318

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G  KNG + E+      +R     +   +++ LI+G CK G  + A  +   +    +  
Sbjct: 319 GFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYP 378

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
              TY+I I  L + G++D A +L   M     AP+V+++ TL+HG+I++ +  +   L 
Sbjct: 379 TTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKFVEASLLF 434

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
             ++  ++ P     + ++D L ++
Sbjct: 435 DDLRAGDIHPSIVTYNTLIDGLCES 459



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 35/223 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G CK   +  A+    ++   G+ PD V + T+  G  E  Q + A  L+DEM R 
Sbjct: 557 VRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRK 616

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY + I G  K G + ++ +    ++      ++  ++ L+ G+CK+      
Sbjct: 617 RLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKA------ 670

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                                        G +D+A+     MEE  + PN  ++  LI  
Sbjct: 671 -----------------------------GNIDEAYRYLCKMEEEGIPPNKYSYTMLISK 701

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
                +  +V++L  +M +K + PD      +   L K+  S+
Sbjct: 702 NCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKDHESM 744



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 23/193 (11%)

Query: 46  QVERAFKLFDEMQRDGVAADTR-TYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQA 103
           + E AF+ F+ +QR      +R  +   ++ L +N  + E+  +  R++ +   E+D   
Sbjct: 135 KPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEAYLVAERSIDLGMHEID--- 191

Query: 104 YSCLIDG-----------------LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
              LIDG                   K    E  L  F  + R   +  V   +I++  L
Sbjct: 192 -DLLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVL 250

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            +   M+KA  ++  M E+ + P VITF T++    +  +  +V ++  +MK +N+    
Sbjct: 251 RDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSE 310

Query: 207 SIVSIVVDLLAKN 219
              +I+++  +KN
Sbjct: 311 VTYNILINGFSKN 323


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 1/235 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ +  ++  A+NL SE++S G++PD   ++ L  G  ++ +V+RA      M + G
Sbjct: 368 LIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRG 427

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+   Y   +  LC+ G + +++ LF  +  + C LD  AYS ++ G CKSG ++ A 
Sbjct: 428 IRAELFHYIPLLAALCQLGMMEQAMVLFNEMD-MNCGLDAVAYSTMMYGACKSGDIKAAK 486

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D VTYSI+I+     G +++A  +   M  +   P+V  F +LI G+
Sbjct: 487 QLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGY 546

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               + +K+++L+H+M+ KNV  D   +  +V L  +  +  ++  +      Q 
Sbjct: 547 SAEGQINKILDLIHEMRAKNVAIDPKFICTLVRLPQQMPLLWSATTALVARSHQS 601



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 37/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   E++GAL L  EM   G+ P+V++++ L  G     + +   K+F+EM R G
Sbjct: 156 LIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   +T FID LCK G I ++V++   +     E ++  Y+ LI+ LCK G +  AL
Sbjct: 216 VEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREAL 275

Query: 122 ELFHSLP-RGV---------LVA---------------------------DVVTYSIMIH 144
            L + +  +GV         L+A                           DVVT++ +IH
Sbjct: 276 ALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIH 335

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL   G+M +A  +   M E     N++T+  LI GF+R+++ +  + L+ ++    + P
Sbjct: 336 GLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEP 395

Query: 205 DASIVSIVVDLLAK 218
           D+   SI+++  +K
Sbjct: 396 DSFTYSILINGFSK 409



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 117/210 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G C ++  + A+ L   M + G++ DVV + TL  GL +  +++ A +L  EM   
Sbjct: 120 MVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGS 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   Y+  + G C++G   +  ++F  +  L  E D+  ++  ID LCK GR+  A
Sbjct: 180 GVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   + +  L  +VVTY+++I+ L  +G + +A  L  +M++  VAP+V+T+ TLI G
Sbjct: 240 VKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAG 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
              + E    + LL +M + + + +  +V+
Sbjct: 300 LSGVLEMDGAMGLLEEMIQGDTLVEPDVVT 329



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 38/255 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           +LIN  CK   +  AL L +EM  KG+ PDVV +NTL  GL  + +++ A  L +EM Q 
Sbjct: 260 VLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQG 319

Query: 60  DG-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           D  V  D  T+   I GLCK G + +++ +   +    C  ++  Y+ LI G  +  ++ 
Sbjct: 320 DTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVN 379

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHG--------------------------------- 145
           +A+ L   L    L  D  TYSI+I+G                                 
Sbjct: 380 MAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLL 439

Query: 146 --LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L   G M++A  LF +M+ N    + + + T+++G  +  +     +LL  M ++ + 
Sbjct: 440 AALCQLGMMEQAMVLFNEMDMNC-GLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLA 498

Query: 204 PDASIVSIVVDLLAK 218
           PDA   SI++++ AK
Sbjct: 499 PDAVTYSILINMFAK 513



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I+  CK   I  A+ +   M+ +G++P+VV +N L   L +   V  A  L +EM   GV
Sbjct: 227 IDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGV 286

Query: 63  AADTRTYTIFIDGLCK----NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           A D  TY   I GL      +G +    E+ +   ++  E D+  ++ +I GLCK GR+ 
Sbjct: 287 APDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLV--EPDVVTFNSVIHGLCKIGRMR 344

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ +   +     + ++VTY+ +I G     +++ A +L  ++  + + P+  T+  LI
Sbjct: 345 QAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILI 404

Query: 179 HGFIRINEPSKVIELLHKMKEKNV 202
           +GF ++ E  +    L  M ++ +
Sbjct: 405 NGFSKLWEVDRAEMFLRTMTQRGI 428



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 4/193 (2%)

Query: 30  DVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAA---DTRTYTIFIDGLCKNGYIVES 85
           D V +N +   L      + +A  L  +M R+   A   +  +YT+ + GLC +    E+
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           V L R+++      D+  Y  LI GLC +  L+ ALEL   +    +  +V+ YS ++ G
Sbjct: 135 VALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRG 194

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G+      +F +M    V P+VI F   I    +     K +++   M ++ + P+
Sbjct: 195 YCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPN 254

Query: 206 ASIVSIVVDLLAK 218
               +++++ L K
Sbjct: 255 VVTYNVLINCLCK 267



 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN + K  ++E A  +  +M + G  PDV + ++L  G     Q+ +   L  EM+  
Sbjct: 506 ILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRAK 565

Query: 61  GVAADTR 67
            VA D +
Sbjct: 566 NVAIDPK 572


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDA 365



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E++  +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPD 275



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 60/116 (51%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+    K G + +A  +F ++ +  L   VV+++ +++G    G +D+   L   M+
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++     EL  +M +  ++P+    + ++D   KN
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  +CK+ ++E A+ ++ EM S GI P+   +NTL +G      +  A KL + M+  
Sbjct: 221 MVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAK 280

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+  T+   IDG CK G + E+ ++F  +++L    +   Y+ LI+G  + G  E+ 
Sbjct: 281 GVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMG 340

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + R  + AD++TY+ +I GL  +G+  KA  +  ++++  + PN  TF  LI G
Sbjct: 341 RRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISG 400

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               N   +  +L   M      P+    +++V    KNE
Sbjct: 401 QCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNE 440



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 107/200 (53%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL  Y EM    I P+V   N +     +  ++E+A ++F+EM+  G++ +  +Y   I 
Sbjct: 200 ALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIM 259

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+ G +  +V+L  ++R    E ++  ++ LIDG CK G+L  A ++F  +    +  
Sbjct: 260 GYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAP 319

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + +TY+ +I+G    G  +    L+ +M  N V  +++T+  LI G  +  +  K   ++
Sbjct: 320 NTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMV 379

Query: 195 HKMKEKNVMPDASIVSIVVD 214
            ++ ++N++P+AS  S ++ 
Sbjct: 380 KELDKENLVPNASTFSALIS 399



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 102/196 (52%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K+   A + + +M   G  P V   N     L ++H+V+ A   + EM+R  ++ +  T 
Sbjct: 160 KKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTR 219

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
            + +   CK+G + ++V++F  +  +    +  +Y+ LI G C+ G L  A++L +S+  
Sbjct: 220 NMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRA 279

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             + A+VVT++ +I G   +G++ +A  +F +M+   VAPN IT+ TLI+G  ++     
Sbjct: 280 KGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEM 339

Query: 190 VIELLHKMKEKNVMPD 205
              L  +M    V  D
Sbjct: 340 GRRLYEEMSRNGVKAD 355



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 97/202 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++  A  ++SEM    + P+ + +NTL  G  ++   E   +L++EM R+G
Sbjct: 292 LIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNG 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD  TY   I GLCK G   ++  + + L       +   +S LI G C     + A 
Sbjct: 352 VKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAF 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+ S+ R     +  T+++++     +   + A  + ++M E    P       + HG 
Sbjct: 412 QLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLSEIYHGL 471

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
               +    ++L  ++K +++M
Sbjct: 472 CCCGKEHLAMKLSSELKARHMM 493



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 55/103 (53%)

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R++IAL  +  + R  +  +V T ++++      G+++KA  +F +ME   ++PN  ++ 
Sbjct: 196 RVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYN 255

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           TLI G+ R    +  ++L + M+ K V  +    + ++D   K
Sbjct: 256 TLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCK 298


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + E A ++  EM+ +G  PD   ++ +   L    ++E AF LF+EM+R G+ AD 
Sbjct: 418 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 477

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI +D  CK G I ++ + F  +R + C  ++  Y+ LI    K+ ++  A ELF +
Sbjct: 478 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 537

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF-----------LDM-----EENAVAPN 170
           +     + ++VTYS +I G    GQ++KA  +F           +DM     ++N+  PN
Sbjct: 538 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 597

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L+ GF + +   +  +LL  M  +   P+  +   ++D L K
Sbjct: 598 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 645



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGI---------------KPDVVIHNTLFIGLFEIH 45
           LI+G+CK  ++E A  ++  M  SK +               +P+VV +  L  G  + H
Sbjct: 553 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 612

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +VE A KL D M  +G   +   Y   IDGLCK G + E+ E+   +        +  YS
Sbjct: 613 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 672

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LID   K  R ++A ++   +       +VV Y+ MI GL   G+ D+A+ L   MEE 
Sbjct: 673 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 732

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              PNV+T+  +I GF  I +    +ELL +M  K V P+     +++D   KN
Sbjct: 733 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 786



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ +CK   IE A   ++EM   G  P+VV +  L     +  +V  A +LF+ M  +
Sbjct: 482 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 541

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ----------------AY 104
           G   +  TY+  IDG CK G + ++ ++F  +   K   D+                  Y
Sbjct: 542 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 601

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             L+DG CKS R+E A +L  ++       + + Y  +I GL   G++D+A ++  +M E
Sbjct: 602 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 661

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +     + T+ +LI  + ++       ++L KM E +  P+  I + ++D L K
Sbjct: 662 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 715



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  + +EM   G    +  +++L    F++ + + A K+  +M  + 
Sbjct: 639 LIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS 698

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  IDGLCK G   E+ +L + +    C+ ++  Y+ +IDG    G++E  L
Sbjct: 699 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCL 758

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  + VTY ++I     +G +D AH+L  +M++     +   +  +I GF
Sbjct: 759 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 818

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E  + + LL ++ + +  P  S+  +++D L K +
Sbjct: 819 NK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 855



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 113/291 (38%), Gaps = 80/291 (27%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+    E A++  + M +    P+VV ++TL  G     Q+ R  ++ + M  +G
Sbjct: 267 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 326

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
                + +   +   C +G    + +L +  +++KC                        
Sbjct: 327 CYPSPKIFNSLVHAYCTSGDHSYAYKLLK--KMVKCGHMPGYVVYNILIGSICGDKDSLN 384

Query: 98  ----ELDIQAYSCLIDG---------------LCKSGR---------------------- 116
               +L  +AYS ++                 LC +G+                      
Sbjct: 385 FDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 444

Query: 117 -------------LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
                        +E+A  LF  + RG LVADV TY+IM+      G +++A   F +M 
Sbjct: 445 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 504

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           E    PNV+T+  LIH +++  + S   EL   M  +  +P+    S ++D
Sbjct: 505 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 555



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 3/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  +C+N     AL     +     +P    +N L     +  +++ A  +  EM   
Sbjct: 164 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLA 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T   F   LCK G   E++ L  T   +    D   Y+ LI GLC++   E A
Sbjct: 224 NLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVP---DTVFYTKLISGLCEASLFEEA 280

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +     + +VVTYS ++ G  N  Q+ +   +   M      P+   F +L+H 
Sbjct: 281 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 340

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
           +    + S   +LL KM +   MP   + +I++  +  ++ SLN
Sbjct: 341 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 384



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CKN  ++ A NL  EM           +  +  G F    +E +  L DE+ +D
Sbjct: 778 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG-FNKEFIE-SLGLLDEIGQD 835

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQA-YSCLIDGLCKSGRLE 118
             A     Y + ID L K   +  ++ L   +      L D  + Y+ LI+ LC + ++E
Sbjct: 836 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVE 895

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
            A +LF  + +  ++ ++ ++  +I GL+ + ++ +A  L LD   + V P
Sbjct: 896 TAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL-LLLDFISHMVCP 945



 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM--LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           +LI+   K + +E AL L  E+   S  +      +N+L   L   ++VE AF+LF EM 
Sbjct: 846 LLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 905

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           + GV  + +++   I GL +N  I E++ L   +  + C L
Sbjct: 906 KKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVCPL 946


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + E A ++  EM+ +G  PD   ++ +   L    ++E AF LF+EM+R G+ AD 
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI +D  CK G I ++ + F  +R + C  ++  Y+ LI    K+ ++  A ELF +
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF-----------LDM-----EENAVAPN 170
           +     + ++VTYS +I G    GQ++KA  +F           +DM     ++N+  PN
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L+ GF + +   +  +LL  M  +   P+  +   ++D L K
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGI---------------KPDVVIHNTLFIGLFEIH 45
           LI+G+CK  ++E A  ++  M  SK +               +P+VV +  L  G  + H
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +VE A KL D M  +G   +   Y   IDGLCK G + E+ E+   +        +  YS
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LID   K  R ++A ++   +       +VV Y+ MI GL   G+ D+A+ L   MEE 
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              PNV+T+  +I GF  I +    +ELL +M  K V P+     +++D   KN
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 827



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++ +CK   IE A   ++EM   G  P+VV +  L     +  +V  A +LF+ M  +
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ----------------AY 104
           G   +  TY+  IDG CK G + ++ ++F  +   K   D+                  Y
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             L+DG CKS R+E A +L  ++       + + Y  +I GL   G++D+A ++  +M E
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +     + T+ +LI  + ++       ++L KM E +  P+  I + ++D L K
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ A  + +EM   G    +  +++L    F++ + + A K+  +M  + 
Sbjct: 680 LIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS 739

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  IDGLCK G   E+ +L + +    C+ ++  Y+ +IDG    G++E  L
Sbjct: 740 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCL 799

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  + VTY ++I     +G +D AH+L  +M++     +   +  +I GF
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  E  + + LL ++ + +  P  S+  +++D L K +
Sbjct: 860 NK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 113/291 (38%), Gaps = 80/291 (27%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+    E A++  + M +    P+VV ++TL  G     Q+ R  ++ + M  +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
                + +   +   C +G    + +L +  +++KC                        
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLK--KMVKCGHMPGYVVYNILIGSICGDKDSLN 425

Query: 98  ----ELDIQAYSCLIDG---------------LCKSGR---------------------- 116
               +L  +AYS ++                 LC +G+                      
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 117 -------------LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
                        +E+A  LF  + RG LVADV TY+IM+      G +++A   F +M 
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           E    PNV+T+  LIH +++  + S   EL   M  +  +P+    S ++D
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 3/224 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  +C+N     AL     +     +P    +N L     +  +++ A  +  EM   
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLA 264

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T   F   LCK G   E++ L  T   +    D   Y+ LI GLC++   E A
Sbjct: 265 NLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVP---DTVFYTKLISGLCEASLFEEA 321

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +     + +VVTYS ++ G  N  Q+ +   +   M      P+   F +L+H 
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
           +    + S   +LL KM +   MP   + +I++  +  ++ SLN
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CKN  ++ A NL  EM           +  +  G F    +E +  L DE+ +D
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG-FNKEFIE-SLGLLDEIGQD 876

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQA-YSCLIDGLCKSGRLE 118
             A     Y + ID L K   +  ++ L   +      L D  + Y+ LI+ LC + ++E
Sbjct: 877 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVE 936

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
            A +LF  + +  ++ ++ ++  +I GL+ + ++ +A  L LD   + V P
Sbjct: 937 TAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL-LLLDFISHMVCP 986



 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM--LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           +LI+   K + +E AL L  E+   S  +      +N+L   L   ++VE AF+LF EM 
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 946

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           + GV  + +++   I GL +N  I E++ L   +  + C L
Sbjct: 947 KKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVCPL 987


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 115/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK  ++  A +L+ EM +KG++P      +L  G  +  QV++AFKL+++M  +G
Sbjct: 441 LINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNG 500

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  I GLC    + E+ ELF  L   K +     Y+ LI+G C+ G+++ A 
Sbjct: 501 ITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAF 560

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  LV D  TY  +I GL + G++ KA D   D+ +  V  N + +  L+HG+
Sbjct: 561 ELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGY 620

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +     + +    +M ++ +  D    ++++D
Sbjct: 621 CQEGRLMEALSASCEMIQRGINMDLVCHAVLID 653



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK+ +++ A  LY++M+  GI P+V     L  GL   +++  A +LFDE+    
Sbjct: 476 LISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERK 535

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + I+G C++G I ++ EL   +       D   Y  LI GLC +GR+  A 
Sbjct: 536 IKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAK 595

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    L +  +  + + YS ++HG   +G++ +A     +M +  +  +++    LI G 
Sbjct: 596 DFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGA 655

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +     +LL  M ++ + PD  I + ++D  +K
Sbjct: 656 LKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSK 692



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 103/202 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C++  ++ A++ +  M+  GI   V  +N+L  G  +   +  A  LF EM   
Sbjct: 405 ILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNK 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     T+T  I G CK+  + ++ +L+  +       ++  ++ LI GLC + ++  A
Sbjct: 465 GVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEA 524

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L    +    VTY+++I G   DG++DKA +L  DM +  + P+  T+  LI G
Sbjct: 525 SELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISG 584

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
                  SK  + +  + ++NV
Sbjct: 585 LCSTGRVSKAKDFIDDLHKQNV 606



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C+ ++ E  + L  EM+  G  P     + L  GL +  +++ A++L  ++ R G
Sbjct: 301 LVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFG 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   I+ LCK G + ++  L+  + ++    +   YS LID  C+SGRL++A+
Sbjct: 361 FVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAI 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + +  +   V  Y+ +I+G    G +  A  LF++M    V P   TF +LI G+
Sbjct: 421 SYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGY 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEIS 222
            +  +  K  +L +KM +  + P+  +  +++  L + N+++
Sbjct: 481 CKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMA 522



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 110/205 (53%), Gaps = 1/205 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  K  + +   +L  +M  +G++PD VI+ ++     +    ++AF+ +D M  +
Sbjct: 650 VLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTE 709

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TYT  ++GLCK G +  +  LF+ ++      +   Y C +D L K G ++ A
Sbjct: 710 ECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEA 769

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L H++ +G L+A+ VT++I+I G    G+  +A  +  +M EN + P+ +T+ TLI+ 
Sbjct: 770 IGLHHAMLKG-LLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYE 828

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R       ++L   M  + + PD
Sbjct: 829 YCRSGNVGASVKLWDTMLNRGLEPD 853



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK  +++ A  LYS M    ++P+ + ++ L        +++ A   FD M +DG
Sbjct: 371 LINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDG 430

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I+G CK G +  +  LF  +     E     ++ LI G CK  +++ A 
Sbjct: 431 IGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAF 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +    +  +V T++ +I GL +  +M +A +LF ++ E  + P  +T+  LI G+
Sbjct: 491 KLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGY 550

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R  +  K  ELL  M +K ++PD 
Sbjct: 551 CRDGKIDKAFELLEDMHQKGLVPDT 575



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 1/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+   +  AL+   EM+ +GI  D+V H  L  G  +    +  F L  +M   G
Sbjct: 616 LLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQG 675

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  ID   K G   ++ E +  +   +C  ++  Y+ L++GLCK+G ++ A 
Sbjct: 676 LRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAG 735

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  + +TY   +  L  +G M +A  L   M +  +A N +T   +I GF
Sbjct: 736 LLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLA-NTVTHNIIIRGF 794

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++    +  ++L +M E  + PD    S ++
Sbjct: 795 CKLGRFHEATKVLSEMTENGIFPDCVTYSTLI 826



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   ++  A  L+ E++ + IKP  V +N L  G     ++++AF+L ++M + G
Sbjct: 511 LISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKG 570

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   I GLC  G + ++ +    L     +L+   YS L+ G C+ GRL  AL
Sbjct: 571 LVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEAL 630

Query: 122 EL-FHSLPRGV----------------------------------LVADVVTYSIMIHGL 146
                 + RG+                                  L  D V Y+ MI   
Sbjct: 631 SASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTY 690

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G   KA + +  M      PNV+T+  L++G  +  E  +   L  +M+  NV P++
Sbjct: 691 SKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNS 750

Query: 207 SIVSIVVDLLAK 218
                 +D L K
Sbjct: 751 ITYGCFLDNLTK 762



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 105/213 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K  +I+ A  L  ++   G  P++ ++N L   L +   +++A  L+  M    
Sbjct: 336 LVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMN 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+I ID  C++G +  ++  F  +        + AY+ LI+G CK G L  A 
Sbjct: 396 LRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAE 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +     T++ +I G   D Q+ KA  L+  M +N + PNV TF  LI G 
Sbjct: 456 SLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              N+ ++  EL  ++ E+ + P     +++++
Sbjct: 516 CSTNKMAEASELFDELVERKIKPTEVTYNVLIE 548



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 3/205 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ Y K    + A   +  M+++   P+VV +  L  GL +  +++RA  LF  MQ   
Sbjct: 686 MIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAAN 745

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
           V  ++ TY  F+D L K G + E++ L   +  LK  L +   ++ +I G CK GR   A
Sbjct: 746 VPPNSITYGCFLDNLTKEGNMKEAIGLHHAM--LKGLLANTVTHNIIIRGFCKLGRFHEA 803

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +    +  D VTYS +I+     G +  +  L+  M    + P+++ +  LI+G
Sbjct: 804 TKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYG 863

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                E  K  EL   M  + ++PD
Sbjct: 864 CCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 35/236 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  K ++      L+ E ++ G++PD    + +   + E+    RA +    M+ +G
Sbjct: 196 LLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL--------------------RILKCELDI 101
                 TY + I GLCK   + E+VE+ R+L                    R+ + E  I
Sbjct: 256 FDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGI 315

Query: 102 Q---------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           Q               A S L+DGL K G+++ A EL   + R   V ++  Y+ +I+ L
Sbjct: 316 QLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSL 375

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
              G +DKA  L+ +M    + PN IT+  LI  F R       I    +M +  +
Sbjct: 376 CKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGI 431



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y  +  I  A+ +   M +  + P+V   + L  GL ++ +    ++LFDE    
Sbjct: 160 LLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNA 219

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T +  +  +C+    + + E  R +     +L I  Y+ LI GLCK  R+  A
Sbjct: 220 GVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEA 279

Query: 121 LELFHSLPRGVLVADVVTY-----------------------------------SIMIHG 145
           +E+  SL    L ADVVTY                                   S ++ G
Sbjct: 280 VEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDG 339

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++D A++L + +      PN+  +  LI+   +  +  K   L   M   N+ P+
Sbjct: 340 LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPN 399

Query: 206 ASIVSIVVDLLAKN 219
               SI++D   ++
Sbjct: 400 GITYSILIDSFCRS 413



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G+CK      A  + SEM   GI PD V ++TL         V  + KL+D M   
Sbjct: 789 IIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNR 848

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           G+  D   Y + I G C NG + ++ EL
Sbjct: 849 GLEPDLVAYNLLIYGCCVNGELDKAFEL 876



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 42/66 (63%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YC++  +  ++ L+  ML++G++PD+V +N L  G     ++++AF+L D+M R G
Sbjct: 825 LIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRG 884

Query: 62  VAADTR 67
           +  D +
Sbjct: 885 IIPDNK 890


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKNK IE A  ++ EM  +G+  D V +NTL  GL +  +VE A +L D+M  +G
Sbjct: 489 LIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG 548

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +   CK G I ++ ++ +T+    C  DI  Y+ LI GLCK+GR+++A 
Sbjct: 549 LRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVAS 608

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    +V     Y+ +I  L+   +  +A  LF +M + +  P+ IT+  +  G 
Sbjct: 609 RLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGL 668

Query: 182 IRINEP-SKVIELLHKMKEKNVMPDAS 207
                P  + ++   +M E+  +P+ S
Sbjct: 669 CNGGGPIGEAVDFTVEMIERGNIPEFS 695



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 110/220 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+CK   I+ AL+   E +S+G +PD   +NTL  GL +I   + A ++ D M   
Sbjct: 278 VLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLG 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I GLCK G I E+V++   +    C  +   Y+ +I  LCK  R++ A
Sbjct: 338 GLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEA 397

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   L    ++ DV T++ +I GL        A DLF +M+     P+  T+  LI  
Sbjct: 398 TEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDS 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                +  + + LL +M+      +  I + ++D   KN+
Sbjct: 458 LCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNK 497



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C +   + A++L+ EM  KG +PD   +N L   L    ++E A  L  EM+ +G
Sbjct: 419 LIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   Y   IDG CKN  I E+ E+F  + +     D   Y+ LIDGLCKS R+E A 
Sbjct: 479 CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAA 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ ++      G + KA D+   M  +   P+++T+ TLI G 
Sbjct: 539 QLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGL 598

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +         LL  ++ K ++      + V+  L K
Sbjct: 599 CKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFK 635



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C ++++E ALNL  EM   G   +VVI+NTL  G  +  ++E A ++FDEM+  
Sbjct: 453 MLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQ 512

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D+ TY   IDGLCK+  + ++ +L   + +     D   Y+ L+   CK+G ++ A
Sbjct: 513 GVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKA 572

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++  ++       D+VTY+ +I GL   G++  A  L   ++   +      +  +I  
Sbjct: 573 ADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQA 632

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
             + N   + + L  +M +K+  PDA    IV   L      +     FTV 
Sbjct: 633 LFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVE 684



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 115/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK    + A+ +   ML  G+ PD+  +N+L  GL ++ ++E A K+ D+M    
Sbjct: 314 LVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRD 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   I  LCK   + E+ E+ R L       D+  ++ LI GLC S   + A+
Sbjct: 374 CSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAM 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       D  TY+++I  L +  ++++A +L  +ME N  A NV+ + TLI GF
Sbjct: 434 DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGF 493

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +  E+  +M+ + V  D+   + ++D L K++
Sbjct: 494 CKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSK 532



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK   ++ A  +   + SKGI PDV   N+L  GL      + A  LF+EM+  G
Sbjct: 384 IISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKG 443

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ID LC +  + E++ L + + +  C  ++  Y+ LIDG CK+ R+E A 
Sbjct: 444 CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAE 503

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  D VTY+ +I GL    +++ A  L   M    + P+  T+ +L+  F
Sbjct: 504 EIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHF 563

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  +++  M      PD    + ++  L K
Sbjct: 564 CKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCK 600



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  EIE A+ +  +M+S+   P+ V +N +   L + ++V+ A ++   +   G
Sbjct: 349 LISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKG 408

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   I GLC +     +++LF  ++   C  D   Y+ LID LC S +LE AL
Sbjct: 409 ILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEAL 468

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       +VV Y+ +I G   + ++++A ++F +ME   V+ + +T+ TLI G 
Sbjct: 469 NLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGL 528

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +        +L+ +M  + + PD
Sbjct: 529 CKSKRVEDAAQLMDQMIMEGLRPD 552



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ GY +   ++GAL +  +M+  G     V  N L  G  +  ++++A     E   +G
Sbjct: 244 IMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G+   ++E+   + +   + DI  Y+ LI GLCK G +E A+
Sbjct: 304 FRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAV 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +       + VTY+ +I  L  + ++D+A ++   +    + P+V TF +LI G 
Sbjct: 364 KILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGL 423

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              +     ++L  +MK K   PD    ++++D L  +
Sbjct: 424 CLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSS 461



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
           +S M+ + I+ DV   N L   L + HQV  A  + +EM   G++ D  T+T  + G  +
Sbjct: 191 HSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIE 250

Query: 79  NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138
            G +  ++ +   +    C       + LI+G CK GR++ AL             D  T
Sbjct: 251 GGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFT 310

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           Y+ +++GL   G    A ++   M    + P++ T+ +LI G  ++ E  + +++L +M 
Sbjct: 311 YNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMV 370

Query: 199 EKNVMPDASIVSIVVDLLAK 218
            ++  P+A   + ++  L K
Sbjct: 371 SRDCSPNAVTYNAIISSLCK 390


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    I  A+ L  +M+  G KPD V   TL  GLF  ++   A  L D M + G
Sbjct: 154 LLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRG 213

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++GLCK G    ++ L   +   K E ++  YS +ID LCK    + AL
Sbjct: 214 CQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 273

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +V+TYS +I  L N G+   A  L  DM E  + PN++TF  LI  F
Sbjct: 274 NLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAF 333

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++  +  K  +L  +M ++++ P+    S +++
Sbjct: 334 VKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 366



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+   +  AL L  +M+  G +PD+V  N+L  G    +++  A  L D+M   
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM 177

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T+T  I GL  +    E+V L   +    C+ D+  Y  +++GLCK G  ++A
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLA 237

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L + +    + A+VV YS +I  L      D A +LF +ME   V PNVIT+ +LI  
Sbjct: 238 LNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 297

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S    LL  M E+ + P+    S ++D   K
Sbjct: 298 LCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK +  + ALNL++EM +KG++P+V+ +++L   L    +   A +L  +M    
Sbjct: 259 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERK 318

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T++  ID   K G +V++ +L+  +     + +I  YS LI+G C   RL  A 
Sbjct: 319 INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAK 378

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + R   + +VVTY+ +I+G     ++DK  +LF +M +  +  N +T+ TLIHGF
Sbjct: 379 QMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +      +  +M    V P+    +I++D L KN
Sbjct: 439 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 476



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C       A  L S+M+ + I P++V  + L     +  ++ +A KL++EM +  
Sbjct: 294 LISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRS 353

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I+G C    + E+ ++   +    C  ++  Y+ LI+G CK+ R++  +
Sbjct: 354 IDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGM 413

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + +  LV + VTY+ +IHG +     D A  +F  M    V PN++T+  L+ G 
Sbjct: 414 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 473

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + +K + +   ++   + PD    +I+++ + K
Sbjct: 474 CKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 110/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  + + ALNL ++M +  I+ +VVI++T+   L +    + A  LF EM+  G
Sbjct: 224 VVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 283

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  I  LC  G   ++  L   +   K   ++  +S LID   K G+L  A 
Sbjct: 284 VRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAE 343

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + +  +  ++ TYS +I+G     ++ +A  +   M      PNV+T+ TLI+GF
Sbjct: 344 KLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGF 403

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     K +EL  +M ++ ++ +    + ++
Sbjct: 404 CKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 10/156 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C    +  A  +   M+ K   P+VV +NTL  G  +  +V++  +LF EM + G
Sbjct: 364 LINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRG 423

Query: 62  VAADTRTYTIFIDGL-----CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           +  +T TYT  I G      C N  +V     F+ +  +    +I  Y+ L+DGLCK+G+
Sbjct: 424 LVGNTVTYTTLIHGFFQARDCDNAQMV-----FKQMVSVGVHPNILTYNILLDGLCKNGK 478

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
           L  A+ +F  L R  +  D+ TY+IMI G+   G+ 
Sbjct: 479 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 108/225 (48%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           E++ A+ L+  M      P ++  + L   + ++++ +      ++M+  G++ +  TY 
Sbjct: 58  ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYN 117

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I+  C+   +  ++ L   +  L  E DI   + L++G C   R+  A+ L   +   
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM 177

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               D VT++ +IHGL+   +  +A  L   M +    P+++T+G +++G  +  +    
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLA 237

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           + LL+KM+   +  +  I S V+D L K     ++L  FT  E +
Sbjct: 238 LNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 119/254 (46%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK  ++  A  L  EM+  G++PD   +N L  G F+ H  + AF+L +EM+  G
Sbjct: 389 LIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSG 448

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------------FRTLRI---------LKC 97
           +  +  +Y I I+GLC+NG   E+  L               +  L I         L C
Sbjct: 449 ILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLAC 508

Query: 98  EL-----------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           E            D+  Y+ LI GL   GR+E A E +  + +  LV D  TYS +IHG 
Sbjct: 509 EALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGY 568

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G ++KA  L   M  + + PN  T+  L+ G+ + N+  KV  +L  M      PD 
Sbjct: 569 CKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDN 628

Query: 207 SIVSIVVDLLAKNE 220
            I  IV+  L+++E
Sbjct: 629 HIYGIVIRNLSRSE 642



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 34/251 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GY K+ + E   ++   ML  G KPD  I+  +   L     +E AF +  E++++G
Sbjct: 599 LLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNG 658

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+  I GLCK   + ++V L   +     E  I  Y+ LIDG C+SG +  A 
Sbjct: 659 LVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRAR 718

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP------------ 169
            +F S+    LV + VTY+ +I G   +G +  A DL+ +M +  +AP            
Sbjct: 719 NVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGC 778

Query: 170 ----------------------NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
                                 NV  F TL+HGF +  +  +  +LLH M ++ ++P+A 
Sbjct: 779 SDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQ 838

Query: 208 IVSIVVDLLAK 218
            V  VV    K
Sbjct: 839 TVEKVVSEFGK 849



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G C++  +E A     EM+  G+ PD   +  L  GL +  +++ A  L DEM   
Sbjct: 283 VMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCS 342

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   +DG  K G   E+ ++ + +     + +   Y  LI GLCK G+L  A
Sbjct: 343 GLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRA 402

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + +  L  D  TY+ ++ G +     D A +L  +M  + + PNV ++G +I+G
Sbjct: 403 SKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMING 462

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  E  +   LL +M  + + P+A + + ++
Sbjct: 463 LCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 495



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 100/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   ++ A  L  EM   G+KP++V++ TL  G  +  +   AF +  EM   G
Sbjct: 319 LMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG 378

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y   I GLCK G +  + +L + +  +    D   Y+ L+ G  +    + A 
Sbjct: 379 VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAF 438

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    ++ +V +Y IMI+GL  +G+  +A +L  +M    + PN   +  LI G 
Sbjct: 439 ELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGH 498

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +    S   E L KM + NV PD
Sbjct: 499 SKEGNISLACEALEKMTKANVHPD 522



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I  +CK ++ + A  ++ EM  +    + V +N +  GL     VE AF   +EM   G
Sbjct: 249 FIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYG 308

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   ++GLCK   + E+  L   +     + +I  Y  L+DG  K G+   A 
Sbjct: 309 LSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAF 368

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +  + + Y  +I GL   GQ+ +A  L  +M +  + P+  T+  L+ G 
Sbjct: 369 DILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGH 428

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + ++     ELL++M+   ++P+     I+++ L +N
Sbjct: 429 FQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQN 466



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y K   +  A  +   M   G+ P     N L   L     +E  +KL   M+  
Sbjct: 178 VLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGA 237

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY+ FI+  CK      + ++F  +R   C ++   Y+ +I GLC+SG +E A
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 +    L  D  TY  +++GL    ++ +A  L  +M  + + PN++ +GTL+ G
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F++  + ++  ++L +M    V P+
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPN 382



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 9/210 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++E A+ L  EM  +G++P +V +N L  G      + RA  +FD +   G
Sbjct: 669 LISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKG 728

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  IDG CKNG I ++ +L++ +       D   Y+ L  G   +  LE AL
Sbjct: 729 LVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQAL 788

Query: 122 ----ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
               E+F+   RG   A+V  ++ ++HG    G++ +   L   M +  + PN  T   +
Sbjct: 789 FLTEEMFN---RGY--ANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKV 843

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
           +  F +  +  +   +  ++++K     A+
Sbjct: 844 VSEFGKAGKLGEAHRVFAELQQKKASQSAT 873



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING C+N E + A NL  EM+S+G+KP+  ++  L IG  +   +  A +  ++M + 
Sbjct: 458 IMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKA 517

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D   Y   I GL   G + E+ E +  ++      D   YS LI G CK+G LE A
Sbjct: 518 NVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKA 577

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L  +  TY+ ++ G +     +K   +   M  +   P+   +G +I  
Sbjct: 578 DQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRN 637

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R         +L ++++  ++PD  I S ++  L K
Sbjct: 638 LSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCK 675


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 113/209 (54%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  +++GA  L+  M  KG  P    +N L  GL    +   A  +   M+R+GV     
Sbjct: 165 RAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVM 224

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   +DGL + G + ++ ++   +       +   YS +I G CKSG ++ AL+++ ++
Sbjct: 225 TYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAM 284

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  +VV YS MI GL N G+M +A  LF +M ++  APN+IT+G++I G+ +I + 
Sbjct: 285 VASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDT 344

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           S+ + +  +M     MP+A   SI+++ L
Sbjct: 345 SRALSVWEEMIGAGCMPNAVSYSILINGL 373



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+CK+ EI+ AL ++  M++  ++P+VV+++ +  GL    ++  A  LF EM    
Sbjct: 264 VITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSK 323

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TY   I G  K G    ++ ++  +    C  +  +YS LI+GLC  GRL+ A+
Sbjct: 324 CAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAM 383

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-PNVITFGTLIH 179
            ++ H L RG    D + Y+ MI GL   G +D    LF DM  +  A P+VI++  L+ 
Sbjct: 384 MVWKHMLDRGC-APDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLD 442

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G +   +  + ++LL++M ++   PD    +I +      E
Sbjct: 443 GLLLAKDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAGE 483



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 99/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G         A+ +   M  +G+ P V+ +  +  GL    +V+ A+K+ +EM+R+
Sbjct: 193 VLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERN 252

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +   Y+  I G CK+G I  +++++  +       ++  YS +I GL   G++  A
Sbjct: 253 GLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEA 312

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       +++TY  MI G +  G   +A  ++ +M      PN +++  LI+G
Sbjct: 313 ELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILING 372

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
              +      + +   M ++   PD
Sbjct: 373 LCNVGRLKDAMMVWKHMLDRGCAPD 397



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 1/191 (0%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           + PD   ++T+   L +  +V+ A  L  EM  DGV A    +   +  + + G +  + 
Sbjct: 115 LAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVA-AEAFNPVLRAMLRAGDVKGAA 173

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF  +++  C      Y+ L+ GL   GR   A+ +   + R  +V  V+TY  ++ GL
Sbjct: 174 KLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGL 233

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++  A  +  +ME N +A N   + T+I GF +  E    +++   M    V P+ 
Sbjct: 234 VRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNV 293

Query: 207 SIVSIVVDLLA 217
            + S ++  LA
Sbjct: 294 VLYSAMIGGLA 304



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY+  +  L   G + ++V L   + +    +  +A++ ++  + ++G ++ A 
Sbjct: 115 LAPDKFTYSTVVSALADAGRVDDAVALVHEM-VADGVVAAEAFNPVLRAMLRAGDVKGAA 173

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +     V    TY++++HGL   G+   A  +   ME   V P V+T+G ++ G 
Sbjct: 174 KLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGL 233

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R        ++  +M+   +  +  + S V+    K+
Sbjct: 234 VRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKS 271



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C    ++ A+ ++  ML +G  PD + + ++  GL     V+   +LF +M   
Sbjct: 368 ILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLAS 427

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G A  D  +Y + +DGL     +  +++L   +    C+ D
Sbjct: 428 GHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPD 468


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 122/213 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  YCK++ I+   +LY +M+  G+ PDVV  +++  GL    ++  A  L  EM   G
Sbjct: 242 LIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMG 301

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +YT  I  L K+G ++E+      + +    +D+   + ++DGL K+G+ + A 
Sbjct: 302 LDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAE 361

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F ++ +  LV + VTY+ ++ G    G ++ A  +   ME+  V PNV+TF ++I+G+
Sbjct: 362 EMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGY 421

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +    +K +E+L KM + N+MP+  + +I++D
Sbjct: 422 AKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLD 454



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C++ ++  A  L  EM + G+ P+ V + T+   L +  +V  AF    +M   G
Sbjct: 277 ILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRG 336

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D    T  +DGL K G   E+ E+F+T+  L    +   Y+ L+DG CK G +E A 
Sbjct: 337 ISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAE 396

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  ++ +VVT+S +I+G    G ++KA ++   M +  + PNV  +  L+ G+
Sbjct: 397 TVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGY 456

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  +         +MK   +  +  I  I+++ L ++
Sbjct: 457 FRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRS 494



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGY K   +  A+ +  +M+   I P+V ++  L  G F   Q E A   + EM+  G
Sbjct: 417 IINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWG 476

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   + I ++ L ++G + E+  L + +      LD+  YS L+DG  K G    AL
Sbjct: 477 LEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAAL 536

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  DVV Y+ +  GL   G+ +    +F  M E  + P+ +T+ ++++ +
Sbjct: 537 SVVQEMTEKDMQFDVVAYNALTKGLLRLGKYE-PKSVFSRMIELGLTPDCVTYNSVMNTY 595

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +    ++LL++MK   VMP+    +I++  L K
Sbjct: 596 FIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCK 632



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK   IE  +++  EML+ G  P  +IH  L        + +   ++  ++   
Sbjct: 625 ILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDM 684

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   I  LC+ G   ++  +   + I     DI  Y+ LI G C    +E A
Sbjct: 685 GLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKA 744

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              +  +    +  ++ TY+ ++ GL  +G M  A  L  +M E  + PN  T+  L+ G
Sbjct: 745 FNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSG 804

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+      I+L  +M  K  +P     ++++   AK
Sbjct: 805 HGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAK 842



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 1/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++GY +  + E A   Y EM S G++ + +I + L   L     ++ A  L  ++   
Sbjct: 451 ILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSK 510

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y+  +DG  K G    ++ + + +     + D+ AY+ L  GL + G+ E  
Sbjct: 511 GIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYE-P 569

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L  D VTY+ +++  +  G+ + A DL  +M+   V PN++T+  LI G
Sbjct: 570 KSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGG 629

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             +     KVI +LH+M     +P
Sbjct: 630 LCKTGAIEKVISVLHEMLAVGYVP 653



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 104/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  Y ++++ +  L ++ +++  G+  + +++NTL   L  +   ++A  +  EM   G
Sbjct: 661 LLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKG 720

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++AD  TY   I G C   ++ ++   +  + +     +I  Y+ L++GL  +G +  A 
Sbjct: 721 ISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDAD 780

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    LV +  TY+I++ G    G    +  L+ +M      P   T+  LI  +
Sbjct: 781 KLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDY 840

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +  +  ELL++M  +  +P++S   +++
Sbjct: 841 AKAGKMRQARELLNEMLTRGRIPNSSTYDVLI 872



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 12/218 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+    + A  + +EM+ KGI  D+V +N L  G      VE+AF  + +M   G
Sbjct: 696 LITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSG 755

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY   ++GL  NG + ++ +L   +R      +   Y+ L+ G  + G    ++
Sbjct: 756 ISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSI 815

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +     +    TY+++I      G+M +A +L  +M      PN  T+  LI G+
Sbjct: 816 KLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGW 875

Query: 182 IRIN-EP-----------SKVIELLHKMKEKNVMPDAS 207
            +++ +P           ++  +LL +M EK  +P  S
Sbjct: 876 CKLSCQPEMDRLLKLSYQNEAKKLLREMCEKGHVPSES 913



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K+KE E    ++  +L   + P+ V +  L  G  ++  VE A  +  +M+++ V  +  
Sbjct: 356 KSKEAE---EMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVV 412

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T++  I+G  K G + ++VE+ R +  +    ++  Y+ L+DG  ++G+ E A   +  +
Sbjct: 413 TFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEM 472

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L  + + + I+++ L   G M +A  L  D+    +  +V  + +L+ G+ +    
Sbjct: 473 KSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNE 532

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           S  + ++ +M EK++  D     +  + L K  + L      +V  R  E+
Sbjct: 533 SAALSVVQEMTEKDMQFDV----VAYNALTKGLLRLGKYEPKSVFSRMIEL 579



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 25/241 (10%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ GYC+   ++ A  +   ++  G+  D +  NTL  G  E+  V RA  L ++  ++
Sbjct: 115 ILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKN 174

Query: 61  GVAADTRTYTIFIDGLCKNGYIVES-----------------------VELFRTLRILKC 97
           GV  D  TY   ++  CK G + ++                       VE +  LR L  
Sbjct: 175 GVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDL-- 232

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
           +  +  ++ LI   CK   ++    L+  +    ++ DVVT S +++GL   G++ +A  
Sbjct: 233 QPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAM 292

Query: 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           L  +M    + PN +++ T+I   ++     +      +M  + +  D  + + ++D L 
Sbjct: 293 LLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLF 352

Query: 218 K 218
           K
Sbjct: 353 K 353



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+CK    +    L SEM+ KG+  D V  N L  G  +I  V+ A  +   +   G
Sbjct: 81  VVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLVGGG 140

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D       +DG C+ G +  +++L         + DI  Y+ L++  CK G L  A 
Sbjct: 141 VPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAE 200

Query: 122 ELFHSL-------PRGV--------------LVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
            + + +         GV              L   VVT++ +I        +D    L+ 
Sbjct: 201 SVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYE 260

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKN 219
            M  + V P+V+T  ++++G  R  + ++   LL +M    + P+  S  +I+  LL   
Sbjct: 261 QMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSG 320

Query: 220 EI 221
            +
Sbjct: 321 RV 322



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 51/247 (20%)

Query: 18  LYSEMLSKGIKPDV------------------------------VIHNTLFIGLFEIHQV 47
           LYSEM+  G+ P+V                              V +NT+  G  +    
Sbjct: 32  LYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYLRNSVFDHVTYNTVVWGFCKRGLA 91

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
           ++ F L  EM + GV  D+ T  I + G C+ G +  +  +   L      LD    + L
Sbjct: 92  DQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTL 151

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL------FLD 161
           +DG C+ G +  AL+L     +  +  D+VTY+ +++     G + KA  +      F  
Sbjct: 152 VDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRR 211

Query: 162 MEENAV---------------APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            +E+ V                P V+T+ TLI  + +         L  +M    VMPD 
Sbjct: 212 DDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDV 271

Query: 207 SIVSIVV 213
              S ++
Sbjct: 272 VTCSSIL 278



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 46/258 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY K      AL++  EM  K ++ DVV +N L  GL  + + E    +F  M   G
Sbjct: 522 LMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPK-SVFSRMIELG 580

Query: 62  VAADTRTY-----TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           +  D  TY     T FI G  +N     +++L   ++      ++  Y+ LI GLCK+G 
Sbjct: 581 LTPDCVTYNSVMNTYFIQGKTEN-----ALDLLNEMKSYGVMPNMVTYNILIGGLCKTGA 635

Query: 117 LEIALELFHSL------PRGVL------------VADVV-----------------TYSI 141
           +E  + + H +      P  ++             AD +                  Y+ 
Sbjct: 636 IEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNT 695

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I  L   G   KA+ +  +M    ++ +++T+  LI G+   +   K      +M    
Sbjct: 696 LITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSG 755

Query: 202 VMPDASIVSIVVDLLAKN 219
           + P+ +  + +++ L+ N
Sbjct: 756 ISPNITTYNALLEGLSTN 773



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 17/221 (7%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P + + N L         V +   L+ EM   GV  +  +  + +  LCK G +  ++  
Sbjct: 8   PSLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGY 67

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
            R         D   Y+ ++ G CK G  +    L   + +  +  D VT +I++ G   
Sbjct: 68  LRN-----SVFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQ 122

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G +  A  +  ++    V  + I   TL+ G+  +   S+ ++L+    +  V PD   
Sbjct: 123 IGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVT 182

Query: 209 VSIVVDL------LAKNEISLNSLPSFTVHERQEEVDESNV 243
            + +V+       LAK E  +N +  F    R++  DES V
Sbjct: 183 YNTLVNAFCKRGDLAKAESVVNEILGF----RRD--DESGV 217



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+ +      ++ LY EM++KG  P    +N L     +  ++ +A +L +EM   
Sbjct: 800 ILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTR 859

Query: 61  GVAADTRTYTIFIDGLCK 78
           G   ++ TY + I G CK
Sbjct: 860 GRIPNSSTYDVLICGWCK 877


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 115/222 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +C  KE++ A     +M  KG+ P V  +NTL  G  ++   +R F++ ++M+  G
Sbjct: 427 LIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIG 486

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   I+ LCK+G I+E+  + R +       + Q Y+ LIDG C  G+++ AL
Sbjct: 487 VKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDAL 546

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + R  +   +VTY+++I GL   G++ +A D    +  +  +P+VIT+ +LI G+
Sbjct: 547 RFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGY 606

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
                 SK + L   MK   + P       ++   +K  I L
Sbjct: 607 ANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIEL 648



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 116/253 (45%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C+ K I  A  ++ EM +  +   +V +NTL  G  ++ +++ AFK+ + M+  
Sbjct: 216 VLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEK 275

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-----------------LKC------ 97
            VA +  T+   + GLCK   + E+  L + + +                 L+C      
Sbjct: 276 SVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGA 335

Query: 98  -ELDIQAY-----------SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            EL  QA            S L++GLCK G++E A E+        LVAD V Y+  ++G
Sbjct: 336 MELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNG 395

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G M+KA      ME   + PN ITF +LI  F  + E  K  E + KM EK V P 
Sbjct: 396 YCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPS 455

Query: 206 ASIVSIVVDLLAK 218
               + ++D   K
Sbjct: 456 VETYNTLIDGYGK 468



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 1/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C   +++ AL  + EM+   I P +V +N L  GL +  ++  A     ++   
Sbjct: 531 MLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSS 590

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY   I G    G + + + L+ T++ L  +  ++ Y  LI G  K G +E+ 
Sbjct: 591 GHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELV 649

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L++ + +  L+ D V Y+ MIH     G   KA+ L   M +  + P+ +T+ +LI G
Sbjct: 650 EKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILG 709

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             R  + S + +L++ MK K + P A    I+V
Sbjct: 710 HFREGKLSNIKDLVNNMKAKELAPKADTYDILV 742



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK ++++ A +L  EM   G  PD   ++ LF GL        A +L+++    G
Sbjct: 287 LLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKG 346

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T +I ++GLCK G + ++ E+ +         D   Y+  ++G C+ G +  A+
Sbjct: 347 IRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAI 406

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  + +T++ +I    +  +MDKA +    M E  V P+V T+ TLI G+
Sbjct: 407 LTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGY 466

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  ++L +M+E  V P+      +++ L K+
Sbjct: 467 GKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKD 504



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  CK+K +  A+ LY  M   G  P +V  + LF  L    Q  +   LF E++  
Sbjct: 111 MLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENS 170

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT  Y   I    K   +   +E   ++R      ++  Y+ LI GLC+  R+  A
Sbjct: 171 GFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDA 230

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    LV  +VTY+ +I G    G++D A  +   M+E +VAPN+ITF +L+ G
Sbjct: 231 EKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSG 290

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +  +   LL +M+    MPD    SI+ D L +
Sbjct: 291 LCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLR 328



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 103/209 (49%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           K+    ++L+ E+ + G + D  ++        ++  ++   +  D M++ GV  +   Y
Sbjct: 155 KQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIY 214

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
            + I GLC+   I ++ ++F  +  +     I  Y+ LIDG CK G L+ A ++   +  
Sbjct: 215 NVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKE 274

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             +  +++T++ ++ GL    +M +A  L  +ME N   P+  T+  L  G +R ++ + 
Sbjct: 275 KSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNG 334

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +EL  +  EK +  +    SI+++ L K
Sbjct: 335 AMELYEQATEKGIRINNYTGSILLNGLCK 363



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 71/279 (25%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK+ +I  A  +  +M+ +G+ P+  ++N L  G   + +V+ A + FDEM R  
Sbjct: 497 LINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSE 556

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE---------------------------------- 87
           ++    TY + IDGLCK G + E+ +                                  
Sbjct: 557 ISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCL 616

Query: 88  -LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L+ T++ L  +  ++ Y  LI G  K G +E+  +L++ + +  L+ D V Y+ MIH  
Sbjct: 617 GLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCY 675

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK-------- 198
              G   KA+ L   M +  + P+ +T+ +LI G  R  + S + +L++ MK        
Sbjct: 676 AEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKA 735

Query: 199 ---------------------------EKNVMPDASIVS 210
                                      E N +P+ASI +
Sbjct: 736 DTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICN 774



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL +G  +  +  GA+ LY +   KGI+ +    + L  GL +  +VE+A ++  +   +
Sbjct: 321 ILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTEN 380

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ AD   Y  F++G C+ G + +++     +       +   ++ LID  C    ++ A
Sbjct: 381 GLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKA 440

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    +    +   V TY+ +I G       D+   +   MEE  V PNV+++G+LI+ 
Sbjct: 441 EEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINC 500

Query: 181 FIRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVD 214
             +     K++E   +L  M  + V+P+A + ++++D
Sbjct: 501 LCK---DGKILEAEIVLRDMICRGVLPNAQVYNMLID 534



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I    K + ++  +     M  +G++P+V I+N L  GL    ++  A K+FDEM    +
Sbjct: 183 IQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINL 242

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
                TY   IDG CK G +  + ++   ++      +I  ++ L+ GLCK  +++ A  
Sbjct: 243 VGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARS 302

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L   +     + D  TYSI+  GL      + A +L+    E  +  N  T   L++G  
Sbjct: 303 LLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLC 362

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +  +  K  E+L K  E  ++ D  I +  V+
Sbjct: 363 KQGKVEKAEEILKKFTENGLVADEVIYNTFVN 394



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 1/161 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C  + IE    LY+EML   + PD V++N +     EI   ++A+ L   M   G
Sbjct: 637 LISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQG 695

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G  + G +    +L   ++  +       Y  L+ G C       A 
Sbjct: 696 IHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAY 755

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             +  +     + +    + +  GL  +G++ +   +  +M
Sbjct: 756 VWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEM 796



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 61/132 (46%)

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF         L I     L+   CKS  L  A+EL+  + R   +  +V+ S++   L
Sbjct: 92  DLFSCFSACSIPLRITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCL 151

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N+ Q  K  DLF+++E +    +   +   I   +++      +E L  M+++ V P+ 
Sbjct: 152 VNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNV 211

Query: 207 SIVSIVVDLLAK 218
            I ++++  L +
Sbjct: 212 FIYNVLIGGLCR 223


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 39/230 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+ K +E A +L   M + G+K DVV +NTL  GL +  +++ A +L + M+  G
Sbjct: 158 LISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-------------IL------------- 95
            A D   Y+ F+ GLCK+G ++ + ++   +R             IL             
Sbjct: 218 CAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTAL 277

Query: 96  ----------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                      C L++  YS ++DGLCK GR + A  +  ++ R     DVVTYS +++G
Sbjct: 278 EMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNG 337

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIE 192
           L   G++++A +   +M      PN +T+ +L+HG     R+ E  +++E
Sbjct: 338 LCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVE 387



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 6/230 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
            + G CK+ ++  A  +  +M      P+VV +NT+  GL +  +++ A ++ ++M   D
Sbjct: 228 FVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSD 287

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y+  +DGLCK G   E+  +   +    C  D+  YS L++GLCK+G++E A
Sbjct: 288 GCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEA 347

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-----EENAVAPNVITFG 175
           +E    +       + VTY  ++HGL + G++ +A  +  +M       +   P+V T+ 
Sbjct: 348 VEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYN 407

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            LI G  +       ++   +M+ +   PD    S +V+ LA++  +L +
Sbjct: 408 ALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK  ++E +  L  E++S+G++PD +++  +   L +  ++  A +L +EM R G
Sbjct: 88  LLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAG 147

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   I G C+   +  +  L +T+     + D+  Y+ L+DGLCK+GRL+ A 
Sbjct: 148 CCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAE 207

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       DVV YS  ++GL   G++  AH +   M ++   PNV+T+ T++ G 
Sbjct: 208 QLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGL 267

Query: 182 IRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAK 218
            +  +    +E++ +M   +    +    S VVD L K
Sbjct: 268 CKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCK 305



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIK--PDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           L+ G CK +    A  L  +M+S+G +  PD+V ++TL  G  +  +VE + +L  E+  
Sbjct: 51  LLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVIS 110

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT  +  LCK+  + E++EL   +    C   +  ++ LI G C+   LE+
Sbjct: 111 RGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEM 170

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L  ++    + ADVVTY+ ++ GL   G++ +A  L   M+ +  AP+V+ + + ++
Sbjct: 171 ADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVY 230

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  +  +     ++L +M++ +  P+    + ++D L K+
Sbjct: 231 GLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKS 270



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 2/226 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           L+NG+ K         L   M ++GI+P+VV +N L  GL ++ +   A +L  +M  R 
Sbjct: 16  LVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRG 75

Query: 61  GVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G +  D  TY+  + G CK G + ES EL + +       D   Y+ ++  LCKS RL  
Sbjct: 76  GRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGE 135

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALEL   + R      ++T++ +I G   +  ++ A  L   M  + V  +V+T+ TL+ 
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMD 195

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           G  +     +  +LL +MK     PD    S  V  L K+   LN+
Sbjct: 196 GLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNA 241



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 2/195 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  P+ V  N L  G  +  +     +L + M   G+  +  +Y   ++GLCK     E+
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 86  VELFRTL--RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
            EL R +  R  +   D+  YS L+ G CK+G++E + EL   +    L  D + Y+ ++
Sbjct: 65  EELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVM 124

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L    ++ +A +L  +M      P +ITF TLI G  R         LL  M    V 
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVK 184

Query: 204 PDASIVSIVVDLLAK 218
            D    + ++D L K
Sbjct: 185 ADVVTYNTLMDGLCK 199


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   E   AL L++E L KGIKP+V+++NTL  GL     +  A +L +EM   G
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + +T+ I ++GLCK G + ++  L + +       DI  ++ LI G     ++E AL
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  DV TY+ +++GL    + +   + +  M E   APN+ TF  L+   
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  +  + + LL +MK K+V PDA     ++D   KN
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK   +  A  L   M+SKG  PD+   N L  G     ++E A ++ D M  +
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   ++GLCK     + +E ++T+    C  ++  ++ L++ LC+  +L+ A
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
           L L   +    +  D VT+  +I G   +G +D A+ LF  MEE   V+ +  T+  +IH
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIH 610

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F      +   +L  +M ++ + PD     ++VD   K
Sbjct: 611 AFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I G C+  E++GA+ +   ++ +G KPDV+ +N L  GL +  + + A     +M  +
Sbjct: 256 LFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE 315

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+ TY   I G CK G +  +  +           D   Y  LIDGLC  G    A
Sbjct: 316 GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRA 375

Query: 121 LELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF+ +L +G+   +V+ Y+ +I GL N G + +A  L  +M E  + P V TF  L++
Sbjct: 376 LALFNEALGKGI-KPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVN 434

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G  ++   S    L+  M  K   PD    +I++
Sbjct: 435 GLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK  + E  +  Y  M+ KG  P++   N L   L    +++ A  L +EM+   
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
           V  D  T+   IDG CKNG +  +  LFR +    K       Y+ +I    +   + +A
Sbjct: 562 VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMA 621

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    L  D  TY +M+ G    G ++  +   L+M EN   P++ T G +I+ 
Sbjct: 622 EKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINC 681

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
               +   +   ++H+M +K ++P+A  V+ + D + K E++   L
Sbjct: 682 LCVEDRVYEAAGIIHRMVQKGLVPEA--VNTICD-VDKKEVAAPKL 724



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CKN + + A     +M+++G++PD   +NTL  G  +   V+ A ++  +   +G
Sbjct: 292 LIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNG 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   IDGLC  G    ++ LF        + ++  Y+ LI GL   G +  A 
Sbjct: 352 FVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    L+ +V T++I+++GL   G +  A  L   M      P++ TF  LIHG+
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +    +E+L  M +  V PD    + +++ L K
Sbjct: 472 STQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCK 508



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 48/254 (18%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           Y +N + EG   L+ +ML+ G+   +   N L   L +   V+   KL D++ + GV  +
Sbjct: 192 YEENFKAEG-YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPN 250

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKC---------------------------- 97
             TY +FI GLC+ G      EL   +R++ C                            
Sbjct: 251 LFTYNLFIQGLCQRG------ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304

Query: 98  -------------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
                        E D   Y+ LI G CK G +++A  +         V D  TY  +I 
Sbjct: 305 AEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLID 364

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL ++G+ ++A  LF +     + PNVI + TLI G        +  +L ++M EK ++P
Sbjct: 365 GLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP 424

Query: 205 DASIVSIVVDLLAK 218
           +    +I+V+ L K
Sbjct: 425 EVQTFNILVNGLCK 438



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  +CK      AL L + M S+G + +VV + T+  G +E +     ++LF +M   
Sbjct: 151 IRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLAS 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+    T+   +  LCK G + E  +L   +       ++  Y+  I GLC+ G L+ A
Sbjct: 211 GVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   L       DV+TY+ +I+GL  + +  +A      M    + P+  T+ TLI G
Sbjct: 271 VRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAG 330

Query: 181 FIR 183
           + +
Sbjct: 331 YCK 333



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 2/200 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  +Y  M  +GI PDV           +  +   A +L + M   G   +   Y   + 
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLV 133
           G  +  +  E  ELF  +      L +  ++ L+  LCK G ++   +L    + RGVL 
Sbjct: 190 GFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVL- 248

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            ++ TY++ I GL   G++D A  +   + E    P+VIT+  LI+G  + ++  +    
Sbjct: 249 PNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY 308

Query: 194 LHKMKEKNVMPDASIVSIVV 213
           L KM  + + PD+   + ++
Sbjct: 309 LGKMVNEGLEPDSYTYNTLI 328


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY KN  +E AL LY EM  K +K   +  N +  GLF+  ++  A +L+ +M   G
Sbjct: 559 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   + GLC+N  + E++ +F  LR  + ELD+  ++ +I+ L K GR++ A 
Sbjct: 619 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAK 678

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF ++     V  V+TYS+MI     +G ++++ DLFL ME+N  A +      +I   
Sbjct: 679 SLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRL 738

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +   +  +    L K+ EKN   +AS  ++++ ++++ +
Sbjct: 739 LEKGDVRRAGTYLTKIDEKNFSVEASTAALLIPIVSEKK 777



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I GYC   ++E A+ L  +M   G++PDVV +  L     +I +   A  +FD M R 
Sbjct: 278 IMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRK 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++  Y I + G    G +++  +L   +       + +A++ LI    K G ++ A
Sbjct: 338 GQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKA 397

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  F  + +  L  DVV+YS +IH L   G+++ A   F  M    ++PN+I+F +LIHG
Sbjct: 398 MTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHG 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              I E  KV EL  +M  + + PDA  ++ ++D L K
Sbjct: 458 LCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCK 495



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   E +    L  EM+++GI PD +  NT+   L +  +V  A   FD +   G
Sbjct: 454 LIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIG 513

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   IDG C  G + ES++ F  +  +    D   Y+ L++G  K+GR+E AL
Sbjct: 514 VKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDAL 573

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  +    +T +I++HGL+  G++  A +L++ M +      + T+ T++ G 
Sbjct: 574 ALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGL 633

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +   + + +   ++ K    D    +IV++ L K
Sbjct: 634 CENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLK 670



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 3/232 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI G C  K+ + AL L   M + G     P+VV ++T+  G F+  +V++A+ LFDEM 
Sbjct: 171 LIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMI 230

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G   D  TY+  IDGLCK   + ++  + + +       + + Y+ +I G C  G+LE
Sbjct: 231 GQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLE 290

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ L   +    L  DVVTY ++I      G+  +A  +F  M      PN   +  L+
Sbjct: 291 EAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 350

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           HG+        V +LL  M    +  +    +I++   AK+     ++ +FT
Sbjct: 351 HGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFT 402



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 111/223 (49%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK   +E A+  +++M+S+G+ P+++   +L  GL  I + ++  +L  EM   G+  D 
Sbjct: 424 CKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA 483

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
                 +D LCK G +VE+ + F  +  +  + ++ +Y+ LIDG C  G+++ +++ F  
Sbjct: 484 IFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDR 543

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  D  TY+ +++G + +G+++ A  L+ +M    V    IT   ++HG  +   
Sbjct: 544 MVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGR 603

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
                EL  KM ++         + V+  L +N     +L  F
Sbjct: 604 IVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMF 646



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  YCK      A +++  M+ KG KP+  I++ L  G      +     L D M RD
Sbjct: 313 LLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRD 372

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  + R + I I    K+G + +++  F  +R      D+ +YS +I  LCK GR+E A
Sbjct: 373 GIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDA 432

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL---------------------- 158
           +  F+ +    L  ++++++ +IHGL + G+  K  +L                      
Sbjct: 433 VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDN 492

Query: 159 ------------FLDMEEN-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                       F DM  +  V PNV+++ TLI G+  + +  + I+   +M    + PD
Sbjct: 493 LCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPD 552

Query: 206 ASIVSIVVDLLAKN 219
           +   + +++   KN
Sbjct: 553 SWTYNALLNGYFKN 566



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 4/209 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI  +C    ++ A   ++  L  G +   V  N L  GL +  + + A  + F  M  
Sbjct: 99  ILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPE 158

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI---LKCELDIQAYSCLIDGLCKSGR 116
            G   D  +Y   I GLC      E++EL   +       C  ++ +YS +IDG  K G 
Sbjct: 159 LGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGE 218

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A  LF  +       DVVTYS +I GL     M+KA  +   M +  V PN  T+  
Sbjct: 219 VDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNI 278

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +I G+  + +  + + LL KM    + PD
Sbjct: 279 MIRGYCSLGQLEEAVRLLKKMSGSGLQPD 307


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 114/205 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G      ++  F L   M   
Sbjct: 128 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLAS 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 188 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI+G
Sbjct: 248 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLING 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     E   +M ++N+  D
Sbjct: 308 CCKEGDLDSAFEHRKRMIQENIRLD 332



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 164 LMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I+G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 284 HLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGX 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        ++L +M    + PDA   +++++   K
Sbjct: 344 CQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 380



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 98/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 234 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I+G CK G +  + E  + +      LD  AY+ LI G C+ GR   A 
Sbjct: 294 LKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAE 353

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G +     L  +M+ +   P+V+T+  L++G
Sbjct: 354 KMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 198 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++  L   + +   + D   Y+ LI+G CK G L+ A
Sbjct: 258 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSA 317

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I G   +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 318 FEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINE 377

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +     +LL +M+    +P     +++++
Sbjct: 378 FCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMN 411



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L   +    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 158 VVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 218 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 114 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGD 173

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 174 LDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 233

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 234 LIDGHCKN 241



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 73/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 51  SDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 110

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +   L   M    V PD    S++++ L K
Sbjct: 171 XGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCK 205


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 16/234 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI+ Y K K++  A +++  M+  G +P+ V +  L  GL +   + +AF+++ ++    
Sbjct: 533 LIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTS 592

Query: 58  ------------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
                        R  +A +  TY   +DGLCK   +  + EL   +    CE +   Y 
Sbjct: 593 DSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYD 652

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK+G+++ A E+F  + +   +  V TY+ +I  ++ DG++D A  +   M ++
Sbjct: 653 ALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD 712

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  PNV+T+  +I G  RI E  K ++LL  M+EK   P+    + ++D L ++
Sbjct: 713 SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQS 766



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  L  EM+ KG  PD   ++ +   L    +VE+AF LF EM+  GV  D 
Sbjct: 433 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 492

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++  LF  +R + C   +  Y+ LI    K+ ++  A ++FH 
Sbjct: 493 YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 552

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + VTY  ++ GL   G + KA +++  +                + + +APN
Sbjct: 553 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPN 612

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L+ G  + ++     ELL  M      P+  +   ++D   K
Sbjct: 613 VVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCK 660



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG--------------------- 40
           L++ YC  K+   A  L + M + G  P  V++N +FIG                     
Sbjct: 352 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN-IFIGSICGQEKLPSPDLLDLAEKIY 410

Query: 41  ---------------------LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
                                L  + + ++AF+L  EM R G   DT TY+  I  LC  
Sbjct: 411 GEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHA 470

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
             + ++  LF+ ++++    D+  Y+ LID  CK+G +E A  LF  +        VVTY
Sbjct: 471 TKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTY 530

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           + +IH      Q+ +A+D+F  M +    PN +T+G L+ G  +    SK  E+  K+
Sbjct: 531 TALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 588



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 7/228 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C+      AL     +   G +P  V +N L   L    QV+  F++  EM   
Sbjct: 179 VLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSES 238

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T   F   LCK G   +++++         +LD    + +I GL ++   + A
Sbjct: 239 GFCMDRFTVGCFAHALCKEGRWADALDMIEREDF---KLDTVLCTHMISGLMEASYFDEA 295

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +   H +     + +VVTY  ++ G     Q+     +   M      PN   F +L+H 
Sbjct: 296 MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHS 355

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
           +    + +   +LL++M      P   + +I +  +   E     LPS
Sbjct: 356 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE----KLPS 399


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  +++ A   Y EML +GI P+VV ++++   L +   +++A ++   M ++G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTY   + G C +G   E++   + +     E D+  Y+ L+D LCK+GR   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  ++ TY  ++ G    G + + H L   M  N + PN   F  LI  +
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM+++ + PD      V+ +L K+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C    ++        ++ KG + D +    L  GL    +   A  +    M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  +Y I + GLC      E++EL + +      C  D+ +Y+ +I+G  K G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 118 EIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           + A   +H  L RG+L  +VVTYS +I  L     MDKA ++   M +N V PN  T+ +
Sbjct: 216 DKAYGTYHEMLDRGIL-PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++HG+    +P + I  L KM    V PD    + ++D L KN
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ + + M+  G+ P+   +N++  G     Q + A     +M  DG
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +D LCKNG   E+ ++F ++     + +I  Y  L+ G    G L    
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  +  +   +SI+I      G++D+A  +F  M +  + P+ +T+GT+I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +       +    +M ++ + P
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSP 442



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CKN     A  ++  M  +G+KP++  + TL  G      +     L D M R+G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   ++I I    K G + +++ +F  +R      D   Y  +I  LCKSGR+E A+
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
             F  +    L    + Y+ +IH L    + DKA D FL
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFL 468



 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  Y K  +++ A+ ++S+M  +G+ PD V + T+   L +  +VE A + F++M  +
Sbjct: 379 ILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDE 438

Query: 61  GVAADTRTYTIFIDGLC 77
            ++     Y   I  LC
Sbjct: 439 RLSPGNIVYNSLIHSLC 455


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 35/250 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ +  E++ AL+++  M   G  P V   N L +GL E  Q+E+A ++ DEM   G
Sbjct: 592 IIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAG 651

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TYT  + G    G   ++ E F  LR    +LD+  Y  L+   CKSGR++ AL
Sbjct: 652 VSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSAL 711

Query: 122 -----------------------------------ELFHSLPRGVLVADVVTYSIMIHGL 146
                                              +L   + +G +  D+ TY+  I+  
Sbjct: 712 AVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINAC 771

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M +A  +  +ME + V PNV T+ TLIHG+ R + P K +    +MK   + PD 
Sbjct: 772 CKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDK 831

Query: 207 SIVSIVVDLL 216
           ++   ++  L
Sbjct: 832 AVYHCLMTAL 841



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K K+   A  ++ +++  G+KPDVV++N +      +  ++RA  +  EMQ++
Sbjct: 521 MLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKE 580

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                +RT+   I G  + G +  ++++F  +R   C   +  ++ LI GL +  ++E A
Sbjct: 581 RHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKA 640

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  +  TY+ ++HG    G   KA + F  + +  +  +V T+  L+  
Sbjct: 641 IEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKA 700

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       + +  +M  +N+  +  + +I++D  A+
Sbjct: 701 CCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWAR 738



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  +I  AL +   M S GIK ++  ++ L  G  ++     AF +F+++ +DG
Sbjct: 487 LINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDG 546

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I   C  G +  ++ + + ++  +     + +  +I G  ++G ++ AL
Sbjct: 547 LKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 606

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + R   +  V T++ +I GL    QM+KA ++  +M    V+PN  T+ T++HG+
Sbjct: 607 DVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGY 666

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             + +  K  E   K++++ +  D
Sbjct: 667 AALGDTGKAFEYFTKLRDEGLQLD 690



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  YC+   ++ A  L  EM  +GI   + I++T+  G   +   E+   +F+ ++  G
Sbjct: 417 MIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECG 476

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A    +Y   I+   K G I +++E+ + +     + +++ YS LI+G  K      A 
Sbjct: 477 FAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAF 536

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L  DVV Y+ +I      G MD+A  +  +M++    P   TF  +IHGF
Sbjct: 537 AIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGF 596

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            R  E  + +++   M+    +P   +  ++++ L+ K ++
Sbjct: 597 ARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQM 637



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 9/213 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK+  ++ AL +  EM ++ I  +  ++N L  G      V  A  L  +M++ G
Sbjct: 697 LLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGG 756

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TYT FI+  CK G ++ + ++   +     + +++ Y+ LI G  ++   E AL
Sbjct: 757 VKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKAL 816

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH------DLFLDMEENAVAPNVITFG 175
             F  +    L  D   Y  ++  L +   + +A+       +  +M E+ +   ++  G
Sbjct: 817 RCFQEMKLAGLKPDKAVYHCLMTALLSRATVTEAYVRPGILSICKEMIESGL---IVDMG 873

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           T +H    + +  +    L +  +K   PD ++
Sbjct: 874 TAVHWSKSLRKIERTGGELTEALQKTFPPDWNM 906



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 104/229 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++ Y +  ++  A   +  M ++GI+P   ++ +L         +E A     +M+ +
Sbjct: 311 LMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEE 370

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY+I + G  K G    +   F+  +     ++   Y  +I   C++  ++ A
Sbjct: 371 GVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQA 430

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    + A +  Y  M+ G    G  +K   +F  ++E   AP+V+++G LI+ 
Sbjct: 431 EALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINL 490

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           + ++ + SK +E+   M+   +  +    S++++   K +   N+   F
Sbjct: 491 YAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIF 539



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y   +++E AL+   +M  +G++  +V ++ +  G  +I   + A + F E +   
Sbjct: 347 LIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRH 406

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   I   C+   + ++  L R +     +  I  Y  ++DG    G  E  L
Sbjct: 407 SHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCL 466

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L        VV+Y  +I+     G++ KA ++   ME   +  N+ T+  LI+GF
Sbjct: 467 TVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGF 526

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +++ + +    +   + +  + PD
Sbjct: 527 LKLKDWANAFAIFEDVVKDGLKPD 550



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 57/111 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ +  ++  A +L  +M   G+KPD+  + +      +   + RA K+ +EM+  
Sbjct: 731 ILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETS 790

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           GV  + +TYT  I G  +     +++  F+ +++   + D   Y CL+  L
Sbjct: 791 GVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTAL 841



 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 33/80 (41%)

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           Y +M+      G M +A   F  M    + P    + +LIH +    +  + +    KMK
Sbjct: 309 YGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMK 368

Query: 199 EKNVMPDASIVSIVVDLLAK 218
           E+ V       SI+V   AK
Sbjct: 369 EEGVEMSLVTYSIIVGGFAK 388


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK  +++ A + + +M+  G  PD V +  L   LF+  + E+  ++F+EM   
Sbjct: 54  VVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSK 113

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY   ++G CK G I +++ L R L+          YS LIDGLCK  R E A
Sbjct: 114 GHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEA 173

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF        V DV+ Y+  I GL   G++D+A  + + M E   AP+ +++  +I+ 
Sbjct: 174 RELFEMAAGD--VQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS 231

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + N  S+  EL+ +  E+  MP   + +++VD L K+ 
Sbjct: 232 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSR 271



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 1/202 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G CK  +++ A  ++ +M+  G  PD V +N +   L + ++V  A +L D+     
Sbjct: 193 FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERK 252

Query: 62  VAADTRTYTIFIDGLCKNGYIVES-VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                   T+ +DGLCK+  + E+ V L R L        +  YS +IDGLCK+ RL+ A
Sbjct: 253 CMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDA 312

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + R   V DVVTY+ +I      G++D+A +LF  M E   A +V+ +  LI G
Sbjct: 313 YIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRG 372

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
           + R  +  + I ++ +M  + +
Sbjct: 373 YCRAAKVDEAIAMIEEMAGRGI 394



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 3/213 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+   E A  L+   ++ G   DV+++ +   GL +  +++ A  +  +M   G
Sbjct: 160 LIDGLCKHDRHEEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  +Y + I  LCK+  + E+ EL       KC   +   + L+DGLCKS R+E A 
Sbjct: 218 CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEAC 277

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    L  G     VVTYS +I GL    ++D A+ +   M      P+V+T+  +I  
Sbjct: 278 VILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDA 337

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F ++    +  EL  +M E+    D    +I++
Sbjct: 338 FCKVGRLDEARELFQRMHERGCASDVVAYNILI 370



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGYCK   I+ AL+L   +   G  P   +++TL  GL +  + E A +LF+    D 
Sbjct: 125 VVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAGD- 183

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT FI GLCK G + E+  +   +    C  D  +Y+ +I  LCK  R+  A 
Sbjct: 184 -VQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAK 242

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHG 180
           EL         +  V   ++++ GL    ++++A  +   M E    AP+V+T+  +I G
Sbjct: 243 ELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDG 302

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +       +L KM+    +PD    + ++D   K
Sbjct: 303 LCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCK 340



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 94/188 (50%), Gaps = 13/188 (6%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L  EM+  G+     T+   I  LC+  +  +++++F  +  +K + D   Y+ +I  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K  +L++A   F  + +   + D VTY++++H L+   + ++ H +F +M     +P ++
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
           T+ T+++G+ +     + + L+ ++K     P  S+ S ++D L K             H
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCK-------------H 167

Query: 233 ERQEEVDE 240
           +R EE  E
Sbjct: 168 DRHEEARE 175


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  ++E A  L+ E+  KG  P V  +  +  G  +    +   +L  EM   G
Sbjct: 245 LIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRG 304

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + + Y   ID   K+G+IV++VE    +    C+ DI  Y+ LI G C+ G++  A 
Sbjct: 305 LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEAD 364

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L   +L +G L+ +  +Y+ +IH     G  D+A +  ++M E    P+++T+G L+HG
Sbjct: 365 QLLEQALGKG-LMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHG 423

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   E    + +  KM E+ V PDA I +I++  L K
Sbjct: 424 LVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCK 461



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 100/182 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ +N  ++ A  L+   + KG+ P +V +N +  G  +   ++ A    + M++  
Sbjct: 490 LVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRH 549

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY+  IDG  K   +  + ++FR +  +KC+ ++  Y+ LI+G C+ G L  +L
Sbjct: 550 LAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSL 609

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    LV +VVTYSI+I     + ++  A   F +M  N   PN +TF  L++GF
Sbjct: 610 KIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGF 669

Query: 182 IR 183
            +
Sbjct: 670 SK 671



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 104/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++  A  L +EML + + PD  ++ TL  G      ++ A KLF+     
Sbjct: 454 ILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEK 513

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   I G CK G + +++     ++      D   YS +IDG  K   L+ A
Sbjct: 514 GMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGA 573

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  + +     +VVTY+ +I+G    G + ++  +F +M+   + PNV+T+  LI  
Sbjct: 574 QKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGS 633

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +         +M     +P+    + +V+  +KN
Sbjct: 634 FCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKN 672



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 5/210 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIK-PDVVIHNTLFIGLFEIHQVERAFKLFDEM-Q 58
           I+I  Y  +  +E AL LY  +L      PDV+  N+L   L ++ ++E A KL+DEM +
Sbjct: 134 IVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLE 193

Query: 59  RDGVA---ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
            DG      D  +  I + GLCK G + E  +L        C  +I  Y+ LIDG CK G
Sbjct: 194 IDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKG 253

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            +E+A  LF  L     +  V TY  +I+G    G       L ++M    +  NV  + 
Sbjct: 254 DMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYN 313

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           T+I    +     K +E +  M E    PD
Sbjct: 314 TIIDARYKHGHIVKAVETIEGMIECGCKPD 343



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 14/219 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYCK   ++ A+   + M  + + PD   ++T+  G  + H ++ A K+F EM +  
Sbjct: 525 MIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMK 584

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  I+G C+ G +  S+++FR ++      ++  YS LI   CK  +L  A 
Sbjct: 585 CKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAA 644

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQ----------MDKAHDLFLD----MEENAV 167
             F  +     V + VT++ +++G   +G            +    +FL+    M  +  
Sbjct: 645 SFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGW 704

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           AP    + +++    +       ++L +KM  K  +PD+
Sbjct: 705 APRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDS 743



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 96/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C++ ++  A  L  + L KG+ P+   +  L     +    +RA     EM   G
Sbjct: 350 LISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERG 409

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   + GL   G +  ++ +   +       D   Y+ L+ GLCK  +L  A 
Sbjct: 410 HKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAK 469

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    ++ D   Y+ ++ G   +G +D+A  LF    E  + P ++ +  +I G+
Sbjct: 470 LLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGY 529

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +       +  +++MK++++ PD    S V+D
Sbjct: 530 CKFGMMKDAMACINRMKKRHLAPDEFTYSTVID 562



 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL--------------FEIHQ 46
           ILI  +CK  ++  A + + EML     P+ V  N L  G               F+ ++
Sbjct: 629 ILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENK 688

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
                  F  M  DG A  +  Y   +  LC+ G    +++L   +    C  D  ++  
Sbjct: 689 QSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVA 748

Query: 107 LIDGLCKSGR 116
           L+ G+C  GR
Sbjct: 749 LLHGVCLEGR 758


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 124/243 (51%), Gaps = 16/243 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  +C   EI+ AL+L  +M   G  P+ VI+ TL   L + ++V  A +L +EM   
Sbjct: 222 VVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM 281

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   I GLCK   I E+ ++   + I     D   Y  L++GLCK GR++ A
Sbjct: 282 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA 341

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
            +LF+ +P+     ++V ++ +IHG    G++D A  +  DM     + P+V T+ +LI+
Sbjct: 342 KDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 397

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-----------NEISLNSLPS 228
           G+ +       +E+LH M+ K   P+    +I+VD   K           NE+S + L  
Sbjct: 398 GYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKP 457

Query: 229 FTV 231
            TV
Sbjct: 458 NTV 460



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK   I  A+ ++ EM  KG KPDV   N+L  GL E+ +++ A  L  +M  +G
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TY   I+   + G I E+ +L   +      LD   Y+ LI GLC++G ++ A 
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R       ++ +I+I+GL   G +++A +   +M      P+++TF +LI+G 
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R       + +  K++ + + PD    + ++  L K
Sbjct: 645 CRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCK 681



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY K   +  AL +  +M +KG KP+V  +  L  G  ++ +++ A+ + +EM  DG
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  +   I   CK   I E+VE+FR +    C+ D+  ++ LI GLC+   ++ AL
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +VA+ VTY+ +I+     G++ +A  L  +M       + IT+ +LI G 
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  E  K   L  KM      P     +I+++ L ++
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRS 612



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 105/197 (53%), Gaps = 1/197 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G+  +  ++ A  + S+M+ S GI PDV  +N+L  G ++   V  A ++  +M+  
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +YTI +DG CK G I E+  +   +     + +   ++CLI   CK  R+  A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+F  +PR     DV T++ +I GL    ++  A  L  DM    V  N +T+ TLI+ 
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 181 FIRINEPSKVIELLHKM 197
           F+R  E  +  +L+++M
Sbjct: 539 FLRRGEIKEARKLVNEM 555



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 99/181 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN + +  EI+ A  L +EM+ +G   D + +N+L  GL    +V++A  LF++M RDG
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A    +  I I+GLC++G + E+VE  + + +     DI  ++ LI+GLC++GR+E  L
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L    +  D VT++ ++  L   G +  A  L  +  E+   PN  T+  L+   
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714

Query: 182 I 182
           I
Sbjct: 715 I 715



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L+NG CK   ++ A +L+  +     KP++VI NTL  G     +++ A  +  +M    
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRI----PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G  K G +  ++E+   +R   C+ ++ +Y+ L+DG CK G+++ A
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             + + +    L  + V ++ +I     + ++ +A ++F +M      P+V TF +LI G
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
              ++E    + LL  M  + V+ +    + +++  L + EI
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEI 545



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C++  +E A+    EM+ +G  PD+V  N+L  GL    ++E    +F ++Q +
Sbjct: 604 ILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE 663

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           G+  DT T+   +  LCK G++ ++  L
Sbjct: 664 GIPPDTVTFNTLMSWLCKGGFVYDACLL 691



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 39/203 (19%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C     + A N++ +MLS+ I P +     +      +++++ A  L  +M + 
Sbjct: 191 ILVSGNCH----KVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH 246

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++  Y   I  L K   + E+++L   + ++ C  D + ++ +I GLCK  R+  A
Sbjct: 247 GCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 306

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++ + +              +I G                      AP+ IT+G L++G
Sbjct: 307 AKMVNRM--------------LIRGF---------------------APDDITYGYLMNG 331

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
             +I       +L +++ +  ++
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIV 354



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDG 110
           +L  +M+ +G+      +   +    K G+  ++  L   +R +  CE   ++Y+ +++ 
Sbjct: 132 RLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEI 191

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L      ++A  +F+ +    +   + T+ +++       ++D A  L  DM ++   PN
Sbjct: 192 LVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPN 251

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + + TLIH   + N  ++ ++LL +M     +PDA   + V+  L K
Sbjct: 252 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 299



 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            +  ++   C    ++ AL L   + +   V + V Y  +IH L    ++++A  L  +M
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278

Query: 163 EENAVAPNVITFGTLIHG---FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 P+  TF  +I G   F RINE +K++   ++M  +   PD      +++ L K
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMV---NRMLIRGFAPDDITYGYLMNGLCK 334


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  ++E A  L+ E+  KG  P V  +  +  G  +    +   +L  EM   G
Sbjct: 226 LIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + + Y   ID   K+G+IV++VE    +    C+ DI  Y+ LI G C+ G++  A 
Sbjct: 286 LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEAD 345

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L   +L +G L+ +  +Y+ +IH     G  D+A +  ++M E    P+++T+G L+HG
Sbjct: 346 QLLEQALGKG-LMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHG 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   E    + +  KM E+ V PDA I +I++  L K
Sbjct: 405 LVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCK 442



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK    + A N   EM  +G KPD+V +  L  GL    +V+ A  + ++M   G
Sbjct: 366 LIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y I + GLCK   +  +  L   +       D   Y+ L+DG  ++G L+ A 
Sbjct: 426 VFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEAR 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF       +   +V Y+ MI G    G M  A      M++  +AP+  T+ T+I G+
Sbjct: 486 KLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGY 545

Query: 182 IR---INEPSKVIELLHKMKEK-NVM 203
           ++   ++   K+   + KMK K NVM
Sbjct: 546 VKQHDLDGAQKMFREMVKMKCKPNVM 571



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C++ ++  A  L  + L KG+ P+   +  L     +    +RA     EM   G
Sbjct: 331 LISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERG 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   + GL   G +  ++ +   +       D   Y+ L+ GLCK  +L  A 
Sbjct: 391 HKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAK 450

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    ++ D   Y+ ++ G   +G +D+A  LF    E  + P ++ +  +I G+
Sbjct: 451 LLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGY 510

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +       +  +++MK++++ PD    S V+D   K 
Sbjct: 511 CKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQ 548



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK  ++  A  L +EML + + PD  ++ TL  G      ++ A KLF+     
Sbjct: 435 ILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEK 494

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   I G CK G + +++     ++      D   YS +IDG  K   L+ A
Sbjct: 495 GMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGA 554

Query: 121 LELFHSL 127
            ++F  +
Sbjct: 555 QKMFREM 561



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 86/183 (46%), Gaps = 21/183 (11%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR-TLRILKCELDIQAYSCLIDGL 111
           + + M+ + ++      +I I     +G + +++EL+   L+      D+ A + L++ L
Sbjct: 116 VLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNML 175

Query: 112 CKSGRLEIALELFHSLPRGV--------------------LVADVVTYSIMIHGLYNDGQ 151
            K GR+EIA +    + +G+                     + +++ Y+ +I G    G 
Sbjct: 176 VKLGRIEIARKFTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGD 235

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           M+ A+ LF++++     P V T+G +I+GF +  +   +  LL +M  + +  +  + + 
Sbjct: 236 MEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNT 295

Query: 212 VVD 214
           ++D
Sbjct: 296 IID 298



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ +N  ++ A  L+   + KG+ P +V +N +  G  +   ++ A    + M++  
Sbjct: 471 LVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRH 530

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY+  IDG  K   +  + ++FR +  +KC+ ++      +DGL   G L I  
Sbjct: 531 LAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNV------MDGL--QGLLLIIP 582

Query: 122 ELF 124
            LF
Sbjct: 583 SLF 585


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K     L+L ++M S G+ P+V   N L      +++V  AF +  ++ + G
Sbjct: 51  LLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I GLC  G I E++ LF  +     + ++  Y  LI+GLCK G    A+
Sbjct: 111 HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+ +G    DVV Y+ +I  L  D Q+ +A +LF  M    ++P++ T+ +L+H  
Sbjct: 171 RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + E   V  LL++M    ++PD  I S VVD L K
Sbjct: 231 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK 267



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C    +  A ++ +++L  G +PD     TL  GL    ++  A  LFD+M  +
Sbjct: 85  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I+GLCK G    ++ L R++    C+ D+  Y+ +ID LCK  ++  A
Sbjct: 145 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ TY+ ++H L N  +      L   M  + + P+V+ F T++  
Sbjct: 205 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  + ++  E++  M ++ V PD    + ++D
Sbjct: 265 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMD 298



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 112/225 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C   +I  AL+L+ +M+ +G +P+VV + TL  GL ++     A +L   M++  
Sbjct: 121 LIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN 180

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  ID LCK+  + E+  LF  +       DI  Y+ L+  LC     +   
Sbjct: 181 CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT 240

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    ++ DVV +S ++  L  +G++ +AH++   M +  V P+V+T+ TL+ G 
Sbjct: 241 TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGH 300

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
              +E  + +++   M  K   PD    + +++   K+   L SL
Sbjct: 301 CLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSL 345



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 113/252 (44%), Gaps = 34/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++++  A NL+S+M+ +GI PD+  + +L   L  + + +    L ++M    
Sbjct: 191 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 250

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  +D LCK G + E+ E+   +     E D+  Y+ L+DG C    ++ A+
Sbjct: 251 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 310

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQ------------------------------ 151
           ++F  + R     DV++Y+ +I+    DG                               
Sbjct: 311 KVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKD 370

Query: 152 ----MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
                +K   L  +M  + + PNV+ F T++    +  +  +  +++  M ++ V P+A 
Sbjct: 371 KMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNAV 430

Query: 208 IVSIVVDLLAKN 219
            V   +  + KN
Sbjct: 431 KVFDTMKCVEKN 442



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 63/121 (52%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++   + LI+  C   R+  A  +   + +     D  T++ +I GL  +G++ +A  LF
Sbjct: 79  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 138

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             M +    PNV+T+GTLI+G  ++   S  I LL  M++ N  PD  I + ++D L K+
Sbjct: 139 DKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 198

Query: 220 E 220
            
Sbjct: 199 R 199


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD-EMQR 59
           +LI+GYCK  EI  AL L   M    + PDVV +NT+   L +  +++ A ++ D +MQR
Sbjct: 185 VLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQR 241

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +    D  TYTI I+  CK   + ++++L   +R   C+ D+  Y+ LI+G+CK GRL+ 
Sbjct: 242 E-CYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDE 300

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+   + +P      +V+T++I++  + + G+   A     +M     +P+V+TF  LI+
Sbjct: 301 AIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILIN 360

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              R     + I++L KM +    P++   + ++  L K++
Sbjct: 361 FLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDK 401



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 117/226 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   I  A+++  +M   G  P+ + +N L   L +  ++ERA +  D M   
Sbjct: 357 ILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSR 416

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G +  +VE+   L    C   +  Y+ +IDGL K G+ + A
Sbjct: 417 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDA 476

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +    L  D++TYS ++ GL  +G++D+A   F D+EE  V PN IT+ +++ G
Sbjct: 477 IKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLG 536

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +  +  + I+ L  M  +   P  +   I+++ LA   ++  +L
Sbjct: 537 LCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEAL 582



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A+   + M S G +P+V+ HN +   +    +   A K   EM R 
Sbjct: 287 VLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRK 346

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+ G I  ++++   +    C  +  +Y+ L+  LCK  ++E A
Sbjct: 347 GCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERA 406

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ ++  L  DG++D A ++   +     +P +IT+ T+I G
Sbjct: 407 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDG 466

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +    I+LL +MK K + PD    S +V  L++
Sbjct: 467 LSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSR 504



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 110/214 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK+K++E A+     M+S+G  PD+V +NTL   L +  +V+ A ++ +++   G
Sbjct: 393 LLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKG 452

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G   ++++L   ++    + DI  YS L+ GL + G+++ A+
Sbjct: 453 CSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAI 512

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             FH L    +  + +TY+ ++ GL    Q  +A D    M      P   ++  LI G 
Sbjct: 513 AFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGL 572

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
                  + +ELL+++  + V+  +S   +VV +
Sbjct: 573 AYEGLAKEALELLNELCSRGVVKKSSAEQVVVKI 606



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N E+E       +M+ +G  PD++   +L  GL +  +  +A ++ + ++  G   D  
Sbjct: 122 RNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVI 181

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G CK G I  +++L   + +     D+  Y+ ++  LC SG+L+ A+E+    
Sbjct: 182 TYNVLISGYCKTGEIGSALQLLDRMSV---SPDVVTYNTILRTLCDSGKLKEAMEVLDRQ 238

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+I+I     +  + +A  L  +M +    P+V+T+  LI+G  +    
Sbjct: 239 MQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRL 298

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVV 213
            + I  L+ M      P+    +I++
Sbjct: 299 DEAIRFLNHMPSYGCQPNVITHNIIL 324



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L ++G LE   +    +     + D++  + +I GL   G+  KA  +   +E++   P+
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           VIT+  LI G+ +  E    ++LL +M   +V PD    + ++  L 
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLC 223


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            + EMLSKG++PD   +NT       +  + ++F+L + +  +G+++DT TY I IDGLC
Sbjct: 464 FFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLC 523

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + ++ EL   +     + D   Y+CLI   C+ G L  A + F+ +    L    V
Sbjct: 524 KTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAV 583

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+++IH     G +  A+  F  M E  V PN IT+  LIH   R+          ++M
Sbjct: 584 TYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEM 643

Query: 198 KEKNVMPDASIVSIVVD 214
            E+ ++P+    ++++D
Sbjct: 644 LERGLVPNKYTYTLLID 660



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GYC+  ++E A  L  EM+ +G  PDV  +  L  G   +  +    + FDEM   
Sbjct: 412 ILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSK 471

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I      G I +S +L   + +     D   Y+ LIDGLCK+G L+ A
Sbjct: 472 GLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDA 531

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L  D +TY+ +IH     G + +A   F DM  + + P+ +T+  +IH 
Sbjct: 532 EELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHA 591

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R            KM E+ V P+    ++++  L +
Sbjct: 592 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCR 629



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G      ++   +L  EM ++GI P VV +N +  GL +  Q+E A   F EM+  G
Sbjct: 308 LITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   ++G CK G   E++ LF  LR       +  Y+ LIDG C+ G LE A 
Sbjct: 368 LLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEAR 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + DV TY+I++ G +N   +    + F +M    + P+   + T I   
Sbjct: 428 RLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAE 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I + + SK  +L   +  + +  D    +I++D L K 
Sbjct: 488 ITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKT 525



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 45/252 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  ++ +IE A   + EM + G+ PDV+ +N+L  G  +    + A  LF +++R G
Sbjct: 343 MIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAG 402

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY I IDG C+ G + E+  L   +    C  D+  Y+ L+ G      L +  
Sbjct: 403 LAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTR 462

Query: 122 ELFHS-LPRGV----------------------------------LVADVVTYSIMIHGL 146
           E F   L +G+                                  + +D VTY+I+I GL
Sbjct: 463 EFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGL 522

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH-----GFIRINEPSKVIELLHKMKEKN 201
              G +  A +L + M  N + P+ IT+  LIH     GF+R     +  +  + M    
Sbjct: 523 CKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLR-----EARKFFNDMISDG 577

Query: 202 VMPDASIVSIVV 213
           + P A   ++++
Sbjct: 578 LPPSAVTYTVII 589



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 3/199 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA--ADTRTYTIFIDG 75
           +++EML  GI+P +V +NTL     +  + ++   L  EM+  G +   +  TY + I G
Sbjct: 218 VHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAG 277

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + GY+ E+ EL   +R+ K +     Y+ LI GL   G ++   +L   +    ++  
Sbjct: 278 LARKGYLEEAAELVEEMRLSK-KASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPT 336

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTY+ MIHGL   GQ++ A   F++M    + P+VIT+ +L++G+ +     + + L  
Sbjct: 337 VVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFG 396

Query: 196 KMKEKNVMPDASIVSIVVD 214
            ++   + P     +I++D
Sbjct: 397 DLRRAGLAPTVLTYNILID 415



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK   ++ A  L  +M+S G++PD + +  L     E   +  A K F++M  D
Sbjct: 517 ILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISD 576

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT+ I   C+ G +  +   FR +     E +   Y+ LI  LC+ GR ++A
Sbjct: 577 GLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 636

Query: 121 LELFHSLPRGVLVADVVTYSIMIHG 145
              F+ +    LV +  TY+++I G
Sbjct: 637 YRHFYEMLERGLVPNKYTYTLLIDG 661



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 2/183 (1%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           LSK  K     +N L  GL     V++   L  EM+ +G+     TY   I GL ++G I
Sbjct: 296 LSK--KASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQI 353

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
             +   F  +R +    D+  Y+ L++G CK+G  + AL LF  L R  L   V+TY+I+
Sbjct: 354 EAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNIL 413

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I G    G +++A  L  +M E    P+V T+  L+ G   +   +   E   +M  K +
Sbjct: 414 IDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGL 473

Query: 203 MPD 205
            PD
Sbjct: 474 RPD 476


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN ++  A NL+ +M   G+ P+   ++ L  G F+       F++++ M R G
Sbjct: 199 LIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSG 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   I   C +G + ++ ++F  +R       +  Y+ LI GLC+  +   A+
Sbjct: 259 IVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAV 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H + +  L  ++VTY+I+I+G  + G+MD A  LF  ++ + ++P ++T+ TLI G+
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++   +  ++L+ +M+E+ +       +I++D  A+
Sbjct: 379 SKVENLAGALDLVKEMEERCIARSKVTYTILIDAFAR 415



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 108/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+ K         +Y  M   GI P+   +N L         V++AFK+F EM+  
Sbjct: 233 VLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREK 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A    TY I I GLC+     E+V+L   +  +    +I  Y+ LI+G C  G+++ A
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+ L    L   +VTY+ +I G      +  A DL  +MEE  +A + +T+  LI  
Sbjct: 353 VRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDA 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R+N   K  E+   M++  ++PD    S+++
Sbjct: 413 FARLNYTDKACEMHSLMEKSGLVPDVYTYSVLI 445



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 113/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C+ K+   A+ L  ++   G+ P++V +N L  G  ++ +++ A +LF++++  
Sbjct: 303 ILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSS 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++    TY   I G  K   +  +++L + +           Y+ LID   +    + A
Sbjct: 363 GLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +  LV DV TYS++IHG   +G M +A   F  + E  + PN + + T+IHG
Sbjct: 423 CEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +     + + LL++M    ++P+ +     + LL ++E
Sbjct: 483 YCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDE 522



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 2/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+C   +++ A+ L++++ S G+ P +V +NTL  G  ++  +  A  L  EM+  
Sbjct: 338 ILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEER 397

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A    TYTI ID   +  Y  ++ E+   +       D+  YS LI G C +G ++ A
Sbjct: 398 CIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEA 457

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F SL    L  + V Y+ MIHG   +G   +A  L  +M  + + PNV +F + + G
Sbjct: 458 SKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTM-G 516

Query: 181 FIRINEPSKVIE-LLHKMKEKNVMPDASIVSIV 212
            +  +E  K  E LL +M    + P  S+  +V
Sbjct: 517 LLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 101/204 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+         L + +   G+ P+VVI+ TL  G  +   V  A  LF +M R 
Sbjct: 163 IMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRL 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY++ ++G  K G   E  +++  +       +  AY+CLI   C  G ++ A
Sbjct: 223 GLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKA 282

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    +   V+TY+I+I GL    +  +A  L   + +  ++PN++T+  LI+G
Sbjct: 283 FKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILING 342

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F  + +    + L +++K   + P
Sbjct: 343 FCDVGKMDTAVRLFNQLKSSGLSP 366



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N Y  +   + AL     M+ +G  P     N L   L   +  ++A+ +F+ + +  
Sbjct: 95  IVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVL-KSK 153

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  ++ I I G C+ GY V    L   L       ++  Y+ LIDG CK+G + +A 
Sbjct: 154 VVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAK 213

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY---------------------------------- 147
            LF  + R  LV +  TYS++++G +                                  
Sbjct: 214 NLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEY 273

Query: 148 -NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            NDG +DKA  +F +M E  +A  V+T+  LI G  R  +  + ++L+HK+ +  + P+ 
Sbjct: 274 CNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNI 333

Query: 207 SIVSIVVD 214
              +I+++
Sbjct: 334 VTYNILIN 341


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 6/244 (2%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI+GYC+  ++   L L  EM + G  P +V + +L   L +   +E+   LF EM++ 
Sbjct: 1018 VLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKR 1077

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G + + + Y   ID LC      +++ + + +    C+ DI  ++ LI GLC  G +  A
Sbjct: 1078 GFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 1137

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                    R  L  + ++Y+ +IHG    G++  A DL ++M      P+V+TFG LIHG
Sbjct: 1138 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHG 1197

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
             +   + S+ + +  KM E+ V PD +I ++++  L K  +    LP+       EE+ E
Sbjct: 1198 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM----LPA--AKNILEEMLE 1251

Query: 241  SNVK 244
             NV+
Sbjct: 1252 KNVQ 1255



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +LI+G CK + +  A N+  EML K ++PD  ++ TL  G      +  A K+F+ M+  
Sbjct: 1228 VLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHK 1287

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            GV  D  +    I G C+ G + E++     +R + C  D   Y+ +I G  K G L  A
Sbjct: 1288 GVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGA 1347

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L     + +     +VVTYS +I+G    G  D A  LF +M+  A++PNV+T+  LI  
Sbjct: 1348 LRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGS 1407

Query: 181  FIR 183
              +
Sbjct: 1408 LFK 1410



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LIN   K  ++E   +L+ EM  +G  P+V I+N++   L       +A  +  +M   G
Sbjct: 1054 LINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASG 1113

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               D  T+   I GLC  G++ ++    R     +   +  +Y+ LI G C  G L +A 
Sbjct: 1114 CDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVAS 1173

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L   +       DVVT+  +IHGL   G++ +A  +   M E  V P+V  +  LI G 
Sbjct: 1174 DLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL 1233

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +         +L +M EKNV PD  + + ++D   ++E
Sbjct: 1234 CKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 1272



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 105/224 (46%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G     ++  AL +  +M  + + PDV I+N L  GL +   +  A  + +EM    
Sbjct: 1194 LIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKN 1253

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            V  D   Y   IDG  ++  + ++ ++F  +       DI + + +I G C+ G +  A+
Sbjct: 1254 VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAI 1313

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                ++ +   + D  TY+ +I G    G ++ A     DM +    PNV+T+ +LI+G+
Sbjct: 1314 LCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGY 1373

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +      L   M+ + + P+    +I++  L K +  L +
Sbjct: 1374 CKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRA 1417



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 5/197 (2%)

Query: 14   GALNLYSEMLSK-----GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
            G L   +EM  +     G  P+V   N L   L E  + + A KL+DEM      AD  +
Sbjct: 921  GMLGKATEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYS 980

Query: 69   YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
              + + GLC    + E ++L        C   +  Y+ LIDG C+ G +   L L   + 
Sbjct: 981  TCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEME 1040

Query: 129  RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                +  +VTY  +I+ L   G ++K   LFL+M +   +PNV  + ++I         +
Sbjct: 1041 TNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSAT 1100

Query: 189  KVIELLHKMKEKNVMPD 205
            + + +L +M      PD
Sbjct: 1101 QAMVILKQMFASGCDPD 1117



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 15/200 (7%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+GY K   + GAL    +M+ +  KP+VV +++L  G  +    + A  LF  MQ + 
Sbjct: 1334 VISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEA 1393

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL---------- 111
            ++ +  TYTI I  L K   ++ +   F T+ +  C  +      L++GL          
Sbjct: 1394 LSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINS 1453

Query: 112  --CKSGRL---EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
              C +  +   +  L +F  L   +       Y+ +I  L     + +A D    M +  
Sbjct: 1454 ICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKG 1513

Query: 167  VAPNVITFGTLIHGFIRINE 186
              PN ITF +L++GF  + +
Sbjct: 1514 YVPNPITFLSLLYGFCSVGK 1533



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 35/180 (19%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I GYC+   +  A+   S M   G  PD   + T+  G  +   +  A +   +M +  
Sbjct: 1299 MIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRK 1358

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +  TY+  I+G CK                                   +G  + A 
Sbjct: 1359 CKPNVVTYSSLINGYCK-----------------------------------TGDTDSAE 1383

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             LF ++    L  +VVTY+I+I  L+   ++ +A   F  M  N  +PN +T   L++G 
Sbjct: 1384 GLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 1443


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK      A      M S G+ P +V +N L  G  +  ++ RA ++  EM   G
Sbjct: 51  IMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY  F+ GLCK G + +++ LFR +   K  LD+  Y+ LIDGLC++G+L  A 
Sbjct: 111 HEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAY 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V     Y+ ++  L    ++++AH LF  M  + + P+ +TFG ++ G+
Sbjct: 171 SLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGY 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK------------NEISLNSLPSF 229
            R +     + LL +MK   + P   I + ++D L +              IS    P+ 
Sbjct: 231 CRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNS 290

Query: 230 TVHE--RQEEVDESNV 243
             +   R+++ D+SN+
Sbjct: 291 RTYALMRKQQTDDSNL 306



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 106/212 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+CK +++  AL +  EM  +G +P+ V +NT   GL +  +V+ A  LF  M   
Sbjct: 85  LLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEK 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   YT  IDGLC+ G + E+  L   +    C      Y+ ++  LCK  R+  A
Sbjct: 145 KIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    ++ D +T+ +M+ G     ++D A  L   M+   +AP  + + TLI  
Sbjct: 205 HKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDA 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             R    S+   LL +M  + + P++   +++
Sbjct: 265 LNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 92/198 (46%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  KG  P VV    L  GL + +++  AF+L + M   G   +   +   +D LCK G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
             E+     T+R +     I  Y+ LIDG CK  +L  ALE+   +       + VTY+ 
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
            +HGL   G++D A  LF  M E  +  +V  + TLI G  +  + ++   LL +M+   
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 202 VMPDASIVSIVVDLLAKN 219
            +P     + ++  L K 
Sbjct: 181 CVPKPGCYNAILSWLCKG 198



 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/88 (21%), Positives = 38/88 (43%)

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           +  VVT+ I++ GL    ++  A +L   M E    PN + F  ++    +    ++   
Sbjct: 7   IPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYG 66

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  M+   V P     ++++D   K E
Sbjct: 67  FIETMRSMGVSPTIVTYNLLIDGFCKEE 94


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 100/193 (51%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M   GI+P++V +N+L  G    + V+    L +EM   G   D  TY   IDGLCK G 
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + E   LF  ++   C  D+  YSCLI G CK  R+ +A  LF  + +   + DVVT+  
Sbjct: 61  VPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++ G  N G +D A  L  ++  +  +P+V T+ +L+ GF ++    +   +L +M +  
Sbjct: 121 LVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGE 180

Query: 202 VMPDASIVSIVVD 214
             P+  I + ++D
Sbjct: 181 CQPNVVIYTALID 193



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +     L+ EM +K   PDV+ ++ L  G  ++ ++  A  LFD+M +  
Sbjct: 51  LIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQA 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   ++G C  G + ++  L   +    C  D+  Y+ L+DG CK  R+  A 
Sbjct: 111 ALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAH 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +G    +VV Y+ +I    + G+   A+ L  +M  N V PN IT+ +LI GF
Sbjct: 171 RVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGF 230

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAKN 219
               +  +  ++L ++ + +N   D     +++D L + 
Sbjct: 231 CGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRT 269



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 96/205 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C    ++  L L  EM + G  PD+  +NTL  GL +  +V    +LF EM+   
Sbjct: 16  LIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKF 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  I G CK   I  +  LF  +       D+  +  L++G C +G ++ A 
Sbjct: 76  CNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAE 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       DV TY+ ++ G     +M +AH +   M +    PNV+ +  LI  F
Sbjct: 136 RLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAF 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
               +P+   +LL +M    V P+A
Sbjct: 196 CSAGKPTVAYKLLEEMVGNGVQPNA 220



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 50/253 (19%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK   I  A  L+ +ML +   PDVV   TL  G      V+ A +L +E+    
Sbjct: 86  LIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASD 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TYT  +DG CK   +VE+  + + +   +C+ ++  Y+ LID  C +G+  +A 
Sbjct: 146 CSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAY 205

Query: 122 ELFHSL------PRGVLV------------------------------ADVVTYSIMIHG 145
           +L   +      P  +                                AD+  Y +M+ G
Sbjct: 206 KLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDG 265

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G+M  A +L   ++++   P    +  LI G + ++   +              P+
Sbjct: 266 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGEMTLSRKGR--------------PN 311

Query: 206 ASIVSIVVDLLAK 218
           A +   V+  LA+
Sbjct: 312 AKVYEAVIQELAR 324



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I G C    +  ++ L   +    C  DI  Y+ LIDGLCK+GR+   
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEV 64

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       DV+TYS +I G     +++ A  LF DM + A  P+V+TF TL+ G
Sbjct: 65  NRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEG 124

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +           LL ++   +  PD    + +VD   K
Sbjct: 125 YCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCK 162


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   ++ A+ +   ML +G  PDV  +N++  GL ++ +V+ A ++ D+M    
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +T TY   I  LCK   + E+ EL R L       D+  ++ LI GLC +    +A+
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       D  TY+++I  L + G++D+A ++   ME +  A +VIT+ TLI GF
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N+  +  E+  +M+   V  ++   + ++D L K+
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKS 518



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C  +    A+ L+ EM SKG +PD   +N L   L    +++ A  +  +M+  G
Sbjct: 406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A    TY   IDG CK     E+ E+F  + +     +   Y+ LIDGLCKS R+E A 
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       D  TY+ ++      G + KA D+   M  N   P+++T+GTLI G 
Sbjct: 526 QLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585

Query: 182 IRINEPSKVIELLH--KMKEKNVMPDA 206
            +        +LL   +MK  N+ P A
Sbjct: 586 CKAGRVEVASKLLRSIQMKGINLTPHA 612



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 103/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  ++E A  L   + SKGI PDV   N+L  GL        A +LF+EM+  G
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ID LC  G + E++ + + + +  C   +  Y+ LIDG CK+ +   A 
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAE 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + VTY+ +I GL    +++ A  L   M      P+  T+ +L+  F
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHF 550

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  K  +++  M      PD      ++  L K
Sbjct: 551 CRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  E++ A+ +  +M+++   P+ V +NTL   L + +QVE A +L   +   G
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   I GLC       ++ELF  +R   CE D   Y+ LID LC  G+L+ AL
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +        V+TY+ +I G     +  +A ++F +ME + V+ N +T+ TLI G 
Sbjct: 456 NMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +        +L+ +M  +   PD
Sbjct: 516 CKSRRVEDAAQLMDQMIMEGQKPD 539



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 108/213 (50%), Gaps = 1/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C   +++ ALN+  +M   G    V+ +NTL  G  + ++   A ++FDEM+  
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ ++ TY   IDGLCK+  + ++ +L   + +   + D   Y+ L+   C+ G ++ A
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKA 559

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++  ++       D+VTY  +I GL   G+++ A  L   ++   +      +  +I G
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619

Query: 181 FIRINEPSKVIELLHKMKEKN-VMPDASIVSIV 212
             R  + ++ I L  +M E+N   PDA    IV
Sbjct: 620 LFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
           ++ GY +  +++GAL +  +M+  G     V  N +  G  +  +VE A     EM  +D
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   ++GLCK G++  ++E+   +     + D+  Y+ +I GLCK G ++ A
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +       + VTY+ +I  L  + Q+++A +L   +    + P+V TF +LI G
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
                     +EL  +M+ K   PD    ++++D L
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 38/252 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +   A  ++ EM   G+  + V +NTL  GL +  +VE A +L D+M  +G
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   +   C+ G I ++ ++ + +    CE DI  Y  LI GLCK+GR+E+A 
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 122 ELFHSLP-RGVLVA-----------------------------------DVVTYSIMIHG 145
           +L  S+  +G+ +                                    D V+Y I+  G
Sbjct: 596 KLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRG 655

Query: 146 LYN-DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           L N  G + +A D  +++ E    P   +   L  G + ++    +++L++ + +K    
Sbjct: 656 LCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFS 715

Query: 205 DASIVSIVVDLL 216
           +   VS+V  LL
Sbjct: 716 EEE-VSMVKGLL 726



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 102/206 (49%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C+  ++  A+ +  +M S G+ PD     T+  G  E   ++ A ++ ++M   
Sbjct: 194 VLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF 253

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEI 119
           G +    +  + + G CK G + +++   + +        D   ++ L++GLCK+G ++ 
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+E+   + +     DV TY+ +I GL   G++ +A ++   M     +PN +T+ TLI 
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIS 373

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
              + N+  +  EL   +  K ++PD
Sbjct: 374 TLCKENQVEEATELARVLTSKGILPD 399



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 97/201 (48%), Gaps = 1/201 (0%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
           +++M   GIKPDV   N L   L   HQ+  A  + ++M   G+  D +T+T  + G  +
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE 236

Query: 79  NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADVV 137
            G +  ++ +   +    C     + + ++ G CK GR+E AL     +  +     D  
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T++ +++GL   G +  A ++   M +    P+V T+ ++I G  ++ E  + +E+L +M
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
             ++  P+    + ++  L K
Sbjct: 357 ITRDCSPNTVTYNTLISTLCK 377


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 111/214 (51%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            IL+ G    + +  A   + EMLSKG++PD   +NT       +  + RAF+L + +  +
Sbjct: 1335 ILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLE 1394

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+++DT TY I I GLCK G + ++ EL   +     + D   Y+CLI   C+ G L  A
Sbjct: 1395 GISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREA 1454

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++F+++    L+   VT++++IH     G +  A+  F  M E  V PN IT+  LIH 
Sbjct: 1455 RKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 1514

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              R+          H+M E+ ++ +    ++++D
Sbjct: 1515 LCRMGRTQLASHHFHEMLERGLVANKYTYTLLID 1548



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 2/237 (0%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI+GYC+  ++E A  L  EM  +G  P+V  +  L  G   +  +  A + FDEM   
Sbjct: 1300 ILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSK 1359

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  D   Y   I      G I  + EL   L +     D   Y+ LI GLCK+G L+ A
Sbjct: 1360 GLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDA 1419

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             EL   +    L  D +TY+ +IH     G + +A  +F +M  + + P+ +TF  +IH 
Sbjct: 1420 KELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHA 1479

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            + R            KM E+ V P+    ++++  L +  +    L S   HE  E 
Sbjct: 1480 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCR--MGRTQLASHHFHEMLER 1534



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 92/181 (50%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI+G CK   ++ A  L  +M+S G++PD + +  L     E   +  A K+F+ M  D
Sbjct: 1405 ILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISD 1464

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+     T+T+ I   C+ G +  +   FR +     E +   Y+ LI  LC+ GR ++A
Sbjct: 1465 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 1524

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
               FH +    LVA+  TY+++I G    G  + A   + +M +N + P+ +T   L+ G
Sbjct: 1525 SHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKG 1584

Query: 181  F 181
            F
Sbjct: 1585 F 1585



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 3/206 (1%)

Query: 1    ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
            ++I G  +  ++E A  L   M LSK  K     +N L  GL     V++ + L  EM+ 
Sbjct: 1161 VVITGLTRKGDLEEAAELVEGMRLSK--KASSFTYNPLITGLLARGCVKKVYDLQLEMEN 1218

Query: 60   DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +G+     TY   I GL ++G +  +   F  +R +    D+  Y+ L++G CK+G L+ 
Sbjct: 1219 EGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKE 1278

Query: 120  ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            AL LF  L R  L   V+TY+I+I G    G +++A  L  +M E    PNV T+  L+ 
Sbjct: 1279 ALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMK 1338

Query: 180  GFIRINEPSKVIELLHKMKEKNVMPD 205
            G + +   +   E   +M  K + PD
Sbjct: 1339 GSLNVRSLAMAREFFDEMLSKGLQPD 1364



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L+NGYCK   ++ AL L+ ++   G+ P V+ +N L  G   +  +E A  L +EM   G
Sbjct: 1266 LLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQG 1325

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +  TYTI + G      +  + E F  +     + D  AY+  I      G +  A 
Sbjct: 1326 CLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAF 1385

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            EL   L    + +D VTY+I+IHGL   G +  A +L + M  N + P+ IT+  LIH  
Sbjct: 1386 ELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAH 1445

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                   +  ++ + M    ++P A   ++++
Sbjct: 1446 CERGLLREARKIFNNMISDGLLPSAVTFTVII 1477



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 103/218 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI G      ++   +L  EM ++GI P VV +N +  GL +   VE A   F EM+  G
Sbjct: 1196 LITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMG 1255

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D  TY   ++G CK G + E++ LF  LR       +  Y+ LIDG C+ G LE A 
Sbjct: 1256 LLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEAR 1315

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             L   +     + +V TY+I++ G  N   +  A + F +M    + P+   + T I   
Sbjct: 1316 ILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAE 1375

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + + + ++  EL   +  + +  D    +I++  L K 
Sbjct: 1376 LILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKT 1413



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 3/199 (1%)

Query: 18   LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA--DTRTYTIFIDG 75
            ++ EML  GI+P +V +NTL     +  + ++   L  EM+  G     +  TY + I G
Sbjct: 1106 VHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITG 1165

Query: 76   LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
            L + G + E+ EL   +R+ K +     Y+ LI GL   G ++   +L   +    ++  
Sbjct: 1166 LTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPT 1224

Query: 136  VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
            VVTY+ MIHGL   G ++ A   F +M    + P+VIT+ +L++G+ +     + + L  
Sbjct: 1225 VVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFG 1284

Query: 196  KMKEKNVMPDASIVSIVVD 214
             ++   + P     +I++D
Sbjct: 1285 DLRRAGLAPTVLTYNILID 1303



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 3/192 (1%)

Query: 16   LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
            L+ + EM S G+ PDV   N +   L +  + +    + +EM   G+     TY   +D 
Sbjct: 1069 LSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128

Query: 76   LCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
              K G   +   L + +  R   C  +   Y+ +I GL + G LE A EL   + R    
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGM-RLSKK 1187

Query: 134  ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            A   TY+ +I GL   G + K +DL L+ME   + P V+T+  +IHG ++          
Sbjct: 1188 ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVK 1247

Query: 194  LHKMKEKNVMPD 205
              +M+   ++PD
Sbjct: 1248 FAEMRAMGLLPD 1259


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 110/212 (51%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G C+   +E AL+    ++S     +V  +N +  GL +  +++ A K+ +EM+  G+
Sbjct: 297 IYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGI 356

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           + D  TY+I I G CK G + + + L   ++    E  + +YS L  GLCK    +I+L+
Sbjct: 357 SPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLD 416

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +F  L       D   YSI+I G    G +D AH L  +M  N +AP+   F +L+HGF 
Sbjct: 417 IFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFC 476

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++      +E  + M E  ++P  +  ++++D
Sbjct: 477 KMGLWVNALEFFNMMLEGGILPSIATCNVIID 508



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK ++ E AL L+  ML + + P VV+++TL  G  +    ++A  L+  M + G
Sbjct: 541 VINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIG 600

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YTI I+ LC    + E+  LF+ +       D  +Y+ +I G C+ G +  A 
Sbjct: 601 VTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAW 660

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ + +   +  VVTY+ ++ G     ++D A  L  +M+   + P+V+T+  LI   
Sbjct: 661 ALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAH 720

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R     K +E+L++MKE  V+PD
Sbjct: 721 RRRGNLDKALEMLNEMKENGVLPD 744



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 111/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +C+   +E ALNL +EM ++GI P++  +N +   L +  + ERA +LF  M + 
Sbjct: 505 VIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKR 564

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V      Y+  IDG  K     +++ L+  +  +    D+ AY+ LI+ LC   R+  A
Sbjct: 565 NVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEA 624

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D ++Y+ +I G    G M KA  LF +M +    P V+T+ +L+ G
Sbjct: 625 YNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDG 684

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + ++N       L+ +MK K + PD    ++++
Sbjct: 685 YCKMNRIDIADMLIDEMKRKGITPDVVTYNVLI 717



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK      AL  ++ ML  GI P +   N +        +VE A  L +EMQ  G
Sbjct: 471 LVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQG 530

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I+ LCK      ++ELF  +        +  YS LIDG  K    + AL
Sbjct: 531 IFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKAL 590

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + +  +  D+V Y+I+I+ L +  +M +A++LF  M EN + P+ I++ ++I GF
Sbjct: 591 MLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGF 650

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            RI +  K   L ++M ++  +P     + +VD
Sbjct: 651 CRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVD 683



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 115/226 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK  ++E  L L  EM    ++P +V +++LF GL +    + +  +F ++   
Sbjct: 365 ILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAA 424

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+I I G C  G +  + +L   +       D   +  L+ G CK G    A
Sbjct: 425 GYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNA 484

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE F+ +  G ++  + T +++I     +G++++A +L  +M+   + PN+ T+  +I+ 
Sbjct: 485 LEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINR 544

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +  +  + +EL   M ++NV+P   + S ++D  AK   S  +L
Sbjct: 545 LCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKAL 590



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 109/230 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  E++ AL +  EM S GI PDV  ++ L  G  +   VE+   L +EM+   
Sbjct: 331 IIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSN 390

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     +Y+    GLCK      S+++FR L     + D  AYS LI G C  G L+ A 
Sbjct: 391 MEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAH 450

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + R  L  D   +  ++HG    G    A + F  M E  + P++ T   +I   
Sbjct: 451 KLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAH 510

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231
            R     + + L+++M+ + + P+    + V++ L K   S  +L  F +
Sbjct: 511 CREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPL 560



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 95/176 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K    + AL LY+ ML  G+ PD+V +  L   L    ++  A+ LF +M  +G
Sbjct: 576 LIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENG 635

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +YT  I G C+ G + ++  LF  +        +  Y+ L+DG CK  R++IA 
Sbjct: 636 MTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIAD 695

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            L   + R  +  DVVTY+++I      G +DKA ++  +M+EN V P+ +T+  L
Sbjct: 696 MLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMML 751



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 112/216 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G CK +  + +L+++ ++ + G K D   ++ L  G      ++ A KL +EM R+ 
Sbjct: 401 LFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNN 460

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D   +   + G CK G  V ++E F  +        I   + +ID  C+ GR+E AL
Sbjct: 461 LAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEAL 520

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  ++ TY+ +I+ L  + + ++A +LF  M +  V P+V+ + TLI GF
Sbjct: 521 NLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGF 580

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            + +   K + L  +M +  V PD    +I++++L 
Sbjct: 581 AKQSNSQKALMLYARMLKIGVTPDMVAYTILINILC 616



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 8/236 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  +  N  +E A++++ +    G++      N L   L E ++ E    LF+EM+  
Sbjct: 184 LLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKST 243

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-------IQAYSCLIDGLCK 113
           G   +  TYTI ++  CK  +    ++  +   IL+ E++       +  YS  I GLC+
Sbjct: 244 GPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILE-EMERNGESPTVVTYSTYIYGLCR 302

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            G +E AL+   SL     + +V  Y+ +IHGL   G++D+A  +  +M+   ++P+V T
Sbjct: 303 VGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYT 362

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           +  LIHGF +  +  K + L+ +MK  N+ P     S +   L K  +S  SL  F
Sbjct: 363 YSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIF 418



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C    +  A NL+ +M   G+ PD + + ++  G   I  + +A+ LF+EM + 
Sbjct: 610 ILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQR 669

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TYT  +DG CK   I  +  L   ++      D+  Y+ LI    + G L+ A
Sbjct: 670 GHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKA 729

Query: 121 LELFHSLPRGVLVADVVTYSIM 142
           LE+ + +    ++ D +TY ++
Sbjct: 730 LEMLNEMKENGVLPDHMTYMML 751


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   +E A  + + M S G+KP+VV +NT+  GL    + + A +L  EM +  
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I +D  C+NG +   +EL   +    C  D+  Y+ +I+G CK G ++ A+
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+       + V+Y+I++ GL + G+   A +L   M +    PN +TF TLI+  
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFL 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IELL +M      PD    S V+D L K
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +C+N  ++  + L  +MLS G  PDV+ + T+  G  +   ++ A  L   M   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T +YTI + GLC  G  V++ EL   +    C  +   ++ LI+ LCK G +E A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       D+++YS +I GL   G+ ++A +L   M    ++PN I + ++   
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R    +KVI++   +K+  +  DA + + V+  L K
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   I+ A+ L   M S G KP+ V +  +  GL    +   A +L  +M + G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   I+ LCK G + +++EL + + +  C  D+ +YS +IDGL K+G+ E AL
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    +  + + YS +   L  +G+++K   +F ++++  +  + + +  +I   
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            +  E  + I+    M     MP+ S  ++++  LA   ++
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++N  C+   ++ A+ L  ++   G + D+V +N +  GL    +     +L DEM R 
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV 245

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A +  T+   I  LC+NG      E+   +    C  DI+ Y+ +IDG+CK G LE+A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ + +P   L  +VV Y+ ++ GL +  +  +A +L  +M +     + +TF  L+  
Sbjct: 306 NEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF 365

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +     +VIELL +M     MPD    + V++   K
Sbjct: 366 FCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCK 403



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    I  AL +  EM  KG  P   +++ +            + ++ + M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT    + ++ +C+ G + E+V L R L    CE DI +Y+ ++ GLC + R     
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     ++VT++ +I  L  +G  ++ H++   M E+   P++  + T+I G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +        E+L++M    + P+    + V+  L   E
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K       L  EM+     P++V  NTL   L      ER  ++  +M   G
Sbjct: 222 VLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R Y   IDG+CK G++  + E+   +     + ++  Y+ ++ GLC + R + A 
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +     D VT++I++     +G +D+  +L   M  +   P+VIT+ T+I+GF
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + LL  M      P+    +IV+  L  
Sbjct: 402 CKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+N   E    + ++M   G  PD+ ++ T+  G+ +   +E A ++ + M   G
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   + GLC      E+ EL   +    C LD   ++ L+D  C++G ++  +
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVI 376

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     + DV+TY+ +I+G   +G +D+A  L   M      PN +++  ++ G 
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     EL+ +M ++   P+    + +++ L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK   +E A+ L  +ML  G  PD++ ++T+  GL +  + E A +L + M   G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T  Y+     L + G + + +++F  ++      D   Y+ +I  LCK    + A+
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           + F  +     + +  TY+++I GL ++G   +A +L  ++
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 45/212 (21%)

Query: 62  VAADTRTYTIF--IDGLCKNGYIVESVEL----------------------------FR- 90
           V      YT F  + GLC  G I +++E+                            FR 
Sbjct: 105 VPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 91  TLRILK------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++R+L+      C LD    + +++ +C+ G ++ A+ L   L      AD+V+Y+ ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL    +     +L  +M     APN++TF TLI    R     +V E+L +M E    P
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 205 DASIVSIVVDLLAK-------NEISLNSLPSF 229
           D  + + ++D + K       NEI LN +PS+
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEI-LNRMPSY 315


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 116/213 (54%), Gaps = 1/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           L+ G+ KN  +  A  +Y EML KGIKPD   + T  +G   +   ++AF+L +EM   D
Sbjct: 450 LVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATD 509

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D   Y + IDGLCK G +V+++E  R +  +    D   Y+ +I G  ++G+ ++A
Sbjct: 510 HHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMA 569

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + R  L   V+TY ++I+G    G++++A     +M++  V PNV+T   L++G
Sbjct: 570 RNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYG 629

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +     +    L KM+E+ + P+    ++++
Sbjct: 630 MCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLI 662



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK    + A  +  EML+ GI P    +N     L +  +++ A +L   M    
Sbjct: 314 LIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM---- 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  +Y   + G  K G  VE+  LF  LR       I  Y+ LIDGLC+SG LE A 
Sbjct: 370 AAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQ 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +   ++  DV+TY+ ++ G   +G +  A +++ +M    + P+   + T   G 
Sbjct: 430 RLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE 489

Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAK 218
           +R+ +  K   L  +M    +  PD +I ++ +D L K
Sbjct: 490 LRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCK 527



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 4/211 (1%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           ++ +  A  +Y  M+  GI P V+  NT+    F+   +ER  K++ EM+R  +     T
Sbjct: 216 SRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVT 275

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y I I+G  KNG + E+      +R     +   +++ LI+G CK G  + A  +   + 
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +     TY+I I  L + G++D A +L   M     AP+V+++ TL+HG+I++ +  
Sbjct: 336 NAGIYPTTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKFV 391

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   L   ++  ++ P     + ++D L ++
Sbjct: 392 EASLLFDDLRAGDIHPSIVTYNTLIDGLCES 422



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 5/214 (2%)

Query: 2   LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L++GY K  K +E +L L+ ++ +  I P +V +NTL  GL E   +E A +L +EM   
Sbjct: 380 LMHGYIKMGKFVEASL-LFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQ 438

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TYT  + G  KNG +  + E++  +     + D  AY+    G  + G  + A
Sbjct: 439 LIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKA 498

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             L   +        D+  Y++ I GL   G + KA +    +    + P+ +T+ T+I 
Sbjct: 499 FRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIR 558

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G++   +      L  +M  K + P  S+++  V
Sbjct: 559 GYLENGQFKMARNLYDEMLRKRLYP--SVITYFV 590



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 35/206 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G CK   +  A+    ++   G+ PD V + T+  G  E  Q + A  L+DEM R 
Sbjct: 520 VRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRK 579

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY + I G  K G + ++ +    ++      ++  ++ L+ G+CK+      
Sbjct: 580 RLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKA------ 633

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                                        G +D+A+     MEE  + PN  ++  LI  
Sbjct: 634 -----------------------------GNIDEAYRYLCKMEEEGIPPNKYSYTMLISK 664

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
                +  +V++L  +M +K + PD 
Sbjct: 665 NCDFEKWEEVVKLYKEMLDKEIEPDG 690



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 48  ERAFKLFDEMQRDGVAADTR-TYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYS 105
           E AF+ F+ +QR      +R  +   ++ L +N  + E+  +  R++ +   E+D     
Sbjct: 100 EIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEAYLVAERSIDLGMHEID----D 155

Query: 106 CLIDG-----------------LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
            LIDG                   K    E  L  F  + R   +  V   +I++  L +
Sbjct: 156 LLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRD 215

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
              M+KA  ++  M E+ + P VITF T++    +  +  +V ++  +MK +N+      
Sbjct: 216 SRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVT 275

Query: 209 VSIVVDLLAKN 219
            +I+++  +KN
Sbjct: 276 YNILINGFSKN 286


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 105/205 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  +I+ A  ++  M S+G  PDVV +N +   L    ++E AF++ DE+ +DG
Sbjct: 137 MISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDG 196

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYTI I+     G I E++ELF  L       D+  Y+ +I G+CK G  + AL
Sbjct: 197 CKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRAL 256

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    L       DVV+Y+I++    N  + +    L  DM  +   PNV+T   LI  F
Sbjct: 257 DFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSF 316

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R     + + +L  MKEK + PD+
Sbjct: 317 CREGRVREAVNVLEVMKEKGLTPDS 341



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+   +  A+N+   M  KG+ PD   ++ L     +  +++ A +  ++M  D
Sbjct: 311 ILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSD 370

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   +  LCK G    ++++F  L  + C   ++AY+ +   L   G    A
Sbjct: 371 GCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKA 430

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   + R  +  D +TY+ +I  L  DG +D+A  L +DME     P VI+F  ++ G
Sbjct: 431 LEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLG 490

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             + +   + IELL  M EK  +P+ +   ++++ +A
Sbjct: 491 MCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIA 527



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G CK    + AL+    + ++G  PDVV +N L        + E   +L  +M   G
Sbjct: 242 IIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSG 301

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T++I I   C+ G + E+V +   ++      D  +Y  LI   CK GRL++A+
Sbjct: 302 CEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAI 361

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +     + D+V Y+ ++  L   G  D A D+F  ++E    P V  + T+    
Sbjct: 362 EYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSAL 421

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  K +E++ +M  K + PD    + ++  L ++
Sbjct: 422 WSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRD 459



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I   C   ++E A  +  E+L  G KP V+ +  L        ++  A +LFDE+   
Sbjct: 171 IMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSR 230

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY   I G+CK G    +++  R L    C  D+ +Y+ L+       R E  
Sbjct: 231 GLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDG 290

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +       +VVT+SI+I     +G++ +A ++   M+E  + P+  ++  LI  
Sbjct: 291 ERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISA 350

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +       IE L KM     +PD    + ++  L K
Sbjct: 351 FCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCK 388



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 101/204 (49%), Gaps = 1/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  C+  +   +L     ++SKG KPDVV+   L  G F    +++A ++ + ++  G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y   I G  K   I  + ++F  +R      D+  Y+ +I  LC  G+LE+A 
Sbjct: 128 -DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAF 186

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   L +      V+TY+I+I     +G++++A +LF ++    + P++ T+  +I G 
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     + ++ +  +  +   PD
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPD 270



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 92/196 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK   ++ A+    +M+S G  PD+V +NT+   L +    + A  +F+++   G
Sbjct: 347 LISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVG 406

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                R Y      L   G  ++++E+   +     + D   Y+ LI  LC+ G ++ A+
Sbjct: 407 CPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAI 466

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +        V++++I++ G+    ++ +  +L + M E    PN  ++  LI G 
Sbjct: 467 GLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGI 526

Query: 182 IRINEPSKVIELLHKM 197
                 ++ +EL + +
Sbjct: 527 AYAGWRAEAMELANSL 542


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK  E+  A  LY +M+     P+V  +N    GL    ++  A  +++EM   
Sbjct: 487 ILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAA 546

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY+  I G        ++ ELF T+    C  +   Y+CL+ GLCK  + + A
Sbjct: 547 GCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEA 606

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +       D VTY+ +++G  N G++++A ++F +M      P+V+ +  L+ G
Sbjct: 607 HELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKG 666

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  +P +  +L   M  +   PD    +I++D L+K
Sbjct: 667 FFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSK 704



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+N  CK K++  A  ++S M+S +   PDVV ++ L  G  +I ++ RA KL+ +M   
Sbjct: 452 LLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 511

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY  F++GL + G I ++  ++  +    C  D+  YS LI G   + + + A
Sbjct: 512 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQA 571

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF ++       + VTY+ ++HGL  + + D+AH+LF  M E    P+ +T+ TL++G
Sbjct: 572 HELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYG 631

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F  + +  + +E+  +M  K   PD
Sbjct: 632 FCNVGKIEQAVEVFDEMVSKGHDPD 656



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+   ++ + A  L+  M+S+G +P+ V +N L  GL +  + + A +LF +M   G
Sbjct: 558 LIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 617

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  + G C  G I ++VE+F  +     + D+ AY+CL+ G  ++G+   A 
Sbjct: 618 CDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAK 677

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHG 180
           +LF  +       D V+++IMI GL    ++D A ++F  ME++   +P+++T+ +LI G
Sbjct: 678 QLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFG 737

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD-----LLAKNEISLNSLPSFTV 231
                R++E  KV + + ++K   + PD    +++++     ++ + EI     P+F V
Sbjct: 738 LCGEQRLSEAMKVFKEIDRLK---LSPDPHAFNVLLEAIKCGIVYQFEIRFKDPPAFNV 793



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 2/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +NG  +   I  A  +Y EM++ G  PDV+ ++TL  G     + ++A +LF+ M   G
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRG 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   + GLCK     E+ ELFR +    C+ D   Y+ L+ G C  G++E A+
Sbjct: 583 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAV 642

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       DVV Y+ ++ G +  G+  +A  LF  M      P+ ++   +I G 
Sbjct: 643 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGL 702

Query: 182 IRINEPSKVIELLHKMKEKN-VMPD-ASIVSIVVDLLAKNEIS 222
            +       +E+  +M++ +   PD  +  S++  L  +  +S
Sbjct: 703 SKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLS 745



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           +I   CK   ++ AL+L   M+ +G  PD+  H+ L   L +  +++ A +    M R  
Sbjct: 380 VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKI 439

Query: 61  -GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLE 118
              ++   +Y   ++ LCK   + ++  +F T+   +  + D+ +YS LIDG CK   L 
Sbjct: 440 SSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELG 499

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L+  +     V +V TY+  ++GL   G++  A  ++ +M     +P+VIT+ TLI
Sbjct: 500 RAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLI 559

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           HGF    +  +  EL   M  +   P+A   + ++  L K
Sbjct: 560 HGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCK 599



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 75/296 (25%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N   ++K IE A  L+  M+  G KPD  I++ + +   ++  ++ AFKLF EM  +
Sbjct: 240 LLVNFVIQDKAIE-ASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVE 298

Query: 61  GVAA-DTRTYTIFIDGLCKNGYIVESVELFRTL----------------------RILKC 97
             A  +   +T F+ GLCK+G I ++ E  RT+                      RI K 
Sbjct: 299 SKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKA 358

Query: 98  E--------LDIQAYS----CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           E         +IQ  S     +I  LCK+GR++ AL L  ++ +     D+ T+S++I+ 
Sbjct: 359 EEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINE 418

Query: 146 LYNDGQMDKAHDLFLDME--------------------------------------ENAV 167
           L    ++ +A +    M+                                      E + 
Sbjct: 419 LCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSF 478

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            P+V+++  LI GF +I+E  +  +L  +M + N +P+ +  +  ++ L+ K  I+
Sbjct: 479 VPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIA 534



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 37/254 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKP------------------------------- 29
           +L+   C  +  + A+  + EM+ KG KP                               
Sbjct: 169 VLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEK 228

Query: 30  ----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
               ++++   L +      +   A KLF  M + G   D   Y+  +   CK   + E+
Sbjct: 229 RVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEA 288

Query: 86  VELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
            +LF  + +  K  L+  A++  + GLCKSG++E A E   ++   +  +  V Y ++I 
Sbjct: 289 FKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPV-YDMLIR 347

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L   G++DKA +  L++    + P+  T  ++I    +       + LL  M ++   P
Sbjct: 348 LLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCP 407

Query: 205 DASIVSIVVDLLAK 218
           D +  S++++ L K
Sbjct: 408 DMATHSMLINELCK 421



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           DG ++   T    I  L   G   E++  FR L+    + D+  Y+CL+D L +   L+ 
Sbjct: 91  DGKSSCRETVGAVIKHLRDGG---EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQ 147

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           A ++F  +    +V +  TY++++     +   D+A   F +M +    P+   +
Sbjct: 148 AGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLY 202


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 113/216 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYC+  + + A  L  EM+ KGI+P +V + +L   L + ++++ A  LF ++Q++
Sbjct: 396 ILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQE 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   +   IDG C NG I  + +L + +  +K   D   Y+ L+ G C+ G++E A
Sbjct: 456 GLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + R  +  D ++Y+ +I G    G M  A  +  +M      P ++T+  LI G
Sbjct: 516 RQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQG 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  E     ELL +M  K + PD S    +++ +
Sbjct: 576 LCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK  +++ A      M + G+KP+VV +NT+  G     + +RA  +F  M+  
Sbjct: 221 IMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDK 280

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLE 118
           G+  D  TY  FI GLCK G + E+  L    ++L+  L   A  Y+ LIDG C  G L+
Sbjct: 281 GLEPDCYTYNSFISGLCKEGRLEEASGLI--CKMLEGGLVPNAVTYNALIDGYCNKGDLD 338

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A      +    ++A +VTY++ IH L+ +G+M  A ++  +M E  + P+ +T   LI
Sbjct: 339 KAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +G+ R  +  +   LL +M  K + P     + ++ +L K
Sbjct: 399 NGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGK 438



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 101/209 (48%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           + K    + A  LY+EM    I+  +   N +   L +  ++++A +    M+  GV  +
Sbjct: 191 FLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPN 250

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TY   I G C  G    +  +F+T++    E D   Y+  I GLCK GRLE A  L  
Sbjct: 251 VVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLIC 310

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +  G LV + VTY+ +I G  N G +DKA+    +M    +  +++T+   IH      
Sbjct: 311 KMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEG 370

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                  ++ +M+EK +MPDA   +I+++
Sbjct: 371 RMGDADNMIKEMREKGMMPDAVTHNILIN 399



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 35/239 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G CK   +E A  L  +ML  G+ P+ V +N L  G      +++A+   DEM   G
Sbjct: 292 FISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKG 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG------ 115
           + A   TY +FI  L   G + ++  + + +R      D   ++ LI+G C+ G      
Sbjct: 352 IMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAF 411

Query: 116 -----------------------------RLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                        R++ A  LF  + +  L+ D++ ++ +I G 
Sbjct: 412 GLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGH 471

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             +G +D+A  L  +M+   V P+ IT+ TL+ G+ R  +  +  +LL +MK + + PD
Sbjct: 472 CANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPD 530



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 53  LFDEMQ--RDGVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           +FDE+   RD V A T   + + +   C+     E++E F  ++      +I+  + ++ 
Sbjct: 130 IFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLS 189

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
              K  R ++A  L+  + R  + + + T++IMI+ L  +G++ KA +    ME   V P
Sbjct: 190 LFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKP 249

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           NV+T+ T+IHG     +  +   +   MK+K + PD    +  +  L K
Sbjct: 250 NVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCK 298


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 130 ILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 189

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+G CK     ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 190 GVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLA 249

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 250 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDG 309

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N   D    + ++  L     S+++
Sbjct: 310 CCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDA 354



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 98/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 236 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD   Y+ LI GLC  GR   A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAE 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 356 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  G  +  + + A +LFDEM   G
Sbjct: 166 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKG 225

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 226 LVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G +D A +    M +     + + +  LI G 
Sbjct: 286 HLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGL 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                     ++L +M    + PDA   +++++   K 
Sbjct: 346 CXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 383



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 79/165 (47%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 159

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+G   + + D A++LF 
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 219

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN + F TLI G  +       +E+  +M  +++ PD
Sbjct: 220 EMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 264



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + JA  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 116 ILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 175

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 176 LDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTT 235

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 236 LIDGHCKN 243


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK      A      M S G+ P +V +N L  G  +  ++ RA ++  EM   G
Sbjct: 51  IMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY  F+ GLCK G + +++ LFR +   K  LD+  Y+ LIDGLC++G+L  A 
Sbjct: 111 HEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAY 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V     Y+ ++  L    ++++AH LF  M  + + P+ +TFG ++ G+
Sbjct: 171 SLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGY 230

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK------------NEISLNSLPSF 229
            R +     + LL +MK   + P   I + ++D L +              IS    P+ 
Sbjct: 231 CRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNS 290

Query: 230 TVHE--RQEEVDESNV 243
             +   R+++ D+SN+
Sbjct: 291 RTYALMRKQQTDDSNL 306



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK +++  AL +  EM  +G +P+ V +NT   GL +  +V+ A  LF  M   
Sbjct: 85  ILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEK 144

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   YT  IDGLC+ G + E+  L   +    C      Y+ ++  LCK  R+  A
Sbjct: 145 KIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEA 204

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    ++ D +T+ +M+ G     ++D A  L   M+   +AP  + + TLI  
Sbjct: 205 HKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDA 264

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             R    S+   LL +M  + + P++   +++
Sbjct: 265 LNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 92/198 (46%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M  KG  P VV    L  GL + +++  AF+L + M   G   +   +   +D LCK G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
             E+     T+R +     I  Y+ LIDG CK  +L  ALE+   +       + VTY+ 
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
            +HGL   G++D A  LF  M E  +  +V  + TLI G  +  + ++   LL +M+   
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 202 VMPDASIVSIVVDLLAKN 219
            +P     + ++  L K 
Sbjct: 181 CVPKPGCYNAILSWLCKG 198



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 38/88 (43%)

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           +  VVT+ I++ GL    ++  A +L   M E    PN + F  ++    +    ++   
Sbjct: 7   IPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYG 66

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  M+   V P     +I++D   K E
Sbjct: 67  YIETMRSMGVSPTIVTYNILIDGFCKEE 94


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++E    L+S+ML  G+KP+V+ +N L  GL    ++     + DEM    
Sbjct: 229 MIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRK 288

Query: 62  VAADTRTYTIFIDG-----------------------------------LCKNGYIVESV 86
           +  D  TY+I  DG                                   LCK+G I ++ 
Sbjct: 289 MVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAE 348

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           E+ +TL           Y+ LI+G C+ G LE A  +F  +   ++  D +TY+ +I+GL
Sbjct: 349 EVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGL 408

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++ +AHDL ++ME+N V P+V TF TLI  + R  +  K   +L  M+EK + P+ 
Sbjct: 409 GKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNV 468

Query: 207 SIVSIVVDLLAKN 219
                +V+   KN
Sbjct: 469 VSYGSIVNAFCKN 481



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G  K      A+ L+ EM  K + P+ + +NT+  G  +   +E  F+L+ +M R 
Sbjct: 193 VVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRH 252

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + + GLC+ G + E+  +   +   K   D   YS L DG  ++G  +  
Sbjct: 253 GLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTM 312

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF  S+ +GV +    T SI+++GL  DG++ KA ++   +  + +    + + TLI+
Sbjct: 313 LSLFEESVKKGVKIG-AYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLIN 371

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G+ +I +      +  +MK + + PD    + +++ L K E
Sbjct: 372 GYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVE 412



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 35/238 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+  ++EGA +++ +M S+ I+PD + +N L  GL ++ ++  A  L  EM+++G
Sbjct: 369 LINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNG 428

Query: 62  VAADTRTYTIFID-----------------------------------GLCKNGYIVESV 86
           V     T+   ID                                     CKNG I+E+V
Sbjct: 429 VNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAV 488

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +   + I       Q Y+ +ID   + G  + A  L   +    +   +VTY+++I GL
Sbjct: 489 AILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGL 548

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
               Q+ +A +L   +    +AP+VI++ TLI      +   + +EL  +M +  + P
Sbjct: 549 CKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKP 606



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N +CKN +I  A+ +  +M  K + P   ++N +     E    ++AF L ++M+  G
Sbjct: 474 IVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSG 533

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY + I GLCK   I E+ EL  +LR      D+ +Y+ LI   C     + AL
Sbjct: 534 VPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRAL 593

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  +     TY ++   L   G++ +  +L+  M +  V P    +  ++  +
Sbjct: 594 ELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAY 653

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +  E SKV  L  +M +K +
Sbjct: 654 AKCGEESKVEALRKEMSDKGI 674



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 103/220 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK+ +I  A  +   +++ G+    VI+NTL  G  +I  +E AF +F +M+  
Sbjct: 333 ILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSR 392

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I+GL K   I E+ +L   +        ++ ++ LID   ++G+LE  
Sbjct: 393 LIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKC 452

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  +VV+Y  +++    +G++ +A  +  DM    V P    +  +I  
Sbjct: 453 FIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDA 512

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +I      +   L  KMK   V P     ++++  L K  
Sbjct: 513 YIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQS 552



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ Y +    + A  L  +M S G+ P +V +N L  GL +  Q+  A +L D ++  G
Sbjct: 509 IIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYG 568

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  +Y   I   C       ++EL + +     +   + Y  L   L  +GR+    
Sbjct: 569 LAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEME 628

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            L+  +    +V     Y+IM+      G+  K   L  +M +  +A
Sbjct: 629 NLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGIA 675



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G CK  +I  A  L   + + G+ PDV+ +NTL          +RA +L  EM + 
Sbjct: 543 LLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKC 602

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSG 115
           G+    RTY +    L   G + E   L++ +    ++ C      Y+ ++D   K G
Sbjct: 603 GIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCS---GIYNIMVDAYAKCG 657



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADVVTYSIMIHGLY 147
           F  L   +   D   ++  +     +G L+ A+ +   +   G    +  +Y+++I GL+
Sbjct: 140 FELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLW 199

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G    A  LF +M E AV PN IT+ T+I G I+  +      L  +M    + P+  
Sbjct: 200 KAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVI 259

Query: 208 IVSIVVDLLAK 218
             ++++  L +
Sbjct: 260 TYNVLLSGLCR 270


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   +E AL    + ++ G +PD + +NT   GL +   V  A K+ D M ++
Sbjct: 260 VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQE 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I ++ LCKNG + E+  +   +    C  DI  ++ LI  LC   RLE A
Sbjct: 320 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEA 379

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    L  DV T++I+I+ L   G    A  LF +M+ +   P+ +T+ TLI  
Sbjct: 380 LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDN 439

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + +  K ++LL +M+           + ++D L K
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 114/229 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  + + AL L+ EM S G  PD V +NTL   L  + ++ +A  L  EM+  
Sbjct: 400 ILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESA 459

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T TY   IDGLCK   I E+ E+F  + +     +   ++ LIDGLCK  R++ A
Sbjct: 460 GCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDA 519

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L  + +TY+ ++      G + KA D+   M  N    +V+T+GTLI+G
Sbjct: 520 NQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLING 579

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +       ++LL  M+ K +       + V+  L +   + +++  F
Sbjct: 580 LCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLF 628



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 108/205 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CKN ++E A  + ++M+ +G  PD+   NTL + L   +++E A  L  ++   
Sbjct: 330 IVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLK 389

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  T+ I I+ LCK G    ++ LF  ++   C  D   Y+ LID LC  G+L  A
Sbjct: 390 GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKA 449

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +         VTY+ +I GL    ++++A ++F  M+   ++ N ITF TLI G
Sbjct: 450 LDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 509

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +        +L+ +M  + + P+
Sbjct: 510 LCKDKRIDDANQLISQMISEGLQPN 534



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    +E AL+L  ++  KG+ PDV   N L   L ++   + A +LF+EM+  G
Sbjct: 366 LIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG 425

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID LC  G + ++++L + +    C      Y+ +IDGLCK  R+E A 
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAE 485

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + +T++ +I GL  D ++D A+ L   M    + PN IT+ +++  +
Sbjct: 486 EVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHY 545

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  ++L  M       D      +++ L K
Sbjct: 546 CKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCK 582



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 111/215 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   I+ AL + + ML  G  P  V  N L  G  ++ +VE A     +   +G
Sbjct: 226 LMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANG 285

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY  F++GLC+NG++  ++++   +     + D+  Y+ +++ LCK+G+LE A 
Sbjct: 286 FEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 345

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +     + D+ T++ +I  L +  ++++A DL   +    ++P+V TF  LI+  
Sbjct: 346 GILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINAL 405

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            ++ +P   + L  +MK     PD    + ++D L
Sbjct: 406 CKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNL 440



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 35/237 (14%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
            +YSEM  +GIKPDVV  NTL   L   HQV  A  + +EM   GVA D  T+T  + G 
Sbjct: 171 TVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGF 230

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL--------------- 121
            + G I  ++ +   +  + C       + LI+G CK GR+E AL               
Sbjct: 231 VEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQ 290

Query: 122 --------------ELFHSLP-RGVLV-----ADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
                          + H+L    V+V      DV TY+I+++ L  +GQ+++A  +   
Sbjct: 291 ITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 350

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M E    P++ TF TLI      N   + ++L  ++  K + PD    +I+++ L K
Sbjct: 351 MVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCK 407



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 109/216 (50%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   IE A  ++ +M  +GI  + +  NTL  GL +  +++ A +L  +M  +G
Sbjct: 471 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEG 530

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   +   CK G I ++ ++ +T+     E+D+  Y  LI+GLCK+GR ++AL
Sbjct: 531 LQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVAL 590

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    + A    Y+ +I  L+       A +LF +M E    P+  T+  +  G 
Sbjct: 591 KLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGL 650

Query: 182 IRINEP-SKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            R      +  + L +M +K  +P+ S   ++ + L
Sbjct: 651 CRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGL 686



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----YSCLI 108
           L  EM+R+G          F++   +    V++V+L   L  L     IQA    Y+ L+
Sbjct: 100 LVTEMRREGHQVRVGVVHSFLESYARQQLFVDAVDL--VLNQLDPLFGIQADTVVYNHLL 157

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + L +  ++++   ++  +    +  DVVT++ ++  L    Q+  A  +  +M  + VA
Sbjct: 158 NVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVA 217

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           P+  TF TL+ GF+        + +  +M E    P    V+++++   K
Sbjct: 218 PDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCK 267


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+N  I+  L L+ EMLSKG+KP  + +  +  GLF   +   A K+  EM   G
Sbjct: 584 LIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T  I + GLC+N    E++ +F+ L  +  + +I   + +ID + K  + E A 
Sbjct: 644 TTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAK 703

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF S+    LV +  TY +MI  L  +G +++A ++F  ME++  AP+      +I   
Sbjct: 704 ELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVL 763

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E  K    + K+  K +  +AS VS+++ L ++
Sbjct: 764 LEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSR 800



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G+C +  +  A  L SEM+S+GI +P++V  N++   L +  +V  A  +FD +   
Sbjct: 478 LIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHI 537

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   IDG    G I ++  +   +     E D+ +Y+ LIDG C++GR++  
Sbjct: 538 GERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDG 597

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    +TY I++HGL+NDG+   A  +  +M E+    ++ T G ++ G
Sbjct: 598 LILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   + I +  K+   NV  + +I++ ++D + K
Sbjct: 658 LCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYK 695



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 37/249 (14%)

Query: 7   CKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           C++   + AL+L   M+ K  G  P+VV +NT+  GLF   +V +A  LF EM + GV  
Sbjct: 201 CEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVP 260

Query: 65  DTRTYTIFIDGLCK------------------------------NGYIV-----ESVELF 89
           D  TYT  ID LCK                              +GY +     E+  +F
Sbjct: 261 DVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMF 320

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           R +       +I   +  +  LCK G+ + A E F S+       ++VTYS+++HG   +
Sbjct: 321 REMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATE 380

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G      +LF  ME N +  +   F  +I  + +     + + +  +M+E+ V+PDA   
Sbjct: 381 GCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTY 440

Query: 210 SIVVDLLAK 218
            IV+   ++
Sbjct: 441 GIVIAAFSR 449



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 115/230 (50%), Gaps = 1/230 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I  + +   +  A++ +++M++ G+KP+ +++++L  G      + +A +L  EM   
Sbjct: 442 IVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSR 501

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+   +   +   I+ LCK G +VE+ ++F  +  +    D+  ++ LIDG    G++E 
Sbjct: 502 GIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEK 561

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +  ++    +  DVV+Y+ +I G   +G++D    LF +M    V P  IT+G ++H
Sbjct: 562 AFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILH 621

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           G           ++ H+M E     D S   I++  L +N     ++  F
Sbjct: 622 GLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMF 671



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 3/208 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF-DEMQR 59
           IL++  C+ +       L+   L  G+K DV++ + L   L+   + +    L    M  
Sbjct: 124 ILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPE 183

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRL 117
            GV  DT +Y   +  LC++     +++L  T+  +   C  ++  Y+ +I GL + G +
Sbjct: 184 LGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEV 243

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A  LFH + +  +V DVVTY+ +I  L     MDKA  +   M  N   PN +T+  +
Sbjct: 244 SKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCM 303

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPD 205
           IHG+    +  +   +  +M  + +MP+
Sbjct: 304 IHGYSISGQWKETAGMFREMTSQGLMPN 331



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + ++ A  +  +M+S G +P+ V +N +  G     Q +    +F EM   G
Sbjct: 268 IIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T   ++  LCK+G   E+ E F ++     + ++  YS L+ G    G     L
Sbjct: 328 LMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDML 387

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+S+    +VAD   ++I+I      G MD+   +F  M+E  V P+  T+G +I  F
Sbjct: 388 NLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAF 447

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R+   +  ++  ++M    + P+ 
Sbjct: 448 SRMGRLADAMDKFNQMIAMGLKPEG 472



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GY         LNL++ M   GI  D  + N +     +   ++    +F +MQ  
Sbjct: 372 VLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQ 431

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY I I    + G + ++++ F  +  +  + +   Y  LI G C  G L  A
Sbjct: 432 GVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKA 491

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL    + RG+   ++V ++ +I+ L  +G++ +AHD+F  +      P+VITF +LI 
Sbjct: 492 KELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLID 551

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G+  + +  K   +L  M    + PD    + ++D   +N
Sbjct: 552 GYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRN 591



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY  + + +    ++ EM S+G+ P++V  N+    L +  + + A + FD M   G
Sbjct: 303 MIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKG 362

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY++ + G    G  V+ + LF ++       D + ++ +ID   K G ++  +
Sbjct: 363 HKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETM 422

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    ++ D  TY I+I      G++  A D F  M    + P  I + +LI GF
Sbjct: 423 LIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGF 482

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
                  K  EL+ +M  + + P  +IV
Sbjct: 483 CMHGNLVKAKELVSEMMSRGI-PRPNIV 509



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 2/198 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--QRDGVAADTRTYTIFIDG 75
           L   M   G++PD + +NT+   L E  + +RA  L   M  +  G + +  TY   I G
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + G + ++  LF  +       D+  Y+ +ID LCK+  ++ A  +   +       +
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
            VTY+ MIHG    GQ  +   +F +M    + PN++T  + +    +  +  +  E   
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 196 KMKEKNVMPDASIVSIVV 213
            M  K   P+    S+++
Sbjct: 357 SMAAKGHKPNLVTYSVLL 374



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 56/226 (24%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGL--------CKNGYIVESVELFRTLRILKC 97
             E A  LFDE+ R  +    R+   F   L        C++G  + +V LF   RI + 
Sbjct: 52  STEDAHHLFDELLRQTIPVPERSLNGFFTALARAPSSAACRDGPSL-AVALFN--RICRE 108

Query: 98  EL-------DIQAYSCLIDGLCKSGRLEIALELF-------------------------- 124
           E         +  Y+ L+D  C++ R  +   LF                          
Sbjct: 109 EARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAK 168

Query: 125 ----------HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVI 172
                     H +P   +  D ++Y+ ++  L  D +  +A DL   M  +    +PNV+
Sbjct: 169 RSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVV 228

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T+ T+IHG  R  E SK   L H+M ++ V+PD    + ++D L K
Sbjct: 229 TYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCK 274



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 52/97 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C+N   + A+ ++ ++ +  +K ++ I NT+   ++++ + E A +LFD +   
Sbjct: 653 IILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISAT 712

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC 97
           G+  +  TY + I  L K G + E+  +F  +    C
Sbjct: 713 GLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGC 749


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LINGY  +   E A +L Y  M+  G +PD    N +  GL +   +  A +  DEM + 
Sbjct: 342 LINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKK 401

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYTI IDG CK G+  E+ ++  ++      L+   Y+CLI  LCK G+++ A
Sbjct: 402 GFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDA 461

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+++  +       D+ T++ +I+GL  + +M++A  L+ DM    V  N +T+ TLIH 
Sbjct: 462 LQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHA 521

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F+R+    +  +L+ +M+ +    D    + ++  L K
Sbjct: 522 FLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCK 559



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 109/205 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK+ +I+ AL +Y EM SKG KPD+   N+L  GL +  ++E A  L+ +M  +G
Sbjct: 448 LIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEG 507

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+T TY   I    +   I ++ +L   +R   C LD   Y+ LI  LCK+G  E  L
Sbjct: 508 VIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCL 567

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +   + + +I+I+     G+++ A     DM +  + P+++T+ +LI+G 
Sbjct: 568 GLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGL 627

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            ++    + + L + ++ K + PDA
Sbjct: 628 CKMGRFQEALNLFNGLQAKGIHPDA 652



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CKN ++E AL LY +ML +G+  + V +NTL      +  +++A KL  EM+  G
Sbjct: 483 LIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRG 542

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I  LCK G   + + L   +   +    I + + LI+  C++G++  AL
Sbjct: 543 CPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDAL 602

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    + +  L  D+VTY+ +I+GL   G+  +A +LF  ++   + P+ +T+ TLI  +
Sbjct: 603 QFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRY 662

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                 +   +LL K      +P+    SI+++   KN
Sbjct: 663 CYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVKN 700



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +  AL    EM+ KG +P+V+ +  L  G  +    E A K+ + M   
Sbjct: 377 IMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAK 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +T  Y   I  LCK+G I ++++++  +    C+ DI  ++ LI GLCK+ ++E A
Sbjct: 437 GLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEA 496

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L+  +    ++A+ VTY+ +IH       + +A  L  +M       + IT+  LI  
Sbjct: 497 LGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKA 556

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     K + L+ +M  + + P  +  +I+++   +
Sbjct: 557 LCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCR 594



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQRD 60
           L++G C+  +++ A      MLSK   P+ V++NTL  G     + E A  L +  M   
Sbjct: 311 LMHGLCRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIA 366

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+ I IDGLCK GY+V ++E    +     E ++  Y+ LIDG CK G  E A
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++ +S+    L  + V Y+ +I  L  DG++  A  ++ +M      P++ TF +LI+G
Sbjct: 427 SKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYG 486

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
             + ++  + + L   M  + V+ +    + ++    + E+
Sbjct: 487 LCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLEL 527



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 9/219 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C     + A N++ +MLS+GI P V     +      +++V+ A  L  +M + 
Sbjct: 174 ILVAGNCP----KVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKH 229

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++  Y + I  L +N  + E+++L   + ++ CE D+Q ++ +I GLCK+GR+  A
Sbjct: 230 GCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEA 289

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +      AD +    ++HGL   G++D+A  +   +      PN + + TLI+G
Sbjct: 290 AKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPN----PNTVLYNTLING 345

Query: 181 FIRINEPSKVIELLHK-MKEKNVMPDASIVSIVVDLLAK 218
           ++      +  +LL+K M      PDA   +I++D L K
Sbjct: 346 YVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCK 384



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+  ++  AL    +M+ +G+ PD+V +N+L  GL ++ + + A  LF+ +Q  
Sbjct: 587 ILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAK 646

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           G+  D  TY   I   C  G   ++ +L
Sbjct: 647 GIHPDAVTYNTLISRYCYEGLFNDACQL 674



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDG 110
           KL  +M+ +G       + + +    K G   ++  L   +  + C E   ++Y+ +++ 
Sbjct: 115 KLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEI 174

Query: 111 LCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           L      ++A  +F+  L RG+    V T+ +++       ++D A  L  DM ++   P
Sbjct: 175 LVAGNCPKVAPNVFYDMLSRGI-SPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVP 233

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           N I +  LIH     N  ++ ++LL +M      PD    + V+  L K
Sbjct: 234 NSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCK 282



 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A ++F DM    ++P V TFG ++  F  +NE      LL  M +   +P++ I  +++ 
Sbjct: 184 APNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIH 243

Query: 215 LLAKN 219
            L++N
Sbjct: 244 ALSEN 248


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGYCKN  IE A +L+ +M SKG+ P +VI++T+  GLF+  ++  A +L+  M + G
Sbjct: 527 IINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCG 586

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY I + GLC+N    +++ +F  L ++   L  + ++ +ID L K GR + A 
Sbjct: 587 IKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAK 646

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    LV +VVTY +M+  L   G +++  DLFL +E+N    +      L+   
Sbjct: 647 DLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKL 706

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA--KNEISLNSLP 227
            +  E  K    L K+ E N   +AS    +V L++  K +  +NS+P
Sbjct: 707 PQKGEVRKAGVYLSKIDENNFSLEASTAESLVFLVSSGKYDQHINSIP 754



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL+L++ M     + D+  ++ +         ++ AF     + R G  A   T++  + 
Sbjct: 84  ALSLFNRM----PRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLK 139

Query: 75  GLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL----PR 129
           GLC +    +++++  R +  L C  +  +Y+ L+ GLC   R + AL L H++     R
Sbjct: 140 GLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTR 199

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
           G    DVV+Y+ +I+GL  +GQ+DKA+ LF +M +  ++PN IT+  L+HG+    +P +
Sbjct: 200 GGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKE 259

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESNV 243
            I +  KM    V PD    + ++  L KN  S+ +   F    ++    +S++
Sbjct: 260 AIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSI 313



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK----GIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           IL+ G C     + AL+L   M++     G  PDVV + T+  GL    Q+++A+ LFDE
Sbjct: 172 ILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDE 231

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M   G++ +  TY   + G C +G   E++ +FR +     E D+  Y+ L+  LCK+GR
Sbjct: 232 MLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGR 291

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
              A ++F S+ +     D   Y  ++HG   +G + + H L   M  N   P+   F  
Sbjct: 292 SMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNI 351

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           LI  + +     + +    KM+++ + P+      V+D L +
Sbjct: 352 LIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCR 393



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   + + A  L  EM+ +GI P+ +  NTL   L +   V RA  +FD M R  
Sbjct: 422 LIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVD 481

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TYT  IDG C +G + E+ +L   + +   + +   Y+ +I+G CK+GR+E A 
Sbjct: 482 VQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDAC 541

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +   +V YS ++HGL+   ++  A +L+L M +  +   + T+  ++ G 
Sbjct: 542 SLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGL 601

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N     + + H +   +        +I++D L K 
Sbjct: 602 CQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKG 639



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC + + + A+ ++ +M   G++PDVV +NTL + L +  +   A K+FD M + G
Sbjct: 247 LLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+  Y   + G    GY+V+  +L   +     + D   ++ LI    K G ++ A+
Sbjct: 307 HKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAM 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + +  L  ++VTY  ++  L   G++D A   F  +    + PN + F TLIHG 
Sbjct: 367 LAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGL 426

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++  K  EL  +M  + + P+    + +++ L K
Sbjct: 427 CACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCK 463



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 117/228 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  C+  +++ A++ +  ++S+G+ P+ V+  TL  GL    + ++A +L  EM   G
Sbjct: 387 VMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRG 446

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  +   ++ LCK G +  +  +F  +  +  + D+  Y+ LIDG C  G+++ A 
Sbjct: 447 ICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEAT 506

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  + VTY+ +I+G   +G+++ A  LF  M    V P ++ + T++HG 
Sbjct: 507 KLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGL 566

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +    +   EL   M +  +       +I++  L +N  + ++L  F
Sbjct: 567 FQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMF 614



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 5/239 (2%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           L+ G C +K    A+++    M + G  P+   +N L  GL + ++ ++A  L   M   
Sbjct: 137 LLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMAD 196

Query: 58  -QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
             R G   D  +YT  I+GL + G + ++  LF  +       +   Y+CL+ G C SG+
Sbjct: 197 DTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGK 256

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            + A+ +F  + R  +  DVVTY+ ++  L  +G+  +A  +F  M +    P+   +GT
Sbjct: 257 PKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGT 316

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           L+HG+       ++ +LL  M      PD  I +I++   AK+ +   ++ +F+   +Q
Sbjct: 317 LLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQ 375



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  Y K+  ++ A+  +S+M  +G+ P++V + T+   L  + +V+ A   FD +  +
Sbjct: 351 ILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISE 410

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   +   I GLC      ++ EL   +       +   ++ L++ LCK G +  A
Sbjct: 411 GLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRA 470

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  + R  +  DV+TY+ +I G   DG++D+A  L   M  + V PN +T+ T+I+G
Sbjct: 471 KNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIING 530

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +         L  +M  K V P   I S ++
Sbjct: 531 YCKNGRIEDACSLFRQMASKGVNPGIVIYSTIL 563



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 50  AFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           A  LFDE+ +RD       T +IF      +    ES  +  +L       D+  YS +I
Sbjct: 51  AHHLFDELLRRD-------TTSIFDLNSALSAVARESPAVALSLFNRMPRADLCTYSIVI 103

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEENAV 167
               ++G L++A      + R    A  +T+S ++ GL +D +   A D+ L  M     
Sbjct: 104 GCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGC 163

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM----PD-ASIVSIVVDLLAKNEI 221
            PN  ++  L+ G    N   + + LLH M   +      PD  S  +++  LL + ++
Sbjct: 164 TPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQL 222


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  +++ A+++ + M+  G KP+  ++N L  GL    + E A ++F E+    
Sbjct: 135 MISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCK     E+ +L + +        +  YS LI GLC+  ++E+AL
Sbjct: 195 CSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+ + A +L+ DM     APN++T+ TL+ GF
Sbjct: 255 QLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEISL 223
            +  +    + +  ++    ++PD    +I +  L A N IS+
Sbjct: 315 YKGGDTRNALVIWARILRNGLLPDIISYNITLKGLCACNRISV 357



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ K   I+   +L+  M  +G + +V   NT+  GLF   +V+  F +++ M+  G
Sbjct: 31  MLNGFFKAGRIKNCFDLWELMGREGSR-NVASFNTMMRGLFNNGEVDEVFSIWELMKESG 89

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNGY  +S+ +    +     LD  AYS +I GLCK G+L+ A+
Sbjct: 90  FVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAV 149

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +       +   Y+ +I+GL    + + A  +F ++     +P ++T+ TLI+G 
Sbjct: 150 SVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGL 209

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    ++  +L+ +M EK   P     S+++  L ++
Sbjct: 210 CKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQD 247



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 102/203 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING     + E A+ ++ E+ ++   P +V +NTL  GL +  +   A+ L  EM   G
Sbjct: 170 LINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY++ I GLC++  +  +++L+  +     + D+Q ++ LI GLC  G+ E A 
Sbjct: 230 WNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHAS 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +       ++VTY+ ++ G Y  G    A  ++  +  N + P++I++   + G 
Sbjct: 290 ELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRNGLLPDIISYNITLKGL 349

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
              N  S  I  L+    KN++P
Sbjct: 350 CACNRISVAILFLNDAVTKNIVP 372



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK +    A +L  EML KG  P V+ ++ L  GL + H+VE A +L++++   G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + + I I GLC  G    + EL+  +    C  ++  Y+ L++G  K G    AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNAL 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            ++  + R  L+ D+++Y+I + GL    ++  A     D     + P VIT
Sbjct: 325 VIWARILRNGLLPDIISYNITLKGLCACNRISVAILFLNDAVTKNIVPTVIT 376



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 1/214 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C++  I  A  +Y EM    I PD V++N +  G F+  +++  F L++ M R+G + + 
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREG-SRNV 59

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            ++   + GL  NG + E   ++  ++      D   Y  L+ G CK+G    +L +   
Sbjct: 60  ASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEI 119

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
             +     D   YS MI GL   G++DKA  +   M E+   PN   +  LI+G +  ++
Sbjct: 120 AKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASK 179

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               I +  ++  ++  P     + +++ L K E
Sbjct: 180 FEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGE 213



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           C+SG +  A  ++  +    +  D V Y+ M++G +  G++    DL+  M     + NV
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREG-SRNV 59

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            +F T++ G     E  +V  +   MKE   + D++   I+V    KN  +  SL
Sbjct: 60  ASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSL 114



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C   + E A  LY +M      P++V +NTL  G ++      A  ++  + R+
Sbjct: 274 ILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRN 333

Query: 61  GVAADTRTYTIFIDGLC 77
           G+  D  +Y I + GLC
Sbjct: 334 GLLPDIISYNITLKGLC 350


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C++ ++E A+NL   M  KG+KPD   ++ L  G     +++ A +  + M  D
Sbjct: 318 ILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISD 377

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   + GLC+ G   +++E+F  L  + C  ++ +Y+ L   L  SG    A
Sbjct: 378 GCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRA 437

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   L    +  D +TY+ +I  L  DG +D+A +L +DM+     PNV+++  ++ G
Sbjct: 438 LEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLG 497

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             ++N  +  IE+L  M EK   P+ +   ++++
Sbjct: 498 LCKVNRANDAIEVLAAMTEKGCQPNETTYILLIE 531



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G CK   ++ A  L   + S+G KPD++ +N L   L    +     KL  EM   G
Sbjct: 249 IIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIG 308

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T++I I  LC++G + E+V L R+++    + D   Y  LI G C+ GRL++A 
Sbjct: 309 CKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLAT 368

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +     + D+V Y+ ++ GL   G+ D+A ++F  ++E    PNV ++ TL    
Sbjct: 369 EFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSAL 428

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +  + +E++ K+  + + PD    + ++  L ++
Sbjct: 429 WSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRD 466



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI     +  I+ A+ L  EMLSKG++PD + +N +  G+ +   V++AF+L   +   
Sbjct: 213 ILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSR 272

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I +  L   G   E  +L   +  + C+ ++  +S LI  LC+ G++E A
Sbjct: 273 GCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEA 332

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L  S+    L  D   Y  +I G   +G++D A +    M  +   P+++ + T++ G
Sbjct: 333 VNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAG 392

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
             R  +  + +E+  K+ E    P+ S
Sbjct: 393 LCRTGKADQALEVFEKLDEVGCPPNVS 419



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 103/205 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K  ++E A  +   M S+G  PDVV +N +        +++ A ++F+E+ +D 
Sbjct: 144 LISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN 203

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYTI I+    +G I  +++L   +     E D   Y+ +I G+CK   ++ A 
Sbjct: 204 CEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAF 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  SL       D++TY+I++  L + G+  +   L  +M      PNV+T   LI   
Sbjct: 264 ELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTL 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R  +  + + LL  MKEK + PDA
Sbjct: 324 CRDGKVEEAVNLLRSMKEKGLKPDA 348



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 99/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I  +C   +++ AL ++ E+L    +P V+ +  L         ++ A KL DEM   
Sbjct: 178 IMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSK 237

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  DT TY   I G+CK   + ++ EL R+L    C+ DI  Y+ L+  L   G+    
Sbjct: 238 GLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEG 297

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       +VVT+SI+I  L  DG++++A +L   M+E  + P+   +  LI G
Sbjct: 298 EKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAG 357

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F R        E L  M     +PD
Sbjct: 358 FCREGRLDLATEFLEYMISDGCLPD 382



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 2/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  C+  +   +L     M+ KG  PDV++   L  G F    + +A ++ + ++R G
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   I G  K   +  +  +   ++      D+  Y+ +I   C  G+L++AL
Sbjct: 135 -KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLAL 193

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L +      V+TY+I+I     DG +D A  L  +M    + P+ +T+  +I G 
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGM 253

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
            +     K  ELL  +  +   PD    +I++  LL++ + S
Sbjct: 254 CKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWS 295



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 99/206 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+   ++ A      M+S G  PD+V +NT+  GL    + ++A ++F+++   G
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +Y      L  +G    ++E+   L     + D   Y+ LI  LC+ G ++ A+
Sbjct: 414 CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAI 473

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +  G    +VV+Y+I++ GL    + + A ++   M E    PN  T+  LI G 
Sbjct: 474 ELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGI 533

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                 ++ +EL + +   N + + S
Sbjct: 534 GFSGLRAEAMELANSLHGMNAISEDS 559


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++  A +L+ EM++ G+KP+VVI+ +L  G  +  ++  AF+L+ EM   G
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T T+T  I GLC    + E+ +LF  +       +   Y+ LI+G CK G    A 
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--------EENAVAPNVIT 173
           EL   +    LV D  TY  +I GL + G++ +A +   D+        E     PNV+T
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVT 610

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +  LI+G  +I    K   L  +M   N +P+ +  +  +D L 
Sbjct: 611 YTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLT 654



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K   I  A +L +++   G+ P + ++N L   + +  +++ A  LF+ M   G
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+I ID  CK G +  ++     +  +  +  +  YS LI G CK G+L  A 
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  +VV Y+ +I G   +G++  A  L+ +M    ++PN  TF  LI G 
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              N  ++  +L  +M E NV+P+    +++++
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG  + ++   AL+L+ E++S G++PDV ++  +   L E+    RA ++   M+  G
Sbjct: 186 VLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSG 245

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY +FI GLCKN  + E+VE+   L       D+  Y  L+ GLCK    E   
Sbjct: 246 CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGE 305

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ + +     V      S ++ GL   G +  A DL   +++  VAP++  +  LI+  
Sbjct: 306 EMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSM 365

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +   L + M  K + P+    SI++D   K
Sbjct: 366 CKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCK 402



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 105/205 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK+ +++ A +L++ M  KG+ P+ V ++ L     +  +++ A     +M   G
Sbjct: 361 LINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVG 420

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A    Y+  I G CK G +  +  LF  +     + ++  Y+ LI G CK G L  A 
Sbjct: 421 IKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAF 480

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+H +    +  +  T++ +I GL +  +M +A+ LF +M E  V PN +T+  LI G 
Sbjct: 481 RLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGH 540

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +     +  ELL +M EK ++PD 
Sbjct: 541 CKEGNTVRAFELLDEMVEKGLVPDT 565



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 20/248 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK  +++ AL+   +M   GIK  V  +++L  G  ++ ++  A  LFDEM  +
Sbjct: 395 ILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIAN 454

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   YT  I G CK G +  +  L+  +       +   ++ LI GLC + R+  A
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    ++ + VTY+++I G   +G   +A +L  +M E  + P+  T+  LI G
Sbjct: 515 NKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISG 574

Query: 181 FI---RINEPSKVIELLHKMKEK-----NVMPDASIVSIVVD------------LLAKNE 220
                R++E  + +  L   ++K       +P+    + +++            LL +  
Sbjct: 575 LCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREM 634

Query: 221 ISLNSLPS 228
           ++ NSLP+
Sbjct: 635 LASNSLPN 642



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 36/258 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I G CKN+ +  A+ + + +  KG++ DV  + TL +GL ++ + E   ++ +EM   
Sbjct: 255 VFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEF 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G        +  +DGL K G I  + +L   ++       +  Y+ LI+ +CK G+L+ A
Sbjct: 315 GFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD--------------------------- 153
             LF+++    L  + VTYSI+I      G++D                           
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 154 --------KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                    A  LF +M  N + PNV+ + +LI G+ +  E      L H+M  K + P+
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494

Query: 206 A-SIVSIVVDLLAKNEIS 222
             +  +++  L   N ++
Sbjct: 495 TYTFTALISGLCHANRMA 512



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   ++ A  L  EML+    P+   +      L     +E+A +L D +  +G
Sbjct: 614 LINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL-EG 672

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+T TY I I G CK G I E+ E+   +       D  +YS +I   C+ G L+ A+
Sbjct: 673 FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAI 732

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L+ S L RGV   D V Y+ +I+G    G++ KA +L  DM    V PN  T+ +LIHG
Sbjct: 733 KLWESMLNRGV-NPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 791



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y +N+     L +   M+  GI P +   + +  GL  I Q   A  LFDE+   
Sbjct: 150 LLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSS 209

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  +  LC+    + + E+   +    C+L +  Y+  I GLCK+ R+  A
Sbjct: 210 GLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEA 269

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+ + L    L ADV TY  ++ GL    + +   ++  +M E    P+      L+ G
Sbjct: 270 VEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDG 329

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +        +L++K+K+  V P   + + +++ + K+
Sbjct: 330 LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKD 368



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 42/249 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G+CK      A  L  EM+ KG+ PD   +  L  GL    +V  A +  +++Q +
Sbjct: 535 VLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGE 594

Query: 61  --------GVAADTRTYTIFIDGLCKNGYIVESVELFRTL---------RILKCELD--- 100
                   G   +  TYT  I+GLCK G + ++  L R +             C LD   
Sbjct: 595 QQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLT 654

Query: 101 --------IQ--------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138
                   IQ               Y+ LI G CK GR++ A E+  ++    +  D ++
Sbjct: 655 SEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCIS 714

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           YS +I+     G + +A  L+  M    V P+ + +  LI+G     E +K  EL   M 
Sbjct: 715 YSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM 774

Query: 199 EKNVMPDAS 207
            + V P+ +
Sbjct: 775 RRGVKPNRA 783



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  YC+  +++ A+ L+  ML++G+ PD V +N L  G     ++ +AF+L D+M R G
Sbjct: 718 IIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 777

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF 89
           V  +  TY   I G C    +  + + F
Sbjct: 778 VKPNRATYNSLIHGTCLMSSVSSTADYF 805



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           IE A+ L+ ++L +G   + V +N L  G  ++ +++ A ++   M   G++ D  +Y+ 
Sbjct: 659 IEKAIQLH-DVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYST 717

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I   C+ G + E+++L+ ++       D  AY+ LI G C +G L  A EL   + R  
Sbjct: 718 IIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 777

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           +  +  TY+ +IHG      +    D F
Sbjct: 778 VKPNRATYNSLIHGTCLMSSVSSTADYF 805



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+CK   I+ A  +   M+  GI PD + ++T+         ++ A KL++ M   
Sbjct: 682 ILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR 741

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           GV  DT  Y   I G C  G + ++ EL   +     + +   Y+ LI G C
Sbjct: 742 GVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 793


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCKN  I+ AL ++ +ML KG+KP  V+++ +  GLF+  +   A K+F EM   G
Sbjct: 528 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 587

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY + + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 588 TTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAK 647

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV ++ TYS+MI  L  +   ++A +LF+ +E++  A +      ++   
Sbjct: 648 ELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRML 707

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E +K    L  + E N+  +AS +S++  L ++
Sbjct: 708 LNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSR 744



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K+ E++ A  L+ EM+ +G+ P ++I N++   L ++ ++++A  +  +M   G
Sbjct: 140 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 199

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY++ IDGLCK+  + ++  +   +       +   Y+ LI G   SG    ++
Sbjct: 200 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 259

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    ++  V   +  IH L+  G+ ++A  +F  M      P++I++ T++HG+
Sbjct: 260 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 319

Query: 182 IRINEP--SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +   + V  + + M  K + P+  + +I+++  A+
Sbjct: 320 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYAR 358



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           N+++ ML+KGI P+  + N L         +++A  +F++MQ  G+  DT T+   I  L
Sbjct: 332 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 391

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVAD 135
           C+ G + +++  F  +  +        Y CLI G C  G L  A EL    + + +    
Sbjct: 392 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 451

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V  +S +I+ L  +G++ +  D+   M +    PNV+TF +L+ G+  +    +   LL 
Sbjct: 452 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 511

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
            M    + P+  I   +VD   KN
Sbjct: 512 AMASIGIEPNCYIYGTLVDGYCKN 535



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   M+  G +P+VV  N+L  G   +  +E AF L D M   G
Sbjct: 458 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 517

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   +DG CKNG I +++ +FR +     +     YS ++ GL ++ R   A 
Sbjct: 518 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 577

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +        + TY +++ GL  +   D+A+ L   +    V  ++ITF  +I   
Sbjct: 578 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 637

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +  EL   +    ++P+    S+++  L K E
Sbjct: 638 FKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEE 676



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH-NTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G C + E+  A  L SEM++K I P  V + +++   L +  +V     + D M + 
Sbjct: 422 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 481

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   ++G C  G + E+  L   +  +  E +   Y  L+DG CK+GR++ A
Sbjct: 482 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 541

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    +    V YSI++HGL+   +   A  +F +M E+    ++ T+G ++ G
Sbjct: 542 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 601

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             R N   +   LL K+   NV  D    +IV+  +            F V  RQE
Sbjct: 602 LCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM------------FKVGRRQE 645



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y +   ++ A+ ++ +M +KG+ PD V   T+   L  I +++ A   F+ M   
Sbjct: 351 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 410

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEI 119
           GV      Y   I G C +G +V++ EL   +         ++ +S +I+ LCK GR+  
Sbjct: 411 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 470

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             ++   + +     +VVT++ ++ G    G M++A  L   M    + PN   +GTL+ 
Sbjct: 471 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 530

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+ +       + +   M  K V P + + SI++
Sbjct: 531 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 564



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           +I+  C+   ++ AL+ ++ M+  G+ P   ++  L  G     ++ +A +L  EM  +D
Sbjct: 387 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 446

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                 + ++  I+ LCK G + E  ++   +       ++  ++ L++G C  G +E A
Sbjct: 447 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 506

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++    +  +   Y  ++ G   +G++D A  +F DM    V P  + +  ++HG
Sbjct: 507 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 566

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +    +   ++ H+M E           +V+  L +N  +
Sbjct: 567 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCT 608



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC    +E A  L   M S GI+P+  I+ TL  G  +  +++ A  +F +M   G
Sbjct: 493 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 552

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   +  Y+I + GL +      + ++F  +      + I  Y  ++ GLC++   + A 
Sbjct: 553 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 612

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  D++T++I+I  ++  G+  +A +LF  +    + PN+ T+  +I   
Sbjct: 613 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNL 672

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEIS 222
           I+     +   L   +++     D+ +++ IV  LL K E++
Sbjct: 673 IKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVA 714



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 102/215 (47%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+K ++ A  +  +M+  G +P+ + +N+L  G         + ++F +M   
Sbjct: 209 LIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 268

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV         FI  L K+G   E+  +F ++ +   + DI +YS ++ G   +    +A
Sbjct: 269 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 328

Query: 121 --LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
               +F+ +    +  +   ++I+I+     G MDKA  +F DM+   + P+ +TF T+I
Sbjct: 329 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 388

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               RI      +   + M +  V P  ++   ++
Sbjct: 389 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLI 423



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           I  Y+ LID   +  R ++ L +   L +  L  D  +YS +I+G   DG++DKAH LFL
Sbjct: 100 IHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFL 158

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +M E  V P ++   ++I    ++ E  K   ++ KM +  + PD    S+++D L K++
Sbjct: 159 EMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSK 218



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +  +N L      +H+ +    +   + ++G+  D  +Y++ I G  K+G + ++  L
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSL-IYGFVKDGEVDKAHCL 156

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  +        I   + +I  LCK   ++ A  +   +    +  D+ TYS++I GL  
Sbjct: 157 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 216

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              MDKA  +   M E    PN IT+ +LIHG+      ++ + +  +M    V+P
Sbjct: 217 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 272


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 16/229 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI----------------KPDVVIHNTLFIGLFEIH 45
           LI+GYCK+  IE A  +Y+ M                     KP+VV +  L  GL + H
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +V+ A  L + M  DG   +T  Y   IDG CK   + E+ E+F  +       ++  YS
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYS 719

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LID L K  RL++ L++   +       ++V Y+ MI GL    + D+A+ L L MEE 
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              PNV+T+  +I GF +  +  K +EL  +M  K   P+    +++++
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLIN 828



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K K++  A  L+  M++KG  P+V+ +  L  G  +   +E+A +++  M+ D 
Sbjct: 565 LIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDA 624

Query: 62  VAADTR----------------TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
              D                  TY   +DGLCK   + ++ +L  T+ +  CE +   Y 
Sbjct: 625 DIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYD 684

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK+ +L+ A E+FH +       +V TYS +I  L+ D ++D    +   M EN
Sbjct: 685 ALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLEN 744

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + APN++ +  +I G  ++ +  +  +L+  M+EK   P+    + ++D   K
Sbjct: 745 SCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGK 797



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 16/230 (6%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C    +E A  L+ EM   G+ PDV  +  L     +   +++A    DEM RDG     
Sbjct: 500 CNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTV 559

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I    K   +  + ELF  +    C  ++  Y+ LIDG CKSG +E A +++  
Sbjct: 560 VTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYAR 619

Query: 127 LPRGVLVAD----------------VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +     + D                VVTY  ++ GL    ++  A DL   M  +   PN
Sbjct: 620 MRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPN 679

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            I +  LI GF +  +  +  E+ HKM E+   P+    S ++D L K++
Sbjct: 680 TIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDK 729



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 115/217 (52%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +++ A  ++ +M+ +G  P+V  +++L   LF+  +++   K+  +M  + 
Sbjct: 686 LIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENS 745

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  IDGL K     E+ +L   +    C+ ++  Y+ +IDG  K+G+++  L
Sbjct: 746 CAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCL 805

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       + VTY+++I+     G +D+A+ L  +M++     +V ++  +I G+
Sbjct: 806 ELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY 865

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E    + LL ++++    P   +  +++D   K
Sbjct: 866 KR--EFILSLGLLEEVEKNGSAPTILLYKVLIDNFVK 900



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 1   ILINGYCKNKEIEGALNL------YSEMLSKGI---KPDVVIHNTLFIGLFEIHQVERAF 51
           ILI   C   E+ G +        Y+EMLS G    K +VV       G     + E+A+
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGF---GKFEKAY 474

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           K+  EM  +G   DT TY+  I  LC    +  +  LF+ ++      D+  Y+ LID  
Sbjct: 475 KVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF 534

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            K+G ++ A      + R      VVTY+ +IH      ++  A++LF  M      PNV
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           IT+  LI G+ +     K  ++  +M+    +PD  +
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDM 631



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 35/227 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K  + + A  L   M  KG KP+VV +  +  G  +  +V++  +LF EM   G
Sbjct: 756 MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR----------------------ILKCEL 99
            A +  TYT+ I+  C  G++ E+  L   ++                      IL   L
Sbjct: 816 CAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGL 875

Query: 100 -----------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL--VADVVTYSIMIHGL 146
                       I  Y  LID   K+GRLE+ALEL   +    +   A    Y+ +I+  
Sbjct: 876 LEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSF 935

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
               ++D A +LF DM  + V P++ TF  L+ G IR+    + ++L
Sbjct: 936 SYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV------ERAFKLFD 55
           L++ YCK+ +   A  L  +M     KP  V++N L   +    ++      E A K ++
Sbjct: 384 LVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   G   +      F   LC  G   ++ ++   +       D   YS +I  LC + 
Sbjct: 444 EMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNAS 503

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R+E A  LF  +    +V DV TY+I+I      G + +AH+   +M  +   P V+T+ 
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           TLIH +++  + S   EL   M  K   P+    + ++D   K+
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 3/213 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C+N     AL     +   G KP  + +N L        +++ A  +  EM   
Sbjct: 211 VLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSEL 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  T   F   LCK G   E++ L      +    +   Y+ +I GLC++   E A
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVP---NTILYNKMISGLCEASFFEEA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +     + +V TY I++ G  N  Q+ +   +   M      P+   F +L+H 
Sbjct: 328 MDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + + ++ S   +LL KM++    P   + +I++
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 6/226 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+    E A++  + M S    P+V  +  L  G     Q+ R  ++   M  +G
Sbjct: 314 MISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
                  +   +   CK+     + +L + +   +C+     Y+ LI  +C  G L    
Sbjct: 374 CYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPV 433

Query: 118 --EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
             E+A + ++ +     V + V        L   G+ +KA+ +  +M  N   P+  T+ 
Sbjct: 434 TFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYS 493

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +I      +       L  +MK   V+PD    +I++D  +K  I
Sbjct: 494 EVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+G CK     ++ ELF  + +     +   ++ LIDG CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +AH L  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N   D    + ++  L     S+++
Sbjct: 327 CCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDA 371



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 98/179 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD   Y+ LI GLC  GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  G  +  + + A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +I G   +G +D A +    M +     + + +  LI G 
Sbjct: 303 HLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                     ++L +M    + PDA   +++++   K 
Sbjct: 363 CXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 79/165 (47%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+G   + + D A++LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    + PN + F TLI G  +       +E+  +M  +++ PD
Sbjct: 237 EMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + JA  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 1/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ K+  + G+L ++ EML + + P+V+ +N+L  GL    ++  A  + D+M   
Sbjct: 301 ILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSA 360

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   I+G CKNG + E++++F +++        + Y+ LID  CK G+++  
Sbjct: 361 GVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDG 420

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +V DV TY+ +I GL  +G ++ A  LF D   N   P+++TF  L+ G
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF-DQLTNKGLPDLVTFHILMEG 479

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           +    E  K   LL +M +  + P
Sbjct: 480 YCSRGESRKAAMLLKEMSKMGLKP 503



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 111/212 (52%), Gaps = 2/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CKN  ++ AL+++  +  +G +P   ++N L     ++ +++  F L +EM+R+G
Sbjct: 372 LINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I GLC+NG I  + +LF  L   K   D+  +  L++G C  G    A 
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TNKGLPDLVTFHILMEGYCSRGESRKAA 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIHG 180
            L   + +  L    +TY+IM+ G   +G +  A ++   ME E  +  NV ++  L+ G
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQG 550

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + +  +      LL++M EK ++P+     IV
Sbjct: 551 YSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK---LFDEM 57
           ++IN  CK  ++  A ++  +M   G  P+VV +NTL  G  ++    + +K   +  EM
Sbjct: 228 VVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM 287

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
             + V+ +  T+ I IDG  K+  +  S+++F+ +       ++  Y+ LI+GLC  G++
Sbjct: 288 VENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKI 347

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A+ +   +    +  +++TY  +I+G   +G M +A D+F  ++     P    +  L
Sbjct: 348 NEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNML 407

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I  + ++ +      L  +M+ + ++PD    + ++  L +N
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 108/232 (46%), Gaps = 3/232 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y  N   E     +      G K   +    L + L + ++      L+ EM R 
Sbjct: 158 MLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRR 217

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK---SGRL 117
            +  +  T+ + I+ LCK G + ++ ++   +++     ++ +Y+ LIDG CK   +G++
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKM 277

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A  +   +    +  ++ T++I+I G + D  +  +  +F +M +  V PNVIT+ +L
Sbjct: 278 YKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSL 337

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           I+G     + ++ I +  KM    V P+      +++   KN +   +L  F
Sbjct: 338 INGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMF 389



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+N  IE A  L+ ++ +KG+ PD+V  + L  G     +  +A  L  EM + G
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMG 500

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     TY I + G CK G +  +  +   + +  +  +++ +Y+ L+ G  + G+LE A
Sbjct: 501 LKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDA 560

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
             L + +    LV + +TY I+   + + G
Sbjct: 561 NMLLNEMLEKGLVPNRITYEIVKEEMVDKG 590



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 8/190 (4%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           ++H +  A  + D +  + + AD     + +     N       E F+       +L   
Sbjct: 135 QVHSIFHAISMCDNVCVNSIIAD-----MLVLAYANNSRFELGFEAFKRSGYYGYKLSAM 189

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +   L+  L K  R      L+  + R  +  +V T++++I+ L   G+M+KA D+  DM
Sbjct: 190 SCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDM 249

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +    +PNV+++ TLI G+ ++    K+ +   +L +M E  V P+ +  +I++D   K+
Sbjct: 250 KVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKD 309

Query: 220 EISLNSLPSF 229
           +    SL  F
Sbjct: 310 DNLPGSLKVF 319



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 87/179 (48%), Gaps = 3/179 (1%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           + +I + L +      + E  F+ F      G      +    +  L K     +   L+
Sbjct: 152 NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLY 211

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG---L 146
           + +   K + ++  ++ +I+ LCK+G++  A ++   +       +VV+Y+ +I G   L
Sbjct: 212 KEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKL 271

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             +G+M KA  +  +M EN V+PN+ TF  LI GF + +     +++  +M +++V+P+
Sbjct: 272 GGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPN 330



 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I++ GYCK   ++ A N+ ++M   + ++ +V  +N L  G  +  ++E A  L +EM  
Sbjct: 510 IMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLE 569

Query: 60  DGVAADTRTYTIFIDGLCKNGYI 82
            G+  +  TY I  + +   G++
Sbjct: 570 KGLVPNRITYEIVKEEMVDKGFV 592


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 117/206 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G+C+   IE AL L  ++LS G + +V++++ L   L +  QV+ A +L  EM+ +
Sbjct: 296 VLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEAN 355

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY+I I GLCK G + ++++L++ +   +   +  A+S ++ GLC+ G L  A
Sbjct: 356 NLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDA 415

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F SL    L  DV  Y+IMI G    G +++A  L+  + + A+ P+++TF +LI+G
Sbjct: 416 RMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYG 475

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
           F +  +  +   LL  +K   + P A
Sbjct: 476 FCKNRKVVEARRLLESIKLHGLEPSA 501



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK  +++ A+ LY EM    I P+   H+ +  GL E   +  A   FD +   
Sbjct: 366 ILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMS 425

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y I IDG  K G + E+V L++ LR       I  ++ LI G CK+ ++  A
Sbjct: 426 NLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEA 485

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  S+    L    VTY+ +++    +G ++K H+L L+M    + P V+T+  +I G
Sbjct: 486 RRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKG 545

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  + ++LL  M+ K + PD    + ++    K
Sbjct: 546 LCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCK 583



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C+   +  A   +  ++   ++PDV ++N +  G  ++  VE A +L+  ++   
Sbjct: 402 ILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKA 461

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T+   I G CKN  +VE+  L  ++++   E     Y+ L++  C+ G +    
Sbjct: 462 ITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLH 521

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +   VVTY+++I GL    +++++  L  DM    +AP+ IT+ T+I  F
Sbjct: 522 ELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCF 581

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  ELL  M   N+ P  +  ++++D L +
Sbjct: 582 CKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCR 618



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 100/202 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+GY K  ++E A+ LY  +  K I P +V  N+L  G  +  +V  A +L + ++  
Sbjct: 436 IMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLH 495

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT  ++  C+ G I +  EL   + +   E  +  Y+ +I GLCK  +LE +
Sbjct: 496 GLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEES 555

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +    L  D +TY+ +I        M KA +L  DM  + + P   T+  LI G
Sbjct: 556 VQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDG 615

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
             R  +      +L  ++++N+
Sbjct: 616 LCRYGDVEDADRVLVSLQDRNI 637



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 103/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK +++E ++ L  +M +KG+ PD + +NT+     +   + +AF+L D+M   
Sbjct: 541 VVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIH 600

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY + IDGLC+ G + ++  +  +L+     L   AY+ +I   C  G  + A
Sbjct: 601 NLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRA 660

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++FH +        +  YS +I+ L     +++A   F  M  + V+P+   F  +++ 
Sbjct: 661 VKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNA 720

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F R      V ELL  M +  ++ D
Sbjct: 721 FHRAGHVHSVFELLAVMIKFGLLHD 745



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CKN+++  A  L   +   G++P  V + TL     E   + +  +L  EM    
Sbjct: 472 LIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKD 531

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYT+ I GLCK   + ESV+L   +R      D   Y+ +I   CK+  +  A 
Sbjct: 532 IEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAF 591

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L     TY+++I GL   G ++ A  + + +++  +    + + T+I   
Sbjct: 592 ELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAH 651

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  + +++ H+M EK         S V++ L K
Sbjct: 652 CVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCK 688



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 36/242 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G C       A+    +   K   P VV  NT+     ++   + A   F  M + 
Sbjct: 155 IIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKY 214

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL----------------------FRTLRILK-- 96
           G+  DT +Y I I GL   G + E++EL                      F  L ++   
Sbjct: 215 GILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGA 274

Query: 97  ------------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
                        + D+  Y+ LI G C+ G +E AL L   L       +V+ YS+++ 
Sbjct: 275 REIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLS 334

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L   GQ+D+A  L  +ME N + P+++T+  LIHG  +  +  + I+L  +M    + P
Sbjct: 335 SLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFP 394

Query: 205 DA 206
           ++
Sbjct: 395 NS 396



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 107/206 (51%), Gaps = 4/206 (1%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           ++ +  AL +  +M  + ++P +  +N+L   L+ +   +  + ++++++  G     RT
Sbjct: 96  SRMVHDALFVLVKMKEQNLRPSIQTYNSL---LYNLRHTDIMWDVYNDIKDSGTPQSART 152

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
            +I +DGLC      ++V   R     +    + +++ ++   CK G  ++A   F  + 
Sbjct: 153 SSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMML 212

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           +  ++ D  +Y+I+IHGL   G M++A +L  DME+  + P+++T+  +  GF  +   S
Sbjct: 213 KYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMS 272

Query: 189 KVIELLHKM-KEKNVMPDASIVSIVV 213
              E++ KM  ++ + PD    ++++
Sbjct: 273 GAREIIQKMLTDEGLKPDLVTYTVLI 298


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L AD++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++AD  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 94/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ +  D++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 9/204 (4%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +M +N + PN +TF TLI G  +       +E+  +M  +         S+  DL+  N 
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ---------SLSADLITYNT 281

Query: 221 ISLNSLPSFTVHERQEEVDESNVK 244
           +         + + Q+ +DE ++K
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMK 305


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCKN  I+ AL ++ +ML KG+KP  V+++ +  GLF+  +   A K+F EM   G
Sbjct: 442 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 501

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY + + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 502 TTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAK 561

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV ++ TYS+MI  L  +   ++A +LF+ +E++  A +      ++   
Sbjct: 562 ELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRML 621

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E +K    L  + E N+  +AS +S++  L ++
Sbjct: 622 LNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSR 658



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K+ E++ A  L+ EM+ +G+ P ++I N++   L ++ ++++A  +  +M   G
Sbjct: 54  LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 113

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY++ IDGLCK+  + ++  +   +       +   Y+ LI G   SG    ++
Sbjct: 114 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 173

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    ++  V   +  IH L+  G+ ++A  +F  M      P++I++ T++HG+
Sbjct: 174 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 233

Query: 182 IRINEP--SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +   + V  + + M  K + P+  + +I+++  A+
Sbjct: 234 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYAR 272



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           N+++ ML+KGI P+  + N L         +++A  +F++MQ  G+  DT T+   I  L
Sbjct: 246 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 305

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVAD 135
           C+ G + +++  F  +  +        Y CLI G C  G L  A EL    + + +    
Sbjct: 306 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 365

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V  +S +I+ L  +G++ +  D+   M +    PNV+TF +L+ G+  +    +   LL 
Sbjct: 366 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 425

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
            M    + P+  I   +VD   KN
Sbjct: 426 AMASIGIEPNCYIYGTLVDGYCKN 449



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   M+  G +P+VV  N+L  G   +  +E AF L D M   G
Sbjct: 372 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 431

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   +DG CKNG I +++ +FR +     +     YS ++ GL ++ R   A 
Sbjct: 432 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 491

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +        + TY +++ GL  +   D+A+ L   +    V  ++ITF  +I   
Sbjct: 492 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 551

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +  EL   +    ++P+    S+++  L K E
Sbjct: 552 FKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEE 590



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH-NTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G C + E+  A  L SEM++K I P  V + +++   L +  +V     + D M + 
Sbjct: 336 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 395

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   ++G C  G + E+  L   +  +  E +   Y  L+DG CK+GR++ A
Sbjct: 396 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 455

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    +    V YSI++HGL+   +   A  +F +M E+    ++ T+G ++ G
Sbjct: 456 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 515

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             R N   +   LL K+   NV  D    +IV+  +            F V  RQE
Sbjct: 516 LCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM------------FKVGRRQE 559



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y +   ++ A+ ++ +M +KG+ PD V   T+   L  I +++ A   F+ M   
Sbjct: 265 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 324

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEI 119
           GV      Y   I G C +G +V++ EL   +         ++ +S +I+ LCK GR+  
Sbjct: 325 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 384

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             ++   + +     +VVT++ ++ G    G M++A  L   M    + PN   +GTL+ 
Sbjct: 385 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 444

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+ +       + +   M  K V P + + SI++
Sbjct: 445 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 478



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           +I+  C+   ++ AL+ ++ M+  G+ P   ++  L  G     ++ +A +L  EM  +D
Sbjct: 301 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 360

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                 + ++  I+ LCK G + E  ++   +       ++  ++ L++G C  G +E A
Sbjct: 361 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 420

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++    +  +   Y  ++ G   +G++D A  +F DM    V P  + +  ++HG
Sbjct: 421 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 480

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +    +   ++ H+M E           +V+  L +N  +
Sbjct: 481 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCT 522



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC    +E A  L   M S GI+P+  I+ TL  G  +  +++ A  +F +M   G
Sbjct: 407 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 466

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   +  Y+I + GL +      + ++F  +      + I  Y  ++ GLC++   + A 
Sbjct: 467 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 526

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  D++T++I+I  ++  G+  +A +LF  +    + PN+ T+  +I   
Sbjct: 527 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNL 586

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEISLNS 225
           I+     +   L   +++     D+ +++ IV  LL K E++  S
Sbjct: 587 IKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKAS 631



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 102/215 (47%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+K ++ A  +  +M+  G +P+ + +N+L  G         + ++F +M   
Sbjct: 123 LIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV         FI  L K+G   E+  +F ++ +   + DI +YS ++ G   +    +A
Sbjct: 183 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 242

Query: 121 --LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
               +F+ +    +  +   ++I+I+     G MDKA  +F DM+   + P+ +TF T+I
Sbjct: 243 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 302

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               RI      +   + M +  V P  ++   ++
Sbjct: 303 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLI 337



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           I  Y+ LID   +  R ++ L +   L +  L  D  +YS +I+G   DG++DKAH LFL
Sbjct: 14  IHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFL 72

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +M E  V P ++   ++I    ++ E  K   ++ KM +  + PD    S+++D L K++
Sbjct: 73  EMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSK 132



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +  +N L      +H+ +    +   + ++G+  D  +Y++ I G  K+G + ++  L
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSL-IYGFVKDGEVDKAHCL 70

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  +        I   + +I  LCK   ++ A  +   +    +  D+ TYS++I GL  
Sbjct: 71  FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 130

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              MDKA  +   M E    PN IT+ +LIHG+      ++ + +  +M    V+P
Sbjct: 131 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 186


>gi|255561941|ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538783|gb|EEF40383.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 496

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 122/230 (53%), Gaps = 2/230 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G CK  +++ A++L  +M   G  PDVV +NT+   +F     ++A + + E  R 
Sbjct: 173 MMVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRR 232

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE-I 119
           G      TYTI I+ +CK+   V ++E+   + I  C  D+  Y+ L++  CK G+ E  
Sbjct: 233 GCPPYLITYTILIELVCKHCGTVRAMEVLEDMAIEGCYPDLVTYNSLVNFTCKQGKYEDA 292

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL + + L  G +  + +TY+ ++H L + G  D+  ++   M+E +  P V+T+ TLI+
Sbjct: 293 ALIIINMLSHG-MEPNAITYNTLLHSLCSCGLWDEVDEILTVMKETSHPPTVVTYNTLIN 351

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           G  +    ++ I+  H+M  +N +PD    + ++  L K E  ++    F
Sbjct: 352 GLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLGALCKEECWMSPSSQF 401



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K  +I  A  +   M+  G  PDV+ +N +  GL +  +++ A  L ++M   G
Sbjct: 139 LIRGFIKVDQINKAARILKIMVMSGGVPDVITYNMMVGGLCKRGKLKSAIDLLEDMSLSG 198

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I  +  N    ++V  ++      C   +  Y+ LI+ +CK      A+
Sbjct: 199 CPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRRGCPPYLITYTILIELVCKHCGTVRAM 258

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +       D+VTY+ +++     G+ + A  + ++M  + + PN IT+ TL+H  
Sbjct: 259 EVLEDMAIEGCYPDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSL 318

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  +V E+L  MKE +  P     + +++ L K+
Sbjct: 319 CSCGLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKS 356



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE-------IHQVERAFKLF 54
           LING CK+  +  A++ + +M+ +   PD+V +NTL   L +         Q E A ++ 
Sbjct: 349 LINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLGALCKEECWMSPSSQFEDAVEIL 408

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
            EM +     ++  Y   IDGLC N     ++++   +   +C+ D + YS LI+ L  +
Sbjct: 409 REMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQVLEIMISSRCKPDEEIYSALINSLADA 468

Query: 115 GRLEIALELFHSL 127
           G +E A EL   L
Sbjct: 469 GMMEEANELRQKL 481



 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-------NGY 81
           P VV +NTL  GL +   V RA   F +M  +    D  TY   +  LCK       +  
Sbjct: 341 PTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLGALCKEECWMSPSSQ 400

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
             ++VE+ R +      ++  AY  +IDGLC + + +IA+++   +       D   YS 
Sbjct: 401 FEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQVLEIMISSRCKPDEEIYSA 460

Query: 142 MIHGLYNDGQMDKAHDL 158
           +I+ L + G M++A++L
Sbjct: 461 LINSLADAGMMEEANEL 477



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 76/169 (44%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A +L D M R     +    T  I G  K   I ++  + + + +     D+  Y+ ++ 
Sbjct: 117 APRLIDVMARRSQIPNFSCCTNLIRGFIKVDQINKAARILKIMVMSGGVPDVITYNMMVG 176

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           GLCK G+L+ A++L   +       DVVTY+ +I  ++++   D+A   + +       P
Sbjct: 177 GLCKRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRRGCPP 236

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +IT+  LI    +     + +E+L  M  +   PD    + +V+   K
Sbjct: 237 YLITYTILIELVCKHCGTVRAMEVLEDMAIEGCYPDLVTYNSLVNFTCK 285



 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 46/109 (42%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           LC  GRL  A  L   + R   + +    + +I G     Q++KA  +   M  +   P+
Sbjct: 108 LCNKGRLMDAPRLIDVMARRSQIPNFSCCTNLIRGFIKVDQINKAARILKIMVMSGGVPD 167

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           VIT+  ++ G  +  +    I+LL  M      PD    + ++  +  N
Sbjct: 168 VITYNMMVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRCMFHN 216


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK K    A  ++ EM   G+ P V ++N+L  G F     + A  L+ EM R G
Sbjct: 297 LIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLG 356

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T +I + GLC  G +  +    + ++     L+  AY+ LID  C+ G LE AL
Sbjct: 357 LCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEAL 416

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  +VV+YS +I G    G+M  A  ++ +M    + PNV+T+  LIHG 
Sbjct: 417 ATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGH 476

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +         L  +M E  + P+A  VS++VD L +
Sbjct: 477 AKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCR 513



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 102/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K +    A  L+ EML +G+ P VV +NTL         V +A +++D+M    
Sbjct: 157 VLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQ 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I  LC+ G I ++  LF  ++    + +   Y+ L+ G C+   +  A+
Sbjct: 217 IDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAV 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  L +  L  + V ++ +I G     +  +A  +FL+M    VAP V  + +L+ G 
Sbjct: 277 VLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGA 336

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     + + L  +M    + PD    SIVV
Sbjct: 337 FRSGNAQEALALYQEMTRLGLCPDEFTCSIVV 368



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 96/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C+   I  A  L+  M   G++P+   +N L  G  +   V  A  L+ E+ + G
Sbjct: 227 MICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSG 286

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  IDG CK     E+  +F  +        +  Y+ L+DG  +SG  + AL
Sbjct: 287 LNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEAL 346

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R  L  D  T SI++ GL + GQM  A      ++E+ V  N   +  LI  +
Sbjct: 347 ALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEY 406

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            RI    + +    +M E  + P+    S ++D
Sbjct: 407 CRIGNLEEALATCTRMTEVGIEPNVVSYSSLID 439



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 22/181 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K  +++ A+ +Y+EM++KGI+P+VV +  L  G  +   ++ AF+L  EM  +G
Sbjct: 437 LIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENG 496

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  T ++ +DGLC+   + E+V        LKC  DI +                  
Sbjct: 497 ISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCS-DIHS------------------ 537

Query: 122 ELFH--SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +F   ++    L+ + V Y  +I+GLY DGQ  +A  LF  M ++ + P+  T+  LI 
Sbjct: 538 -VFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIR 596

Query: 180 G 180
           G
Sbjct: 597 G 597



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 90/186 (48%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +   N +  GL +  +   A++LFDEM R G+     TY   I+     G + ++ E+
Sbjct: 149 PALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEV 208

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +  +   + + ++  Y+ +I  LC+ G +  A  LF ++    +  +  TY++++ G   
Sbjct: 209 WDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQ 268

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
              ++ A  L+ ++ ++ + PN + F TLI GF +    S+   +  +M    V P   +
Sbjct: 269 RDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPV 328

Query: 209 VSIVVD 214
            + ++D
Sbjct: 329 YNSLMD 334



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           + +  L + G + E++ +FR LR L     + A + ++DGL K+ R   A ELF  + R 
Sbjct: 124 VLVIALSQMGLLDEALYVFRRLRTLPA---LPACNAVLDGLVKARRPGCAWELFDEMLRR 180

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            LV  VVTY+ +I+     G + KA +++  M    + PNV+T+ T+I            
Sbjct: 181 GLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDA 240

Query: 191 IELLHKMKEKNVMPD 205
             L   MKE  + P+
Sbjct: 241 ERLFDAMKEAGMQPN 255


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   +E A  + + M S G+KP+VV +NT+  GL    + + A +L  EM +  
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I +D  C+NG +   +EL   +    C  D+  Y+ +I+G CK G ++ A+
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+       + V+Y+I++ GL + G+   A +L   M +    PN +TF TLI+  
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFL 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IELL +M      PD    S V+D L K
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +C+N  ++  + L  +MLS G  PDV+ + T+  G  +   ++ A  L   M   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T +YTI + GLC  G  V++ EL   +    C  +   ++ LI+ LCK G +E A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       D+++YS +I GL   G+ ++A +L   M    ++PN I + ++   
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R    +KVI++   +K+  +  DA + + V+  L K
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   I+ A+ L   M S G KP+ V +  +  GL    +   A +L  +M + G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   I+ LCK G + +++EL + + +  C  D+ +YS +IDGL K+G+ E AL
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    +  + + YS +   L  +G+++K   +F ++++  +  + + +  +I   
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            +  E  + I+    M     MP+ S  ++++  LA   ++
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++N  C+   ++ A+ L  ++   G + D+V +N +  GL    +     +L DEM R 
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV 245

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A +  T+   I  LC+NG      E+   +    C  DI+ Y+ +IDG+CK G LE+A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ + +P   L  +VV Y+ ++ GL +  +  +A +L  +M +     + +TF  L+  
Sbjct: 306 NEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF 365

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +     +VIELL +M     MPD    + V++   K
Sbjct: 366 FCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCK 403



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    I  AL +  EM  KG  P   +++ +            + ++ + M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT    + ++ +C+ G + E+V L R L    CE DI +Y+ ++ GLC + R     
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     ++VT++ +I  L  +G  ++ H++   M E+   P++  + T+I G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +        E+L++M    + P+    + V+  L   E
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K       L  EM+     P++V  NTL   L      ER  ++  +M   G
Sbjct: 222 VLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R Y   IDG+CK G++  + E+   +     + ++  Y+ ++ GLC + R + A 
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +     D VT++I++     +G +D+  +L   M  +   P+VIT+ T+I+GF
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + LL  M      P+    +IV+  L  
Sbjct: 402 CKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+N   E    + ++M   G  PD+ ++ T+  G+ +   +E A ++ + M   G
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   + GLC      E+ EL   +    C LD   ++ L+D  C++G ++  +
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVI 376

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     + DV+TY+ +I+G   +G +D+A  L   M      PN +++  ++ G 
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     EL+ +M ++   P+    + +++ L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK   +E A+ L  +ML  G  PD++ ++T+  GL +  + E A +L + M   G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T  Y+     L + G + + +++F  ++      D   Y+ +I  LCK    + A+
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           + F  +     + +  TY+++I GL ++G   +A +L  ++
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 45/212 (21%)

Query: 62  VAADTRTYTIF--IDGLCKNGYIVESVEL----------------------------FR- 90
           V      YT F  + GLC  G I +++E+                            FR 
Sbjct: 105 VPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 91  TLRILK------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++R+L+      C LD    + +++ +C+ G ++ A+ L   L      AD+V+Y+ ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL    +     +L  +M     APN++TF TLI    R     +V E+L +M E    P
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 205 DASIVSIVVDLLAK-------NEISLNSLPSF 229
           D  + + ++D + K       NEI LN +PS+
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEI-LNRMPSY 315


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+  +  A NL+ +M   G+ P+   ++ L  G F+       F++++ M+R G
Sbjct: 199 LIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSG 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   I   C +G + ++ ++F  +R       +  Y+ LI GLC+  +   A+
Sbjct: 259 IVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAV 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H + +  L  ++VTY+I+I+G  +  +MD A  LF  ++ + ++P ++T+ TLI G+
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++   +  ++L+ +M+E+ + P     +I++D  A+
Sbjct: 379 SKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFAR 415



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 108/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+ K         +Y  M   GI P+   +N L         V++AFK+F EM+  
Sbjct: 233 VLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREK 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A    TY I I GLC+     E+V+L   +  +    +I  Y+ LI+G C   +++ A
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+ L    L   +VTY+ +I G      +  A DL  +MEE  +AP+ +T+  LI  
Sbjct: 353 VRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R+N   K  E+   M++  ++PD    S+++
Sbjct: 413 FARLNHTEKACEMHSLMEKSGLVPDVYTYSVLL 445



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C+ K+   A+ L  ++   G+ P++V +N L  G  ++ +++ A +LF++++  
Sbjct: 303 ILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSS 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++    TY   I G  K   +  +++L + +           Y+ LID   +    E A
Sbjct: 363 GLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +  LV DV TYS+++HGL   G M +A  LF  + E  + PN + + T+IHG
Sbjct: 423 CEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +     + + LL++M +  ++P+ +     + LL ++E
Sbjct: 483 YCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDE 522



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 2/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+C  ++++ A+ L++++ S G+ P +V +NTL  G  ++  +  A  L  EM+  
Sbjct: 338 ILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEER 397

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A    TYTI ID   +  +  ++ E+   +       D+  YS L+ GLC  G ++ A
Sbjct: 398 CIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEA 457

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF SL    L  + V Y+ MIHG   +G   +A  L  +M ++ + PNV +F + I G
Sbjct: 458 SKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTI-G 516

Query: 181 FIRINEPSKVIE-LLHKMKEKNVMPDASIVSIV 212
            +  +E  K  E LL +M    + P  S+  +V
Sbjct: 517 LLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N Y  +   + AL     M+ +G  P     N L   L   +  ++A+ +F+E+ +  
Sbjct: 95  VVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNEL-KSK 153

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  ++ I I G C+ GY V+   L   L       ++  Y+ LIDG CK G + +A 
Sbjct: 154 VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAK 213

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY---------------------------------- 147
            LF  + R  LV +  TYS++++G +                                  
Sbjct: 214 NLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEY 273

Query: 148 -NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            NDG +DKA  +F +M E  +A  V+T+  LI G  R  +  + ++L+HK+ +  + P+ 
Sbjct: 274 CNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNI 333

Query: 207 SIVSIVVD 214
              +I+++
Sbjct: 334 VTYNILIN 341



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+         L + +   G+ P+VVI+ TL  G  +   V  A  LF +M R 
Sbjct: 163 IMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRL 222

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY++ ++G  K G   E  +++  ++      +  AY+CLI   C  G ++ A
Sbjct: 223 GLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKA 282

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    +   V+TY+I+I GL    +  +A  L   + +  ++PN++T+  LI+G
Sbjct: 283 FKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILING 342

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F  + +    + L +++K   + P
Sbjct: 343 FCDVRKMDSAVRLFNQLKSSGLSP 366


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +        E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 97/172 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G++  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +  AP+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K   ++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+     P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYAP 414



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 119/219 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK  ++   L  + EM   G+KP+VV ++TL     +   +++A K + +M+R G
Sbjct: 209 LINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLG 268

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  +D  CK G + ++  L   +  +  E ++  Y+ LIDGLC   R++ A 
Sbjct: 269 LVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAE 328

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    ++ ++ +Y+ +IHG      MD+A +L  +M+   + P+++ +GT I   
Sbjct: 329 ELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSL 388

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + +      ++++M+EK +  +  I + ++D   K+E
Sbjct: 389 CGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSE 427



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 110/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY K   ++  +  + EM S   +PDV+ +NTL     +  ++ +  + F EM++ G
Sbjct: 174 MIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSG 233

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y+  +D  CK   + ++++ +  +R L    +   Y+ L+D  CK G L  A 
Sbjct: 234 LKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAF 293

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  +VVTY+ +I GL +  ++ +A +LF  M    V PN+ ++  LIHGF
Sbjct: 294 RLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGF 353

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           ++     + +ELL +MK + + PD
Sbjct: 354 VKAKNMDRALELLDEMKGRGIKPD 377



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 109/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + +  + +G    + +M+  G KP V  +N +   + +   +E A  LF+EM+  G
Sbjct: 104 LLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRG 163

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   IDG  K G + ++V  F  ++ + CE D+  Y+ LI+  CK G+L   L
Sbjct: 164 LIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGL 223

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F  + +  L  +VV+YS ++     +  M +A   ++DM    + PN  T+ +L+  +
Sbjct: 224 EFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAY 283

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +I   S    L  +M +  V  +    + ++D L   E
Sbjct: 284 CKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVE 322



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 114/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +CK   ++ AL  Y +M   G+ P+   + +L     +I  +  AF+L DEM + G
Sbjct: 244 LVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  IDGLC    I E+ ELF  +       ++ +Y+ LI G  K+  ++ AL
Sbjct: 304 VEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRAL 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  D++ Y   I  L    +++ A  +  +M+E  +  N   + TL+  +
Sbjct: 364 ELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAY 423

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   PS+ + LL +M E ++   A    +++D L KN++   ++  F
Sbjct: 424 FKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYF 471



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 37/220 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K K ++ AL L  EM  +GIKPD++++ T    L  + ++E A  + +EMQ  G
Sbjct: 349 LIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKG 408

Query: 62  VAADTRTYT-----------------------------------IFIDGLCKNGYIVESV 86
           + A+T  YT                                   + IDGLCKN  + +++
Sbjct: 409 IKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAI 468

Query: 87  ELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + F R       + +   Y+ +IDGLCK  ++E A  LF  + +  LV D   Y+ +I G
Sbjct: 469 DYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDG 528

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
               G + +A  L   M E  V      FG L    I+++
Sbjct: 529 KLKQGNVVQALALRDKMAEIGVESGA-RFGDLCQNTIKLS 567



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 93/198 (46%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P   + + LF  L E    E A + F +M+R  V   TR+    +    + G        
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F+ +     +  +  Y+ +ID +CK G +E A  LF  +    L+ D VTY+ MI G   
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++D     F +M+  +  P+VIT+ TLI+ F +  +  K +E   +MK+  + P+   
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 209 VSIVVDLLAKNEISLNSL 226
            S +VD   K ++   +L
Sbjct: 241 YSTLVDAFCKEDMMQQAL 258



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
            E AL  +S+M    + P     N L      + + +   + F +M   G      TY I
Sbjct: 79  FEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNI 138

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            ID +CK G I  +  LF  ++      D   Y+ +IDG  K GRL+  +  F  +    
Sbjct: 139 MIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+     G++ K  + F +M+++ + PNV+++ TL+  F + +   + +
Sbjct: 199 CEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAL 258

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    M+   ++P+    + +VD   K
Sbjct: 259 KFYVDMRRLGLVPNEHTYTSLVDAYCK 285



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI+G CKNK +  A++ +  + +  G++ +  I+  +  GL +  QVE A  LF++M +
Sbjct: 453 VLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQ 512

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVEL 88
            G+  D   YT  IDG  K G +V+++ L
Sbjct: 513 KGLVPDRTAYTSLIDGKLKQGNVVQALAL 541


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   +E A  + + M S G+KP+VV +NT+  GL    + + A +L  EM +  
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I +D  C+NG +   +EL   +    C  D+  Y+ +I+G CK G ++ A+
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+       + V+Y+I++ GL + G+   A +L   M +    PN +TF TLI+  
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFL 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IELL +M      PD    S V+D L K
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +C+N  ++  + L  +MLS G  PDV+ + T+  G  +   ++ A  L   M   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T +YTI + GLC  G  V++ EL   +    C  +   ++ LI+ LCK G +E A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       D+++YS +I GL   G+ ++A +L   M    ++PN I + ++   
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R    +KVI++   +K+  +  DA + + V+  L K
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   I+ A+ L   M S G KP+ V +  +  GL    +   A +L  +M + G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   I+ LCK G + +++EL + + +  C  D+ +YS +IDGL K+G+ E AL
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    +  + + YS +   L  +G+++K   +F ++++  +  + + +  +I   
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            +  E  + I+    M     MP+ S  ++++  LA   ++
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++N  C+   ++ A+ L  ++   G + D+V +N +  GL    +     +L DEM R 
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV 245

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A +  T+   I  LC+NG      E+   +    C  DI+ Y+ +IDG+CK G LE+A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ + +P   L  +VV Y+ ++ GL +  +  +A +L  +M +     + +TF  L+  
Sbjct: 306 NEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF 365

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +     +VIELL +M     MPD    + V++   K
Sbjct: 366 FCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCK 403



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    I  AL +  EM  KG  P   +++ +            + ++ + M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT    + ++ +C+ G + E+V L R L    CE DI +Y+ ++ GLC + R     
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     ++VT++ +I  L  +G  ++ H++   M E+   P++  + T+I G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +        E+L++M    + P+    + V+  L   E
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K       L  EM+     P++V  NTL   L      ER  ++  +M   G
Sbjct: 222 VLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R Y   IDG+CK G++  + E+   +     + ++  Y+ ++ GLC + R + A 
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +     D VT++I++     +G +D+  +L   M  +   P+VIT+ T+I+GF
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + LL  M      P+    +IV+  L  
Sbjct: 402 CKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+N   E    + ++M   G  PD+ ++ T+  G+ +   +E A ++ + M   G
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   + GLC      E+ EL   +    C LD   ++ L+D  C++G ++  +
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVI 376

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     + DV+TY+ +I+G   +G +D+A  L   M      PN +++  ++ G 
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     EL+ +M ++   P+    + +++ L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK   +E A+ L  +ML  G  PD++ ++T+  GL +  + E A +L + M   G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T  Y+     L + G + + +++F  ++      D   Y+ +I  LCK    + A+
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           + F  +     + +  TY+++I GL ++G   +A +L  ++
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 45/212 (21%)

Query: 62  VAADTRTYTIF--IDGLCKNGYIVESVEL----------------------------FR- 90
           V      YT F  + GLC  G I +++E+                            FR 
Sbjct: 105 VPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 91  TLRILK------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++R+L+      C LD    + +++ +C+ G ++ A+ L   L      AD+V+Y+ ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL    +     +L  +M     APN++TF TLI    R     +V E+L +M E    P
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 205 DASIVSIVVDLLAK-------NEISLNSLPSF 229
           D  + + ++D + K       NEI LN +PS+
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEI-LNRMPSY 315


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK   +E A  + + M S G+KP+VV +NT+  GL    + + A +L  EM +  
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I +D  C+NG +   +EL   +    C  D+  Y+ +I+G CK G ++ A+
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+       + V+Y+I++ GL + G+   A +L   M +    PN +TF TLI+  
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFL 471

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IELL +M      PD    S V+D L K
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +C+N  ++  + L  +MLS G  PDV+ + T+  G  +   ++ A  L   M   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T +YTI + GLC  G  V++ EL   +    C  +   ++ LI+ LCK G +E A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       D+++YS +I GL   G+ ++A +L   M    ++PN I + ++   
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R    +KVI++   +K+  +  DA + + V+  L K
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   I+ A+ L   M S G KP+ V +  +  GL    +   A +L  +M + G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   I+ LCK G + +++EL + + +  C  D+ +YS +IDGL K+G+ E AL
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    +  + + YS +   L  +G+++K   +F ++++  +  + + +  +I   
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            +  E  + I+    M     MP+ S  ++++  LA   ++
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++N  C+   ++ A+ L  ++   G + D+V +N +  GL    +     +L DEM R 
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV 245

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A +  T+   I  LC+NG      E+   +    C  DI+ Y+ +IDG+CK G LE+A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+ + +P   L  +VV Y+ ++ GL +  +  +A +L  +M +     + +TF  L+  
Sbjct: 306 NEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF 365

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +     +VIELL +M     MPD    + V++   K
Sbjct: 366 FCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCK 403



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    I  AL +  EM  KG  P   +++ +            + ++ + M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT    + ++ +C+ G + E+V L R L    CE DI +Y+ ++ GLC + R     
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     ++VT++ +I  L  +G  ++ H++   M E+   P++  + T+I G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +        E+L++M    + P+    + V+  L   E
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K       L  EM+     P++V  NTL   L      ER  ++  +M   G
Sbjct: 222 VLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R Y   IDG+CK G++  + E+   +     + ++  Y+ ++ GLC + R + A 
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +     D VT++I++     +G +D+  +L   M  +   P+VIT+ T+I+GF
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + + LL  M      P+    +IV+  L  
Sbjct: 402 CKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+N   E    + ++M   G  PD+ ++ T+  G+ +   +E A ++ + M   G
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   + GLC      E+ EL   +    C LD   ++ L+D  C++G ++  +
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVI 376

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     + DV+TY+ +I+G   +G +D+A  L   M      PN +++  ++ G 
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     EL+ +M ++   P+    + +++ L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK   +E A+ L  +ML  G  PD++ ++T+  GL +  + E A +L + M   G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T  Y+     L + G + + +++F  ++      D   Y+ +I  LCK    + A+
Sbjct: 527 ISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAI 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           + F  +     + +  TY+++I GL ++G   +A +L  ++
Sbjct: 587 DFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 45/212 (21%)

Query: 62  VAADTRTYTIF--IDGLCKNGYIVESVEL----------------------------FR- 90
           V      YT F  + GLC  G I +++E+                            FR 
Sbjct: 105 VPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 91  TLRILK------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           ++R+L+      C LD    + +++ +C+ G ++ A+ L   L      AD+V+Y+ ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL    +     +L  +M     APN++TF TLI    R     +V E+L +M E    P
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 205 DASIVSIVVDLLAK-------NEISLNSLPSF 229
           D  + + ++D + K       NEI LN +PS+
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEI-LNRMPSY 315


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 104/214 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG  K + +  A   + EMLSKG++PD   +NT       +     AF+L + M   
Sbjct: 453 ILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLK 512

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  DT TY + IDGLCK G + ++  L   +     + D   Y+CLI   C+ G L  A
Sbjct: 513 GIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREA 572

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L + +    L   VVTY+I++H     G +  A+  F  M +  + PN IT+  LIH 
Sbjct: 573 RKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHA 632

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                         H+M E+ + P+    ++++D
Sbjct: 633 LCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLID 666



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK   ++ A  L ++M+S G++PD + +  L     E   +  A KL + M  D
Sbjct: 523 VIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSD 582

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYTI +   C+ G +  +   FR +  +  E +   Y+ LI  LC +GR  +A
Sbjct: 583 GLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLA 642

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              FH +    L  +  TY+++I G   +G    A  L+ +M +N + P+  T   L  G
Sbjct: 643 FRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKG 702

Query: 181 F 181
           F
Sbjct: 703 F 703



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 98/218 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI    +   +  A  L  EM ++GI P VV +N +  GL +  Q E A   F EM+  G
Sbjct: 314 LITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   ++  CK G + E++ L   LR       +  Y+ LIDG C+ G L  A 
Sbjct: 374 LLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEAR 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       DV TY+I+++G      +  A + F +M    + P+   + T I   
Sbjct: 434 RLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAE 493

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + ++      +L   M  K + PD    ++++D L K 
Sbjct: 494 LTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKT 531



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 90/191 (47%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  L   M+ KGI PD V +N +  GL +   ++ A +L  +M  DG+  D  TYT  I 
Sbjct: 502 AFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIH 561

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C+ G + E+ +L   +     +  +  Y+ L+   C+ G L  A   F  +    +  
Sbjct: 562 AHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEP 621

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + +TY+++IH L   G+   A   F +M E  +APN  T+  LI G  R    +  I L 
Sbjct: 622 NEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLY 681

Query: 195 HKMKEKNVMPD 205
            +M +  + PD
Sbjct: 682 FEMHQNGIPPD 692



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 96/215 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+  ++  A  L  EM+ +G  PDV  +  L  G  ++  +  A + FDEM   G
Sbjct: 419 LIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I           + +L   + +     D   Y+ +IDGLCK+G L+ A 
Sbjct: 479 LQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAK 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D +TY+ +IH     G + +A  L   M  + + P+V+T+  L+H  
Sbjct: 539 RLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTC 598

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            R            KM +  + P+    ++++  L
Sbjct: 599 CRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 633



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K ++ E A   ++EM + G+ PDV+ +N+L     +   ++ A  L  +++R G
Sbjct: 349 IIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAG 408

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY   IDG C+ G + E+  L   +    C  D+  Y+ L++G  K   L +A 
Sbjct: 409 LAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAR 468

Query: 122 ELFHS-LPRGV----------------------------------LVADVVTYSIMIHGL 146
           E F   L +G+                                  +  D VTY+++I GL
Sbjct: 469 EFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGL 528

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +  A  L   M  + + P+ IT+  LIH         +  +LL+ M    + P  
Sbjct: 529 CKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSV 588

Query: 207 SIVSIVV 213
              +I+V
Sbjct: 589 VTYTILV 595



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 8/235 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I+   +   +E A+ L   M LSK  K     +N L   L E   V +A  L  EM+ 
Sbjct: 279 VVISFLAREGHLENAVKLVDSMRLSK--KASSFTYNPLITALLERGFVRKAEALQMEMEN 336

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G+     TY   I GL K      +   F  +R +    D+  Y+ L++  CK+G L+ 
Sbjct: 337 EGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKE 396

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL L   L R  L   V+TY+ +I G    G + +A  L  +M E    P+V T+  L++
Sbjct: 397 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMN 456

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP-SFTVHE 233
           G  ++   +   E   +M  K + PD    +  +      E++L+S P +F + E
Sbjct: 457 GSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRI----CAELTLSSTPMAFQLRE 507



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 98/199 (49%), Gaps = 3/199 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--QRDGVAADTRTYTIFIDG 75
           +Y EML   ++P +V +NTL     +  + + A  L  EM  Q  G + +  T+ + I  
Sbjct: 224 VYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISF 283

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + G++  +V+L  ++R+ K +     Y+ LI  L + G +  A  L   +    ++  
Sbjct: 284 LAREGHLENAVKLVDSMRLSK-KASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPT 342

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTY+ +IHGL    Q + A   F +M    + P+VIT+ +L++ + +     + + LL 
Sbjct: 343 VVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLG 402

Query: 196 KMKEKNVMPDASIVSIVVD 214
            ++   + P     + ++D
Sbjct: 403 DLRRAGLAPTVLTYNTLID 421



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G+ PDV   N +   L +  + +    ++ EM +  V     TY   +D   K G   E+
Sbjct: 197 GVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEA 256

Query: 86  VELFRTLRILKCELDIQ--AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
             L + +        +    ++ +I  L + G LE A++L  S+ R    A   TY+ +I
Sbjct: 257 SMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSM-RLSKKASSFTYNPLI 315

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             L   G + KA  L ++ME   + P V+T+  +IHG ++  +         +M+   ++
Sbjct: 316 TALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLL 375

Query: 204 PD 205
           PD
Sbjct: 376 PD 377



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH 45
           +LI+G C+      A+ LY EM   GI PD   HN LF G  E H
Sbjct: 663 LLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDEGH 707


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 123/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+ +A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +    +E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  +  A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  ++E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 114/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +V ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V  A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 LEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPD 275


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCKN +IE A  L+ E+  KG  P V  +  +     +  + E   KL  EM+  G
Sbjct: 243 LIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A   + +   ID   K+G  +E+ +  R +    CE D+  Y+ LI+G C  G++  A 
Sbjct: 303 LAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAE 362

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL  H++ RG L  +  +Y+ +IH    +G+  +A +L ++M E     ++I +G L+HG
Sbjct: 363 ELLEHAIRRG-LFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHG 421

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +   E    + +  KM E+ ++PDA+I ++++  L K
Sbjct: 422 LVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCK 459



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 6/237 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK      A  L  EML + + PD  ++ TL  G      ++ A KLF      
Sbjct: 452 VLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIER 511

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+          I G CK G + +++  F+ +       D   YS +IDG  K   L  A
Sbjct: 512 GIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGA 571

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  + +     +VVT++ +I+G   +G +++A  +F +M      PNV+T+  LI  
Sbjct: 572 LRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGY 631

Query: 181 FIRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEISL-----NSLPSFTV 231
           F +  + +K      +M     +P DA+   +V  L   N I++     NS P+ T+
Sbjct: 632 FCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTL 688



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G     E++ AL +  +M+ +GI PD  I+N L  GL +  +   A +L  EM    
Sbjct: 418 LVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQN 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEI 119
           V  D       +DG  ++G + E+ +LF+    ++  +D     C  +I G CK G +  
Sbjct: 478 VTPDAFVNATLVDGFIRHGNLDEAKKLFQL--TIERGIDTSVVECNAMIKGYCKYGMMND 535

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL  F  +  GV   D  TYS +I G      +  A  +F  M +    PNV+TF +LI+
Sbjct: 536 ALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLIN 595

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           GF R  + ++  ++  +M+     P+    +I++    K
Sbjct: 596 GFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCK 634



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 4/186 (2%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           EIE A +    M+  G +PD+  +NTL  G     +V  A +L +   R G+  +  +YT
Sbjct: 323 EIEAA-DAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYT 381

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             I    KNG  V + EL   +      LD+ AY  L+ GL  +G +++AL +   +   
Sbjct: 382 PLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMER 441

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR---INEP 187
            ++ D   Y++++ GL   G+   A  L ++M +  V P+     TL+ GFIR   ++E 
Sbjct: 442 GILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEA 501

Query: 188 SKVIEL 193
            K+ +L
Sbjct: 502 KKLFQL 507



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 14/204 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY K  ++ GAL ++  ML K  KP+VV   +L  G      + RA K+F+EM+  G
Sbjct: 558 IIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFG 617

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYTI I   CK G + ++   F  + I KC  +   ++ L++GL  +  + I+ 
Sbjct: 618 FEPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISS 677

Query: 122 ELFHSLPR------GVLVAD-----VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +  +S P       G++++D     +  Y+ ++  L     +  A  L   M      P+
Sbjct: 678 KRSNSQPNLTLEFFGMMISDGWDWRIAAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPD 737

Query: 171 VITFGTLIHGFI---RINEPSKVI 191
            ++F  L+HG     R+ + + VI
Sbjct: 738 PVSFIALLHGLCLEGRLQDWNNVI 761



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + KN E   A  L  EM  +G   D++ +  L  GL    +V+ A  + D+M   G
Sbjct: 383 LIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + + GLCK G    + +L   +       D    + L+DG  + G L+ A 
Sbjct: 443 ILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAK 502

Query: 122 ELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +LF  ++ RG+  + VV  + MI G    G M+ A   F  M     +P+  T+ T+I G
Sbjct: 503 KLFQLTIERGIDTS-VVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDG 561

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +++ N+    + +   M +K   P+    + +++   +N
Sbjct: 562 YVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRN 600



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
            +I+ Y  +  ++ AL LY+ ++      PDV   N+L   L    +VE A K++DEM  
Sbjct: 136 FVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVD 195

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
                D  T  I   GLCK G + E   L        C  +I  Y+ LIDG CK+G +E 
Sbjct: 196 RNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIER 255

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  LF  L     +  V TY  MI+     G+ +    L ++M+E  +A ++  F  +I 
Sbjct: 256 ANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIID 315

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              +     +  + +  M E    PD +  + +++
Sbjct: 316 ARFKHGCEIEAADAVRWMIESGCEPDMATYNTLIN 350



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 96/218 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N    + ++E A  +Y EM+ +    D      +  GL +  +VE    L ++    G
Sbjct: 173 LLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKG 232

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   IDG CKNG I  +  LF+ L++      ++ Y  +I+  CK G+ E   
Sbjct: 233 CVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVD 292

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L   +  ++ +I   +  G   +A D    M E+   P++ T+ TLI+G 
Sbjct: 293 KLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGS 352

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +  +  ELL     + + P+    + ++   +KN
Sbjct: 353 CSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKN 390



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 85/213 (39%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   ++  A  L    + +G+ P+   +  L     +  +  RA +L  EM   G
Sbjct: 348 LINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERG 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   + GL   G +  ++ +   +       D   Y+ L+ GLCK GR   A 
Sbjct: 408 HTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAK 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  D    + ++ G    G +D+A  LF    E  +  +V+    +I G+
Sbjct: 468 QLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGY 527

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +    +  +    +M      PD    S ++D
Sbjct: 528 CKYGMMNDALLCFKRMFNGVHSPDEFTYSTIID 560


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +        E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G++  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  ++E A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  ++E A  L+ EML+ G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +M+ A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M  N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK++ +  AL+++SE+  KG++PDV  ++ L  GL    Q E A  LF+EM    
Sbjct: 230 IIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLN 289

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I +D LCK G + E+  + + +     E +   Y+ L++G C   ++  A 
Sbjct: 290 IMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEAR 349

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F ++     + +VV+Y+I+I+G     ++D+A +LF +M    + PN   + TLI G 
Sbjct: 350 MVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGL 409

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +  EL   M+ +   PD    +I++D L K
Sbjct: 410 CQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCK 446



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 114/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C   +   A+  + EM++ G +P++  +NT+  G  +I +   A  L  +M + G
Sbjct: 160 LINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAG 219

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   IDGLCK+  + E++++F  ++      D+  YS L+ GLC S + E A 
Sbjct: 220 GRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEAS 279

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    ++ DVVT++I++  L  +G + +A  +   M E  V PN  T+ +L++G+
Sbjct: 280 ALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGY 339

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N+  +   +   M  K  MP+    +I+++   K +
Sbjct: 340 CLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQ 378



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 106/205 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN + + + ++ A ++  +++  G +PD V  ++L  GL    +  RA + FDEM   
Sbjct: 124 ILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS 183

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY   I G CK G    +V L + +       DI  Y+ +IDGLCK   +  A
Sbjct: 184 GYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEA 243

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  DV TYSI++HGL N  Q ++A  LF +M    + P+V+TF  L+  
Sbjct: 244 LDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDK 303

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +    S+   ++  M EK V P+
Sbjct: 304 LCKEGMLSEAQGIIKIMIEKGVEPN 328



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 87/151 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC   ++  A  ++  M++KG  P+VV +N L  G  +  +++ A +LFDEM   G
Sbjct: 335 LMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRG 394

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T  Y   I GLC+ G   E+ ELF+ ++   C  D+   + L+D LCK G L+ AL
Sbjct: 395 LIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNAL 454

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
            LF ++    L  ++VTY I+I  +Y  G++
Sbjct: 455 RLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I+ DV   N L      + +V+ AF +  ++ + G   D  T++  I+GLC       ++
Sbjct: 115 IERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAM 174

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           E F  +     + ++  Y+ +I G CK G+  +A+ L   + +     D+V Y+ +I GL
Sbjct: 175 EFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGL 234

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             D  + +A D+F +++   V P+V T+  L+HG    ++  +   L ++M   N+MPD 
Sbjct: 235 CKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDV 294

Query: 207 SIVSIVVDLLAK 218
              +I+VD L K
Sbjct: 295 VTFNILVDKLCK 306



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 69/117 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGYCK + I+ A  L+ EM  +G+ P+   +NTL  GL +  +   A +LF +MQ  
Sbjct: 369 ILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQ 428

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           G + D  T TI +D LCK GY+  ++ LFR ++    + ++  Y  LI  + KSG++
Sbjct: 429 GCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 77/145 (53%)

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + L + + +L+ E D+  ++ LI+   +  R++ A  +   + +     D VT+S +I+G
Sbjct: 104 LSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLING 163

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  + +  +A + F +M  +   PN+ T+ T+I GF +I + +  + LL KM +    PD
Sbjct: 164 LCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPD 223

Query: 206 ASIVSIVVDLLAKNEISLNSLPSFT 230
             I + ++D L K+ +   +L  F+
Sbjct: 224 IVIYNTIIDGLCKDRLVSEALDIFS 248


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCKN  I+ AL ++ +ML KG+KP  V+++ +  GLF+  +   A K+F EM   G
Sbjct: 605 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 664

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY + + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 665 TTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAK 724

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV ++ TYS+MI  L  +   ++A +LF+ +E++  A +      ++   
Sbjct: 725 ELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRML 784

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E +K    L  + E N+  +AS +S++  L ++
Sbjct: 785 LNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSR 821



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           N+++ ML+KGI P+  + N L         +++A  +F++MQ  G+  DT T+   I  L
Sbjct: 409 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 468

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVAD 135
           C+ G + +++  F  +  +        Y CLI G C  G L  A EL    + + +    
Sbjct: 469 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 528

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V  +S +I+ L  +G++ +  D+   M +    PNV+TF +L+ G+  +    +   LL 
Sbjct: 529 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 588

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
            M    + P+  I   +VD   KN
Sbjct: 589 AMASIGIEPNCYIYGTLVDGYCKN 612



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   M+  G +P+VV  N+L  G   +  +E AF L D M   G
Sbjct: 535 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 594

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   +DG CKNG I +++ +FR +     +     YS ++ GL ++ R   A 
Sbjct: 595 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 654

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +        + TY +++ GL  +   D+A+ L   +    V  ++ITF  +I   
Sbjct: 655 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 714

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +  EL   +    ++P+    S+++  L K E
Sbjct: 715 FKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEE 753



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH-NTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G C + E+  A  L SEM++K I P  V + +++   L +  +V     + D M + 
Sbjct: 499 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 558

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   ++G C  G + E+  L   +  +  E +   Y  L+DG CK+GR++ A
Sbjct: 559 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 618

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    +    V YSI++HGL+   +   A  +F +M E+    ++ T+G ++ G
Sbjct: 619 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 678

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             R N   +   LL K+   NV  D    +IV+  +            F V  RQE
Sbjct: 679 LCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM------------FKVGRRQE 722



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y +   ++ A+ ++ +M +KG+ PD V   T+   L  I +++ A   F+ M   
Sbjct: 428 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 487

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEI 119
           GV      Y   I G C +G +V++ EL   +         ++ +S +I+ LCK GR+  
Sbjct: 488 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 547

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             ++   + +     +VVT++ ++ G    G M++A  L   M    + PN   +GTL+ 
Sbjct: 548 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 607

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+ +       + +   M  K V P + + SI++
Sbjct: 608 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 641



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 112/255 (43%), Gaps = 38/255 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K+ E++ A  L+ EM+ +G+ P ++I N++   L ++ ++++A  +  +M   G
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY++ IDGLCK+  + ++  +   +       +   Y+ LI G   SG    ++
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-------------------------- 155
            +F  +    ++  V   +  IH L+  G+ ++A                          
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWV 395

Query: 156 ------------HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
                       H++F  M    +APN   F  LI+ + R     K + +   M+ K ++
Sbjct: 396 CYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI 455

Query: 204 PDASIVSIVVDLLAK 218
           PD    + V+  L +
Sbjct: 456 PDTVTFATVISSLCR 470



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           +I+  C+   ++ AL+ ++ M+  G+ P   ++  L  G     ++ +A +L  EM  +D
Sbjct: 464 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 523

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                 + ++  I+ LCK G + E  ++   +       ++  ++ L++G C  G +E A
Sbjct: 524 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 583

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++    +  +   Y  ++ G   +G++D A  +F DM    V P  + +  ++HG
Sbjct: 584 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 643

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +    +   ++ H+M E           +V+  L +N  +
Sbjct: 644 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCT 685



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 102/217 (47%), Gaps = 5/217 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+K ++ A  +  +M+  G +P+ + +N+L  G         + ++F +M   
Sbjct: 285 LIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 344

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV         FI  L K+G   E+  +F ++ +   + DI +YS     +C    + + 
Sbjct: 345 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCY-WYVTVV 403

Query: 121 LELFHSLPRGVLVADVV----TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
             ++H++   +L   +      ++I+I+     G MDKA  +F DM+   + P+ +TF T
Sbjct: 404 WVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 463

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +I    RI      +   + M +  V P  ++   ++
Sbjct: 464 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLI 500



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC    +E A  L   M S GI+P+  I+ TL  G  +  +++ A  +F +M   G
Sbjct: 570 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 629

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   +  Y+I + GL +      + ++F  +      + I  Y  ++ GLC++   + A 
Sbjct: 630 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 689

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  D++T++I+I  ++  G+  +A +LF  +    + PN+ T+  +I   
Sbjct: 690 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNL 749

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEISLNS 225
           I+     +   L   +++     D+ +++ IV  LL K E++  S
Sbjct: 750 IKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKAS 794



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 85  SVELFRTLRILKCEL----DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
           ++ELF+ +    C       I  Y+ LID   +  R ++ L +   L +  L  D  +YS
Sbjct: 156 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS 215

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I+G   DG++DKAH LFL+M E  V P ++   ++I    ++ E  K   ++ KM + 
Sbjct: 216 -LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274

Query: 201 NVMPDASIVSIVVDLLAKNE 220
            + PD    S+++D L K++
Sbjct: 275 GIAPDLFTYSLIIDGLCKSK 294



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +  +N L      +H+ +    +   + ++G+  D  +Y++ I G  K+G + ++  L
Sbjct: 174 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSL-IYGFVKDGEVDKAHCL 232

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  +        I   + +I  LCK   ++ A  +   +    +  D+ TYS++I GL  
Sbjct: 233 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 292

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              MDKA  +   M E    PN IT+ +LIHG+      ++ + +  +M    V+P
Sbjct: 293 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 348


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCKN  I+ AL ++ +ML KG+KP  V+++ +  GLF+  +   A K+F EM   G
Sbjct: 604 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 663

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY + + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 664 TTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAK 723

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV ++ TYS+MI  L  +   ++A +LF+ +E++  A +      ++   
Sbjct: 724 ELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRML 783

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E +K    L  + E N+  +AS +S++  L ++
Sbjct: 784 LNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSR 820



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K+ E++ A  L+ EM+ +G+ P ++I N++   L ++ ++++A  +  +M   G
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY++ IDGLCK+  + ++  +   +       +   Y+ LI G   SG    ++
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    ++  V   +  IH L+  G+ ++A  +F  M      P++I++ T++HG+
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 395

Query: 182 IRINEP--SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +   + V  + + M  K + P+  + +I+++  A+
Sbjct: 396 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYAR 434



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           N+++ ML+KGI P+  + N L         +++A  +F++MQ  G+  DT T+   I  L
Sbjct: 408 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 467

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVAD 135
           C+ G + +++  F  +  +        Y CLI G C  G L  A EL    + + +    
Sbjct: 468 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 527

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V  +S +I+ L  +G++ +  D+   M +    PNV+TF +L+ G+  +    +   LL 
Sbjct: 528 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 587

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
            M    + P+  I   +VD   KN
Sbjct: 588 AMASIGIEPNCYIYGTLVDGYCKN 611



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   M+  G +P+VV  N+L  G   +  +E AF L D M   G
Sbjct: 534 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 593

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   +DG CKNG I +++ +FR +     +     YS ++ GL ++ R   A 
Sbjct: 594 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 653

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +        + TY +++ GL  +   D+A+ L   +    V  ++ITF  +I   
Sbjct: 654 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 713

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +  EL   +    ++P+    S+++  L K E
Sbjct: 714 FKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEE 752



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH-NTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G C + E+  A  L SEM++K I P  V + +++   L +  +V     + D M + 
Sbjct: 498 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 557

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   ++G C  G + E+  L   +  +  E +   Y  L+DG CK+GR++ A
Sbjct: 558 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 617

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    +    V YSI++HGL+   +   A  +F +M E+    ++ T+G ++ G
Sbjct: 618 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 677

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             R N   +   LL K+   NV  D    +IV+  +            F V  RQE
Sbjct: 678 LCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM------------FKVGRRQE 721



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y +   ++ A+ ++ +M +KG+ PD V   T+   L  I +++ A   F+ M   
Sbjct: 427 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 486

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEI 119
           GV      Y   I G C +G +V++ EL   +         ++ +S +I+ LCK GR+  
Sbjct: 487 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 546

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             ++   + +     +VVT++ ++ G    G M++A  L   M    + PN   +GTL+ 
Sbjct: 547 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 606

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+ +       + +   M  K V P + + SI++
Sbjct: 607 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 640



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           +I+  C+   ++ AL+ ++ M+  G+ P   ++  L  G     ++ +A +L  EM  +D
Sbjct: 463 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 522

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                 + ++  I+ LCK G + E  ++   +       ++  ++ L++G C  G +E A
Sbjct: 523 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 582

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++    +  +   Y  ++ G   +G++D A  +F DM    V P  + +  ++HG
Sbjct: 583 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 642

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +    +   ++ H+M E           +V+  L +N  +
Sbjct: 643 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCT 684



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 102/215 (47%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+K ++ A  +  +M+  G +P+ + +N+L  G         + ++F +M   
Sbjct: 285 LIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 344

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV         FI  L K+G   E+  +F ++ +   + DI +YS ++ G   +    +A
Sbjct: 345 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 404

Query: 121 --LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
               +F+ +    +  +   ++I+I+     G MDKA  +F DM+   + P+ +TF T+I
Sbjct: 405 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 464

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               RI      +   + M +  V P  ++   ++
Sbjct: 465 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLI 499



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC    +E A  L   M S GI+P+  I+ TL  G  +  +++ A  +F +M   G
Sbjct: 569 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 628

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   +  Y+I + GL +      + ++F  +      + I  Y  ++ GLC++   + A 
Sbjct: 629 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 688

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  D++T++I+I  ++  G+  +A +LF  +    + PN+ T+  +I   
Sbjct: 689 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNL 748

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEISLNS 225
           I+     +   L   +++     D+ +++ IV  LL K E++  S
Sbjct: 749 IKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKAS 793



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 85  SVELFRTLRILKCEL----DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
           ++ELF+ +    C       I  Y+ LID   +  R ++ L +   L +  L  D  +YS
Sbjct: 156 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS 215

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I+G   DG++DKAH LFL+M E  V P ++   ++I    ++ E  K   ++ KM + 
Sbjct: 216 -LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274

Query: 201 NVMPDASIVSIVVDLLAKNE 220
            + PD    S+++D L K++
Sbjct: 275 GIAPDLFTYSLIIDGLCKSK 294



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +  +N L      +H+ +    +   + ++G+  D  +Y++ I G  K+G + ++  L
Sbjct: 174 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSL-IYGFVKDGEVDKAHCL 232

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  +        I   + +I  LCK   ++ A  +   +    +  D+ TYS++I GL  
Sbjct: 233 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 292

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              MDKA  +   M E    PN IT+ +LIHG+      ++ + +  +M    V+P
Sbjct: 293 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 348


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N YC+   + GA+ ++  M  KG +P+V  +N +  G   + +V +A  L D+M+  G
Sbjct: 306 VVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECG 365

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY + I G C +G+I  +  L R +       D   Y+ LID LCK+G+++ A 
Sbjct: 366 VEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L    +  + VT++ +I+GL   G+ D A      M     AP+  T+   I   
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENL 485

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + +  + +M +K+V P     +IV+D L K
Sbjct: 486 CKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFK 522



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +C+ ++ E A  + +EM   G+ P  V    +        ++  A ++F+ M+  G
Sbjct: 271 LVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKG 330

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   + G C  G + +++ L   +R    E D+  Y+ LI G C  G +E A 
Sbjct: 331 CEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAF 390

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L AD  TY+++I  L   G++D+A  LF  +E   + PN +TF T+I+G 
Sbjct: 391 RLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +  +       L KM      PD    S  ++ L K + S   L SF     Q++V  S
Sbjct: 451 CKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGL-SFIDEMLQKDVKPS 509

Query: 242 NV 243
            V
Sbjct: 510 TV 511



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 31/243 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+  ++  A    S M+  G +PD    N+L +G     Q++ A  LFD+M   G
Sbjct: 135 LIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRG 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL----------------------------- 92
            + D  +Y   I+G C+ G + E++ELFR L                             
Sbjct: 195 FSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQ 254

Query: 93  --RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
             + L      +AY+ L+D  C+  + E A ++ + +    LV   VT + +++    +G
Sbjct: 255 KMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREG 314

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           +M  A  +F  M+     PNV T+  ++ GF  + +  K + LL +M+E  V PD    +
Sbjct: 315 RMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYN 374

Query: 211 IVV 213
           +++
Sbjct: 375 LLI 377



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 6/217 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C +  IE A  L   M   G+  D   +N L   L +  +V+ A  LFD ++  
Sbjct: 375 LLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYR 434

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  ++ T+   I+GLCK G    +      +    C  D   YS  I+ LCK+      
Sbjct: 435 GIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREG 494

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     + +  +    V Y+I+I  L+ +     A  ++  M     +P+V+T+ T +  
Sbjct: 495 LSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRA 554

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    R++E   V+    +MK+  ++ DA   + ++D
Sbjct: 555 YCNEGRLHEAENVV---MEMKKGGIIVDAMAYNTLID 588



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 74/173 (42%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  + + A     +M+S G  PD   ++     L +           DEM +  
Sbjct: 446 VINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKD 505

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   T  YTI ID L K      +  ++  +  L C  D+  Y+  +   C  GRL  A 
Sbjct: 506 VKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAE 565

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            +   + +G ++ D + Y+ +I G  + G+ D A  +   M   A  PN  TF
Sbjct: 566 NVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTF 618



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 51  FKLFDEMQRDGVAADT-RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
            +LF  M   G  A T  TY   I  LC+   +  +      +       D   ++ LI 
Sbjct: 113 LRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C++ +L++A +LF  +P      D V+Y+ +I G    G++D+A +LF ++E+    P
Sbjct: 173 GYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----P 228

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++ T   L+ G        + + +L KMKE    P     + +VDL  + +
Sbjct: 229 DMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQ 279



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 5/204 (2%)

Query: 16  LNLYSEMLSKGIK-PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           L L++ M   G   P    +N L   L     +  A +    M R G   D  T+   I 
Sbjct: 113 LRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+   +  + +LF  + +     D  +Y+ LI+G C++GR++ ALELF  L +     
Sbjct: 173 GYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----P 228

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ T++ ++ GL +  + ++   +   M+E    P    +  L+  + R  +  +  ++L
Sbjct: 229 DMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKML 288

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
           ++M +  ++P A   + VV+   +
Sbjct: 289 NEMFDNGLVPCAVTCTAVVNAYCR 312



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 84/191 (43%), Gaps = 3/191 (1%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           DV +  T      E+  V   F+LF+ M+++ V +  R Y   ++G  +   + E   L 
Sbjct: 633 DVPLKTTSVWKTIELADV---FELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLV 689

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             ++     L+   Y+ L++  CK      A  L  S+     + ++++Y  ++ G   +
Sbjct: 690 SHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAE 749

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           GQ D+A ++F  +       + I +  +I G IR   P    +++  +++    P     
Sbjct: 750 GQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETY 809

Query: 210 SIVVDLLAKNE 220
           +++ + L+  E
Sbjct: 810 AMLTEELSTRE 820



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N +CK +    A  L   M+  G  P+++ +  L  G     Q +RA ++F  ++   
Sbjct: 707 LVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKE 766

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
              D   + I IDGL + G+     ++   L  +KC+   + Y+ L + L
Sbjct: 767 YNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTEEL 816



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/270 (17%), Positives = 93/270 (34%), Gaps = 51/270 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+   K +    A  ++ +M+S G  PDVV + T         ++  A  +  EM++ 
Sbjct: 515 IVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKG 574

Query: 61  GVAADTRTYTIFIDG--------------------------------------------- 75
           G+  D   Y   IDG                                             
Sbjct: 575 GIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDV 634

Query: 76  ------LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
                 + K   + +  ELF  ++        +AY  +++G  +  RL+    L   +  
Sbjct: 635 PLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKE 694

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             L  +   Y+ +++          A  L   M  +   PN+I++  L+ GF    +  +
Sbjct: 695 DDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADR 754

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             E+   ++ K    D  +  I++D L + 
Sbjct: 755 AKEIFRGLRWKEYNTDEIVWKIIIDGLIRQ 784


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +        E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G++  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L + +    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CK  +++ A      M   G KP+VV +NT+  G      +E A ++ D M+  
Sbjct: 254 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 313

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+ TY   I G+CK G + E+  LF  +  +    +   Y+ LIDG C  G LE A
Sbjct: 314 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 + +  ++  V TY++++H L+ +G+M +A D+  +M +  + P+ IT+  LI+G
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R     K  +L ++M  K + P     + ++ +L++
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 471



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++E A +   EM+ KGI P V  +N L   LF   ++  A  +  EM++ G
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 419

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY I I+G  + G   ++ +L   +     E     Y+ LI  L +  R++ A 
Sbjct: 420 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 479

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  DV+ ++ M+ G   +G +++A  L  +M+  +V P+ +TF TL+ G 
Sbjct: 480 DLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 539

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R  +  +   LL +MK + + PD
Sbjct: 540 CREGKVEEARMLLDEMKRRGIKPD 563



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +E A  L+ +M+  G+ P+ V +NTL  G      +ERAF   DEM + G
Sbjct: 325 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG 384

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + +  L   G + E+ ++ + +R      D   Y+ LI+G  + G  + A 
Sbjct: 385 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAF 444

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +    VTY+ +I+ L    +M +A DLF  + +  V+P+VI F  ++ G 
Sbjct: 445 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 504

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                  +   LL +M  K+V PD
Sbjct: 505 CANGNVERAFMLLKEMDRKSVPPD 528



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY     IEGA  +   M  KGI+PD   + +L  G+ +  ++E A  LFD+M   G
Sbjct: 290 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG 349

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
           +  +  TY   IDG C  G + E    +R   + K  +  +  Y+ L+  L   GR+  A
Sbjct: 350 LVPNAVTYNTLIDGYCNKGDL-ERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 408

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   + +  ++ D +TY+I+I+G    G   KA DL  +M    + P  +T+ +LI+ 
Sbjct: 409 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYV 468

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R N   +  +L  K+ ++ V PD  + + +VD
Sbjct: 469 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 502



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 103/207 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGY +    + A +L++EMLSKGI+P  V + +L   L   ++++ A  LF+++   
Sbjct: 429 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ 488

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D   +   +DG C NG +  +  L + +       D   ++ L+ G C+ G++E A
Sbjct: 489 GVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA 548

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +  D ++Y+ +I G    G +  A  +  +M      P ++T+  LI  
Sbjct: 549 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 608

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
             +  E     ELL +M  K + PD S
Sbjct: 609 LCKNQEGDLAEELLKEMVNKGISPDDS 635



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 109/216 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C+ +  + A   +  M  KGI P +   N +     +++++E A+ L+ EM R 
Sbjct: 184 LLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRL 243

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +++   T+ I ++ LCK G + ++ E    +  L  + ++ +Y+ +I G    G +E A
Sbjct: 244 RISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 303

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +  ++    +  D  TY  +I G+  +G++++A  LF  M E  + PN +T+ TLI G
Sbjct: 304 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDG 363

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +    +  +      +M +K +MP  S  +++V  L
Sbjct: 364 YCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 399



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 99/206 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A ++  EM  KGI PD + +N L  G       ++AF L +EM   G+     TYT  I 
Sbjct: 408 ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIY 467

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            L +   + E+ +LF  +       D+  ++ ++DG C +G +E A  L   + R  +  
Sbjct: 468 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 527

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VT++ ++ G   +G++++A  L  +M+   + P+ I++ TLI G+ R  +      + 
Sbjct: 528 DEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 587

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNE 220
            +M      P     + ++  L KN+
Sbjct: 588 DEMLSIGFNPTLLTYNALIKCLCKNQ 613



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C N  +E A  L  EM  K + PD V  NTL  G     +VE A  L DEM+R G
Sbjct: 500 MVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRG 559

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G  + G I ++  +   +  +     +  Y+ LI  LCK+   ++A 
Sbjct: 560 IKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE 619

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYN 148
           EL   +    +  D  TY  +I G+ N
Sbjct: 620 ELLKEMVNKGISPDDSTYLSLIEGMGN 646



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 52  KLFDEM--QRDGVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           +LFDE+   RD ++  +   + + +   C+     E+ + F  ++       I+  + ++
Sbjct: 162 ELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDML 221

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
               K  R+E+A  L+  + R  + + V T++IM++ L  +G++ KA +    ME     
Sbjct: 222 SLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFK 281

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           PNV+++ T+IHG+           +L  M+ K + PD+     ++  + K
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCK 331



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY +  +I+ A  +  EMLS G  P ++ +N L   L +  + + A +L  EM   G
Sbjct: 570 LISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG 629

Query: 62  VAADTRTYTIFIDGLCKNGYIVE 84
           ++ D  TY   I+G+     +VE
Sbjct: 630 ISPDDSTYLSLIEGMGNVDTLVE 652


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK K+++ A  L +EM + G+ PDVV ++ L  GL ++ +++RA  L +EM ++
Sbjct: 344 IMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+ T    ++ L K G +  ++    T++      D+  Y+ L+DGLCK+GR++ A
Sbjct: 404 GVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEA 463

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +     +       DV +Y+I+I  L   GQ   AH +F +M +  V P+ + + +L+ G
Sbjct: 464 ITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDG 523

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R       +ELL   K     PD  +  +VVD L K
Sbjct: 524 LARNGLEDLALELL---KTSLCKPDFVMHKMVVDGLCK 558



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 109/200 (54%), Gaps = 2/200 (1%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84
           KG +  V  +N     L + +  + A++ F +MQR G   D  TY+I + GLCK G + +
Sbjct: 32  KGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDK 91

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR-GVLVADVVTYSIMI 143
           + EL   LR    +L++  YS +IDG CK+ R++ ALE+F ++   G  V DVVT++ ++
Sbjct: 92  AKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLL 151

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            GL +  +M +A  LF  M +    PNVI++ TL+ G  +     +   L  +M EK+ +
Sbjct: 152 KGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 204 PD-ASIVSIVVDLLAKNEIS 222
           PD  +  S V  L   N ++
Sbjct: 212 PDLVAYTSFVTGLCKANRVA 231



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A   + +M  +G  PD   ++ +  GL +  ++++A +L  +++  GV  +  TY++ ID
Sbjct: 57  AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116

Query: 75  GLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
           G CK   + +++E+F+T+     C  D+  ++ L+ GLC   R+  A  LF  + +    
Sbjct: 117 GCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            +V++YS ++ GL   G++D+A  L+ +M E +  P+++ + + + G  + N  ++  + 
Sbjct: 177 PNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDC 236

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKN 219
             KM  K    DA   S V+ +L K 
Sbjct: 237 CRKMVTKGSKADAVAFSTVIGILCKK 262



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 21/239 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I+G CK   ++ AL ++  M + G   PDVV  N+L  GL    ++  AF LF+ M +
Sbjct: 113 VVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAK 172

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  +Y+  +DGLCK G + E+  L+  +    C  D+ AY+  + GLCK+ R+  
Sbjct: 173 AGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAE 232

Query: 120 ALELFHSLPRGVLVADVVTYSI-----------------MIHGLYNDGQMDKAHDLFLDM 162
           A +    +      AD V +S                  MI  L   G +D+A   F +M
Sbjct: 233 ACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEM 292

Query: 163 EENAVAPNVITFGTLIHGFIRINE-PSKVI--ELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 P+   F TLIH   +    P  V+  + +  MKE    P+    +I+VD L K
Sbjct: 293 ISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCK 351



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR- 59
           I++ G CK  E++ A  L  ++   G+K +V+ ++ +  G  +  +V+ A ++F  M   
Sbjct: 78  IVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAG 137

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  T+   + GLC    + E+  LF  +    CE ++ +YS L+DGLCK+GRL+ 
Sbjct: 138 GGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           A  L+  +     V D+V Y+  + GL    ++ +A D    M       + + F T+I
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVI 256



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 12/244 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI+  CK+K +   + L+  M S       P++  +N +   L +  Q++ A +L +EM 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G++ D  TY+  +DGLCK G +  + +L   +       D    + +++ L K+G+++
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            AL    ++       D+VTY+ ++ GL   G++D+A      M      P+V ++  +I
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-------EISLNSL--PSF 229
               R  + +    +  +M ++ V+PD  +   ++D LA+N       E+   SL  P F
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDF 546

Query: 230 TVHE 233
            +H+
Sbjct: 547 VMHK 550



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C++  ++ A   + EM+S+   P   + NTL   + +  ++     LF  M+   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 62  ---VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
                 +  TY I +D LCK   + E+ EL   +       D+  YS L+DGLCK G+L+
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L   + +  +  D  T + +++ L   G++D A      M+     P+++T+ TL+
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            G  +     + I  L KM      PD    +I++  L ++
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRS 492



 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   I+ A+   ++M++    PDV  +  +   L    Q   A  +F EM + G
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT  Y   +DGL +NG    ++EL +T     C+ D   +  ++DGLCK+G+ E A 
Sbjct: 510 VLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVVDGLCKAGKAEDAC 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           E+   +      AD  TY  ++ GL   G++DKA  L  D  E 
Sbjct: 567 EVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASET 610


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 114/213 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GY +  E   A     EML  G+ P+ V+   L     +  +V  A   F  M   G
Sbjct: 531 FISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQG 590

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +TYT+ ++GL KNG + ++ E+F  +R      D+ +Y  LIDG  K G ++ A 
Sbjct: 591 ILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKAS 650

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L ++V+ Y++++ G    G+++KA +L  +M      PN +T+ T+I G+
Sbjct: 651 SIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGY 710

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  + ++  +L  +MK K ++PD+ + + +VD
Sbjct: 711 CKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVD 743



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G+C++ EIE A  L  EM  KG  P+ V + T+  G  +   +  AF+LFDEM+  
Sbjct: 670 MLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLK 729

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+  YT  +DG C+   +  ++ +F T     C      ++ LI+ + K G+ E+ 
Sbjct: 730 GLVPDSFVYTTLVDGCCRLNDVERAITIFETNE-KGCASSSAPFNALINWVFKFGKTELT 788

Query: 121 LELFHSLPRGVL----VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            ++ + L  G        + VTY+IMI  L  +G ++ A +LF  M++  + P VIT+ +
Sbjct: 789 TDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTS 848

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           L++G+ ++   S++  +  ++    + PD  + S++++   K  ++  +L
Sbjct: 849 LLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKAL 898



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K K+++ A +   EM+  G KPD   +     G  E  +   A K   EM   G
Sbjct: 496 LIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECG 555

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +    T  I+  CK G ++E+   FR++       D + Y+ L++GL K+G++  A 
Sbjct: 556 VIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAE 615

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+FH +    +  DV +Y  +I G    G M KA  +F +M +  +  NVI +  L+ GF
Sbjct: 616 EIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGF 675

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  E  K  ELL +M  K   P+A     ++D   K+
Sbjct: 676 CRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKS 713



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  KN ++  A  ++ EM  KGI PDV  + TL  G  ++  +++A  +FDEM + 
Sbjct: 600 VLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQA 659

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ++   Y + + G C++G I ++ EL   +       +   Y  +IDG CKSG L  A
Sbjct: 660 GLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEA 719

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +    LV D   Y+ ++ G      +++A  +F +  E   A +   F  LI+ 
Sbjct: 720 FQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKGCASSSAPFNALINW 778

Query: 181 FIRINEPSKVIELLHKMK----EKNVMPDASIVSIVVDLLAK 218
             +  +     ++++++     +K   P+    +I++D L K
Sbjct: 779 VFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCK 820



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN YCK  ++  A + +  M+ +GI  D   +  L  GL +  +V  A ++F EM+  G
Sbjct: 566 LINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKG 625

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  +Y   IDG  K G + ++  +F  +       ++  Y+ L+ G C+SG +E A 
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       + VTY  +I G    G + +A  LF +M+   + P+   + TL+ G 
Sbjct: 686 ELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGC 745

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R+N+  + I +     EK     ++  + +++ + K
Sbjct: 746 CRLNDVERAITIFE-TNEKGCASSSAPFNALINWVFK 781



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 101/205 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK K +E A +L  EM S G+  D V ++ L  GL +    + A  L  EM   
Sbjct: 285 LLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSH 344

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D   Y  FI  + K G + ++  LF  +         +AY+ LI+G  +   +   
Sbjct: 345 GFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKG 404

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  +V    TY   + G+ + G +D A+++  +M  +   PNV+ + TLI  
Sbjct: 405 YELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKT 464

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F++ +     + +L +M+E+ + PD
Sbjct: 465 FLQKSRFGDAVRVLKEMREQGIAPD 489



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 101/222 (45%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   +E A  L+  M++ G+ P    + +L  G F    V + ++L  E+++  +     
Sbjct: 362 KEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPY 421

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   + G+C +G +  +  + + +    C  ++  Y+ LI    +  R   A+ +   +
Sbjct: 422 TYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEM 481

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  D   Y+ +I GL    +MD+A    L+M EN   P+  T+G  I G+I   E 
Sbjct: 482 REQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEF 541

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           +   + + +M E  V+P+  + + +++   K    + +  +F
Sbjct: 542 ASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAF 583



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 89/206 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K +  + A  L  EM+S G   D ++++     + +   +E+A  LFD M   
Sbjct: 320 ILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITF 379

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV    R Y   I+G  +   + +  EL   ++     +    Y   + G+C SG L+ A
Sbjct: 380 GVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGA 439

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       +VV Y+ +I       +   A  +  +M E  +AP+   + +LI G
Sbjct: 440 YNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIG 499

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             +  +  +    L +M E    PDA
Sbjct: 500 LSKAKKMDEARSFLLEMVENGFKPDA 525



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 14/203 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  +C++  ++             +  DV++     +G   ++ V+ A +L   M   
Sbjct: 229 MLIGAHCRDGNVQ-------------LAKDVLLKTEEELGTATLN-VDEALELKKSMSCK 274

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+    ++Y + IDGLCK   + ++  L   +  +    D  AYS LIDGL K    + A
Sbjct: 275 GLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAA 334

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L H +       D + Y   I  +  +G M+KA  LF  M    V P    + +LI G
Sbjct: 335 NGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEG 394

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
           F R     K  ELL ++K++N++
Sbjct: 395 FFREKNVRKGYELLVEIKKRNIV 417



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 35/217 (16%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           + G C + +++GA N+  EM + G +P+VVI+ TL     +  +   A ++  EM+  G+
Sbjct: 427 VKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGI 486

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           A DT          C                          Y+ LI GL K+ +++ A  
Sbjct: 487 APDT---------FC--------------------------YNSLIIGLSKAKKMDEARS 511

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
               +       D  TY   I G    G+   A     +M E  V PN +    LI+ + 
Sbjct: 512 FLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYC 571

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  +  +       M E+ ++ DA   +++++ L KN
Sbjct: 572 KKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKN 608



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK   +E A  L+  M    + P V+ + +L  G  ++ +    F +FDE+   
Sbjct: 813 IMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAA 872

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-----CELDIQAYSCLIDGLCKSG 115
           G+  D   Y++ I+   K G   +++ L   +         C+L I     L+ G  K G
Sbjct: 873 GIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 932

Query: 116 RLEIALELFHSLPRGVLVADVVT 138
            +E+A ++  ++ R   + D  T
Sbjct: 933 EMEVAEKVVENMVRLKYIPDSST 955



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 29/190 (15%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHS 126
           + I IDG  + G++ E+V +F + + L  +L      C  L+D L K  RL++  +++  
Sbjct: 155 FGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYKG 214

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE---------------------N 165
           +    +V DV +Y ++I     DG +  A D+ L  EE                      
Sbjct: 215 MVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCK 274

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD--LLAKNEISL 223
            + P+  ++  LI G  +         LL +M    +  D    SI++D  L  +N  + 
Sbjct: 275 GLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAA 334

Query: 224 NSLPSFTVHE 233
           N L    VHE
Sbjct: 335 NGL----VHE 340


>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14770, mitochondrial-like, partial [Cucumis
           sativus]
          Length = 697

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 112/203 (55%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E AL LY EM+  GI PDVV   ++  GL +  ++     L  EM + G+  +  +YTI
Sbjct: 5   LEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTI 64

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            +D L K G + E++     + +     D+ A + LIDGL KSG+++ A  LF +L +  
Sbjct: 65  LLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLN 124

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           LV + +TYS +I G    G ++ A     +MEE    PNVIT+ +LI+G+++        
Sbjct: 125 LVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAF 184

Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
           ++L KM  KN MP+    +I++D
Sbjct: 185 KVLRKMVHKNAMPNICTYAILLD 207



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 36/252 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +I GA +   EM  K   P+V+ +++L  G  +   +  AFK+  +M    
Sbjct: 135 LIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKN 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-----------------------RTLRILKCE 98
              +  TY I +DG  K G+   +++L+                       R+ R+ + E
Sbjct: 195 AMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAE 254

Query: 99  ------------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+  Y+ L+DG  KSG++  AL L   +    +V D+VT++++I+ L
Sbjct: 255 ELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCL 314

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G+ D    ++  M E  ++P++ T+ T+++G  +    +  +EL ++MK + ++P+A
Sbjct: 315 FKLGKSD-TESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNA 373

Query: 207 SIVSIVVDLLAK 218
              +I+++ L +
Sbjct: 374 ITCNIMINGLCE 385



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  K+ +I+ A  L+  +    + P+ + ++ L  G  ++  +  A     EM+  
Sbjct: 99  VLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEK 158

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY+  I+G  K G + ++ ++ R +       +I  Y+ L+DG  K+G  +IA
Sbjct: 159 DCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIA 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L+  + +G L  +V      ++ +   G+M++A +L   M    + P+++ +  L+ G
Sbjct: 219 LDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDG 278

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F++  + S  + L  +M  KNV+ D    +++++ L K
Sbjct: 279 FLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFK 316



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G  K    + AL+LYS+M   G+K +V I +     +    ++E A +L  +M   
Sbjct: 204 ILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASG 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  +DG  K+G +  ++ L + +       DI  ++ LI+ L K G+ +  
Sbjct: 264 GLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGKSDTE 323

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++ ++    L  D+ TY+ M++G +  G    A +L+ +M+   + PN IT   +I+G
Sbjct: 324 -SIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMING 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                     I++L +M    + P ++   I++++ +K+ 
Sbjct: 383 LCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSR 422



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 95/202 (47%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++YS M   G+ PD+  +NT+  G F+      A +L++EM+   +  +  T  I I+GL
Sbjct: 324 SIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGL 383

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C+ G +  ++++ + + ++        Y  L++   KS R +  L+    L    L  D 
Sbjct: 384 CEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDK 443

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
             Y+I+I  L   G   KA  +  DMEE  +  +  T+  LIHG+   +   +       
Sbjct: 444 DVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYST 503

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           M  + V PD    ++++  L+K
Sbjct: 504 MLSERVSPDIETYNLLLGGLSK 525



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 6/208 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG  K      AL L++EM S+ + P+ +  N +  GL E  ++E A  +  EM   G
Sbjct: 344 MLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMG 403

Query: 62  VAADTRTYTIFIDGLCKN---GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           +   + TY I ++   K+     I+++ EL   +++   ++D   Y+ LI  LCK G   
Sbjct: 404 LYPTSTTYRILLNISSKSRRADTILQTHELLVNMQL---KVDKDVYNILISNLCKLGMTR 460

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +    ++AD  TY+ +IHG      + +A   +  M    V+P++ T+  L+
Sbjct: 461 KATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLL 520

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDA 206
            G  +     +  +LL ++K++ ++P+A
Sbjct: 521 GGLSKAGLIHEADDLLSEIKKRGLVPNA 548



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 101/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING C+   +E A+++  EM+  G+ P    +  L     +  + +   +  + +   
Sbjct: 378 IMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNM 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y I I  LCK G   ++  + + +       D   Y+ LI G C S  L+ A
Sbjct: 438 QLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              + ++    +  D+ TY++++ GL   G + +A DL  ++++  + PN  T+ TL+ G
Sbjct: 498 FMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCG 557

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++    + + +  +M  K  +P     ++++   +K
Sbjct: 558 HCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSK 595



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 101/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N   K++  +  L  +  +++  +K D  ++N L   L ++    +A  +  +M+  
Sbjct: 413 ILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEER 472

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ADT TY   I G C + ++  +   + T+   +   DI+ Y+ L+ GL K+G +  A
Sbjct: 473 GIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEA 532

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + +  LV +  TY  ++ G        +   ++ +M      P    +  LI  
Sbjct: 533 DDLLSEIKKRGLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGY 592

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F ++ +  +  EL+++M+ K V P  +   I++
Sbjct: 593 FSKMGKMKQAKELMNEMQTKGVSPTCTTYDILI 625



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK      A  +  +M  +GI  D   +N L  G      ++RAF  +  M  +
Sbjct: 448 ILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSE 507

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ D  TY + + GL K G I E+ +L   ++      +   Y  L+ G CK    +  
Sbjct: 508 RVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCGHCKVRNTKEC 567

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L ++  +     +     Y+++I      G+M +A +L  +M+   V+P   T+  LI G
Sbjct: 568 LRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPTCTTYDILICG 627

Query: 181 F------------IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +            ++I+  ++   L  +M ++  +P  S  + +    A
Sbjct: 628 WCNLLKMPDLGSTLKISYRAEAKRLFIEMNDRGFVPCESTQACISSTFA 676


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 115/213 (53%), Gaps = 1/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LING CK  E++    L+ E+ S+    PD+V + ++  G  +  +++ A  LF+EM R 
Sbjct: 219 LINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRS 278

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ + IDG  K G I E+  ++R +    C  D+  ++ LIDG C++G++   
Sbjct: 279 GIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHG 338

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+ ++ +    +   V TY+++I+ L  + ++++A D    ++ +++ P    +  +I G
Sbjct: 339 LKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDG 398

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +     +   +L +M+EK   PD    +I++
Sbjct: 399 FCKAGNVDEGNVILKEMEEKRCDPDKVTFTILI 431



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-R 59
           ILI G C+   ++ A  ++ +M S G  PDVV +NTL  GL + ++V+R  +LF E+Q R
Sbjct: 183 ILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSR 242

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
              + D  TYT  I G CK+G + E+  LF  +     + ++  ++ LIDG  K G +  
Sbjct: 243 SDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAE 302

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  ++  +      ADVVT++ +I G    GQ++     +  M+   V+P V T+  LI+
Sbjct: 303 AEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLIN 362

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + N  ++  + L ++K  +++P   + + V+D   K
Sbjct: 363 ALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCK 401



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 1/198 (0%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L +E+  K ++ +  ++N L   L + +QV  A  LF E        DT T+ I I GLC
Sbjct: 130 LLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLC 189

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADV 136
           + G +  + E+F+ +    C  D+  Y+ LI+GLCK+  ++   ELF  +  R     D+
Sbjct: 190 RVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDI 249

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VTY+ +I G    G+M +A +LF +M  + + PNVITF  LI GF +I   ++   +  K
Sbjct: 250 VTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRK 309

Query: 197 MKEKNVMPDASIVSIVVD 214
           M   +   D    + ++D
Sbjct: 310 MAYFDCSADVVTFTSLID 327



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK+ +++ A NL+ EM+  GI+P+V+  N L  G  +I  +  A  ++ +M    
Sbjct: 255 IISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFD 314

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +AD  T+T  IDG C+ G +   ++ +  ++       +  Y+ LI+ LCK  RL  A 
Sbjct: 315 CSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEAR 374

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +    ++     Y+ +I G    G +D+ + +  +MEE    P+ +TF  LI G 
Sbjct: 375 DFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGH 434

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + I + ++M      PD   V+ ++  L K
Sbjct: 435 CVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLK 471



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++  M S G  PD  +   L   + +    +   KL  E+Q   V  ++  Y   +  L 
Sbjct: 95  VFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLV 154

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K   + E++ LF+   +++   D   ++ LI GLC+ G ++ A E+F  +     + DVV
Sbjct: 155 KQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVV 214

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           TY+ +I+GL    ++ +  +LF +++  +  +P+++T+ ++I GF +  +  +   L  +
Sbjct: 215 TYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEE 274

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           M    + P+    ++++D   K
Sbjct: 275 MMRSGIQPNVITFNVLIDGFGK 296



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 74/157 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+  ++   L  ++ M ++ + P V  +  L   L + +++  A     +++   
Sbjct: 325 LIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSS 384

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   IDG CK G + E   + + +   +C+ D   ++ LI G C  GR+  A+
Sbjct: 385 IIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAI 444

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
            +F+ +       D +T + +I  L   G  ++A+ +
Sbjct: 445 NIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRI 481



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  CK   +  A +   ++ +  I P   ++N +  G  +   V+    +  EM+  
Sbjct: 359 VLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEK 418

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
               D  T+TI I G C  G + E++ +F  +   +C  D    + LI  L K+G
Sbjct: 419 RCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAG 473


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CK  +++ A      M   G KP+VV +NT+  G      +E A ++ D M+  
Sbjct: 232 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 291

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+ TY   I G+CK G + E+  LF  +  +    +   Y+ LIDG C  G LE A
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 + +  ++  V TY++++H L+ +G+M +A D+  +M +  + P+ IT+  LI+G
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R     K  +L ++M  K + P     + ++ +L++
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 449



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++E A +   EM+ KGI P V  +N L   LF   ++  A  +  EM++ G
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 397

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY I I+G  + G   ++ +L   +     E     Y+ LI  L +  R++ A 
Sbjct: 398 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 457

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    +  DV+ ++ M+ G   +G +++A  L  +M+  +V P+ +TF TL+ G 
Sbjct: 458 DLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 517

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R  +  +   LL +MK + + PD
Sbjct: 518 CREGKVEEARMLLDEMKRRGIKPD 541



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +E A  L+ +M+  G+ P+ V +NTL  G      +ERAF   DEM + G
Sbjct: 303 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG 362

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + +  L   G + E+ ++ + +R      D   Y+ LI+G  + G  + A 
Sbjct: 363 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAF 422

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +    VTY+ +I+ L    +M +A DLF  + +  V+P+VI F  ++ G 
Sbjct: 423 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 482

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                  +   LL +M  K+V PD
Sbjct: 483 CANGNVERAFMLLKEMDRKSVPPD 506



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY     IEGA  +   M  KGI+PD   + +L  G+ +  ++E A  LFD+M   G
Sbjct: 268 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
           +  +  TY   IDG C  G + E    +R   + K  +  +  Y+ L+  L   GR+  A
Sbjct: 328 LVPNAVTYNTLIDGYCNKGDL-ERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 386

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   + +  ++ D +TY+I+I+G    G   KA DL  +M    + P  +T+ +LI+ 
Sbjct: 387 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYV 446

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R N   +  +L  K+ ++ V PD  + + +VD
Sbjct: 447 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 480



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 103/207 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILINGY +    + A +L++EMLSKGI+P  V + +L   L   ++++ A  LF+++   
Sbjct: 407 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ 466

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D   +   +DG C NG +  +  L + +       D   ++ L+ G C+ G++E A
Sbjct: 467 GVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA 526

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  +  D ++Y+ +I G    G +  A  +  +M      P ++T+  LI  
Sbjct: 527 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 586

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS 207
             +  E     ELL +M  K + PD S
Sbjct: 587 LCKNQEGDLAEELLKEMVNKGISPDDS 613



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 35/249 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C+ +  + A   +  M  KGI P +   N +     +++++E A+ L+ EM R 
Sbjct: 162 LLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRL 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVE--------------------------------- 87
            +++   T+ I ++ LCK G + ++ E                                 
Sbjct: 222 RISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 281

Query: 88  --LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             +   +R+   E D   Y  LI G+CK GRLE A  LF  +    LV + VTY+ +I G
Sbjct: 282 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDG 341

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             N G +++A     +M +  + P+V T+  L+H         +  +++ +M++K ++PD
Sbjct: 342 YCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPD 401

Query: 206 ASIVSIVVD 214
           A   +I+++
Sbjct: 402 AITYNILIN 410



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 99/206 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A ++  EM  KGI PD + +N L  G       ++AF L +EM   G+     TYT  I 
Sbjct: 386 ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIY 445

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            L +   + E+ +LF  +       D+  ++ ++DG C +G +E A  L   + R  +  
Sbjct: 446 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 505

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VT++ ++ G   +G++++A  L  +M+   + P+ I++ TLI G+ R  +      + 
Sbjct: 506 DEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 565

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNE 220
            +M      P     + ++  L KN+
Sbjct: 566 DEMLSIGFNPTLLTYNALIKCLCKNQ 591



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C N  +E A  L  EM  K + PD V  NTL  G     +VE A  L DEM+R G
Sbjct: 478 MVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRG 537

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G  + G I ++  +   +  +     +  Y+ LI  LCK+   ++A 
Sbjct: 538 IKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE 597

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYN 148
           EL   +    +  D  TY  +I G+ N
Sbjct: 598 ELLKEMVNKGISPDDSTYLSLIEGMGN 624



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 52  KLFDEM--QRDGVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           +LFDE+   RD ++  +   + + +   C+     E+ + F  ++       I+  + ++
Sbjct: 140 ELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDML 199

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
               K  R+E+A  L+  + R  + + V T++IM++ L  +G++ KA +    ME     
Sbjct: 200 SLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFK 259

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           PNV+++ T+IHG+           +L  M+ K + PD+     ++  + K
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCK 309



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY +  +I+ A  +  EMLS G  P ++ +N L   L +  + + A +L  EM   G
Sbjct: 548 LISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG 607

Query: 62  VAADTRTYTIFIDGLCKNGYIVE 84
           ++ D  TY   I+G+     +VE
Sbjct: 608 ISPDDSTYLSLIEGMGNVDTLVE 630


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK      AL +++EML  G+ P V+ + +L   + +   + RA +  D+M+  G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + RTYT  +DG  + GY+ E+  + R +        +  Y+ LI+G C +G++E A+
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  DVV+YS ++ G      +D+A  +  +M E  + P+ IT+ +LI GF
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                  +  +L  +M    + PD
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPD 519



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C    I+ AL L+ +M +KG  P+VV +NTL  G  ++ +++  FKL   M   
Sbjct: 210 ILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +Y + I+GLC+ G + E   +   +      LD   Y+ LI G CK G    A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   + R  L   V+TY+ +IH +   G M++A +    M    + PN  T+ TL+ G
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +    ++   +L +M +    P
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSP 413



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           + I  A N++ EML   + P+V  +N L  G      ++ A  LFD+M+  G   +  TY
Sbjct: 184 RNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTY 243

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EIALELFHSLP 128
              IDG CK   I +  +L R++ +   E ++ +Y+ +I+GLC+ GR+ E++  L     
Sbjct: 244 NTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           RG  + D VTY+ +I G   +G   +A  +  +M  + + P+VIT+ +LIH   +    +
Sbjct: 304 RGYSL-DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMN 362

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVD 214
           + +E L +M+ + + P+    + +VD
Sbjct: 363 RAMEFLDQMRVRGLCPNERTYTTLVD 388



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C   ++E A+ +  +M  KG+ PDVV ++T+  G    + V+ A ++  EM   G
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY+  I G C+     E+ +L+  +  +    D   Y+ LI+  C  G LE AL
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    ++ DVVTYS++I+GL    +  +A  L L +      P+ +T+ TLI   
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC 600

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             I E   V+ L+     K +M +A    +   +L KN
Sbjct: 601 SNI-EFKSVVSLIKGFCMKGMMTEAD--QVFESMLGKN 635



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+   ++    + +EM  +G   D V +NTL  G  +     +A  +  EM R 
Sbjct: 280 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT  I  +CK G +  ++E    +R+     + + Y+ L+DG  + G +  A
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +        VVTY+ +I+G    G+M+ A  +  DM+E  ++P+V+++ T++ G
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R  +  + + +  +M EK + PD    S ++
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 103/203 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ +   +  A  +  EM   G  P VV +N L  G     ++E A  + ++M+  G
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  +Y+  + G C++  + E++ + R +     + D   YS LI G C+  R + A 
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  + R  L  D  TY+ +I+    +G ++KA  L  +M E  V P+V+T+  LI+G 
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            + +   +   LL K+  +  +P
Sbjct: 566 NKQSRTREAKRLLLKLFYEESVP 588



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 53/243 (21%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+C++ +++ AL +  EM+ KGIKPD + +++L  G  E  + + A  L++EM R G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           +  D  TYT  I+  C  G + ++++L   +       D+  YS LI+GL K  R   A 
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575

Query: 121 ---LELFH--------------------------SLPRGVLVADVVT------------- 138
              L+LF+                          SL +G  +  ++T             
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKN 635

Query: 139 -------YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI---HGFIRINEPS 188
                  Y+IMIHG    G + KA+ L+ +M ++    + +T   L+   H   ++NE +
Sbjct: 636 HKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELN 695

Query: 189 KVI 191
            VI
Sbjct: 696 SVI 698



 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 10/138 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C    +  A  ++  ML K  KPD   +N +  G      + +A+ L+ EM + G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670

Query: 62  VAADTRTYTIFIDGLCKNGYIVE-SVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEI 119
               T T    +  L K G + E +  +   LR   CEL + +    L++   + G +++
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVIVHVLR--SCELSEAEQAKVLVEINHREGNMDV 728

Query: 120 ALELFHS------LPRGV 131
            L++         LP G+
Sbjct: 729 VLDVLAEMAKDGFLPNGI 746


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 121/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  + +++  +   G++P VV  NTL  G      +++ F+L   M   
Sbjct: 141 ILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + E+ ELF  +       +   ++ LIDG CK+G++++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A +L  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M E+N+  D    + ++  L +   S+++
Sbjct: 321 SCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LF EM   G
Sbjct: 177 LMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAR 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    L  D +TY+ +I G   DG ++ A +    M E  +  + + +  LI G 
Sbjct: 297 NLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD+   +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKK 394



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN +++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L +EM   G
Sbjct: 247 LIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK+G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    +    +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 FEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGHVP 414



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 84/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK G I  S  +F  +R       
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD+A++LF 
Sbjct: 171 VVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFX 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +  +    +E+  +M  +++ PD
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPD 275



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + ++  +F ++ +  L   VV+++ +++G    G 
Sbjct: 127 ILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGD 186

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +DK   L   M  + V P+V T+  LI+G  + ++  +  EL  +M +K ++P+    + 
Sbjct: 187 LDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTT 246

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 247 LIDGHCKN 254



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G++  +  +F  + +  + P+V++F TL++G+IR
Sbjct: 124 YKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  K   L   M    V PD    S++++ L K
Sbjct: 184 QGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCK 218


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 120/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK  ++   L  Y EM   G+KP+VV ++TL     +   +++A K + +M+R G
Sbjct: 206 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 265

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID  CK G + ++  L   +  +  E ++  Y+ LIDGLC + R++ A 
Sbjct: 266 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 325

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    ++ ++ +Y+ +IHG      MD+A +L  +++   + P+++ +GT I G 
Sbjct: 326 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 385

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + +      ++++MKE  +  ++ I + ++D   K+
Sbjct: 386 CSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 423



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK  ++E A  L+ EM  +G+ PD V +N++  G  ++ +++     F+EM+  
Sbjct: 135 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 194

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   I+  CK G +   +E +R ++    + ++ +YS L+D  CK G ++ A
Sbjct: 195 CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQA 254

Query: 121 LELFHSLPRGVLVAD-----------------------------------VVTYSIMIHG 145
           ++ +  + R  LV +                                   VVTY+ +I G
Sbjct: 255 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 314

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L +  +M +A +LF  M+   V PN+ ++  LIHGF++     + +ELL+++K + + PD
Sbjct: 315 LCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 374



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + K  + +     + +M+  G +P V  +N +   + +   VE A  LF+EM+  G
Sbjct: 101 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 160

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   IDG  K G + ++V  F  ++ + CE D+  Y+ LI+  CK G+L I L
Sbjct: 161 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 220

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E +  +    L  +VV+YS ++     +G M +A   ++DM    + PN  T+ +LI   
Sbjct: 221 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 280

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +I   S    L ++M +  V  +    + ++D L   E
Sbjct: 281 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAE 319



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 10/217 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K K ++ AL L +E+  +GIKPD++++ T   GL  + ++E A  + +EM+  G
Sbjct: 346 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 405

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A++  YT  +D   K+G   E + L   ++ L  E+ +  +  LIDGLCK+  +  A+
Sbjct: 406 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 465

Query: 122 ELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + F+ +     L A+   ++ MI GL  D Q++ A  LF  M +  + P+   + +L+ G
Sbjct: 466 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 525

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +     + + L  KM E         + + +DLLA
Sbjct: 526 NFKQGNVLEALALRDKMAE---------IGMKLDLLA 553



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 118/228 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +CK   ++ A+  Y +M   G+ P+   + +L     +I  +  AF+L +EM + G
Sbjct: 241 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 300

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  IDGLC    + E+ ELF  +       ++ +Y+ LI G  K+  ++ AL
Sbjct: 301 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 360

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + L    +  D++ Y   I GL +  +++ A  +  +M+E  +  N + + TL+  +
Sbjct: 361 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 420

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   P++ + LL +MKE ++        +++D L KN++   ++  F
Sbjct: 421 FKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 468



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 88/190 (46%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P   + + LF  L ++  +E A + F +M+R  V   TR+    +    K G   +    
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F+ +        +  Y+ +ID +CK G +E A  LF  +    LV D VTY+ MI G   
Sbjct: 118 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 177

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++D     F +M++    P+VIT+  LI+ F +  +    +E   +MK   + P+   
Sbjct: 178 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 237

Query: 209 VSIVVDLLAK 218
            S +VD   K
Sbjct: 238 YSTLVDAFCK 247



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 95/207 (45%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A+  +S+M    + P     N L     ++ + +   + F +M   G      TY I
Sbjct: 76  LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 135

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            ID +CK G +  +  LF  ++      D   Y+ +IDG  K GRL+  +  F  +    
Sbjct: 136 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 195

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+     G++    + + +M+ N + PNV+++ TL+  F +     + I
Sbjct: 196 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 255

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    M+   ++P+    + ++D   K
Sbjct: 256 KFYVDMRRVGLVPNEYTYTSLIDANCK 282



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  A  L +EML  G++ +VV +  L  GL +  +++ A +LF +M   G
Sbjct: 276 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 335

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   I G  K   +  ++EL   L+    + D+  Y   I GLC   ++E A 
Sbjct: 336 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 395

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    + A+ + Y+ ++   +  G   +   L  +M+E  +   V+TF  LI G 
Sbjct: 396 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 455

Query: 182 IRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKN 219
            +    SK ++  +++     +  +A+I + ++D L K+
Sbjct: 456 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 494



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 13/208 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI+G CKNK +  A++ ++ + +  G++ +  I   +  GL + +QVE A  LF++M +
Sbjct: 450 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 509

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT  +DG  K G ++E++ L   +  +  +LD+ AY+ L+ GL    +L+ 
Sbjct: 510 KGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQK 569

Query: 120 ALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKA---------HDLFLDMEENAVAP 169
           A      +   G+   +V+  S++    Y  G +D+A         H L     +NA+ P
Sbjct: 570 ARSFLEEMIGEGIHPDEVLCISVL-KKHYELGCIDEAVELQSYLMKHQLLTSDNDNAL-P 627

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKM 197
           N+ +   L+       + +++  L  K+
Sbjct: 628 NIYSDQNLVSSREHEEQETRISNLQPKL 655


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G   +  +++ FKL + M   
Sbjct: 141 ILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + E+ +LF  +       +   ++ LIDG CK+G+++ A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E +  +     + D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 METYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDL 215
             +  +     EL   M KE   + D +  +++  L
Sbjct: 321 NCKEGDLDSAFELRETMVKESIRLDDVAYTALISGL 356



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L + M + G++PDV  ++ L  GL +  ++  A  LF+EM   G
Sbjct: 177 LMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
           +  +  T+T  IDG CKNG +  ++E ++ + + +C L D+  Y+ LI GLCK G L+ A
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKVDSAMETYKQM-LSQCFLPDLITYNTLIYGLCKKGDLKQA 295

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L  D +TY+ +I G   +G +D A +L   M + ++  + + +  LI G
Sbjct: 296 QDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISG 355

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +    +   ++L +M    + PD    +++++   K E
Sbjct: 356 LCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKE 395



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 93/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN +++ A+  Y +MLS+   PD++ +NTL  GL +   +++A  L DEM+  G
Sbjct: 247 LIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + EL  T+      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+       +  A  L  +M+     P V+T
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 107/204 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  ++  A +L++EML KG+ P+ V   TL  G  +  +V+ A + + +M   
Sbjct: 211 VLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   I GLCK G + ++ +L   +R+   + D   Y+ LIDG CK G L+ A
Sbjct: 271 CFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL  ++ +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 FELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+ +  +P
Sbjct: 391 FCKKEDVKTAAKLLKEMQRQGHVP 414



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 97/204 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y ++  +  A+  +       ++        +   L ++   +  +  + E+   G
Sbjct: 72  LINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECG 131

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A    + I +   CK G I  +  +F ++        + +++ L++G  + G L+   
Sbjct: 132 YPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGF 191

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L +++    +  DV TYS++I+GL  + +M++A+DLF +M +  + PN +TF TLI G 
Sbjct: 192 KLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGH 251

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +    +E   +M  +  +PD
Sbjct: 252 CKNGKVDSAMETYKQMLSQCFLPD 275



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 78/155 (50%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I+   ++G++ +++E FR  R  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G++  A  +F  + +  + P+V++F TL++G+IR
Sbjct: 124 YKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +  +L + M    V PD    S++++ L K
Sbjct: 184 LGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCK 218


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 117/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCKN  I+ AL ++ +ML KG+KP  V+++ +  GLF+  +   A K+F EM   G
Sbjct: 584 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 643

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY + + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 644 TTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAK 703

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV ++ TYS+MI  L  +   ++A +LF+ +E++  A +      ++   
Sbjct: 704 ELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRML 763

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E +K    L  + E N+  +AS +S++  L ++
Sbjct: 764 LNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSR 800



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           N+++ ML+KGI P+  + N L         +++A  +F++MQ  G+  DT T+   I  L
Sbjct: 388 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 447

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVAD 135
           C+ G + +++  F  +  +        Y CLI G C  G L  A EL    + + +    
Sbjct: 448 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 507

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V  +S +I+ L  +G++ +  D+   M +    PNV+TF +L+ G+  +    +   LL 
Sbjct: 508 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 567

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
            M    + P+  I   +VD   KN
Sbjct: 568 AMASIGIEPNCYIYGTLVDGYCKN 591



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ K+ E++ A  L+ EM+ +G+ P ++I N++   L ++ ++++A  +  +M   G
Sbjct: 196 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY++ IDGLCK+  + ++  +   +       +   Y+ LI G   SG    ++
Sbjct: 256 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    ++  V   +  IH L+  G+ ++A  +F  M      P++I++ T++HG+
Sbjct: 316 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 375

Query: 182 IRINEP--SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +   + V  + + M  K + P+  + +I+++  A+
Sbjct: 376 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYAR 414



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   M+  G +P+VV  N+L  G   +  +E AF L D M   G
Sbjct: 514 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 573

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   +DG CKNG I +++ +FR +     +     YS ++ GL ++ R   A 
Sbjct: 574 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 633

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +        + TY +++ GL  +   D+A+ L   +    V  ++ITF  +I   
Sbjct: 634 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 693

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +  EL   +    ++P+    S+++  L K E
Sbjct: 694 FKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEE 732



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIH-NTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G C + E+  A  L SEM++K I P  V + +++   L +  +V     + D M + 
Sbjct: 478 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 537

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   ++G C  G + E+  L   +  +  E +   Y  L+DG CK+GR++ A
Sbjct: 538 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 597

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  +    +    V YSI++HGL+   +   A  +F +M E+    ++ T+G ++ G
Sbjct: 598 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 657

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             R N   +   LL K+   NV  D    +IV+  +            F V  RQE
Sbjct: 658 LCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM------------FKVGRRQE 701



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y +   ++ A+ ++ +M +KG+ PD V   T+   L  I +++ A   F+ M   
Sbjct: 407 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 466

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-IQAYSCLIDGLCKSGRLEI 119
           GV      Y   I G C +G +V++ EL   +         ++ +S +I+ LCK GR+  
Sbjct: 467 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 526

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             ++   + +     +VVT++ ++ G    G M++A  L   M    + PN   +GTL+ 
Sbjct: 527 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 586

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           G+ +       + +   M  K V P + + SI++
Sbjct: 587 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 620



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           +I+  C+   ++ AL+ ++ M+  G+ P   ++  L  G     ++ +A +L  EM  +D
Sbjct: 443 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD 502

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                 + ++  I+ LCK G + E  ++   +       ++  ++ L++G C  G +E A
Sbjct: 503 IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 562

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++    +  +   Y  ++ G   +G++D A  +F DM    V P  + +  ++HG
Sbjct: 563 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHG 622

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
             +    +   ++ H+M E           +V+  L +N  +
Sbjct: 623 LFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCT 664



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 102/215 (47%), Gaps = 2/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+K ++ A  +  +M+  G +P+ + +N+L  G         + ++F +M   
Sbjct: 265 LIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 324

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV         FI  L K+G   E+  +F ++ +   + DI +YS ++ G   +    +A
Sbjct: 325 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 384

Query: 121 --LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
               +F+ +    +  +   ++I+I+     G MDKA  +F DM+   + P+ +TF T+I
Sbjct: 385 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 444

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               RI      +   + M +  V P  ++   ++
Sbjct: 445 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLI 479



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC    +E A  L   M S GI+P+  I+ TL  G  +  +++ A  +F +M   G
Sbjct: 549 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 608

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   +  Y+I + GL +      + ++F  +      + I  Y  ++ GLC++   + A 
Sbjct: 609 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 668

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  D++T++I+I  ++  G+  +A +LF  +    + PN+ T+  +I   
Sbjct: 669 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNL 728

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEISLNS 225
           I+     +   L   +++     D+ +++ IV  LL K E++  S
Sbjct: 729 IKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKAS 773



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 85  SVELFRTLRILKCEL----DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
           ++ELF+ +    C       I  Y+ LID   +  R ++ L +   L +  L  D  +YS
Sbjct: 136 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS 195

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I+G   DG++DKAH LFL+M E  V P ++   ++I    ++ E  K   ++ KM + 
Sbjct: 196 -LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 254

Query: 201 NVMPDASIVSIVVDLLAKNE 220
            + PD    S+++D L K++
Sbjct: 255 GIAPDLFTYSLIIDGLCKSK 274



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +  +N L      +H+ +    +   + ++G+  D  +Y++ I G  K+G + ++  L
Sbjct: 154 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSL-IYGFVKDGEVDKAHCL 212

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  +        I   + +I  LCK   ++ A  +   +    +  D+ TYS++I GL  
Sbjct: 213 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 272

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              MDKA  +   M E    PN IT+ +LIHG+      ++ + +  +M    V+P
Sbjct: 273 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 328


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 103/203 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +C +     A  L   M+ K I PD+V  + L     +  +V  A +++ EM R  
Sbjct: 96  MIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWS 155

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T TY   IDG CK   + ++  +  ++    C  D+  +S LI+G CK+ R++  +
Sbjct: 156 IFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGM 215

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R  +VA+ VTY+ +IHG    G +D A DL  +M    VAP+ ITF  ++ G 
Sbjct: 216 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGL 275

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
               E  K   +L  +++  V P
Sbjct: 276 CSKKELRKAFAILEDLQKSEVCP 298



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK+     A NL++EM  KGI P+V+ +N +        +   A +L   M    
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T++  I+   K   + E+ E+++ +           Y+ +IDG CK  R++ A 
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAK 180

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  S+       DVVT+S +I+G     ++D   ++F +M    +  N +T+ TLIHGF
Sbjct: 181 RMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGF 240

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
            ++ +     +LL++M    V PD  +   ++  L +K E+
Sbjct: 241 CQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKEL 281



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 11/224 (4%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG----------VAADTRTYTI 71
           M+  G +P+VV  NTL   L    +V  A  L D M  +G          + AD    T 
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            +D LCK+G  + +  LF  +       ++  Y+C+ID  C SGR   A +L   +    
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  D+VT+S +I+    + ++ +A +++ +M   ++ P  IT+ ++I GF + +      
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAK 180

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
            +L  M  K   PD    S +++   K +   N +  F  +H R
Sbjct: 181 RMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR 224



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 92/181 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN + K +++  A  +Y EML   I P  + +N++  G  +  +V+ A ++ D M   G
Sbjct: 131 LINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKG 190

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  T++  I+G CK   +   +E+F  +       +   Y+ LI G C+ G L+ A 
Sbjct: 191 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 250

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +    +  D +T+  M+ GL +  ++ KA  +  D++++ V P +I F   +  F
Sbjct: 251 DLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCPRLIFFLFSLCSF 310

Query: 182 I 182
           I
Sbjct: 311 I 311



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 10/222 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG----------IKPDVVIHNTLFIGLFEIHQVERAF 51
           L+N  C+   +  AL L   M+ +G          IK DVVI   +   L +      A 
Sbjct: 16  LMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKDGNHINAQ 75

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
            LF EM   G+  +  TY   ID  C +G   ++ +L R +   +   DI  +S LI+  
Sbjct: 76  NLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAF 135

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            K  ++  A E++  + R  +    +TY+ MI G     ++D A  +   M     +P+V
Sbjct: 136 VKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDV 195

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +TF TLI+G+ +       +E+  +M  + ++ +    + ++
Sbjct: 196 VTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLI 237


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +N +I+     Y +MLSKG++PD+V++NTL  G  +   +  A  + D M R G
Sbjct: 351 LIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG C+ G +  ++E+ + +     ELD   +S LI G+CK GR+  A 
Sbjct: 411 LRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAE 470

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + R  +  D VTY++M+      G       L  +M+ +   PNV+T+  L++G 
Sbjct: 471 RALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGL 530

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ +      LL  M    V+PD
Sbjct: 531 CKLGQMKNADMLLDAMLNVGVVPD 554



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 2/189 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+CKN ++  A N+   M+ +G++PD V + TL  G      V+ A ++  EM ++G
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNG 445

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  I G+CK G ++++    R +     + D   Y+ ++D  CK G  +   
Sbjct: 446 IELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGF 505

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHG 180
           +L   +     + +VVTY+++++GL   GQM  A D+ LD   N  V P+ IT+ TL+ G
Sbjct: 506 KLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNA-DMLLDAMLNVGVVPDDITYNTLLEG 564

Query: 181 FIRINEPSK 189
             R    SK
Sbjct: 565 HHRHANASK 573



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK  +++GA  L+ EM  +G+ P+ VI  TL  G     Q++   + + +M   G
Sbjct: 316 LINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKG 375

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   ++G CKNG +V +  +   +       D   Y+ LIDG C+ G ++ AL
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTAL 435

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  +  D V +S +I G+  +G++  A     +M    + P+ +T+  ++  F
Sbjct: 436 EIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAF 495

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +     +LL +M+    +P+    +++++ L K
Sbjct: 496 CKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCK 532



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++    L   M     +PDV  ++ L   L + ++++ A +LF EM   G
Sbjct: 281 LINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERG 340

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  I G  +NG I    E ++ +     + DI  Y+ L++G CK+G L  A 
Sbjct: 341 LIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAAR 400

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + R  L  D VTY+ +I G    G +D A ++  +M++N +  + + F  LI G 
Sbjct: 401 NIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGM 460

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +          L +M    + PD    ++++D   K
Sbjct: 461 CKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCK 497



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 89/179 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           + +++     +  + E+   G   +   + I ++  CK G I ++ ++F  +        
Sbjct: 215 MMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPT 274

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ LI+G CK G L++   L H + +     DV TYS +I+ L  + +MD AH LF 
Sbjct: 275 VVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFY 334

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +M E  + PN + F TLIHG  R  +   + E   KM  K + PD  + + +V+   KN
Sbjct: 335 EMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKN 393



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 102/206 (49%), Gaps = 8/206 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +CK   I  A  ++ E+  + ++P VV  NTL  G  ++  ++  F+L   M++ 
Sbjct: 245 ILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKS 304

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----YSCLIDGLCKSGR 116
               D  TY+  I+ LCK   +  +  LF  +    CE  +      ++ LI G  ++G+
Sbjct: 305 RTRPDVFTYSALINALCKENKMDGAHRLFYEM----CERGLIPNDVIFTTLIHGHSRNGQ 360

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +++  E +  +    L  D+V Y+ +++G   +G +  A ++   M    + P+ +T+ T
Sbjct: 361 IDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTT 420

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNV 202
           LI GF R  +    +E+  +M +  +
Sbjct: 421 LIDGFCRGGDVDTALEIRKEMDQNGI 446



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 94/197 (47%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            Y E+L  G   +V + N L     +   +  A K+FDE+ +  +     ++   I+G C
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYC 286

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G +     L   +   +   D+  YS LI+ LCK  +++ A  LF+ +    L+ + V
Sbjct: 287 KVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDV 346

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            ++ +IHG   +GQ+D   + +  M    + P+++ + TL++GF +  +      ++  M
Sbjct: 347 IFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406

Query: 198 KEKNVMPDASIVSIVVD 214
             + + PD    + ++D
Sbjct: 407 IRRGLRPDKVTYTTLID 423



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++ +CK  + +    L  EM S G  P+VV +N L  GL ++ Q++ A  L D M   
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNV 549

Query: 61  GVAADTRTYTIFIDG 75
           GV  D  TY   ++G
Sbjct: 550 GVVPDDITYNTLLEG 564


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C    I  A+     ++S+G +P V  H  +  GL +I +   A     +M    
Sbjct: 180 LINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELD 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +Y+I ID LCKN  + E+V+LF  +R +     +  Y+ LI G+C SG+ + A 
Sbjct: 240 CEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQAS 299

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  DVVT+SI++  L  +G + +A  +F  M + A+ P+++T+ +LIHG 
Sbjct: 300 ILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGV 359

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +   +   LL++M  +N+ PD    SI VD+  K
Sbjct: 360 CKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCK 396



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CKN+ +  A++L+  M S GI P VV +N+L  G+    Q ++A  LF EM   
Sbjct: 249 IIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEW 308

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T++I +D LCK G ++E++ +F  +  +  E DI  YS LI G+CKS   + +
Sbjct: 309 NMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKES 368

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    +  DVVT+SI +      G + +A  +   M E  + PNV+T+ +L+ G
Sbjct: 369 STLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDG 428

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +    +++E  KV ++   M  K   PD    +I++    K+E
Sbjct: 429 YCLHSQMDEARKVFDI---MVNKGCAPDVLSYNILIKGYCKSE 468



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 97/170 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC + +++ A  ++  M++KG  PDV+ +N L  G  +  +++ A +LFDEM   G
Sbjct: 425 LMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKG 484

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ T+T  I GLC+ G    + ELF+ +    C  D+  YS L+ G CK G L+ AL
Sbjct: 485 LTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEAL 544

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            LF +L +  L  + V   I++ G+   G+++ A +LF  +    + P+V
Sbjct: 545 ALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 3/240 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+   + +  L +EMLS+ I+PDVV  +       +   V  A  + + M   G
Sbjct: 355 LIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   +DG C +  + E+ ++F  +    C  D+ +Y+ LI G CKS R++ A 
Sbjct: 415 LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAK 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    L  + +T++ +I GL   G+   A +LF  M  +   P++IT+ TL+ GF
Sbjct: 475 QLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGF 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
            +     + + L   +K+  + P+  I  I++  + K    E +     S ++ E Q +V
Sbjct: 535 CKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK   +  AL+++ +M+   ++PD+V +++L  G+ +    + +  L +EM   
Sbjct: 319 ILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSR 378

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  T++I++D  CK G + E+  +   +       ++  Y+ L+DG C   +++ A
Sbjct: 379 NIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEA 438

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +       DV++Y+I+I G     ++D+A  LF +M    + PN IT  TLI G
Sbjct: 439 RKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISG 498

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +   P    EL  KM      PD    S ++    K+
Sbjct: 499 LCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKH 537



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 4/138 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYCK++ I+ A  L+ EM  KG+ P+ + H TL  GL +  +   A +LF +M   
Sbjct: 459 ILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSH 518

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
           G   D  TY+  + G CK+G++ E++ LF  L+  K +L      C  L+ G+CK+G+LE
Sbjct: 519 GCPPDLITYSTLLSGFCKHGHLDEALALFEALK--KSQLKPNHVICKILLGGMCKAGKLE 576

Query: 119 IALELFHSLPRGVLVADV 136
            A ELF SL    L  DV
Sbjct: 577 DAKELFSSLSIEELQPDV 594



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 109/228 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    + K  +  +++Y +M   G+   V     L   L  +H V   F +  ++ + G
Sbjct: 110 LLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLG 169

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   I+GLC  G IVE++E    +     +  +  ++ +++GLCK G+   A+
Sbjct: 170 FKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAI 229

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +       +VV+YSI+I  L  +  +++A DLF  M    ++P V+T+ +LI+G 
Sbjct: 230 VWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGM 289

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
               +  +   L  +M E N+ PD    SI+VD L K  + L +L  F
Sbjct: 290 CNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVF 337



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK  +   A+    +M+    +P+VV ++ +   L +   V  A  LF  M+  
Sbjct: 214 MIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSI 273

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++    TY   I G+C +G   ++  LF+ +     + D+  +S L+D LCK G +  A
Sbjct: 274 GISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEA 333

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +F  + +  +  D+VTYS +IHG+       ++  L  +M    + P+V+TF   +  
Sbjct: 334 LSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDV 393

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +    S+   +++ M E+ + P+    + ++D
Sbjct: 394 FCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMD 427



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 99/205 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C + + + A  L+ EML   +KPDVV  + L   L +   V  A  +F +M +  
Sbjct: 285 LIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIA 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  I G+CK+    ES  L   +       D+  +S  +D  CK G +  A 
Sbjct: 345 MEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQ 404

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    L  +VVTY+ ++ G     QMD+A  +F  M     AP+V+++  LI G+
Sbjct: 405 SIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGY 464

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +     +  +L  +M  K + P++
Sbjct: 465 CKSERIDEAKQLFDEMSHKGLTPNS 489


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 112/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CKN  ++ AL +Y +M +KG+K D+V++NTL  GL +      A K   EM + G
Sbjct: 343 LINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRG 402

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  +DG CK G +  ++E+ + +     +LD  A++ +I GLC+ G++  A 
Sbjct: 403 LIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAE 462

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + R  L  D  TY++++ G    G +     L  +M+ +   P VIT+  L++G 
Sbjct: 463 RTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGL 522

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +      LL+ M    V+PD    +I++
Sbjct: 523 CKQGQVKNADMLLNAMLNLGVVPDDITYNILL 554



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  ++E A +L+ EM  +G+ P+ V   TL  G  +  +V+ A +++ +M   G
Sbjct: 308 LIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKG 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD   Y   IDGLCK GY  E+ +    +       D   Y+ L+DG CK G LE+AL
Sbjct: 368 LKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELAL 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  +  D V ++ +I GL  DG++  A     +M    + P+  T+  ++ GF
Sbjct: 428 EMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGF 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +     +LL +M+    +P     +++++ L K 
Sbjct: 488 CKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQ 525



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK+  +E    L   M    + PDV  ++ L  GL +  Q+E A  LF EM   G
Sbjct: 273 LINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRG 332

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  I+G CKNG +  ++E+++ +     + D+  Y+ LIDGLCK G    A 
Sbjct: 333 LVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREAR 392

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    + +  L+ D  TY+ ++ G   +G ++ A ++  +M +  +  + + F  +I G 
Sbjct: 393 KFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGL 452

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +       L +M    + PD    ++V+D   K
Sbjct: 453 CRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCK 489



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 113/219 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N  CK  +++ A  ++ E+   G++P  V  NTL  G  +   +E  F+L   M+  
Sbjct: 237 VLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEF 296

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TY+  IDGLCK   + ++  LF+ +       +   ++ LI+G CK+GR+++A
Sbjct: 297 RVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLA 356

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE++  +    L AD+V Y+ +I GL   G   +A     +M +  + P+  T+ TL+ G
Sbjct: 357 LEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDG 416

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +    +E+  +M ++ +  D    + ++  L ++
Sbjct: 417 SCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRD 455



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 105/200 (52%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL  Y E+L  G  P+V   N L   L +  +V+ A  +FDE+++ G+     ++   I+
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK+G + E   L   +   +   D+  YS LIDGLCK  +LE A  LF  +    LV 
Sbjct: 276 GYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVP 335

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + VT++ +I+G   +G++D A +++  M    +  +++ + TLI G  +     +  + +
Sbjct: 336 NDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFV 395

Query: 195 HKMKEKNVMPDASIVSIVVD 214
            +M ++ ++PD    + ++D
Sbjct: 396 GEMTKRGLIPDKFTYTTLLD 415



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A + + E+   G   +  T+ + ++ LCK G + ++  +F  +R    +    +++ LI+
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G CKSG LE    L   +    +  DV TYS +I GL  + Q++ A+ LF +M +  + P
Sbjct: 276 GYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVP 335

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           N +TF TLI+G  +       +E+  +M  K +  D  + + ++D L K
Sbjct: 336 NDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCK 384



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 95/178 (53%), Gaps = 3/178 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  ++E AL +  EM+ +GI+ D V    +  GL    ++  A +   EM R G
Sbjct: 413 LLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAG 472

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT+ +DG CK G +    +L + ++       +  Y+ L++GLCK G+++ A 
Sbjct: 473 LKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNAD 532

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L +++    +V D +TY+I++ G    G++    ++  +M    +  +  ++ +L+H
Sbjct: 533 MLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM---GLVSDYASYRSLLH 587



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 11/149 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C++ +I  A     EML  G+KPD   +  +  G  +   V+  FKL  EMQ DG
Sbjct: 448 IISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDG 507

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
                 TY + ++GLCK G +  +  L   +  L    D   Y+ L+ G CK G+L    
Sbjct: 508 HIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQ 567

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +  E+        LV+D  +Y  ++H L
Sbjct: 568 NVKTEM-------GLVSDYASYRSLLHEL 589



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 70/139 (50%)

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           GY+ ++++ FR  +    ++      CL++ + K     +ALE +  +       +V T+
Sbjct: 176 GYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTF 235

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +++++ L  +G++  A  +F ++ +  + P  ++F TLI+G+ +     +   L   M+E
Sbjct: 236 NVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEE 295

Query: 200 KNVMPDASIVSIVVDLLAK 218
             V PD    S ++D L K
Sbjct: 296 FRVFPDVFTYSALIDGLCK 314



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G+CK  +++    L  EM S G  P V+ +N L  GL +  QV+ A  L + M   
Sbjct: 482 MVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNL 541

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           GV  D  TY I + G CK+G
Sbjct: 542 GVVPDDITYNILLQGHCKHG 561



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 63/120 (52%)

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++  ++ L++ LCK G+++ A  +F  + +  L    V+++ +I+G    G +++   L 
Sbjct: 231 NVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLK 290

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + MEE  V P+V T+  LI G  +  +      L  +M ++ ++P+    + +++   KN
Sbjct: 291 MVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKN 350


>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
          Length = 441

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   +  A    + ++  G  PD   + +   G     +V+ AFK+F EM ++G
Sbjct: 161 LVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNG 220

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +YT  I GL +   I E++ L   ++   C  +++ Y+ LID LC SG+   A+
Sbjct: 221 CHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAM 280

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D   Y+++I    +   +D+A  L   M EN + PNVIT+  LI GF
Sbjct: 281 NLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGF 340

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
            + N   K + LL KM E+N++PD    + ++     + ISL+
Sbjct: 341 CKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGISLS 382



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 92/180 (51%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N L   L     VE   +L+ EM  D V+ D  T+   ++G CK GY+VE+ +    L 
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLI 182

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
              C+ D   Y+  I G C+   ++ A ++F  + +     + V+Y+ +I+GL+   ++D
Sbjct: 183 QAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID 242

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +A  L + M+++   PNV T+  LI       + S+ + L  +M E  + PD  + ++++
Sbjct: 243 EALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLI 302



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%)

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           + Y   +  L + G + E   L+  +       DI  ++ L++G CK G +  A +    
Sbjct: 121 KCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTW 180

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L +     D  TY+  I G     ++D A  +F +M +N    N +++  LI+G     +
Sbjct: 181 LIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKK 240

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             + + LL KMK+ N  P+    ++++D L 
Sbjct: 241 IDEALSLLVKMKDDNCCPNVRTYTVLIDALC 271



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C + +   A+NL+ +M   GIKPD  ++  L         ++ A  L + M  +
Sbjct: 265 VLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLEN 324

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           G+  +  TY   I G CK   + +++ L   +       D+  Y+ LI G C SG
Sbjct: 325 GLMPNVITYNALIKGFCKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSG 378


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 117/216 (54%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C+ + ++GA+ L S+M S G KPD+V +NTL  GL    Q   A +L D M ++G
Sbjct: 348 IINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNG 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I  LC+ G +V+++E+F+ +    C  +   YS +I GL K+ +L+ AL
Sbjct: 408 CLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQAL 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ +       D + Y ++   L +D  +++A      ++++ ++P+ + +  ++ G 
Sbjct: 468 ELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGL 526

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            R  +    I+++  M     MPD     I+++ LA
Sbjct: 527 CRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLA 562



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C   +++ AL L   + S G KP  V +NT+  GL    +   A +L  EM R+
Sbjct: 242 VLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRE 301

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+ + I  LC+ G + ++++L   +    C  +I  Y+ +I+GLC+   ++ A
Sbjct: 302 NCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGA 361

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       D+VTY+ ++ GL +  Q   A +L  +M +N   P+ +TF TLI  
Sbjct: 362 MGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGF 421

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       IE+  +M +K   P++   S ++  LAK
Sbjct: 422 LCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 459



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C+  ++  AL++  +ML +G  PDVV +N L     +     +A +L D M+ +G
Sbjct: 173 LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 232

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + +DG+C  G + +++EL R L    C+     Y+ ++ GLC + R   A 
Sbjct: 233 CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 292

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     +  T++++I+ L   G + +A  L   M ++    N++T+  +I+G 
Sbjct: 293 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 352

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                    + LL KMK     PD
Sbjct: 353 CEQRNVDGAMGLLSKMKSYGCKPD 376



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 101/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  +    A  L +EML +   P+    N +   L     +++A +L ++M + G
Sbjct: 278 VLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG 337

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  TY   I+GLC+   +  ++ L   ++   C+ DI  Y+ L+ GLC + +   A 
Sbjct: 338 CTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAE 397

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  ++ +   + D VT++ +I  L   G M  A ++F  M +    PN IT+ T+I G 
Sbjct: 398 ELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGL 457

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  + +EL ++M  K   PD
Sbjct: 458 AKATKLDQALELFNEMGHKGFNPD 481



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 3/198 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +GYC+   +  A  +   M    ++P+   +N L   L E  QV  A  + D+M   G
Sbjct: 141 LTDGYCRAGRLGDARRVVGGM---PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRG 197

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  TY I ++  CK     +++EL   +R   C  +   Y+ L+DG+C  G ++ AL
Sbjct: 198 CAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDAL 257

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  +LP        V Y+ ++ GL +  +   A +L  +M      PN  TF  +I+  
Sbjct: 258 ELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSL 317

Query: 182 IRINEPSKVIELLHKMKE 199
            R     + I+LL KM +
Sbjct: 318 CRKGLLQQAIQLLEKMSK 335



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 86/193 (44%), Gaps = 3/193 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G    VV +  L  G     ++  A ++   M    V  +  TY   I  LC+ G + ++
Sbjct: 130 GPAATVVAYGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDA 186

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + +   +    C  D+  Y+ L++  CK      A+EL   +       + VTY++++ G
Sbjct: 187 LSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDG 246

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +  +G +D A +L  ++  +   P+ + + T++ G           EL+ +M  +N  P+
Sbjct: 247 MCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPN 306

Query: 206 ASIVSIVVDLLAK 218
            +  ++V+  L +
Sbjct: 307 EATFNVVIYSLCR 319



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 11/211 (5%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +++ AL L     S    PD  + N L   L    + + A ++       G AA    Y 
Sbjct: 86  DLDAALRLVE---SSPRPPDAALANRLVRDLCRRGRPDDAERVVGAC---GPAATVVAYG 139

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPR 129
              DG C+ G + ++    R +  +  + +   Y+ LI  LC+ G++  AL +    L R
Sbjct: 140 ALTDGYCRAGRLGDA---RRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCR 196

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
           G    DVVTY+I++          +A +L   M      PN +T+  L+ G     +   
Sbjct: 197 GC-APDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD 255

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +ELL  +      P     + V+  L   E
Sbjct: 256 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAE 286



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           IE A+    ++   GI P  V++N + +GL    + E A  +   M   G   D  TY I
Sbjct: 497 IEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVI 556

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
            I+GL   GY+ E+ EL   L    C  D+     L++ L KS
Sbjct: 557 LIEGLAYEGYLNEARELLIKL----CSRDV-----LVNSLIKS 590


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 5/211 (2%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           + GA+ ++ EM  K + P++V +N+L  GL   + V+    L +EM   G   D  TY  
Sbjct: 49  LTGAIRVFHEMPDKNL-PNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNT 107

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            IDGLCK G + E+  LF  ++   C  D+  YSCLI G CK  R+ +A  LF  + +  
Sbjct: 108 LIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQA 167

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
            + DVVT+  ++ G  N G +D A  L  +M  +  +P+V T+ +L+  F ++    +  
Sbjct: 168 ALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAH 227

Query: 192 ELLHKMKE----KNVMPDASIVSIVVDLLAK 218
            +L +M +    KN   D     +++D L +
Sbjct: 228 RVLKRMAKGGSNKNCKADMFAYRMMMDGLCR 258



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +  A  L+ EM +K   PDV+ ++ L  G  ++ ++  A  LFD+M +  
Sbjct: 108 LIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQA 167

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   ++G C  G + ++  L   +    C  D+  Y+ L+D  CK  R+  A 
Sbjct: 168 ALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAH 227

Query: 122 ELFHSLPRGV----LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            +   + +G       AD+  Y +M+ GL   G+M  A +L   ++++   P    +  L
Sbjct: 228 RVLKRMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVAL 287

Query: 178 IHGFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDLLAK 218
           I G  +  E  K +E+L +M   +   P+A     V+  LA+
Sbjct: 288 IRGLCQGKELRKAMEVLEEMTLSRKGRPNAKAYKAVIQELAR 329


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  EIE A +L   ++SKG+ PDV   NTL  GL      + A ++F+EM+  G
Sbjct: 339 LISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKG 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I ID LC    + E++ L + +    C  +   Y+ LIDGLCKS R+E A 
Sbjct: 399 CKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAE 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +    VTY+ +I GL  + ++++A  L   M    + P+  T+ +L+  F
Sbjct: 459 EIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYF 518

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R+ +  K  +++  M      PD
Sbjct: 519 CRVGDIEKAGDIVQTMASNGCEPD 542



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 103/202 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C +K  + A+ ++ EM +KG KPD   ++ L   L    +++ A  L  EM+  G
Sbjct: 374 LIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG 433

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   Y   IDGLCK+  I ++ E+F  + +L        Y+ LIDGLCK+ R+E A 
Sbjct: 434 CARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEAS 493

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ ++      G ++KA D+   M  N   P++ T+GTLI G 
Sbjct: 494 QLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGL 553

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            R        +LL  ++ K ++
Sbjct: 554 CRAGRVDVASKLLRSVQMKGIV 575



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 105/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+CK   +E AL    E+  +G  PD V  N+L  G   I  V  A  + D M   
Sbjct: 233 VLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK 292

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I G+CK G   +++E+ + + + +C  +   Y+ LI  LCK   +E A
Sbjct: 293 GFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   L    L+ DV T++ +I GL      D A ++F +M+     P+  T+  LI  
Sbjct: 353 TDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDS 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                   + + LL +M+      +A + + ++D L K+
Sbjct: 413 LCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKS 451



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 110/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+   +  AL++   M+ KG  PDV  +N+L  G+ ++ + E+A ++  +M    
Sbjct: 269 LVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRE 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +T TY   I  LCK   I  + +L R L       D+  ++ LI GLC S   +IA+
Sbjct: 329 CSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAM 388

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       D  TYSI+I  L  + ++ +A  L  +ME +  A N + + TLI G 
Sbjct: 389 EMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGL 448

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +        E+  +M+   V   +   + ++D L KN+
Sbjct: 449 CKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNK 487



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKNK +E A  L  +M+ +G+KPD   +N+L      +  +E+A  +   M  +G
Sbjct: 479 LIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNG 538

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I GLC+ G +  + +L R++++    L   AY+ +I  L    R +  +
Sbjct: 539 CEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGM 598

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG-QMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF  +       D +T+ I+  GL N G  + +A D  ++M E  + P   +FG L  G
Sbjct: 599 RLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEG 658

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
              ++    +IEL++ + EK  M +
Sbjct: 659 LCSLSMEDTLIELINMVMEKAQMSE 683



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 36/241 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  C  + ++ AL L  EM S G   + V++NTL  GL +  ++E A ++FD+M+  
Sbjct: 408 ILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELL 467

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF------------------------------- 89
           GV+  + TY   IDGLCKN  + E+ +L                                
Sbjct: 468 GVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKA 527

Query: 90  ----RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
               +T+    CE DI  Y  LI GLC++GR+++A +L  S+    +V     Y+ +I  
Sbjct: 528 GDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQA 587

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP-SKVIELLHKMKEKNVMP 204
           L+   +  +   LF +M E +  P+ +T   +  G      P  + I+   +M EK ++P
Sbjct: 588 LFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILP 647

Query: 205 D 205
           +
Sbjct: 648 E 648



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E E A+ +  +M+ +   P+ V +NTL   L + +++E A  L   +   G
Sbjct: 304 LISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKG 363

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   I GLC +     ++E+F  ++   C+ D   YS LID LC   RL+ AL
Sbjct: 364 LLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEAL 423

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       + V Y+ +I GL    +++ A ++F  ME   V+ + +T+ TLI G 
Sbjct: 424 MLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGL 483

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L+ +M  + + PD
Sbjct: 484 CKNKRVEEASQLMDQMIMEGLKPD 507



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +N   ++ +++    L+S+M+++GI  DV   N L   L + HQ+  A  + +EM   
Sbjct: 128 IALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANH 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+T  + G  + G +  ++++ + +    C L   +   L++G CK GR+E A
Sbjct: 188 GLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     +       D VT++ +++G    G ++ A D+   M E    P+V T+ +LI G
Sbjct: 248 LRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEI 221
             ++ E  K IE+L +M  +   P+    + ++  L K NEI
Sbjct: 308 MCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEI 349



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           + TL + L +    +    L  +++  G   +  T+   I     N + +E++     L+
Sbjct: 58  NETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSF-TNFHEIENL-----LK 111

Query: 94  ILKCEL----DIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLYN 148
           IL+ EL    D   Y+  ++ L +  +L++ +E+ HS +    +V DV T++++I  L  
Sbjct: 112 ILENELGFKPDTNFYNIALNALVEDNKLKL-VEMLHSKMVNEGIVLDVSTFNVLIKALCK 170

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
             Q+  A  +  +M  + + P+ ITF TL+ GFI   + +  +++  +M
Sbjct: 171 AHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQM 219


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+   I  A N++ +M    + P V ++N+L  G F     + A   F E+ R G
Sbjct: 284 LIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKG 343

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T +I + GLC  G +  +      ++     L+  AY+ LID  CKSG L+ AL
Sbjct: 344 LRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEAL 403

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  +VVTYS +I G   +G+M+ A  ++ +M    V PNV+T+  LIHG 
Sbjct: 404 VTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGH 463

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +      L  +M+EK +  +A  VS++VD L +
Sbjct: 464 AKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCR 500



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  ++   + AL  + E++ KG++PD    + +  GL +  Q++ A +  + MQ+ G
Sbjct: 319 LIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSG 378

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +   Y + ID  CK+G + E++     +  +  E ++  YS LIDG  K+G +EIA+
Sbjct: 379 IALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAM 438

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +    +  +VVTY+ +IHG   +G MD A  L  +MEE  +  N IT   L+ G 
Sbjct: 439 AIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGL 498

Query: 182 IRINEPSKVIELL-----HKMKEKN 201
            R N     +  +      K  EKN
Sbjct: 499 CRENRVQDAVRFIMEYSGQKKSEKN 523



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 105/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K   +     L+ EML +G+ P VV +NTL         V +A++++D+M    
Sbjct: 144 ILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR 203

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I  LC+   I ++  LF  ++      ++  Y+ L+    K   ++ AL
Sbjct: 204 IDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHAL 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             ++ L +  LV + V ++ +I GL    ++ +A ++FLDM    VAP V  + +LIHG 
Sbjct: 264 VFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGA 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     + +    ++  K + PD    SIVV
Sbjct: 324 FRSGYAQEALAFFQEIIRKGLRPDEFTCSIVV 355



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C+   I  A  L+ EM   G++P++  +N L    F+   ++ A   + ++ + G
Sbjct: 214 MICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCG 273

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  IDGLC+   I E+  +F  +   +    +  Y+ LI G  +SG  + AL
Sbjct: 274 LVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEAL 333

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + R  L  D  T SI++ GL + GQM  A      M+++ +A N   +  LI  +
Sbjct: 334 AFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEY 393

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + +    +M E  V P+    S ++D  +KN
Sbjct: 394 CKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKN 431



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 6/210 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ YCK+  ++ AL   + M   G++P+VV +++L  G  +  ++E A  ++ EM   
Sbjct: 388 VLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAK 447

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TYT  I G  KNG +  +  L + +       +    S L+DGLC+  R++ A
Sbjct: 448 GVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507

Query: 121 LELFHSLP------RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           +             +   +A+ VTY  +I+GLY DGQ ++A   F  M ++ + P+  T+
Sbjct: 508 VRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTY 567

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
             +I G   +      + L   M +  V P
Sbjct: 568 TLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 35/190 (18%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P +   N +  GL + H + R ++LFDEM   G+     TY   I+     G + ++ E+
Sbjct: 136 PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEV 195

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +            Q  +  ID                         +VVTY+ MI  L  
Sbjct: 196 WD-----------QMVARRID------------------------PNVVTYTTMICALCE 220

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +  +  A  LFL+M+E  + PN+ T+  L+    + +     +   + + +  ++P+  I
Sbjct: 221 EDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVI 280

Query: 209 VSIVVDLLAK 218
            + ++D L +
Sbjct: 281 FTTLIDGLCQ 290



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E++ +F  LR L     + A + ++DGL K+  L    ELF  +    +V  VVTY+ +I
Sbjct: 124 EALSVFGRLRELPA---LPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLI 180

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +   + G + KA +++  M    + PNV+T+ T+I      +       L  +MKE  + 
Sbjct: 181 NACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMR 240

Query: 204 PD 205
           P+
Sbjct: 241 PN 242


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 1/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   +  A    + ++  G  PD   + +   G     +V+ AFK+F EM ++G
Sbjct: 161 LVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNG 220

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +YT  I GL +   I E++ L   ++   C  +++ Y+ LID LC SG+   A+
Sbjct: 221 CHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAM 280

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  D   Y+++I    +   +D+A  L   M EN + PNVIT+  LI GF
Sbjct: 281 NLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGF 340

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            + N   K + LL KM E+N++PD
Sbjct: 341 CKKNV-HKAMGLLSKMLEQNLVPD 363



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 1/208 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G+C+ KE++ A  ++ EM   G   + V +  L  GLFE  +++ A  L  +M+ D 
Sbjct: 196 FITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDN 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + RTYT+ ID LC +G   E++ LF+ +     + D   Y+ LI   C    L+ A 
Sbjct: 256 CCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEAS 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L+ +V+TY+ +I G +    + KA  L   M E  + P++IT+ TLI G 
Sbjct: 316 GLLEHMLENGLMPNVITYNALIKG-FCKKNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQ 374

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV 209
                      LL  M+E  ++P+   V
Sbjct: 375 CSSGNLDSAYRLLSLMEESGLVPNQRTV 402



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 92/180 (51%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +N L   L     VE   +L+ EM  D V+ D  T+   ++G CK GY+VE+ +    L 
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLI 182

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
              C+ D   Y+  I G C+   ++ A ++F  + +     + V+Y+ +I+GL+   ++D
Sbjct: 183 QAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID 242

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +A  L + M+++   PNV T+  LI       + S+ + L  +M E  + PD  + ++++
Sbjct: 243 EALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLI 302



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%)

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           + Y   +  L + G + E   L+  +       DI  ++ L++G CK G +  A +    
Sbjct: 121 KCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTW 180

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L +     D  TY+  I G     ++D A  +F +M +N    N +++  LI+G     +
Sbjct: 181 LIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKK 240

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             + + LL KMK+ N  P+    ++++D L 
Sbjct: 241 IDEALSLLVKMKDDNCCPNVRTYTVLIDALC 271



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C + +   A+NL+ +M   GIKPD  ++  L         ++ A  L + M  +
Sbjct: 265 VLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLEN 324

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I G CK   + +++ L   +       D+  Y+ LI G C SG L+ A
Sbjct: 325 GLMPNVITYNALIKGFCKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSA 383

Query: 121 LELFHSLPRGVLVADVVT 138
             L   +    LV +  T
Sbjct: 384 YRLLSLMEESGLVPNQRT 401


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   KM ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 3/214 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK   ++ A    + M S G  PD + + T+  GL    + E A +L +EM R 
Sbjct: 317 IVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRK 376

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+  FI  LC+ G I +++ L   +    C + I  Y+ L++G C  GR++ A
Sbjct: 377 NCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSA 436

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF+SLP      + +TY+ ++ GL +  ++D A +L  +M +N    NV+TF  L+  
Sbjct: 437 LELFNSLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSF 493

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +     + IEL+ +M E    P+    + ++D
Sbjct: 494 FCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLD 527



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 109/218 (50%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+   ++ A  L + M    + PD   +  L  GL +  +V  A  L D+M R  
Sbjct: 111 LVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT+ ++ +CK+    +++++   +R   C  +I  Y+ +I+G+C+  R++ A 
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDAR 227

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + L       D V+Y+ ++ GL    + +    LF +M EN   PN +TF  L+  F
Sbjct: 228 QILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFF 287

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R     + IE+L +M E     + ++ +IV++ + K 
Sbjct: 288 CRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQ 325



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 112/217 (51%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    ++ AL L++ +     +P+ + + TL  GL    +++ A +L  EM ++ 
Sbjct: 423 LVNGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQND 479

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+ + +   C+ G++ E++EL + +    C  ++  ++ L+DG+ +    E AL
Sbjct: 480 CPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEAL 539

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H L    +  D +TYS ++  L  + ++++A  +F  +++  + P  + +  ++   
Sbjct: 540 ELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSAL 599

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E  + I+    M   + MP+ S   I+++ LA+
Sbjct: 600 CKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAR 636



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 35/232 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-------------- 46
           ++ING C+   ++ A  + + + S G +PD V + T+  GL    +              
Sbjct: 212 VIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVEN 271

Query: 47  ---------------------VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                VERA ++ D M   G  A+T    I I+ +CK G + ++
Sbjct: 272 NCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDA 331

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            E    +    C  D  +Y+ ++ GLC++GR E A EL + + R     + VT++  I  
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICI 391

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           L   G +D+A  L   M E   +  ++T+  L++GF         +EL + +
Sbjct: 392 LCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL 443



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 102/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CK+     A+ +  EM +KG  P++V +N +  G+    +V+ A ++ + +   
Sbjct: 177 VLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSY 236

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT +YT  + GLC      +   LF  +    C  +   +  L+   C+ G +E A
Sbjct: 237 GFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERA 296

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +      A+    +I+I+ +   G++D A +   +M     +P+ I++ T++ G
Sbjct: 297 IEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKG 356

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R        ELL++M  KN  P+    +  + +L +
Sbjct: 357 LCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQ 394



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A +L +     G A D    T  I  LC+ G   ++  + RT       +D+ AY+ L+ 
Sbjct: 54  AARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVA 113

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C+ GRL+ A  L  S+P   +  D  TY+ +I GL + G++  A  L  DM      P
Sbjct: 114 GYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQP 170

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +V+T+  L+    + +   + +++L +M+ K   P+    +++++ + + +
Sbjct: 171 SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCRED 221



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 4/204 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  L     S+G  PDV +   L   L    +   A ++    +  G   D   Y   + 
Sbjct: 54  AARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVA 113

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+ G +  +  L  ++ +     D   Y+ LI GLC  GR+  AL L   + R     
Sbjct: 114 GYCRYGRLDAARRLIASMPVPP---DAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQP 170

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            VVTY++++  +       +A  +  +M      PN++T+  +I+G  R +      ++L
Sbjct: 171 SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQIL 230

Query: 195 HKMKEKNVMPDA-SIVSIVVDLLA 217
           +++      PD  S  +++  L A
Sbjct: 231 NRLSSYGFQPDTVSYTTVLKGLCA 254



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   +E A+ L  +M+  G  P+++  NTL  G+ E    E A +L   +   
Sbjct: 489 VLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSK 548

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ DT TY+  +D L +   I E+V++F  ++ +        Y+ ++  LCK    + A
Sbjct: 549 GISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRA 608

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           ++ F  +     + +  TY I+I GL  +G + +A 
Sbjct: 609 IDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEAR 644


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 106/201 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  +     +  A+ L+ EM+ +G  PD +++ T+  GL +  +++ A+ +   M++ G
Sbjct: 324 LVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAG 383

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + Y I I G C+   + E+ EL   ++    + D+  Y+ L+ GLCK+G      
Sbjct: 384 FQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVD 443

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +  G     VVT+  +IHG    GQ+D+A  +F  M+E+ + PN + + TLI   
Sbjct: 444 ELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFL 503

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +  + S  IEL  +M+EK+V
Sbjct: 504 CKSRDTSLAIELFDEMREKHV 524



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDV----VIHNTLFIGLFEIHQVERAFKLFDEM 57
           ++ G C    +  AL  + E   + + P+     V ++TL       + V  A +LF EM
Sbjct: 287 IVGGLCWVGRVGAALEFFRE--KRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEM 344

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
             +G + D   Y   I GL + G + ++  +  +++    +LD +AY+ LI G C+  RL
Sbjct: 345 VDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRL 404

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A EL   +    L  DV TY+ ++ GL   G      +L   M +    P+V+TFGTL
Sbjct: 405 NEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTL 464

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           IHG+ ++ +  + + +   M E  + P+  I + ++D L K+ 
Sbjct: 465 IHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSR 507



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 101/215 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  +   ++ A ++ + M   G + D   +N L  G     ++  A++L  EM+  G
Sbjct: 359 MISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAG 418

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + GLCK G  +   EL   +    C   +  +  LI G CK G+++ AL
Sbjct: 419 LQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEAL 478

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F S+    +  + V Y+ +I  L        A +LF +M E  V  NV TF  L+ G 
Sbjct: 479 RIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGL 538

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
              N P K  EL+  M+E    PD   + I+++ L
Sbjct: 539 RDKNMPEKAFELMDLMREGRCTPDYVTIDILMEWL 573



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 95/195 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+ K +  A  L  EM   G++PDV  +NTL  GL +        +L  +M   
Sbjct: 393 ILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDG 452

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+   I G CK G I E++ +FR++     + +   Y+ LID LCKS    +A
Sbjct: 453 GCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLA 512

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +ELF  +    + A+V T++ ++ GL +    +KA +L   M E    P+ +T   L+  
Sbjct: 513 IELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEW 572

Query: 181 FIRINEPSKVIELLH 195
              I E  ++   + 
Sbjct: 573 LPVIGETDRLKHFMQ 587



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +++G CK   ++ A+    E +    G  P+ V +N L         V  A +L  +M++
Sbjct: 215 IVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEK 274

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRL 117
           + V  +  T    + GLC  G +  ++E FR  R +  E    A  YS L+     +  +
Sbjct: 275 ERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNV 334

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            +A+ELFH +       D + Y  MI GL   G++D A  +   M++     +   +  L
Sbjct: 335 GVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNIL 394

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I GF R    ++  ELL +MKE  + PD    + ++  L K
Sbjct: 395 IGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCK 435



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 7/238 (2%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           +   + A  L   + +    PD    NTL   L +   +    +LF  M+   V  +  T
Sbjct: 115 SSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVT 174

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHS 126
           Y I + GLCK G + +++ +   +   + ++  D+   + ++DGLCK+GRL+ A++    
Sbjct: 175 YGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEE 234

Query: 127 LPRGV--LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             R V     + VTY+ + H     G +  A +L   ME+  V PN +T  T++ G   +
Sbjct: 235 RMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWV 294

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESN 242
                 +E     +++ V P+A   ++    L    +  N++    +    E VDE N
Sbjct: 295 GRVGAALEFFR--EKRTVWPEARGNAVTYSTLVGAFLHTNNV-GVAMELFHEMVDEGN 349


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 120/218 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK  ++   L  Y EM   G+KP+VV ++TL     +   +++A K + +M+R G
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID  CK G + ++  L   +  +  E ++  Y+ LIDGLC + R++ A 
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 457

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    ++ ++ +Y+ +IHG      MD+A +L  +++   + P+++ +GT I G 
Sbjct: 458 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 517

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + +      ++++MKE  +  ++ I + ++D   K+
Sbjct: 518 CSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK  ++E A  L+ EM  +G+ PD V +N++  G  ++ +++     F+EM+  
Sbjct: 267 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 326

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   I+  CK G +   +E +R ++    + ++ +YS L+D  CK G ++ A
Sbjct: 327 CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQA 386

Query: 121 LELFHSLPRGVLVAD-----------------------------------VVTYSIMIHG 145
           ++ +  + R  LV +                                   VVTY+ +I G
Sbjct: 387 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 446

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L +  +M +A +LF  M+   V PN+ ++  LIHGF++     + +ELL+++K + + PD
Sbjct: 447 LCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + K  + +     + +M+  G +P V  +N +   + +   VE A  LF+EM+  G
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   IDG  K G + ++V  F  ++ + CE D+  Y+ LI+  CK G+L I L
Sbjct: 293 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E +  +    L  +VV+YS ++     +G M +A   ++DM    + PN  T+ +LI   
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +I   S    L ++M +  V  +    + ++D L   E
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAE 451



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 10/217 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K K ++ AL L +E+  +GIKPD++++ T   GL  + ++E A  + +EM+  G
Sbjct: 478 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A++  YT  +D   K+G   E + L   ++ L  E+ +  +  LIDGLCK+  +  A+
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597

Query: 122 ELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + F+ +     L A+   ++ MI GL  D Q++ A  LF  M +  + P+   + +L+ G
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +     + + L  KM E         + + +DLLA
Sbjct: 658 NFKQGNVLEALALRDKMAE---------IGMKLDLLA 685



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 118/228 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +CK   ++ A+  Y +M   G+ P+   + +L     +I  +  AF+L +EM + G
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  IDGLC    + E+ ELF  +       ++ +Y+ LI G  K+  ++ AL
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + L    +  D++ Y   I GL +  +++ A  +  +M+E  +  N + + TL+  +
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   P++ + LL +MKE ++        +++D L KN++   ++  F
Sbjct: 553 FKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 600



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 88/190 (46%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P   + + LF  L ++  +E A + F +M+R  V   TR+    +    K G   +    
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F+ +        +  Y+ +ID +CK G +E A  LF  +    LV D VTY+ MI G   
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++D     F +M++    P+VIT+  LI+ F +  +    +E   +MK   + P+   
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369

Query: 209 VSIVVDLLAK 218
            S +VD   K
Sbjct: 370 YSTLVDAFCK 379



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 94/203 (46%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A+  +S+M    + P     N L     ++ + +   + F +M   G      TY I
Sbjct: 208 LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            ID +CK G +  +  LF  ++      D   Y+ +IDG  K GRL+  +  F  +    
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+     G++    + + +M+ N + PNV+++ TL+  F +     + I
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387

Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
           +    M+   ++P+    + ++D
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLID 410



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK   +  A  L +EML  G++ +VV +  L  GL +  +++ A +LF +M   G
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   I G  K   +  ++EL   L+    + D+  Y   I GLC   ++E A 
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 527

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    + A+ + Y+ ++   +  G   +   L  +M+E  +   V+TF  LI G 
Sbjct: 528 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587

Query: 182 IRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKN 219
            +    SK ++  +++     +  +A+I + ++D L K+
Sbjct: 588 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI+G CKNK +  A++ ++ + +  G++ +  I   +  GL + +QVE A  LF++M +
Sbjct: 582 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 641

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT  +DG  K G ++E++ L   +  +  +LD+ AY+ L+ GL    +L+ 
Sbjct: 642 KGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQK 701

Query: 120 ALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           A      +   G+   +V+  S++    Y  G +D+A +L
Sbjct: 702 ARSFLEEMIGEGIHPDEVLCISVL-KKHYELGCIDEAVEL 740



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L++ Y K+      L+L  EM    I+  VV    L  GL +   V +A   F+ +  D 
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+   +T  IDGLCK+  +  +  LF  +       D  AY+ L+DG  K G +  A
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L L   +    +  D++ Y+ ++ GL +  Q+ KA     +M    + P+
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 18/186 (9%)

Query: 50  AFKLFD-EMQRDGVAADTRTYTIFIDGL-CKNGYIVESVELFRTLRILKCELDI------ 101
           AFK F   M R+G      +Y I    L C   Y  ++  + + + + K + D+      
Sbjct: 125 AFKFFKWSMTRNGFKHSVESYCIVAHILFCARMY-YDANSVLKEMVLSKADCDVFDVLWS 183

Query: 102 ---------QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                      +  L   L   G LE A++ F  + R  +     + + ++H     G+ 
Sbjct: 184 TRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKT 243

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           D     F DM      P V T+  +I    +  +      L  +MK + ++PD    + +
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303

Query: 213 VDLLAK 218
           +D   K
Sbjct: 304 IDGFGK 309


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 117/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK   ++ A+ +   ML +G  PDV  +N++  GL ++ +V+ A +  D+M    
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +T TY   I  LCK   + E+ EL R L       D+  ++ LI GLC +    +A+
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       D  TY+++I  L + G++D+A ++   ME +  A +VIT+ TLI GF
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N+  +  E+  +M+   V  ++   + ++D L K+
Sbjct: 481 CKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKS 518



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  ++E A  L   + SKGI PDV   N+L  GL        A +LF+EM+  G
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ID LC  G + E++ + + + +  C   +  Y+ LIDG CK+ ++  A 
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAE 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + VTY+ +I GL    +++ A  L   M      P+  T+ +L+  F
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHF 550

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  +  K  +++  M      PD      ++  L K
Sbjct: 551 CRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 97/201 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C  +    A+ L+ EM SKG +PD   +N L   L    +++ A  +  +M+  G
Sbjct: 406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A    TY   IDG CK   I E+ E+F  + +     +   Y+ LIDGLCKS R+E A 
Sbjct: 466 CARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAS 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       D  TY+ ++      G + KA D+   M  N   P+++T+GTLI G 
Sbjct: 526 QLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +        +LL  ++ K +
Sbjct: 586 CKAGRVEVASKLLRSIQMKGI 606



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK  E++ A+    +M+++   P+ V +NTL   L + +QVE A +L   +   G
Sbjct: 336 VISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   I GLC       ++ELF  +R   CE D   Y+ LID LC  G+L+ AL
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +        V+TY+ +I G     ++ +A ++F +ME + V+ N +T+ TLI G 
Sbjct: 456 NMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGL 515

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +        +L+ +M  +   PD
Sbjct: 516 CKSRRVEDASQLMDQMIMEGQKPD 539



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 37/253 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C   +++ ALN+  +M   G    V+ +NTL  G  + +++  A ++FDEM+  
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVH 499

Query: 61  GVAADTRTYTIFIDGLCKN-----------------------------------GYIVES 85
           GV+ ++ TY   IDGLCK+                                   G I ++
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKA 559

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            ++ + +    CE DI  Y  LI GLCK+GR+E+A +L  S+    +      Y+ +I G
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQG 619

Query: 146 LYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEP-SKVIELLHKMKEKNVM 203
           L+   +  +A +LF +M E+N  AP+ +++  +  G      P  + ++ L ++ EK  +
Sbjct: 620 LFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFV 679

Query: 204 PDASIVSIVVDLL 216
           P+ S + ++ + L
Sbjct: 680 PEFSSLYMLAEGL 692



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 38/252 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +I  A  ++ EM   G+  + V +NTL  GL +  +VE A +L D+M  +G
Sbjct: 476 LIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEG 535

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   +   C+ G I ++ ++ + +    CE DI  Y  LI GLCK+GR+E+A 
Sbjct: 536 QKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 122 ELFHSLP-RGVLVA-----------------------------------DVVTYSIMIHG 145
           +L  S+  +G+ +                                    D V+Y I+  G
Sbjct: 596 KLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRG 655

Query: 146 LYN-DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           L N  G + +A D  +++ E    P   +   L  G + ++    +++L++ + +K    
Sbjct: 656 LCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFS 715

Query: 205 DASIVSIVVDLL 216
           +   VS+V  LL
Sbjct: 716 EEE-VSMVKGLL 726



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 96/201 (47%), Gaps = 1/201 (0%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
           +++M   GIKPDV   N L   L   HQ+  A  + ++M   G+  D +T+T  + G  +
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIE 236

Query: 79  NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADVV 137
            G +  ++ +   +    C     + + ++ G CK GR+E AL     +  +     D  
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T++ +++GL   G +  A ++   M +    P+V T+ ++I G  ++ E  + +E L +M
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQM 356

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
             ++  P+    + ++  L K
Sbjct: 357 ITRDCSPNTVTYNTLISTLCK 377



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C+  ++  A+ +  +M S G+ PD     T+  G  E   ++ A ++ ++M   
Sbjct: 194 VLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEF 253

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEI 119
           G +    +  + + G CK G + +++   + +        D   ++ L++GLCK+G ++ 
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+E+   + +     DV TY+ +I GL   G++ +A +    M     +PN +T+ TLI 
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLIS 373

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
              + N+  +  EL   +  K ++PD
Sbjct: 374 TLCKENQVEEATELARVLTSKGILPD 399


>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 376

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL++ ++M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   R+E AL
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNHWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I +  L + N IS
Sbjct: 315 YKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRIS 356



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 112/215 (52%), Gaps = 1/215 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C++ +I+GA  +Y +++   + PD V++N +  G F + +++  F+L++ M  +G  +  
Sbjct: 1   CESGDIDGAKRVYKKIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRS-V 59

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            ++ I + GL  NG + E + ++  ++      D   Y  L+ G CK+G ++ +L +   
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
             +   V D   YS MI+GL  +  +D+A  +  DM ++   PNV  + TLI+G +  ++
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               I +  +M   +  P     + +++ L KNE+
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 1/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGY +  +I+    L+  M S+G +  V   N +  GLF+  +V+    +++ M+  G
Sbjct: 31  MLNGYFRVAKIKDCFELWEMMGSEGNRS-VSSFNIMMRGLFDNGKVDEVISIWELMKESG 89

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNGYI +S+ +          LD  AYS +I+GLCK   L+ AL
Sbjct: 90  FVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRAL 149

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + +     +V  Y+ +I+GL    + + A  +F +M     +P +IT+ TLI+G 
Sbjct: 150 SVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGL 209

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     +   L+ ++ +K + P     S+++
Sbjct: 210 CKNEMFGEAYNLVKELLDKGLDPGVITYSMLM 241



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  ++ +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               +   + ++L +++  K   PD  + +I++
Sbjct: 244 LCLDHRVERALQLWNQVTSKGFKPDVQMHNILI 276



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C +  +E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M   
Sbjct: 239 MLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNHW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  + GLC   R+ 
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLKGLCSCNRIS 356

Query: 119 IALELFH 125
            A+   H
Sbjct: 357 DAILFLH 363


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 116/214 (54%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ +  +++ A+NL  E+   G++PD   ++ L  G  ++ +V+RA K    M++ G
Sbjct: 376 LIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRG 435

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A+   Y   +  +C+ G +  ++ LF  +    C LD  AYS +I G CKSG ++   
Sbjct: 436 IKAELFHYIPLLAAMCQQGMMERAMGLFNEMDK-NCGLDAIAYSTMIHGACKSGDMKTVK 494

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D VTYS++I+     G +++A  +   M  +   P+V  F +LI G+
Sbjct: 495 QLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGY 554

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
               +  KV++L+H+M+ KNV  D  I+S ++ L
Sbjct: 555 SAEGQTDKVLKLIHEMRAKNVAFDPKIISTIIRL 588



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 38/255 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           +LIN  CK   +  AL L  EM  KG+ PDVV +NTL  GL  + +++ A    +EM Q 
Sbjct: 268 VLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQG 327

Query: 60  DGVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           D V   D  T+   I GLCK G + ++V++   +    C  ++  Y+ LI G  +  +++
Sbjct: 328 DTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVK 387

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHG--------------------------------- 145
           +A+ L   L    L  D  TYSI+I+G                                 
Sbjct: 388 MAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLL 447

Query: 146 --LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
             +   G M++A  LF +M++N    + I + T+IHG  +  +   V +L+  M ++ + 
Sbjct: 448 AAMCQQGMMERAMGLFNEMDKNC-GLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLA 506

Query: 204 PDASIVSIVVDLLAK 218
           PDA   S+++++ AK
Sbjct: 507 PDAVTYSMLINMYAK 521



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 114/209 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C ++    A+ L   M + G++ DVV + TL  GL +  +++ A +L DEM   G
Sbjct: 129 VMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSG 188

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   Y+  + G C++G   +  ++F  +     + D+  ++ LID LCK G+   A 
Sbjct: 189 VQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAA 248

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  L  +VVTY+++I+ L  +G + +A  L  +M++  VAP+V+T+ TLI G 
Sbjct: 249 KVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGL 308

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
             + E  + +  L +M + + + +  +V+
Sbjct: 309 SGVLEMDEAMSFLEEMIQGDTVVEPDVVT 337



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 88/178 (49%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           +P+ V + T+  GL    +   A  L   MQ  GV AD  TY   I GLC    +  ++E
Sbjct: 120 RPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALE 179

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           L   +     + ++  YSCL+ G C+SGR +   ++F  + R  +  DV+ ++ +I  L 
Sbjct: 180 LLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            +G+  KA  +   M +  + PNV+T+  LI+   +     + + L  +M +K V PD
Sbjct: 240 KEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPD 297



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDV---VIHNTLFIGLFEI--HQVERAFKLFDE 56
           L+N   +   +  A +L S +      PDV   V +NT+   L       + +A  L  +
Sbjct: 57  LLNRRLRGAPVTEACSLLSAL------PDVRDAVSYNTVLAALCRRGGDHLRQARSLLVD 110

Query: 57  MQRDGVAA---DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           M R+   A   +  +YT  + GLC +    E+V L R+++      D+  Y  LI GLC 
Sbjct: 111 MSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCD 170

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           +  L+ ALEL   +    +  +VV YS ++ G    G+      +F DM    + P+VI 
Sbjct: 171 ASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIM 230

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F  LI    +  +  K  ++   M ++ + P+    +++++ L K
Sbjct: 231 FTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCK 275



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN Y K  ++E A  +  +M + G  PDV + ++L  G     Q ++  KL  EM+  
Sbjct: 514 MLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAK 573

Query: 61  GVAADTRTYTIFI 73
            VA D +  +  I
Sbjct: 574 NVAFDPKIISTII 586


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  EI  A +++  +   G++P VV  NTL  G  ++  ++  F+L   M   
Sbjct: 141 ILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + E+ +LF  +       +   ++ LIDG CK+G+L++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +       D +TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L K   S+++
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDA 365



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 93/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN +++ A+ +Y +MLS+G  PD + +NTL  GL +   + +A  L DEM   G
Sbjct: 247 LIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  +Y+ LI GLCK GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+I++H    +G +     L  +M+ +   P VIT
Sbjct: 367 KMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L S M + G++PDV  ++ L  GL +  +++ A KLFDEM   G
Sbjct: 177 LMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D   Y+ LI GLCK G L  A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAK 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + +++  LI G 
Sbjct: 297 DLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +IV+    KN
Sbjct: 357 CKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKN 394



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML +G+ P+ V   TL  G  +  +++ A +++ +M   
Sbjct: 211 VLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 GFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V+Y+ +I GL  +G+   A  +  +M    + P+  T+  ++H 
Sbjct: 331 FEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKNGDVKMGSKLLKEMQRDGHVP 414



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+      A    + I +D  CK G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L  ++    +  DV TYS++I+GL  + +MD+AH LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +M +  + PN +TF TLI G  +  +    +E+  +M  +   PD    + ++  L K 
Sbjct: 231 EMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKK 289



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E FR  R  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++     +G++  A  +F  + +  + P+V++F TL++G+I+
Sbjct: 124 YKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIK 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 218


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 125/253 (49%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYCK   ++ A+ LYSEM  +G KP+VV + TL  G       + A+ L DEM+++G
Sbjct: 442 LLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNG 501

Query: 62  VAADTRTYTIFIDGLC-----------------------------------KNGYIVESV 86
           V+ +  TY + I+G+C                                   K G +  + 
Sbjct: 502 VSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAF 561

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +++ +R      +I  Y+  IDG C++G  ++AL++ + + R  L  D+V Y+ +I+G 
Sbjct: 562 TVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGF 621

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G M  A  L + + ++ +APN + + +LI G+  +N   +V +    M +  ++ D 
Sbjct: 622 CQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADT 681

Query: 207 SIVSIVVDLLAKN 219
           S  + ++D  +K+
Sbjct: 682 STYTTLIDGFSKD 694



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 41/252 (16%)

Query: 1   ILINGYC---KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +LING C   +  E++G L  +   +S+G  P ++ +N++  G  +   +  AF ++ +M
Sbjct: 511 VLINGICMVDRVCEVDGMLKSF---MSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQM 567

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  G+  +  TYT FIDG C+ G    ++++   +R    + DI AY+ LI+G C+ G +
Sbjct: 568 REKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNM 627

Query: 118 EIALEL-----------------------------------FHSLPRGVLVADVVTYSIM 142
             AL+L                                   + S+ +G +VAD  TY+ +
Sbjct: 628 SHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTL 687

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I G   DG +  A +L+ +M      P+  TF  L HG  R  +     +LL +M+  +V
Sbjct: 688 IDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDV 747

Query: 203 MPDASIVSIVVD 214
            P+  I +++++
Sbjct: 748 RPNVFIYNMLIN 759



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GYC+    + AL + +++  +G++PD+V +N L  G  +   +  A +L   + +DG
Sbjct: 582 FIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDG 641

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +T  Y   I G      + E  + + ++       D   Y+ LIDG  K G +  AL
Sbjct: 642 LAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFAL 701

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +     + D  T++ + HGL   G +D A  L  +M    V PNV  +  LI+G+
Sbjct: 702 ELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGY 761

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +R  +  +   L  +M    + PD +   I+V
Sbjct: 762 LRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 39/271 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           L+ GYC  +E+  ALNL+ E L  GI P  V++  L  G  ++   ++A++L        
Sbjct: 303 LMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQG 362

Query: 54  ---------------------------FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                      F+EM   G+  D  TY   I   C+   + E++
Sbjct: 363 LLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREAL 421

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  ++    +  I  Y+ L+ G CK G ++ A++L+  +P      +VVTY  ++ G 
Sbjct: 422 NLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGY 481

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                 D A+ L  +M++N V+ N  T+  LI+G   ++   +V  +L     +  +P  
Sbjct: 482 IAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTM 541

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
              + +++   K  +  +   +FTV+++  E
Sbjct: 542 MTYNSIINGFVKAGMMGS---AFTVYQQMRE 569



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +    + AL L+ EM  +G + D  + + L     +    E A +LFDEM    +  D R
Sbjct: 169 RGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQR 228

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y + I  LCK G    ++ + R ++ +  +     Y  ++D L K+GR+E AL +   +
Sbjct: 229 VYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEM 288

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV+  + ++ G     ++  A +LF +  ++ + P  + +G LI G  ++   
Sbjct: 289 RDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMT 348

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVV 213
            K  EL  +M  + ++P    +S+V+
Sbjct: 349 QKAYELCRQMTGQGLLPSTFELSLVL 374



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 1/193 (0%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E A+ L+ EM    I PD  ++      L ++    RA ++  EM+  G      TY   
Sbjct: 209 EDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTM 268

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           +D L K G + E++ +   +R    ++D+   + L+ G C    +  AL LF    +  +
Sbjct: 269 VDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGI 328

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
           V   V Y ++I G    G   KA++L   M    + P+      ++ G +        + 
Sbjct: 329 VPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVC 388

Query: 193 LLHKMKEKNVMPD 205
           L  +M +   +PD
Sbjct: 389 LFEEMADSG-LPD 400



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I   CK  +   AL +  EM   G       + T+   L +  ++E A ++ DEM+  
Sbjct: 232 LAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDA 291

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFR-TLR--ILKCELDIQAYSCLIDGLCKSGRL 117
           G   D    T  + G C    +  ++ LF+ TL+  I+  ++    Y  LI G  + G  
Sbjct: 292 GKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKV---MYGVLIRGCDQVGMT 348

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A EL   +    L+      S+++ GL ND +   A  LF +M ++ + P+V T+  L
Sbjct: 349 QKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNL 407

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMP 204
           IH   + ++  + + L  +MK+  V P
Sbjct: 408 IHWHCQAHKLREALNLFDRMKKAGVKP 434


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 119/225 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  E+  A +++  +   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + E+ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  L       D++TY+ +I GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 91/172 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y ++LS+G  PD++ +NTL  GL +   +++A  L DEM    
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKE 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+     G +     L  +M  +   P V+T
Sbjct: 367 KMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY +  +++    L S M + G++PDV  ++ L  GL +  +++ A +LF+EM  +G
Sbjct: 177 LMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ L       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQAR 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L  M    + PD    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L++EML  G+ P+ V   TL  G  +  +V+ A +++ ++   
Sbjct: 211 VLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY   I GLCK G + ++ +L   + + + + D   Y+ LIDG CK G LE A
Sbjct: 271 GFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +   M    + P+  T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M     +P
Sbjct: 391 FCKKGDVKTGSKLLKEMXRDGHVP 414



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 80/165 (48%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  + E+   G  A    + I +   CK G +  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L+ G  + G L+    L  ++    +  DV TYS++I+GL  + +MD+A++LF 
Sbjct: 171 VVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFN 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  ++  +   PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPD 275



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G+I +++E FR  R  K  +       +++ L K    ++    
Sbjct: 64  SDIYVFSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    +G+M  A  +F  + +  + P+V++F TL+ G+IR
Sbjct: 124 YKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIR 183

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 218


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ +LF  +       +   ++ LIDG CK+G +++A
Sbjct: 207 GVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D+VTY+ +I+GL   G + +AHDL  +M    + P+ IT+ TLI G
Sbjct: 267 MEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E    M ++N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD+V +N L  GL +   +++A  L DEM   G
Sbjct: 253 LIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D  TY+++I+     G + K   L  +M+ +   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G+ PDV  ++ L  GL +  +++ A KLFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ T+T  IDG CKNG++  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G +D A +    M +  +  + + +  LI G 
Sbjct: 303 DLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKK 400



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +   V+ A +++ +M   
Sbjct: 217 VLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 337 FEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK G I  +  +F  +        
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFD 236

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M E  + PN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 237 EMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPD 281



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     +L  +M EK ++P++   + 
Sbjct: 193 LDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTT 252

Query: 212 VVDLLAKN 219
           ++D   KN
Sbjct: 253 LIDGHCKN 260


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 112/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CKN  ++ AL +  EM +KG+K D+  +  L  G  +   +E A  LF E+  +G
Sbjct: 624 LMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEG 683

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I G    G +V +++L++ +       D+  Y+ LIDGL K G L +A 
Sbjct: 684 LNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILAS 743

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +    LV D + Y+++++GL   GQ  K   +F +M++N V PNV+ +  +I G 
Sbjct: 744 DLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGH 803

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     +   L  +M +K ++PD +   I+V
Sbjct: 804 YREGNLDEAFRLHDEMLDKGILPDGATFDILV 835



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 106/192 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   +E A  L+SE+L +G+ P   ++N+L  G   +  +  A  L+ +M +DG
Sbjct: 659 LIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDG 718

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDGL K G ++ + +L+  ++ +    D   Y+ +++GL K G+    +
Sbjct: 719 LRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVV 778

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +  +  +V+ Y+ +I G Y +G +D+A  L  +M +  + P+  TF  L+ G 
Sbjct: 779 KMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGK 838

Query: 182 IRINEPSKVIEL 193
           +   +P +   L
Sbjct: 839 VGKFQPIRAASL 850



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK  +I+ A  L  +M S+GI P+VV +N + +       ++ A  +F  M   G
Sbjct: 448 ILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKG 507

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+I IDG  KN      +E+   +     E++   Y  +I+GLCK G+   A 
Sbjct: 508 LKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKAR 567

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL  ++          ++Y+ +I G   +G+MD A   + +M  N ++PNVIT+ +L+ G
Sbjct: 568 ELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDG 627

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             + N   + +E+  +MK K V  D
Sbjct: 628 LCKNNRMDQALEMRDEMKNKGVKLD 652



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 119/248 (47%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +ING CK  +   A  L + M+  K      + +N++  G  +  +++ A   ++EM  +
Sbjct: 553 IINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCAN 612

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE-- 118
           G++ +  TYT  +DGLCKN  + +++E+   ++    +LDI AY  LI G CK   +E  
Sbjct: 613 GISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESA 672

Query: 119 ---------------------------------IALELFHSLPRGVLVADVVTYSIMIHG 145
                                             AL+L+  + +  L  D+ TY+ +I G
Sbjct: 673 SALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDG 732

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  +G +  A DL+ +M+   + P+ I +  +++G  +  +  KV+++  +MK+ NV P+
Sbjct: 733 LLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPN 792

Query: 206 ASIVSIVV 213
             I + V+
Sbjct: 793 VLIYNAVI 800



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   +E A+    EM+S GI  +VV   +L  G  + + +  A  LF +M+ +G + ++ 
Sbjct: 315 KQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSV 374

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-HS 126
           T+++ I+   KNG + +++E ++ +  L     +     +I G  K  + E AL+LF  S
Sbjct: 375 TFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDES 434

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
              G+  A+V   + ++  L   G++DKA +L   ME   + PNV+++  ++    R   
Sbjct: 435 FETGL--ANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKN 492

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
                 +   M EK + P+    SI++D   KN    N L
Sbjct: 493 MDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVL 532



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 13/223 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CKN ++  AL+L+ +M ++G  P+ V  + L     +  ++E+A + + +M+  G
Sbjct: 344 LITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLG 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRT------LRILKCELDIQAYSCLIDGLCKSG 115
           +          I G  K     E+++LF          +  C       + ++  LCK G
Sbjct: 404 LTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFIC-------NTILSWLCKQG 456

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +++ A EL   +    +  +VV+Y+ ++        MD A  +F +M E  + PN  T+ 
Sbjct: 457 KIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYS 516

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            LI G  + ++   V+E++++M   N+  +  +   +++ L K
Sbjct: 517 ILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCK 559



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 103/219 (47%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N Y K+++ + A+++ ++ML  G+ P V   N     L + + +  A +L+  M   G
Sbjct: 168 LLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMVAIG 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T  + +    +     E++E+F        E D   YS  +   CK+  L +A 
Sbjct: 228 VDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMAN 287

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   +  + + V    TY+ +I      G M+ A     +M  + ++ NV+   +LI G
Sbjct: 288 SLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITG 347

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + N+    ++L +KM+ +   P++   S++++  +KN
Sbjct: 348 HCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKN 386



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 1/214 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +   I  A  LYS M++ G+  D      L        +   A ++F      G   D+ 
Sbjct: 209 QRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSL 268

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            Y++ +   CK   +  +  L R ++  K C    + Y+ +I    K G +E A+     
Sbjct: 269 LYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDE 328

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  +VV  + +I G   +  +  A DLF  ME    +PN +TF  LI  F +  E
Sbjct: 329 MVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGE 388

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             K +E   KM+   + P    V  ++    K +
Sbjct: 389 MEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQ 422



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 96/195 (49%), Gaps = 1/195 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+    + ++   AL ++S  + +G +PD ++++       +   +  A  L  EM+  
Sbjct: 237 LLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEK 296

Query: 61  GVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            +   ++ TYT  I    K G + +++     +      +++ A + LI G CK+  L  
Sbjct: 297 KLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGS 356

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+LF+ +       + VT+S++I     +G+M+KA + +  ME   + P+V    T+I 
Sbjct: 357 ALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQ 416

Query: 180 GFIRINEPSKVIELL 194
           G+++  +  + ++L 
Sbjct: 417 GWLKGQKHEEALKLF 431



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG  K  +    + ++ EM    + P+V+I+N +  G +    ++ AF+L DEM   
Sbjct: 763 VIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDK 822

Query: 61  GVAADTRTYTIFIDG 75
           G+  D  T+ I + G
Sbjct: 823 GILPDGATFDILVSG 837


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C++ +++GA  +YSE++  G+  D  ++N+L  G  +  +V+ A+K +D     
Sbjct: 304 ILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFA 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+  + RTY I I GL  +G + E++EL+  L + + C  D   +  LI GLC++G    
Sbjct: 364 GLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANK 422

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +F          DV +YS MI+GL N G++  A  ++  M+++   PN   +  LI 
Sbjct: 423 AFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALIS 482

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF ++   S  + +  KM +    P     + ++D L K E
Sbjct: 483 GFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAE 523



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+      A+ +YS+M   G  P V+ +NTL  GL +  + + A  +  EM  +G
Sbjct: 480 LISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENG 539

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I GL  +  I +++ +++ +     ++D+  ++ LI GLC +G+++ AL
Sbjct: 540 FTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEAL 599

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +F  +  +     ++VTY+ ++ GLY  G +DKA  L+  + E+ + P++I++ T I G
Sbjct: 600 HVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKG 659

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +   + I+LL ++  + ++P     +I+V  + K
Sbjct: 660 LCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIK 697



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 36/233 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L+ G  K   ++ AL+L  EM    ++PDVV +N L  G F+  + E+  +++D++ +D 
Sbjct: 199 LMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDP 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY + +DGLCK G   E  E++  +     + D+  Y  LI GLC+SG ++ A
Sbjct: 259 GARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGA 318

Query: 121 LELFHSLPRGVLVADVV----------------------------------TYSIMIHGL 146
             ++  + +  LV D                                    TY+IMI GL
Sbjct: 319 ARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGL 378

Query: 147 YNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           ++ G +D+A +L+  +E++ A  P+ +TFGTLIHG  +    +K   +  + +
Sbjct: 379 FDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEAR 431



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 99/203 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+N     A  ++ E    G + DV  ++++  GL  + ++  A K++++M +DG
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++  Y   I G C+     ++V ++  +    C   +  Y+ LIDGLCK+ + + A 
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       D+ TY  +I GL++D ++D A  ++  +    +  +V+    LIHG 
Sbjct: 530 SVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGL 589

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
               +  + + +   MKEK   P
Sbjct: 590 CSAGKVDEALHVFSDMKEKKNCP 612



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++++ + +    + AL+ +  + S  G  P +  HN L        +   A   F  +  
Sbjct: 88  VVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSH 147

Query: 60  DG----VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                 +A + +TY I +  LC  G +  +V LF +LR  +   D   YS L+ GL K  
Sbjct: 148 GAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQD 207

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-PNVITF 174
           RL+ AL+L   +PR  +  DVV Y+ ++ G +  G+ +K   ++  + ++  A PN+ T+
Sbjct: 208 RLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATY 267

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             ++ G  +     +V E+  +M   N+ PD     I++  L ++
Sbjct: 268 NVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRS 312



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           LI G   +K+I+ AL+++ ++L KG+K DV++HN L  GL    +V+ A  +F +M ++ 
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK 609

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   +DGL + GYI ++  L+ ++     E DI +Y+  I GLC   R+   
Sbjct: 610 NCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQM 152
           ++L    L RG+ +  V+T++I++  +   G +
Sbjct: 670 IQLLDEVLSRGI-IPTVITWNILVRAVIKYGPI 701



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI+G C   +++ AL+++S+M   K   P++V +NTL  GL+E   +++A  L+  +  
Sbjct: 584 ILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITE 643

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           DG+  D  +Y   I GLC    I E ++L 
Sbjct: 644 DGLEPDIISYNTRIKGLCSCDRIHEGIQLL 673


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 122/267 (45%), Gaps = 37/267 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC+  ++E A    ++M+ K  KPD+   N L  GL     ++ A KLF+     G
Sbjct: 270 IIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY----------------- 104
            A D  TY   I GLCK G   E+ +L   +   K   D   Y                 
Sbjct: 330 KAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKA 389

Query: 105 -----------------SC--LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                            +C  L+ GLC  G L+ AL+LF++        D VTY+ +I G
Sbjct: 390 FQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISG 449

Query: 146 LYNDGQMDKAHDLFLDMEE-NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           L  +G+ ++A DL  +MEE N + P+  T+ T+I G+ R  +  K  +  +KM EK+  P
Sbjct: 450 LCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKP 509

Query: 205 DASIVSIVVDLLAKNEISLNSLPSFTV 231
           D    +I++  L +  + + +L  F  
Sbjct: 510 DLFTCNILLRGLCREGMLVKALKLFNT 536



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRD 60
           +I+G CK    E A +L +EM  K + PD   +N +   L +   QVE+AF+  ++M   
Sbjct: 340 IISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEK 399

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T  I + GLC  G +  +++LF T       +D   Y+ +I GLCK GR E A
Sbjct: 400 SFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 459

Query: 121 LELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            +L   +  +  LV D  TY+ +I G   +GQ++KA      M E +  P++ T   L+ 
Sbjct: 460 FDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLR 519

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  R     K ++L +    K    DA   + ++  L K
Sbjct: 520 GLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCK 558



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-R 59
           IL+ G C    ++ AL L++  +SKG   D V +NT+  GL +  + E AF L  EM+ +
Sbjct: 410 ILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEK 469

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLE 118
           +G+  D  TY   I G C+ G + ++ + FR   + K  + D+   + L+ GLC+ G L 
Sbjct: 470 NGLVPDQTTYNTIILGYCREGQVEKAFQ-FRNKMVEKSFKPDLFTCNILLRGLCREGMLV 528

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            AL+LF++        D VTY+ +I GL  +G+ ++A DL  +M+E  + P+  T+  ++
Sbjct: 529 KALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAIL 588



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I+G CK    E A +L +EM  K G+ PD   +NT+ +G     QVE+AF+  ++M   
Sbjct: 446 IISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEK 505

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T  I + GLC+ G +V++++LF T       +D   Y+ +I GLCK GR E A
Sbjct: 506 SFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 565

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
            +L   +    L  D  TY+ ++  L + G+M+
Sbjct: 566 FDLLAEMKEKKLGPDCYTYNAILCALADAGRME 598



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 37/244 (15%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C++ + + +++  +E+L  G+ P  + +NT+  G     QVE+AF+  ++M       D 
Sbjct: 240 CRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDL 299

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T  I + GLC  G +  +++LF T       +D   Y+ +I GLCK GR E A +L   
Sbjct: 300 FTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAE 359

Query: 127 LPRGVLVADVVTY------------------------------------SIMIHGLYNDG 150
           +    L  D  TY                                    +I++ GL  +G
Sbjct: 360 MEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEG 419

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN-VMPDASIV 209
            +D A  LF        A + +T+ T+I G  +     +  +LL +M+EKN ++PD +  
Sbjct: 420 MLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTY 479

Query: 210 SIVV 213
           + ++
Sbjct: 480 NTII 483



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 5/198 (2%)

Query: 28  KPDVVIHNTLFIGLFEI---HQVERAFKLFDEMQRDGVAADTRTYTIFID--GLCKNGYI 82
           KP V +   +F  + +    +++  A  L  +M+      D  +Y   +D   LC++G  
Sbjct: 186 KPSVCLSKAIFTNVIKFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKT 245

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
            +S++    L           Y+ +I G C+ G++E A +  + +       D+ T +I+
Sbjct: 246 DQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNIL 305

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           + GL  +G +D A  LF        A + +T+ T+I G  +     +  +LL +M+EK +
Sbjct: 306 LRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKL 365

Query: 203 MPDASIVSIVVDLLAKNE 220
            PD    + ++  LA  E
Sbjct: 366 GPDCYTYNAILCALADAE 383



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+   +  AL L++  +SKG   D V +NT+  GL +  + E AF L  EM+  
Sbjct: 516 ILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEK 575

Query: 61  GVAADTRTYTIFIDGLCKNG 80
            +  D  TY   +  L   G
Sbjct: 576 KLGPDCYTYNAILCALADAG 595



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLY--NDGQMDKAHDLFLDMEENAVAPNVIT 173
           +L  A+ L   +       D  +Y+ ++  L+    G+ D++ D   ++ E+ + P+ IT
Sbjct: 207 KLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQIT 266

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231
           + T+IHG+ R  +  K  +  +KM EK+  PD    +I++  L    +  N+L  F  
Sbjct: 267 YNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNT 324


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C++ +++GA  +YSE++  G+  D  ++N+L  G  +  +V+ A+K +D     
Sbjct: 304 ILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFA 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+  + RTY I I GL  +G + E++EL+  L + + C  D   +  LI GLC++G    
Sbjct: 364 GLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANK 422

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +F          DV +YS MI+GL N G++  A  ++  M+++   PN   +  LI 
Sbjct: 423 AFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALIS 482

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF ++   S  + +  KM +    P     + ++D L K E
Sbjct: 483 GFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAE 523



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C+      A+ +YS+M   G  P V+ +NTL  GL +  + + A  +  EM  +G
Sbjct: 480 LISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENG 539

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I GL  +  I +++ +++ +     ++D+  ++ LI GLC +G+++ AL
Sbjct: 540 FTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEAL 599

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +F  +  +     ++VTY+ ++ GLY  G +DKA  L+  + E+ + P++I++ T I G
Sbjct: 600 HVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKG 659

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +   + I+LL ++  + ++P     +I+V  + K
Sbjct: 660 LCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIK 697



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 36/233 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L+ G  K   ++ AL+L  EM   G++PDVV +N L  G F+  + E+  +++D++ +D 
Sbjct: 199 LMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDP 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY + +DGLCK G   E  E++  +     + D+  Y  LI GLC+SG ++ A
Sbjct: 259 GARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGA 318

Query: 121 LELFHSLPRGVLVADVV----------------------------------TYSIMIHGL 146
             ++  + +  LV D                                    TY+IMI GL
Sbjct: 319 ARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGL 378

Query: 147 YNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           ++ G +D+A +L+  +E++ A  P+ +TFGTLIHG  +    +K   +  + +
Sbjct: 379 FDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEAR 431



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 99/203 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C+N     A  ++ E    G + DV  ++++  GL  + ++  A K++++M +DG
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++  Y   I G C+     ++V ++  +    C   +  Y+ LIDGLCK+ + + A 
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       D+ TY  +I GL++D ++D A  ++  +    +  +V+    LIHG 
Sbjct: 530 SVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGL 589

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
               +  + + +   MKEK   P
Sbjct: 590 CSAGKVDEALHVFSDMKEKKNCP 612



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++++ + +    + AL+ +  + S  G  P +  HN L        +   A   F  +  
Sbjct: 88  VVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSH 147

Query: 60  DG----VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
                 +A + +TY I +  LC  G +  +V LF +LR  +   D   YS L+ GL K  
Sbjct: 148 GAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQD 207

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-PNVITF 174
           RL+ AL+L   +PR  +  DVV Y+ ++ G +  G+ +K   ++  + ++  A PN+ T+
Sbjct: 208 RLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATY 267

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             ++ G  +     +V E+  +M   N+ PD     I++  L ++
Sbjct: 268 NVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRS 312



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           LI G   +K+I+ AL+++ ++L KG+K DV++HN L  GL    +V+ A  +F +M ++ 
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK 609

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   +DGL + GYI ++  L+ ++     E DI +Y+  I GLC   R+   
Sbjct: 610 NCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQM 152
           ++L    L RG+ +  V+T++I++  +   G +
Sbjct: 670 IQLLDEVLSRGI-IPTVITWNILVRAVIKYGPI 701



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI+G C   +++ AL+++S+M   K   P++V +NTL  GL+E   +++A  L+  +  
Sbjct: 584 ILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITE 643

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           DG+  D  +Y   I GLC    I E ++L 
Sbjct: 644 DGLEPDIISYNTRIKGLCSCDRIHEGIQLL 673


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 133/225 (59%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK +++  A +   EM + G+KP+VV ++TL   L + H +++A K   +M+R G
Sbjct: 328 LINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVG 387

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TYT  ID  CK GY+ ++++L   +  ++   ++  Y+ L+DGLCK GR+  A 
Sbjct: 388 LSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAE 447

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++ +  +  ++ TY+ ++HG   + +++ A +L  +++E  + P+++ +GT+I G 
Sbjct: 448 DLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGL 507

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
              N+  +   ++ +MK   +  ++ I +I +D   K   ++ +L
Sbjct: 508 CSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEAL 552



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 101/182 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K   ++ +  L+ EM   G +PDV+ +N L     +  Q+ +AF    EM+  G
Sbjct: 293 LIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSG 352

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  ID LCK   + ++++    +R +    +   Y+ LID  CK+G L  AL
Sbjct: 353 LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDAL 412

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  +  +VVTY+ ++ GL  +G+M +A DLF  M +  V PN+ T+  L+HG 
Sbjct: 413 KLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGH 472

Query: 182 IR 183
           I+
Sbjct: 473 IK 474



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P   + + LF    E+  +E A + F  M R  V    R+   F+  L K G    S + 
Sbjct: 180 PGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKF 239

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           FR +        +  Y+ +I  +CK G +  A  LFH + +  L  D+VTY+ +I G   
Sbjct: 240 FRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGK 299

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G +D++  LF +M++    P+VIT+  LI+ F +  +  K    LH+MK   + P+   
Sbjct: 300 LGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVT 359

Query: 209 VSIVVDLLAKNEI 221
            S ++D L K  +
Sbjct: 360 YSTLIDALCKEHM 372



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 96/201 (47%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            + +M+  GI   V  +N +   + +   +  A  LF +M++ G+  D  TY   IDG  
Sbjct: 239 FFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYG 298

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + ES  LF  ++ + CE D+  Y+ LI+  CK  ++  A    H +    L  +VV
Sbjct: 299 KLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVV 358

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TYS +I  L  +  + +A    LDM    ++PN  T+ +LI    +    S  ++L  +M
Sbjct: 359 TYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEM 418

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            +  V  +    + ++D L K
Sbjct: 419 LQVQVGFNVVTYTTLLDGLCK 439



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 95/203 (46%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A   +S M    + P     N     L +  + + + K F +M   G+A    TY I
Sbjct: 198 LEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNI 257

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I  +CK G +V +  LF  ++ +    DI  Y+ LIDG  K G L+ +  LF  +    
Sbjct: 258 MIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVG 317

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+      QM KA     +M+ + + PNV+T+ TLI    + +   + I
Sbjct: 318 CEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAI 377

Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
           + L  M+   + P+    + ++D
Sbjct: 378 KFLLDMRRVGLSPNEFTYTSLID 400



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 36/214 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ KNK +E AL L  E+  K IKPD++++ T+  GL   +++E    +  EM+  G
Sbjct: 468 LVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACG 527

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A++  YTI +D   K G  VE++ L + +    C+L ++                   
Sbjct: 528 IRANSVIYTIRMDAYFKTGKTVEALNLLQEM----CDLGVEV------------------ 565

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT-LIHG 180
                         +VT+ ++I GL   G +++A D F  M +  + PN +   T LI G
Sbjct: 566 -------------TIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDG 612

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             + N      +L  +M++KN++PD    + ++D
Sbjct: 613 LCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALID 646



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI+G CK   +E A++ ++ M    ++P+ V +   L  GL + + +E A KLFDEMQ 
Sbjct: 572 VLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQD 631

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             +  D   YT  IDG  K+    E++ +   +  L  ELD+ AY+ L+ GL +   ++ 
Sbjct: 632 KNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQ 691

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           A    + +    +V D +    ++   Y  G +D+A +L
Sbjct: 692 ARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIEL 730



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           I ++ Y K  +   ALNL  EM   G++  +V    L  GL +   VE A   F  M   
Sbjct: 537 IRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADF 596

Query: 58  --QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
             Q + VA      T  IDGLCKN YI  + +LF  ++      D  AY+ LIDG  K  
Sbjct: 597 NLQPNNVA----VCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHK 652

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
             + AL +   +    +  D+  Y+ ++ GL     + +A     +M    + P+ I   
Sbjct: 653 DFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCI 712

Query: 176 TLIHGFIRINEPSKVI----ELLHK------MKEKNVMPD 205
            L+  +  +    + I    ELL K      ++E+N+MP+
Sbjct: 713 RLLRKYYELGSIDEAIELHDELLKKVPLDELLEEQNLMPE 752



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 2/150 (1%)

Query: 71  IFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
            F+  L  +  I+   ++F  L   +  C      +  L     + G LE A + F  + 
Sbjct: 150 FFLKELISSRRILPGFDVFEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMT 209

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           R  +     + +  ++ L   G+ D ++  F DM    +A +V T+  +I    +  +  
Sbjct: 210 RFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMV 269

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               L H+MK+  + PD    + ++D   K
Sbjct: 270 TAKSLFHQMKQMGLTPDIVTYNSLIDGYGK 299


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+INGYCK  +++ AL     M + G+ P++VI N+L  G  +I   +   +    M+  
Sbjct: 287 IIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEF 346

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T++  ++     G + +  E+F  +     E DI A+S L  G  ++G  E A
Sbjct: 347 GVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKA 406

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L  ++ +  +  +VV ++ +I G  + G+M+ A  ++  M E  + PN+ TF TLI G
Sbjct: 407 ESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWG 466

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    EP K  ELL  M++K V P  S + +V D
Sbjct: 467 YGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVAD 500



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +C  K I  A N+  +M + G++PDVV +NTL     +  +  RA  +  EMQ + 
Sbjct: 218 LIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNR 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG---LCKSGRLE 118
           V  + RT  I I+G CK G + +++     +R      ++  ++ LI G   +  +  ++
Sbjct: 278 VMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVD 337

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            AL L      GV   DVVT+S +++   + G MDK  ++F DM +  + P++  F  L 
Sbjct: 338 EALTLMEEF--GV-KPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILA 394

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            G++R  EP K   LL  M +  V P+  I + ++ 
Sbjct: 395 KGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIIS 430



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 7/208 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    + K  +   +L S++   G+KPD V  N +     E   V+ A K+F +M+  G
Sbjct: 112 LLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRG 171

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ----AYSCLIDGLCKSGRL 117
               T T+   I G    G   E ++L   L ++  E +++     ++ LI   C   R+
Sbjct: 172 CKPTTSTFNTLIKGYGNAGMPEECLKL---LDLMSQEENVKPNDRTFNSLIRAWCNKKRI 228

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A  + + +    L  DVVTY+ +      +G+  +A  + L+M+ N V PN  T G +
Sbjct: 229 TEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGII 288

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPD 205
           I+G+ +  +    +  L++M+   V P+
Sbjct: 289 INGYCKEGKMKDALRFLYRMRNYGVHPN 316



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           +IN + ++  ++ A+ ++ +M  +G KP     NTL  G       E   KL D M Q +
Sbjct: 147 MINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEE 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  + RT+   I   C    I E+  +   +     + D+  Y+ L     ++G    A
Sbjct: 207 NVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    ++ +  T  I+I+G   +G+M  A      M    V PN++ F +LI G
Sbjct: 267 EGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           F+ I +   V E L  M+E  V PD    S +++  +
Sbjct: 327 FLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWS 363



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 87/212 (41%), Gaps = 35/212 (16%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K  E  L +++ +  +G +P ++ + TL   L    + +    L  +++++G+  D+ 
Sbjct: 84  KGKPQEAQL-IFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSV 142

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            +   I+   ++G + E++++FR ++   C+     ++ LI G   +G  E  L+L    
Sbjct: 143 FFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLD-- 200

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                                           +  EEN V PN  TF +LI  +      
Sbjct: 201 -------------------------------LMSQEEN-VKPNDRTFNSLIRAWCNKKRI 228

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++   +++KM    + PD    + +    A+N
Sbjct: 229 TEAWNVVYKMAASGLQPDVVTYNTLARAYAQN 260



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 2/158 (1%)

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           R+ T  ++ L + G   E+  +F +L        +  Y+ L+  L +  R +    L   
Sbjct: 72  RSRTKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISK 131

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L +  L  D V ++ MI+     G + +A  +F  M++    P   TF TLI G+     
Sbjct: 132 LEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGM 191

Query: 187 PSKVIELLHKM-KEKNVMP-DASIVSIVVDLLAKNEIS 222
           P + ++LL  M +E+NV P D +  S++     K  I+
Sbjct: 192 PEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRIT 229



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N +     ++    ++ +M+  GI+PD+   + L  G     + E+A  L   M + G
Sbjct: 358 IMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSG 417

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI----QAYSCLIDGLCKSGRL 117
           V  +   +T  I G C  G +  +  ++  +    CE+ I    + +  LI G  ++   
Sbjct: 418 VQPNVVIFTTIISGWCSAGKMEYASRVYEKM----CEMGICPNLKTFETLIWGYGEAKEP 473

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           + A EL   + +  +     T  ++    +  G  ++A  +  D+EE   AP V+
Sbjct: 474 QKAEELLQIMEQKGVAPVKSTIQLVADAWHALGLANEAKRIKNDVEE---APKVM 525



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/113 (19%), Positives = 55/113 (48%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           +++ + L++ L + G+ + A  +F+SL        ++TY+ ++  L    +      L  
Sbjct: 71  VRSRTKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLIS 130

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +E+N + P+ + F  +I+ F       + +++  KMK++   P  S  + ++
Sbjct: 131 KLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLI 183


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 120/218 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  +CK  E+  A +++  +   G++P VV  NTL  G  ++  ++  F+L   M   
Sbjct: 141 ILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+I I+GLCK G + E+ ELF  +       +   ++ LI G CK+ ++++A
Sbjct: 201 GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G++ + HDL  +M  N + P+ I++ TLI G
Sbjct: 261 MEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +    +EL +KM ++++  D    + ++  L +
Sbjct: 321 SCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCR 358



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 109/204 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK  +++ A  L++EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 ILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TY   I GLCK G + +  +L   + +   + D  +Y+ LIDG CK G LEIA
Sbjct: 271 GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL + + +  +  D V Y+ +I  L  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 LELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKRDSKTASKLLREMQRDGPLP 414



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN++++ A+ +Y +MLS+G+ PD++ +NTL  GL +  ++++   L DEM  +G
Sbjct: 247 LIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +YT  IDG CK G +  ++EL   +      LD  AY+ LI  LC+ GR   A 
Sbjct: 307 LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+          A  L  +M+ +   P V+T
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 112/221 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY K  +++    L S M + G +PDV  ++ L  GL +  +++ A +LF+EM  +G
Sbjct: 177 LINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  I G CKN  +  ++E+++ +       D+  Y+ LI GLCK G L+   
Sbjct: 237 LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVH 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D ++Y+ +I G   +G ++ A +L   M + ++  + + +  LI   
Sbjct: 297 DLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            R    S   ++L +M    + PD    +++++   K   S
Sbjct: 357 CREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDS 397



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 102/199 (51%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
            + Y E+L  G    +   N L     +  ++  A  +FD + + G+     ++   I+G
Sbjct: 121 WDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLING 180

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
             K G + E   L   +     + D+  YS LI+GLCK G+L+ A ELF+ +    LV +
Sbjct: 181 YIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPN 240

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
            VT++ +IHG   + ++D A +++  M    ++P++IT+ TLI+G  +  E  +V +L+ 
Sbjct: 241 GVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLID 300

Query: 196 KMKEKNVMPDASIVSIVVD 214
           +M    + PD    + ++D
Sbjct: 301 EMIMNGLKPDKISYTTLID 319



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L E    +  +  + E+   G  A    + I +   CK G +  +  +F  +        
Sbjct: 111 LMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ LI+G  K G L+    L  ++       DV TYSI+I+GL  +G++D+A++LF 
Sbjct: 171 VVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFN 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKN 219
           +M +N + PN +TF TLIHG  +  +    +E+  +M  + + PD  +  +++  L  K 
Sbjct: 231 EMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKG 290

Query: 220 EI 221
           E+
Sbjct: 291 EL 292



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/141 (19%), Positives = 69/141 (48%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           ++G++ ++V+ FR  +  K  +       +++ L +    ++  + +  +      A + 
Sbjct: 78  ESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLY 137

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            ++I++     +G+M  A  +F  + +  + P+V++F TLI+G+I++ +  +   L   M
Sbjct: 138 FFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAM 197

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
                 PD    SI+++ L K
Sbjct: 198 HASGAQPDVYTYSILINGLCK 218


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 111/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CKN + + AL ++ EM  KGI P+ +I+  +  GL +  + +   +L + M+  
Sbjct: 206 ILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVS 265

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+ T    +DG CK G I E+  L +        L I+ YS LIDGL ++ R +  
Sbjct: 266 GCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEV 325

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  DVV Y+I+I G    G +D A ++  DM +  ++P+   +  LI G
Sbjct: 326 QEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKG 385

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F  +    K   L  ++ + +  P +   +I++  + +N
Sbjct: 386 FCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRN 424



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 97/199 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y++ML     P+      L  GL +  + + A K+FDEM + G+  +T  YTI + 
Sbjct: 185 ALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILS 244

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC+     +   L  T+++  C  D    + L+DG CK G+++ A  L     +   V 
Sbjct: 245 GLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVL 304

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            +  YS +I GL+   + D+  +    M +  + P+V+ +  LI GF  +      + +L
Sbjct: 305 GIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNML 364

Query: 195 HKMKEKNVMPDASIVSIVV 213
           + M ++ + PD    + ++
Sbjct: 365 NDMTQRGLSPDTYCYNALI 383



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 38/238 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+   ++ ALN+ ++M  +G+ PD   +N L  G  ++  +++A  L  E+ ++
Sbjct: 346 ILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKN 405

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                + TYTI I G+C+NG + E+ ++F  +  L C   I  ++ LIDGLCK+G LE A
Sbjct: 406 DCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEA 465

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF+ +  G                       K   LFL + +   A  V+      +G
Sbjct: 466 RHLFYKMEIG-----------------------KNPSLFLRLSQG--ADRVMDTA---NG 497

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL-LAKNEIS---------LNSLPS 228
           F R++       +L +M +    P +++   ++     K ++S         L SLPS
Sbjct: 498 FHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPS 555



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 102/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y K+   E A+  + +M   G KPDV  +N++   + +      A  ++++M + 
Sbjct: 136 VLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKL 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+ I ++GLCKNG   +++++F  +       +   Y+ ++ GLC++ R +  
Sbjct: 196 NYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDV 255

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L +++       D +T + ++ G    GQ+D+A  L    E+      +  + +LI G
Sbjct: 256 HRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             R     +V E   KM +  + PD  + +I++
Sbjct: 316 LFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILI 348



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 90/187 (48%)

Query: 32  VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           V HN +   L +    +  +K+ +E++   +     T+++ I    K+G   ++VE F  
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           ++   C+ D+  Y+ ++  + +     +AL +++ + +     +  T+ I+++GL  +G+
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            D A  +F +M +  + PN + +  ++ G  +      V  LL+ MK     PD+   + 
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 212 VVDLLAK 218
           ++D   K
Sbjct: 277 LLDGFCK 283



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 49/241 (20%)

Query: 2   LINGYCKNKEIEGALNLYSEM-----------LSKGIKPDVVIHNTLFIGLFEIHQVERA 50
           LI+G CK  E+E A +L+ +M           LS+G    +   N    G   + + E A
Sbjct: 452 LIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTAN----GFHRVDREEDA 507

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF----RTL-------------- 92
           F++ D+M ++G    +  Y   +   C+ G +  +  L+    R+L              
Sbjct: 508 FRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEH 567

Query: 93  -------RILKCELD---------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
                  + ++C L+         I  Y+  + GLC++ R E AL++F  L    +  + 
Sbjct: 568 FEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNP 627

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            +  ++I+GL  DG ++ A D+FL   E            L+   I  ++    ++LL++
Sbjct: 628 PSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNR 687

Query: 197 M 197
           M
Sbjct: 688 M 688



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 58/123 (47%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +ID L K    +   ++   L    +     T+S++I      G  +KA + F  M++  
Sbjct: 102 VIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFG 161

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             P+V T+ +++H  ++       + + ++M + N  P+ +   I+++ L KN  + ++L
Sbjct: 162 CKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDAL 221

Query: 227 PSF 229
             F
Sbjct: 222 KMF 224


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++E    L  +M+  G+KP+ + +N L  GL    ++     L DEM    
Sbjct: 104 MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 163

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEI 119
           +  D  TY+I  DGL +NG     + LF   + LK  + I  Y+C  L++GLCK G++ I
Sbjct: 164 MVPDGFTYSILFDGLSRNGDSKAMLSLFG--KYLKNGVTIGDYTCSILLNGLCKDGKVSI 221

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E+  SL    LV   V Y+ +I+G    G+++ A   F  M+   + P+ IT+  LI+
Sbjct: 222 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALIN 281

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +    +   +LL +M++  V P     + ++D   +
Sbjct: 282 GLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGR 320



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 108/205 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+  E+EGA + + +M S+ IKPD + +N L  GL +  ++  A  L  EMQ +G
Sbjct: 244 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     T+   ID   + G + +   +   ++    + ++ +Y  +++  CK+G++  A+
Sbjct: 304 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    ++ +   Y+ +I      G  D+A  L   M+ N ++P+++T+  LI G 
Sbjct: 364 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 423

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
              ++ S+  E+++ +    ++PDA
Sbjct: 424 CNQSQISEAEEIINSLSNHRLIPDA 448



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 2/226 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G  +      A+ ++ EM  + + P+ + +NT+  G  +   +E  F+L D+M   
Sbjct: 68  VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 127

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + + GLC+ G + E+  L   +   K   D   YS L DGL ++G  +  
Sbjct: 128 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 187

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF   L  GV + D  T SI+++GL  DG++  A ++   +    + P  + + TLI+
Sbjct: 188 LSLFGKYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 246

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           G+ +  E         +MK +++ PD    + +++ L K E   N+
Sbjct: 247 GYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNA 292



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK+ ++  A  +   +++ G+ P  VI+NTL  G  +  ++E AF  F +M+  
Sbjct: 208 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I+GLCK   I  + +L   ++       ++ ++ LID   ++G+LE  
Sbjct: 268 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKC 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  +VV+Y  +++    +G++ +A  +  DM    V PN   +  +I  
Sbjct: 328 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS---IVVDLLAKNEIS 222
           ++      +   L+ KMK   + P  SIV+   ++  L  +++IS
Sbjct: 388 YVEHGPNDQAFILVEKMKSNGISP--SIVTYNLLIKGLCNQSQIS 430



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 35/249 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C+   +     L  EM S+ + PD   ++ LF GL      +    LF +  ++
Sbjct: 138 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 197

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--------RILKCEL------------- 99
           GV     T +I ++GLCK+G +  + E+ ++L        R++   L             
Sbjct: 198 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 257

Query: 100 --------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                         D   Y+ LI+GLCK+ R+  A +L   +    +   V T++ +I  
Sbjct: 258 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 317

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               GQ++K   +  +M+EN + PNV+++G++++ F +  +  + + +L  M  K+V+P+
Sbjct: 318 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377

Query: 206 ASIVSIVVD 214
           A + + ++D
Sbjct: 378 AQVYNAIID 386



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 2/240 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y +  ++E    + SEM   G+KP+VV + ++     +  ++  A  + D+M    
Sbjct: 314 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + + Y   ID   ++G   ++  L   ++       I  Y+ LI GLC   ++  A 
Sbjct: 374 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ +SL    L+ D V+Y+ +I      G +DKA DL   M +  +   V T+  LI G 
Sbjct: 434 EIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 493

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK--NEISLNSLPSFTVHERQEEVD 239
                 +++  L  KM + NV+P  +I +I+V+  +K  NEI    L    + +R    D
Sbjct: 494 GGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 553



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 4/184 (2%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYS 105
           V RAF +   +   G   DT  +   +      G + E+V + R + R      +  +Y+
Sbjct: 11  VRRAFGI---LASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYN 67

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            +I G+ ++GR   A+E+F  +    ++ + +TY+ MI G    G ++    L   M  +
Sbjct: 68  VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 127

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            + PN IT+  L+ G  R     +   LL +M  + ++PD    SI+ D L++N  S   
Sbjct: 128 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 187

Query: 226 LPSF 229
           L  F
Sbjct: 188 LSLF 191



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C   +I  A  + + + +  + PD V +NTL         +++A  L   M + 
Sbjct: 418 LLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 477

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+ +  RTY   I GL   G + E   L++ +
Sbjct: 478 GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKM 509


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 112/209 (53%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  +++GA  L+  M  KG  P    +N L  GL    +   A  +   M+R+GV     
Sbjct: 255 RAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVM 314

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   +DGL + G + ++ ++   +       +   YS +I G CKSG ++ AL+++ ++
Sbjct: 315 TYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAM 374

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  +VV YS MI GL N G+M +A  LF +M  +  APN+IT+G++I G+ +I + 
Sbjct: 375 VASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDT 434

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           S+ + +  +M     +P+A   SI+++ L
Sbjct: 435 SRALSVWEEMIGAGCVPNAVSYSILINGL 463



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+CK+ EI+ AL ++  M++  ++P+VV+++ +  GL    ++  A  LF EM    
Sbjct: 354 VITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSK 413

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TY   I G  K G    ++ ++  +    C  +  +YS LI+GLC  GRL+ A+
Sbjct: 414 CAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAM 473

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-PNVITFGTLIH 179
            ++ H L RG    D + Y+ MI GL   G +D    LF DM  +  A P+VI++  L+ 
Sbjct: 474 MVWKHMLDRGC-APDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLD 532

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G +   +  + ++LL++M ++   PD    +I +      E
Sbjct: 533 GLLLAKDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAGE 573



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 99/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G         A+ +   M  +G+ P V+ +  +  GL    +V+ A+K+ +EM+R+
Sbjct: 283 VLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERN 342

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +   Y+  I G CK+G I  +++++  +       ++  YS +I GL   G++  A
Sbjct: 343 GLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEA 402

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +       +++TY  +I G +  G   +A  ++ +M      PN +++  LI+G
Sbjct: 403 ELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILING 462

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
              +      + +   M ++   PD
Sbjct: 463 LCNVGRLKDAMMVWKHMLDRGCAPD 487



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 2/211 (0%)

Query: 8   KNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
             + ++ AL +  E++    + PD   ++T+   L +  +V+ A  L  EM  DGV A  
Sbjct: 185 PGRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVA-A 243

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   +  + + G +  + +LF  +++  C      Y+ L+ GL   GR   A+ +   
Sbjct: 244 EAFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRR 303

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + R  +V  V+TY  ++ GL   G++  A  +  +ME N +A N   + T+I GF +  E
Sbjct: 304 MEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGE 363

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
               +++   M    V P+  + S ++  LA
Sbjct: 364 IDCALKVWEAMVASPVRPNVVLYSAMIGGLA 394



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY+  +  L   G + ++V L   + +    +  +A++ ++  + ++G ++ A 
Sbjct: 205 LAPDKFTYSTVVSALADAGRVDDAVALVHEM-VADGVVAAEAFNPVLRAMLRAGDVKGAA 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +     V    TY++++HGL   G+   A  +   ME   V P V+T+G ++ G 
Sbjct: 264 KLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGL 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +R        ++  +M+   +  +  + S V+    K+
Sbjct: 324 VRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKS 361



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C    ++ A+ ++  ML +G  PD + + ++  GL     V+   +LF +M   
Sbjct: 458 ILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLAS 517

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G A  D  +Y + +DGL     +  +++L   +    C+ D
Sbjct: 518 GHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPD 558


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIK-PDVVIHNTLFIGLFEIHQVERAFKLFDEM-Q 58
           IL+  +CKN +++ A  +  EM +     P++V ++TL  GL    +V+ AF LF+EM  
Sbjct: 238 ILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVS 297

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           RD +  D  TY + I+G C+ G    +  + + ++   C  ++  YS L+DGLCK G+LE
Sbjct: 298 RDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLE 357

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +    L  D VTY+ +I+ L  +G+ D+A +L  +M+EN    + +TF  L+
Sbjct: 358 DAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLL 417

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G  R  +  + ++++ K+ ++ V  +     IV++ L +
Sbjct: 418 GGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQ 457



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+C+  + + A N+   M S G  P+V  ++ L  GL ++ ++E A  +  E++  
Sbjct: 310 VLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGS 369

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TYT  I+ LC+NG   E++EL   ++   C+ D   ++ L+ GLC+ G+ E A
Sbjct: 370 GLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEA 429

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++   LP+  +  +  +Y I+++ L    ++ +A +L   M      P+  T   L+  
Sbjct: 430 LDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVC 489

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +          L  + E    P      +++ L+ +
Sbjct: 490 LCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICR 527



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 107/204 (52%), Gaps = 1/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L++G C+N  ++ A +L+ EM+S+  I PD + +N L  G     + +RA  +   M+ +
Sbjct: 275 LMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSN 334

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y+  +DGLCK G + ++  +   ++    + D   Y+ LI+ LC++G+ + A
Sbjct: 335 GCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEA 394

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +      AD VT+++++ GL  +G+ ++A D+   + +  V  N  ++  +++ 
Sbjct: 395 IELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNS 454

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             +  E  +  ELL  M  +   P
Sbjct: 455 LTQKCELKRAKELLGLMLRRGFQP 478



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 3/195 (1%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYIVESV 86
           KP     +T    L + ++V+ A KL    +RD     +   + I +   CKNG +  + 
Sbjct: 194 KPSPKALSTCLNLLLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAF 253

Query: 87  ELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIH 144
           E+   +R  +    ++  YS L+DGLC++GR++ A +LF  +  R  +V D +TY+++I+
Sbjct: 254 EIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLIN 313

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G    G+ D+A ++   M+ N   PNV  +  L+ G  ++ +      +L ++K   + P
Sbjct: 314 GFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKP 373

Query: 205 DASIVSIVVDLLAKN 219
           DA   + +++ L +N
Sbjct: 374 DAVTYTSLINFLCRN 388



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 95/196 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  ++E A  + +E+   G+KPD V + +L   L    + + A +L +EM+ +G
Sbjct: 346 LVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENG 405

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD+ T+ + + GLC+ G   E++++   L      L+  +Y  +++ L +   L+ A 
Sbjct: 406 CQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAK 465

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R        T + ++  L   G +D A     D+ E    P + T+  LI   
Sbjct: 466 ELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLI 525

Query: 182 IRINEPSKVIELLHKM 197
            R  +   V ELL ++
Sbjct: 526 CRERKLLYVFELLDEL 541



 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 57/127 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C+  + E AL++  ++  +G+  +   +  +   L +  +++RA +L   M R 
Sbjct: 415 VLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRR 474

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T    +  LCK G + ++      L  +  +  ++ +  LI  +C+  +L   
Sbjct: 475 GFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICRERKLLYV 534

Query: 121 LELFHSL 127
            EL   L
Sbjct: 535 FELLDEL 541


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING  +  ++E   +L+S  L++G+K DVVI +++      +  + +A +++  M ++
Sbjct: 315 ILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY+I I+GLC+NG ++E+  +F  +     E  +  YS LIDG CKS  L   
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDG 434

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + R   V DVV  S++I+GL   G MD+A   F    +  +  N   F  LI G
Sbjct: 435 FGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDG 494

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+      +++   M    V+PD    +++V  LA+
Sbjct: 495 CFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAE 532



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 111/205 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN + +   +E  L L  E++  G++PD+V +NT+  G   +    +A KLF+ ++  
Sbjct: 595 VLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCG 654

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+TI ID  CK+G + +++ +F ++     E +I  YSCLIDG  K+   E A
Sbjct: 655 RTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESA 714

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +  ++V+YSI+I GL   G M++A   F       + P+VI +G LI G
Sbjct: 715 FELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRG 774

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + ++   ++ + L   M    +MPD
Sbjct: 775 YCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G  +   ++ AL L+ ++L KG  PD +I+ TL  G  +        ++F  MQ +
Sbjct: 525 VLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSN 584

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + I+   + G +   +EL R +     E DI  Y+ +I G C       A
Sbjct: 585 GIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKA 644

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  L  G    + +T++I+I     DG+MD A  +F  M E    PN++T+  LI G
Sbjct: 645 IKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDG 704

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +        EL  KM    V P+    SI++D L K
Sbjct: 705 YFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCK 742



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 2/180 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ YCK+  ++ A+ ++S ML +G +P+++ ++ L  G F+    E AF+L+++M  D
Sbjct: 665 ILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGD 724

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ +  +Y+I IDGLCK G + E+   F+         D+ AY  LI G CK GRL  A
Sbjct: 725 RVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEA 784

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + L+ H L  G++  D++  ++  +G + D Q      +F +   N +   V + G ++ 
Sbjct: 785 MMLYDHMLVNGIMPDDLLQKALAEYG-FQDSQASIYSTVFPESPLNLLVCPVSSMGDILQ 843



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C   +I  A + +  M+  G  P++V  +TL     +  +++ AF L++ M   G
Sbjct: 246 ILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKG 305

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+I I+GL + G + E   LF        ++D+  +S ++D   + G L  A+
Sbjct: 306 IVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAI 365

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  + +  +  +VVTYSI+I+GL  +G++ +A  +F  + +  + P+V+T+ +LI GF
Sbjct: 366 EVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGF 425

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +         L   M  K  +PD  + S++++ L++
Sbjct: 426 CKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSR 462



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI+G+CK++ +     LY  ML KG  PDVV+ + L  GL     ++ A + F +     
Sbjct: 421 LIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRG 480

Query: 58  --------------------QRDG-----------VAADTRTYTIFIDGLCKNGYIVESV 86
                                RDG           V  D  TYT+ + GL + G + E++
Sbjct: 481 LTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEAL 540

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  L       D   Y  LIDG CK       L++F  +    +  D+  Y+++I+  
Sbjct: 541 ALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMF 600

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           + +G ++   +L  ++ +  + P+++T+ T+I G+  +   SK I+L   +K     P+A
Sbjct: 601 FREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNA 660

Query: 207 SIVSIVVDLLAKN 219
              +I++D   K+
Sbjct: 661 ITFTILIDAYCKD 673



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            + N + K  E+E  LN +  ++ +G+ P +V  N +  GL   +Q+  A   FD M R 
Sbjct: 210 FVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRS 269

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  T++  I+  CK   + E+  L+  +       D+  YS LI+GL ++G+LE  
Sbjct: 270 GPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEG 329

Query: 121 LELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             LF  +L RGV + DVV +S ++      G + KA +++  M +  ++PNV+T+  LI+
Sbjct: 330 NSLFSMALARGVKM-DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILIN 388

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G  R     +   +  ++ ++ + P     S ++D   K+E
Sbjct: 389 GLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSE 429



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 30/190 (15%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R+  +  +  Y+  +   C+NG +  +V+ F  +  +   +   A S ++D L  S R++
Sbjct: 133 RNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRID 192

Query: 119 IALELFHSLPRGV------------------------------LVADVVTYSIMIHGLYN 148
           + LE +  + +G+                              LV  +V  + ++ GL  
Sbjct: 193 VILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCM 252

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
             Q+  A D F  M  +  +PN++TF TLI+ + +     +   L + M EK ++PD  I
Sbjct: 253 GNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVI 312

Query: 209 VSIVVDLLAK 218
            SI+++ L +
Sbjct: 313 YSILINGLFR 322


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 113/225 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CKN  ++ A  ++  M+  G  P+ V ++ L  GL    ++E A  + +EM   G
Sbjct: 243 LIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      YTI I  LC  G   E+V+L   ++   C  ++Q Y+ LI GL + G+ E+A+
Sbjct: 303 IEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAI 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++H +    LV   VTYS +I+ LY +G+ + A  +F  M  +   PN  T+  +I GF
Sbjct: 363 GVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGF 422

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             I    K   +  +M +    P+    +I++ +  K     N++
Sbjct: 423 CSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAM 467



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN        E AL ++  MLS    P+   +N +  G   I  +++A  +FD+M + G
Sbjct: 383 LINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY I I    K GY+  ++ L   ++    +LD   Y+ LI G  + G+LE A 
Sbjct: 443 PSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAF 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  +VVTY+ +I+G     ++D A  LF  M E+   P+  T+  +I GF
Sbjct: 503 SLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGF 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N  S+      KM ++ ++P+    +  +D L KN
Sbjct: 563 SKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKN 600



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 113/222 (50%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  ++ + E A+ +Y +ML+ G+ P  V ++ L   L+   + E A  +F+ M    
Sbjct: 348 LISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHD 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +T TY + I G C  GYI ++  +F  +       ++  Y+ +I    K G +  A+
Sbjct: 408 SLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAM 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D  TY+ +I G    G+++ A  LF +M E+ ++PNV+T+  +I+G+
Sbjct: 468 RLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGY 527

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEIS 222
           + + +    + L  KM E   +P +   ++++   +K N IS
Sbjct: 528 LTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRIS 569



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C    I+ A  ++ +ML  G  P+V+ +N +    F+   +  A +L + M+ +
Sbjct: 417 VIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGN 476

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  DT TY   I G  + G +  +  LF  +       ++  Y+ +I+G     +++ A
Sbjct: 477 GLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDA 536

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +     V    TY++MI G     ++ +A +    M +  + PNVIT+ + I G
Sbjct: 537 LALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    S   ++ H+MK+++  P+    S ++D L +
Sbjct: 597 LCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQ 634



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 3/230 (1%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++Y EML+ GI+P++   N +   L    +V+ A  +   +   G   DT TYT  I G 
Sbjct: 188 DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGH 247

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           CKNG +  + E+F  +    C+ +   YS LI+GLC  GRLE A+++   +    +   V
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
             Y+I I  L + G+  +A  L   M++    PNV T+  LI G  R  +    I + HK
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHK 367

Query: 197 MKEKNVMPDASIVSIVVDLL---AKNEISLNSLPSFTVHERQEEVDESNV 243
           M    ++P A   S +++ L    + E +L        H+     +  NV
Sbjct: 368 MLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNV 417



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+ K   I  A N   +M+ +G+ P+V+ + +   GL +  +   AFK+F EM++ 
Sbjct: 557 MMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKR 616

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY+  IDGLC+ G   ++  L        CE ++  Y+ L+ GLC  GR   A
Sbjct: 617 DYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEA 672

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L  S+ +  L      Y  ++ G   + +++ A  +F  M      P +  +  LI  
Sbjct: 673 DQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICA 732

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEISLN 224
             + N   K   +   M +K+   D  + ++++D LL + E  L+
Sbjct: 733 LCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLS 777



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGY    +++ AL L+ +M+  G  P    +N +  G  + +++  A     +M + G
Sbjct: 523 IINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQG 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT FIDGLCKNG    + ++F  ++      ++  YS LIDGLC+ G+ E A 
Sbjct: 583 LLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAE 642

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L  G    +V TY+ ++ GL   G+  +A  L   M++  + P+   +  L+ G 
Sbjct: 643 RL---LDDGC-EPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQ 698

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E    +++   M      P  S    ++  L K
Sbjct: 699 CKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCK 735



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 4/200 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G CKN     A  ++ EM  +   P++  +++L  GL +  Q E A +L D    DG
Sbjct: 593 FIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD----DG 648

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  + GLC  G   E+ +L  +++    +   + Y  L+ G CK+  +E AL
Sbjct: 649 CEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESAL 708

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+        +  Y  +I  L       KA  +F  M +     + + +  L+ G 
Sbjct: 709 KIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGL 768

Query: 182 IRINEPSKVIELLHKMKEKN 201
           ++  E    +ELLH M+ +N
Sbjct: 769 LKEGETDLSLELLHVMESRN 788



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 2/181 (1%)

Query: 39  IGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE 98
           +G F++  + R   ++ EM   G+  +  T+   I  LC  G + E+  +   +      
Sbjct: 177 LGKFDMDGLGR--DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGAC 234

Query: 99  LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
            D   Y+ LI G CK+G L++A E+F  + +     + VTYS +I+GL ++G++++A D+
Sbjct: 235 PDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDM 294

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +M +  + P V  +   I          + ++LL KMK++   P+    + ++  L++
Sbjct: 295 LEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSR 354

Query: 219 N 219
           +
Sbjct: 355 D 355



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CKN E+E AL ++  M++ G +P +  +  L   L + +  ++A  +F  M +  
Sbjct: 694 LLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKH 753

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA 103
             +D   +T+ +DGL K G    S+EL   +    C L+ Q 
Sbjct: 754 WNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQT 795


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK  +++ A + +  M+  G  PD V +  L   LF+  + E+  ++F+EM   
Sbjct: 127 VVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSK 186

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TY   ++G CK G I +++ L R L+          YS LIDGLCK  R + A
Sbjct: 187 GHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEA 246

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF      V   DV+ Y+  I GL   G++D+A  + + M E   AP+ +++  +I+ 
Sbjct: 247 RELFEMAAGDV--QDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS 304

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             + N  S+  EL+ +  E+  MP   + +++VD L K+ 
Sbjct: 305 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSR 344



 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+G CK  +++ A  ++ +M+  G  PD V +N +   L + ++V  A +L D+     
Sbjct: 266 FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERK 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVES-VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                   T+ +DGLCK+  + E+ V L R L        +  YS +IDGLCK+ RL+ A
Sbjct: 326 CMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDA 385

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + R   V DVVTY+ +I      G++D+A +LF  M E   A +V+ +  LI G
Sbjct: 386 YVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRG 445

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R  +  + I ++ +M  + + P+   +S +VD L K
Sbjct: 446 YCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCK 483



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 2/211 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK+  +  A  L  + + +   P V +   L  GL +  +VE A  + + M   
Sbjct: 300 VIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLET 359

Query: 61  G-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G  A    TY+  IDGLCK   + ++  + + +R   C  D+  Y+ +ID  CK GRL+ 
Sbjct: 360 GDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDE 419

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +       DVV Y+I+I G     ++D+A  +  +M    + PNV++  T++ 
Sbjct: 420 ARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVD 479

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           G  + +   +   L+ KM  ++ +PD+  VS
Sbjct: 480 GLCKESRVEEARLLMEKMNFES-LPDSDPVS 509



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + +N  C  +    A  ++ + L    +PD   + TL  G  +  Q+ +A  L  EM+  
Sbjct: 26  VFVNDGCHRE----AYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAA 81

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T+   I  LC+  +  +++++F  +  +K + D   Y+ +I  LCK  +L++A
Sbjct: 82  GITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLA 141

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  + +   + D VTY++++H L+   + ++ H +F +M     +P ++T+ T+++G
Sbjct: 142 ASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNG 201

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +     + + L+ ++K     P  S+ S ++D L K++
Sbjct: 202 YCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHD 241



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R G   +T T    ++    +G   E+  +F+   +     D   Y  LI G CK+ ++ 
Sbjct: 10  RPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIP 69

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ L   +    +   +VT+  +I  L      DKA  +F  M +  V P+   +  +I
Sbjct: 70  QAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVI 129

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +IN+         +M +   +PD    +++V  L K
Sbjct: 130 GHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFK 169


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-Q 58
           IL+  +C+  +I+ A  +  EM  SK   P+V+ ++TL  GL    +++ AF+LF+EM  
Sbjct: 278 ILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVS 337

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           +D +  D  TY + I+G C+ G    +  +   ++   C  ++  YS L+DGLCK+G+L+
Sbjct: 338 KDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQ 397

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +    L  D +TY+ +I+    +GQ+D+A +L  +M+EN    + +TF  ++
Sbjct: 398 DAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVIL 457

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            G  R     + ++++ K+ ++ V  +     IV++ L +N
Sbjct: 458 GGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQN 498



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 109/220 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+C+  + + A N+   M + G  P+V  ++ L  GL +  +++ A  +  EM+  
Sbjct: 350 VLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSS 409

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TYT  I+   +NG I E++EL   ++   C+ D   ++ ++ GLC+ GR + A
Sbjct: 410 GLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEA 469

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++   LP+  +  +  +Y I+++ L  + ++ KA+ L   M      P+  T   L+  
Sbjct: 470 LDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELLVR 529

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +    +     L  + +    P      +++DL+ ++ 
Sbjct: 530 LCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLICRDR 569



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 107/204 (52%), Gaps = 1/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L++G C+N  ++ A  L+ EM+SK  I PD + +N L  G     + +RA  + + M+ +
Sbjct: 315 LMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNN 374

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y+  +DGLCK G + ++  +   ++    + D   Y+ LI+   ++G+++ A
Sbjct: 375 GCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEA 434

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +      AD VT+++++ GL  +G+ D+A D+   + +  V  N  ++  +++ 
Sbjct: 435 IELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNS 494

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             +  E  K  +LL  M  +  +P
Sbjct: 495 LTQNCELRKANKLLGLMLSRGFVP 518



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 94/200 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  +++ A  + +EM S G+KPD + + +L        Q++ A +L  EM+ + 
Sbjct: 386 LVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKEND 445

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             ADT T+ + + GLC+ G   E++++   L      L+  +Y  +++ L ++  L  A 
Sbjct: 446 CQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKAN 505

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +     V    T + ++  L  +G  + A     D+ +    P   ++  LI   
Sbjct: 506 KLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLI 565

Query: 182 IRINEPSKVIELLHKMKEKN 201
            R  +   V ELL ++   N
Sbjct: 566 CRDRKLLYVFELLDELVTSN 585


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++E    L  +M+  G+KP+ + +N L  GL    ++     L DEM    
Sbjct: 56  MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 115

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEI 119
           +  D  TY+I  DGL +NG     + LF   + LK  + I  Y+C  L++GLCK G++ I
Sbjct: 116 MVPDGFTYSILFDGLSRNGDSKAMLSLFG--KYLKNGVTIGDYTCSILLNGLCKDGKVSI 173

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E+  SL    LV   V Y+ +I+G    G+++ A   F  M+   + P+ IT+  LI+
Sbjct: 174 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALIN 233

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +    +   +LL +M++  V P     + ++D   +
Sbjct: 234 GLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGR 272



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 108/205 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+  E+EGA + + +M S+ IKPD + +N L  GL +  ++  A  L  EMQ +G
Sbjct: 196 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     T+   ID   + G + +   +   ++    + ++ +Y  +++  CK+G++  A+
Sbjct: 256 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    ++ +   Y+ +I      G  D+A  L   M+ N ++P+++T+  LI G 
Sbjct: 316 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
              ++ S+  E+++ +    ++PDA
Sbjct: 376 CNQSQISEAEEIINSLSNHRLIPDA 400



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 2/226 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G  +      A+ ++ EM  + + P+ + +NT+  G  +   +E  F+L D+M   
Sbjct: 20  VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 79

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + + GLC+ G + E+  L   +   K   D   YS L DGL ++G  +  
Sbjct: 80  GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 139

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF   L  GV + D  T SI+++GL  DG++  A ++   +    + P  + + TLI+
Sbjct: 140 LSLFGKYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 198

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           G+ +  E         +MK +++ PD    + +++ L K E   N+
Sbjct: 199 GYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNA 244



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK+ ++  A  +   +++ G+ P  VI+NTL  G  +  ++E AF  F +M+  
Sbjct: 160 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR 219

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I+GLCK   I  + +L   ++       ++ ++ LID   ++G+LE  
Sbjct: 220 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKC 279

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  +VV+Y  +++    +G++ +A  +  DM    V PN   +  +I  
Sbjct: 280 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 339

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS---IVVDLLAKNEIS 222
           ++      +   L+ KMK   + P  SIV+   ++  L  +++IS
Sbjct: 340 YVEHGPNDQAFILVEKMKSNGISP--SIVTYNLLIKGLCNQSQIS 382



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 35/249 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C+   +     L  EM S+ + PD   ++ LF GL      +    LF +  ++
Sbjct: 90  VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 149

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--------RILKCEL------------- 99
           GV     T +I ++GLCK+G +  + E+ ++L        R++   L             
Sbjct: 150 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 209

Query: 100 --------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                         D   Y+ LI+GLCK+ R+  A +L   +    +   V T++ +I  
Sbjct: 210 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 269

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               GQ++K   +  +M+EN + PNV+++G++++ F +  +  + + +L  M  K+V+P+
Sbjct: 270 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329

Query: 206 ASIVSIVVD 214
           A + + ++D
Sbjct: 330 AQVYNAIID 338



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 2/240 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y +  ++E    + SEM   G+KP+VV + ++     +  ++  A  + D+M    
Sbjct: 266 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + + Y   ID   ++G   ++  L   ++       I  Y+ LI GLC   ++  A 
Sbjct: 326 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ +SL    L+ D V+Y+ +I      G +DKA DL   M +  +   V T+  LI G 
Sbjct: 386 EIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK--NEISLNSLPSFTVHERQEEVD 239
                 +++  L  KM + NV+P  +I +I+V+  +K  NEI    L    + +R    D
Sbjct: 446 GGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 505



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 61/117 (52%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +Y+ +I G+ ++GR   A+E+F  +    ++ + +TY+ MI G    G ++    L   M
Sbjct: 17  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 76

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             + + PN IT+  L+ G  R     +   LL +M  + ++PD    SI+ D L++N
Sbjct: 77  VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 133



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C   +I  A  + + + +  + PD V +NTL         +++A  L   M + 
Sbjct: 370 LLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 429

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+ +  RTY   I GL   G + E   L++ +
Sbjct: 430 GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKM 461


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 114/211 (54%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  ++  AL ++  M  K   PDVV +++L   L +  +VE A+  F+     G   +  
Sbjct: 785 KGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVG 844

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y+  ID   K G +  ++ELF  ++  +C  +I  Y+ L+ GL K+GRL +A +L   +
Sbjct: 845 VYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEM 904

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +   V D+VTY+I+I G+   G +D+A   F  M+E  + P+VITF +LI    ++++ 
Sbjct: 905 EKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKL 964

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  EL   M+E+   P     ++++D+L +
Sbjct: 965 LEACELFDSMEEEGYNPSVVTYNVLIDILGR 995



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 118/218 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K   ++ A++L  EM  +G +P VV +++L    ++  Q E +  LFDEM R G
Sbjct: 569 LVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKG 628

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TY++ I+ LCK+  + +++++F  ++    E  +  Y  L+  L K  +++ AL
Sbjct: 629 CVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFAL 688

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+ L    LV D   Y+IM++GL    ++D+A  L   M+   + P++ T+ +L+ G 
Sbjct: 689 QIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGL 748

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     +   +  KM E+   PD    + ++D+L K 
Sbjct: 749 GKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKG 786



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG  K+  ++ A  L   M ++ I PD+  + +L  GL +  ++E AF +F +M  +
Sbjct: 708 IMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEE 767

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   YT  +D L K G +  ++ +FR +   +C  D+  YS LID L K GR+E A
Sbjct: 768 GHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEA 827

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
              F +S+ +G    +V  YS +I      G +D+A +LF +M+     PN++T+  L+ 
Sbjct: 828 YYFFENSISKGC-TPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLS 886

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +    +   +LL +M++   +PD    +I++D + K
Sbjct: 887 GLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGK 925



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 120/217 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K+++I+ AL +++E+    + PD  ++N +  GL + ++V+ A KL D M+   
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN 733

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  +DGL K+G + E+  +F  +     E D+ AY+ L+D L K G+L  AL
Sbjct: 734 ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHAL 793

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F ++ +   V DVVTYS +I  L  +G++++A+  F +       PNV  + +LI  F
Sbjct: 794 IIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSF 853

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + +EL  +M+ +   P+    + ++  LAK
Sbjct: 854 GKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAK 890



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF------------------IGLFE 43
           L+  +     + GAL ++++M S G  P   ++N +                   +G F 
Sbjct: 223 LLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFR 282

Query: 44  IHQVERAFKLF-----------------DEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I    + F++F                  EM + G+     T+T+ ID L K+G I E+ 
Sbjct: 283 IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEAC 342

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           + F  ++ L+C  ++  Y+ L++GL K+GRLE A E+F  +       D + Y+ +I GL
Sbjct: 343 KFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGL 402

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+ D A  LF +M++  + PN+ T+  +I    +     +  +L H +KE+  +PD 
Sbjct: 403 GKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDV 462

Query: 207 SIVSIVVDLLAKN 219
              + ++D+L K 
Sbjct: 463 FTYNTLIDVLGKG 475



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K+  +E A N++++M  +G +PDVV + +L   L +  ++  A  +F  M +  
Sbjct: 744 LLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR 803

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  ID L K G + E+   F       C  ++  YS LID   K G ++ AL
Sbjct: 804 CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRAL 863

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  + R     ++VTY+ ++ GL   G+++ A  L  +ME+    P+++T+  LI G 
Sbjct: 864 ELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGV 923

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++    +      +MKEK ++PD    + +++ L K
Sbjct: 924 GKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGK 960



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 115/225 (51%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+   K   +E A   +   +SKG  P+V ++++L     +   V+RA +LF+EMQR  
Sbjct: 814  LIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ 873

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +  TY   + GL K G +  + +L   +  + C  D+  Y+ LIDG+ K G ++ A 
Sbjct: 874  CPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAE 933

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
              F  +    +V DV+T++ +I  L    ++ +A +LF  MEE    P+V+T+  LI   
Sbjct: 934  SYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDIL 993

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             R  +  +   + H+MK K  MPD   + I+  +L+  E   ++L
Sbjct: 994  GRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVREQQFHAL 1038



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 105/201 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I ++ + ++  ++ A     EM+  GI P V     L   L +   ++ A K F+ M+  
Sbjct: 292 IFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL 351

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + +  TYT  ++GL K G + E+ E+F  ++   C  D  AY+ LIDGL K+G  ++A
Sbjct: 352 RCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMA 411

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    LV ++ TY+IMI  L   G+  +A  LF D++E    P+V T+ TLI  
Sbjct: 412 CGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDV 471

Query: 181 FIRINEPSKVIELLHKMKEKN 201
             +  +  KV+ ++ +M EK 
Sbjct: 472 LGKGGQMDKVLAIIKEMVEKG 492



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 120/236 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN  CK+ +++ AL+++  M  +G++P +  + TL   L +  +++ A ++F+E+Q  
Sbjct: 638 LVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQES 697

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  DT  Y I ++GL K+  + E+ +L  +++      D+  Y+ L+DGL KSGRLE A
Sbjct: 698 SLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEA 757

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +       DVV Y+ ++  L   G++  A  +F  M +    P+V+T+ +LI  
Sbjct: 758 FNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDS 817

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             +     +          K   P+  + S ++D   K  +   +L  F   +R++
Sbjct: 818 LGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ 873



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 2/209 (0%)

Query: 12  IEGALNLYSEMLSKGIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           IEGA +   E  S G K    + +NTL         V+ A KL + M++        TYT
Sbjct: 509 IEGA-DRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYT 567

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             +DGL K G + E+V L R +    CE  +  YS L+    K  + E +L LF  + R 
Sbjct: 568 TLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK 627

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
             VADV TYS++I+ L     +D+A D+F  M+E  + P +  + TL+   ++  +    
Sbjct: 628 GCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFA 687

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +++ ++++E +++PD  + +I+V+ L K+
Sbjct: 688 LQIFNELQESSLVPDTFVYNIMVNGLVKS 716



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +  N  ++ A+ L   M      P VV + TL  GL +  +++ A  L  EM++ G
Sbjct: 534 LMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQG 593

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY+  +    K     ES+ LF  +    C  D+  YS +I+ LCKS  ++ AL
Sbjct: 594 CEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQAL 653

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    +   +  Y  ++  L  D ++D A  +F +++E+++ P+   +  +++G 
Sbjct: 654 DVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGL 713

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++ N   +  +L+  MK +N++PD    + ++D L K+
Sbjct: 714 VKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKS 751



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I      +E +  + + + M  +G +  + +  +L       + V  A ++F++M+  
Sbjct: 187 LMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSF 246

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T  Y   ++ L K G+   +V +F  L   + + D Q +   +    +SGRL+ A
Sbjct: 247 GCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPA 306

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +   V T++++I  L   G +D+A   F  M+    +PNV+T+ TL++G
Sbjct: 307 AEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNG 366

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  E+  +MKE N  PDA   + ++D L K
Sbjct: 367 LAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGK 404



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  + K  + E +L+L+ EM+ KG   DV  ++ +   L +   V++A  +F  M+ +G
Sbjct: 604 LMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEG 663

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   +  L K+  I  ++++F  L+      D   Y+ +++GL KS R++ A 
Sbjct: 664 MEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEAC 723

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  S+    ++ D+ TY+ ++ GL   G++++A ++F  M E    P+V+ + +L+   
Sbjct: 724 KLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVL 783

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK------------NEISLNSLPSF 229
            +  + S  + +   M +K  +PD    S ++D L K            N IS    P+ 
Sbjct: 784 GKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNV 843

Query: 230 TVH 232
            V+
Sbjct: 844 GVY 846



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 31/259 (11%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  K   +E A  ++ EM      PD + +NTL  GL +  + + A  LF EM+  G
Sbjct: 363 LVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRG 422

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + RTY I I  L K G   E+ +LF  L+      D+  Y+ LID L K G+++  L
Sbjct: 423 LVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVL 482

Query: 122 ELFHSL------------------------------PR-GVLVADVVTYSIMIHGLYNDG 150
            +   +                              P  G      +TY+ ++    ++G
Sbjct: 483 AIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNG 542

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            +D+A  L   M+++   P V+T+ TL+ G  +     + + LL +M+++   P     S
Sbjct: 543 HVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYS 602

Query: 211 IVVDLLAKNEISLNSLPSF 229
            ++    K +    SL  F
Sbjct: 603 SLMASFYKRDQEEESLSLF 621



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILI+G  K   ++ A + +  M  KGI PDV+   +L   L ++ ++  A +LFD M+ +
Sbjct: 918  ILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEE 977

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G      TY + ID L + G + E+  +F  +++  C  D      +  G+ K   L + 
Sbjct: 978  GYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD-----GITIGIMKR-ILSVR 1031

Query: 121  LELFHSLPRGV 131
             + FH+L  G+
Sbjct: 1032 EQQFHALEEGL 1042


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 111/206 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GY K   +EGA  L+ EM  +GI PD V    L  GL +   VE A+++F EM   
Sbjct: 532 VLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAI 591

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   I GLC  G + E+++L + +R      D   ++ +IDG C+ G+++ A
Sbjct: 592 GFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFA 651

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E F  + R  L+ D+ T++I+I G      M  A ++   M    + P++ T+ T +HG
Sbjct: 652 IETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHG 711

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
           + R+ + ++ + +L ++    ++PD 
Sbjct: 712 YCRMRKMNQAVIILDQLISAGIVPDT 737



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C+   ++ A  L   ML KG   + V +  L  G F+++ +E A  L+ EM+  G
Sbjct: 498 LLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERG 557

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   +T  IDGL K G + E+ E+F  +  +    +  AY+ LI GLC  GR+  AL
Sbjct: 558 IYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEAL 617

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  L++D  T++I+I G    GQM  A + FLDM+   + P++ TF  LI G+
Sbjct: 618 KLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGY 677

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +     E+++KM    + PD
Sbjct: 678 CKAFDMVGAGEIVNKMYSCGLDPD 701



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY K +E+  A  LY EM + G+ PD V  N L  G ++  ++E + +L  ++   G
Sbjct: 358 LMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSG 417

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D+  Y + +  LC  G + E+++L + L      L + A++ LI    ++G  + A 
Sbjct: 418 LFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAF 477

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E +  + R        T + ++ GL   G + +A  L   M E     N + +  L+ G+
Sbjct: 478 EAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGY 537

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++N       L  +MKE+ + PDA   + ++D L+K
Sbjct: 538 FKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSK 574



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 113/216 (52%), Gaps = 4/216 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVE-RAFKLFDEMQR 59
           ++++  C    ++ A+ L  E+L KG+   VV  N+L IG +    +E +AF+ +  M R
Sbjct: 427 VMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSL-IGAYSRAGLEDKAFEAYRIMVR 485

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVES-VELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
            G    + T    + GLC+ G++ E+ + L+R L      ++  AY+ L+DG  K   LE
Sbjct: 486 CGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEK-GFPINKVAYTVLLDGYFKMNNLE 544

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  L+  +    +  D V ++ +I GL   G +++A+++FL+M      PN   + +LI
Sbjct: 545 GAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLI 604

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            G       ++ ++L  +M++K ++ D    +I++D
Sbjct: 605 RGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIID 640



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 96/179 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K   +E A  ++ EM + G  P+   +N+L  GL +  +V  A KL  EM++ G
Sbjct: 568 LIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKG 627

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + +DT T+ I IDG C+ G +  ++E F  ++ +    DI  ++ LI G CK+  +  A 
Sbjct: 628 LLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAG 687

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           E+ + +    L  D+ TY+  +HG     +M++A  +   +    + P+ +T+ T++ G
Sbjct: 688 EIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSG 746



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 1/198 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C    +  AL L  EM  KG+  D    N +  G     Q++ A + F +MQR G
Sbjct: 603 LIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIG 662

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+ I I G CK   +V + E+   +     + DI  Y+  + G C+  ++  A+
Sbjct: 663 LLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAV 722

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   L    +V D VTY+ M+ G+ +D  +D+A  L   + +    PNVIT   L+  F
Sbjct: 723 IILDQLISAGIVPDTVTYNTMLSGICSD-ILDRAMILTAKLLKMGFIPNVITTNMLLSHF 781

Query: 182 IRINEPSKVIELLHKMKE 199
            +   P K +    K++E
Sbjct: 782 CKQGMPEKALIWGQKLRE 799



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +   M   G++P +     L   L  I      +KLF +M   G      T+   I 
Sbjct: 196 ALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMIC 255

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+   +V    L   +    C  D+  ++ LI+  C  GR  +A++  H + R  +  
Sbjct: 256 GFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEP 315

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V T++ ++H L  +G + +A  LF  +++  +APN   + TL+ G+ +  E ++   L 
Sbjct: 316 SVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLY 375

Query: 195 HKMKEKNVMPDASIVSIVV 213
            +M+   V PD    +I+V
Sbjct: 376 EEMRTTGVSPDCVTFNILV 394



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C       A++    M+  G++P V    T+   L     V  A KLFD +Q  
Sbjct: 287 ILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDM 346

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +   Y   +DG  K   + ++  L+  +R      D   ++ L+ G  K GR+E +
Sbjct: 347 GIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDS 406

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   L    L  D   Y +M+  L   G++D+A  L  ++ E  +  +V+ F +LI  
Sbjct: 407 DRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGA 466

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEI 221
           + R     K  E    M      P +S   S+++ L  K  +
Sbjct: 467 YSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWL 508



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 87/200 (43%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L+ +M+ KG +P  +  N +  G    H+V     L   M +   + D  T+ I I+  C
Sbjct: 234 LFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACC 293

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
             G    +++    +     E  +  ++ ++  LC+ G +  A +LF  +    +  +  
Sbjct: 294 IGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAA 353

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y+ ++ G +   ++ +A  L+ +M    V+P+ +TF  L+ G  +         LL  +
Sbjct: 354 IYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDL 413

Query: 198 KEKNVMPDASIVSIVVDLLA 217
               +  D+S+  ++V  L 
Sbjct: 414 IVSGLFLDSSLYDVMVSSLC 433



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI GYCK  ++ GA  + ++M S G+ PD+  +NT   G   + ++ +A  + D++   
Sbjct: 672 ILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISA 731

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
           G+  DT TY   + G+C +   +    +  T ++LK     ++   + L+   CK G  E
Sbjct: 732 GIVPDTVTYNTMLSGICSD---ILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPE 788

Query: 119 IALELFHSLPRGVLVADVVTYSIM 142
            AL     L       D ++Y I+
Sbjct: 789 KALIWGQKLREISFGFDEISYRIL 812


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++E   +L  +M+  G+KP+ + +N L  GL    ++     L DEM    
Sbjct: 237 MIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 296

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEI 119
           +  D  TY+I  DGL +NG     + LF   + LK  + I  Y+C  L++GLCK G++ I
Sbjct: 297 MVPDGFTYSILFDGLSRNGDSKAMLSLFG--KSLKNGVTIGDYTCSILLNGLCKDGKVSI 354

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E+  SL    LV   V Y+ +I+G    G+++ A   F  M+   + P+ IT+  LI+
Sbjct: 355 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALIN 414

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +    +   +LL +M++  V P     + ++D   +
Sbjct: 415 GLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGR 453



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 108/205 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+  E+EGA + + +M S+ IKPD + +N L  GL +  ++  A  L  EMQ +G
Sbjct: 377 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     T+   ID   + G + +   +   ++    + ++ +Y  +++  CK+G++  A+
Sbjct: 437 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 496

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    ++ +   Y+ +I      G  D+A  L   M+ N ++P+++T+  LI G 
Sbjct: 497 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 556

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
              ++ S+  E+++ +    ++PDA
Sbjct: 557 CNQSQISEAEEIINSLSNHRLIPDA 581



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G  +      A+ ++ EM  + + P+ + +NT+  G  +   +E  F L D+M   
Sbjct: 201 VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCH 260

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + + GLC+ G + E+  L   +   K   D   YS L DGL ++G  +  
Sbjct: 261 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 320

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF  SL  GV + D  T SI+++GL  DG++  A ++   +    + P  + + TLI+
Sbjct: 321 LSLFGKSLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 379

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G+ +  E         +MK +++ PD    + +++ L K E
Sbjct: 380 GYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 420



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK+ ++  A  +   +++ G+ P  VI+NTL  G  +  ++E AF  F +M+  
Sbjct: 341 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I+GLCK   I  + +L   ++       ++ ++ LID   ++G+LE  
Sbjct: 401 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKC 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  +VV+Y  +++    +G++ +A  +  DM    V PN   +  +I  
Sbjct: 461 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 520

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS---IVVDLLAKNEIS 222
           ++      +   L+ KMK   + P  SIV+   ++  L  +++IS
Sbjct: 521 YVEHGPNDQAFILVEKMKSNGISP--SIVTYNLLIKGLCNQSQIS 563



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 35/249 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C+   +     L  EM S+ + PD   ++ LF GL      +    LF +  ++
Sbjct: 271 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKN 330

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--------RILKCEL------------- 99
           GV     T +I ++GLCK+G +  + E+ ++L        R++   L             
Sbjct: 331 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 390

Query: 100 --------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                         D   Y+ LI+GLCK+ R+  A +L   +    +   V T++ +I  
Sbjct: 391 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 450

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               GQ++K   +  +M+EN + PNV+++G++++ F +  +  + + +L  M  K+V+P+
Sbjct: 451 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 510

Query: 206 ASIVSIVVD 214
           A + + ++D
Sbjct: 511 AQVYNAIID 519



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 8/243 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y +  ++E    + SEM   G+KP+VV + ++     +  ++  A  + D+M    
Sbjct: 447 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + + Y   ID   ++G   ++  L   ++       I  Y+ LI GLC   ++  A 
Sbjct: 507 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ +SL    L+ D V+Y+ +I      G +DKA DL   M +  +   V T+  LI G 
Sbjct: 567 EIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG- 625

Query: 182 IRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDLLAK--NEISLNSLPSFTVHERQE 236
             +    ++IE   L  KM + NV+P  +I +I+V+  +K  NEI    L    + +R  
Sbjct: 626 --LGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 683

Query: 237 EVD 239
             D
Sbjct: 684 HDD 686



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYS 105
           V RAF +   +   G   DT  +   +      G + E+V + R + R      +  +Y+
Sbjct: 144 VRRAFGI---LASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYN 200

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            +I G+ ++GR   A+E+F  +    ++ + +TY+ MI G    G ++    L   M  +
Sbjct: 201 VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCH 260

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + PN IT+  L+ G  R     +   LL +M  + ++PD    SI+ D L++N
Sbjct: 261 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 314



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C   +I  A  + + + +  + PD V +NTL         +++A  L   M + 
Sbjct: 551 LLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 610

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+ +  RTY   I GL   G ++E   L++ +
Sbjct: 611 GIKSTVRTYHQLISGLGGAGRLIEMEYLYQKM 642


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK      AL ++ EML +GI PDV I+  L   L    ++E A +L   M+ +
Sbjct: 219 VLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKEN 278

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT+F+ GLCK G + E+   F  L+     L +  YSCLIDGL ++GR +  
Sbjct: 279 GCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEG 338

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  +  +    +  D+  Y+I+I      G+   A  L  +M++    P+   + TL+  
Sbjct: 339 LSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKA 398

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +    +   L+ +M + NV+ D++  +I++  L K
Sbjct: 399 LFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCK 436



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 13/231 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  + +    + A  L  EM  KG  PD   +NTL   LF++  ++RA  L  EM ++
Sbjct: 359 ILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQN 418

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D+ T+ I I GLCK G I +++++F  +    C   +  Y+ LIDGL ++G LE A
Sbjct: 419 NVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEA 478

Query: 121 LELFHSLPRG-------------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LFH +  G               V D  +   ++ G+   GQ+ KA+ L   + E+ V
Sbjct: 479 RMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGV 538

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            P+V+T+ TLI+G  +       + L  +++ K + PD      ++D L +
Sbjct: 539 VPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWR 589



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 95/191 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL LY+ M+S G  P+   +  L  GL +      A K+FDEM   G+  D + YT+ + 
Sbjct: 198 ALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLS 257

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            LC  G I ++  L  +++   C  D   Y+  + GLCK+GR++ A   F  L  G    
Sbjct: 258 SLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTL 317

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            ++ YS +I GL+  G+ D+    + +M   +++P++  +  LI  F           LL
Sbjct: 318 GLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLL 377

Query: 195 HKMKEKNVMPD 205
            +MK+K  +PD
Sbjct: 378 DEMKDKGFVPD 388



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 101/204 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+  +S M     +P   ++N +F  L +   +  A  L++ M   G   ++ TY + +D
Sbjct: 163 AVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMD 222

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLCK G  V+++++F  +       D++ Y+ L+  LC  GR+E A  L  S+       
Sbjct: 223 GLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPP 282

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY++ + GL   G++D+A   F  +++      +I +  LI G  +     + +   
Sbjct: 283 DEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYY 342

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            +M  K++ PD ++ +I++   A+
Sbjct: 343 TEMLGKSISPDITLYTILIRRFAE 366



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C++ ++  A  L   ++  G+ PDVV +NTL  GL +   ++ A +LF E+Q  G
Sbjct: 513 LVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKG 572

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   IDGL +     ++  LF+ +        +  Y+ ++  LC+  +L  A+
Sbjct: 573 ISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAI 632

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE--NAVAPNVITFGTLI 178
            L+   LP+   ++            + DG +D+     + +++   ++ PN  T   + 
Sbjct: 633 NLWLDYLPKKYNLSPEDEVIANARKCFEDGFLDETVKELIKIDQVYGSLNPNPYTIWVI- 691

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G  ++ +    + + H ++E  ++   +  +++++ L  + 
Sbjct: 692 -GLCQVRKIDDALRIFHILEEFGIVVTPACCALLINYLCWDR 732



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 36/195 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK K ++GAL L+ E+  KGI PD + + TL  GL+  H+   A  LF  + R G
Sbjct: 548 LINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSG 607

Query: 62  VAADTRTYTIFIDGLCK------------------------------------NGYIVES 85
                  Y   +  LC+                                    +G++ E+
Sbjct: 608 GFPSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPEDEVIANARKCFEDGFLDET 667

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           V+    +  +   L+   Y+  + GLC+  +++ AL +FH L    +V      +++I+ 
Sbjct: 668 VKELIKIDQVYGSLNPNPYTIWVIGLCQVRKIDDALRIFHILEEFGIVVTPACCALLINY 727

Query: 146 LYNDGQMDKAHDLFL 160
           L  D  ++ A D+ +
Sbjct: 728 LCWDRNLNAAVDIMM 742



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 3/172 (1%)

Query: 50  AFKLFDEM---QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           A  +FD +   +  G+ A +  +   +      G   E+VE F  +    C      Y+ 
Sbjct: 125 AVAMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNA 184

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +   L   G + +AL L++ +     + +  TY +++ GL   G    A  +F +M E  
Sbjct: 185 VFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERG 244

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + P+V  +  L+              LL  MKE    PD    ++ +  L K
Sbjct: 245 IVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCK 296


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK+ EI+ AL +   M    + PDVV +NT+   L +  ++++A ++ D   + 
Sbjct: 132 VLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 188

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYTI I+  CK   + ++++L   +R    + D+  Y+ LI+G+CK GRL+ A
Sbjct: 189 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 248

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  +++P      +V+T++I++  + + G+   A  L  DM     +P+V+TF  LI+ 
Sbjct: 249 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 308

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R     + I++L KM      P++
Sbjct: 309 LCRQGLLGRAIDILEKMPMHGCTPNS 334



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M   G  P+ + +N L  G  +  +++RA +  D M   
Sbjct: 304 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G +  +VE+   L    C   +  Y+ +IDGL K G+ E A
Sbjct: 364 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERA 423

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   + R  L  D++TYS ++ GL  +G++D+A   F D+E   + PN IT+ +++ G
Sbjct: 424 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 483

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  +  + I+ L  M  K   P  +  +I+++ +A
Sbjct: 484 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIA 520



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A+   + M S G +P+V+ HN +   +    +   A KL  +M R 
Sbjct: 234 VLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK 293

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+ G +  ++++   + +  C  +  +Y+ L+ G CK  +++ A
Sbjct: 294 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 353

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ ++  L  DG++D A ++   +     +P +IT+ T+I G
Sbjct: 354 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 413

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +  + I+LL +M+ K + PD    S +V  L++
Sbjct: 414 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 451



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 111/214 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK K+++ A+     M+S+G  PD+V +NTL   L +  +V+ A ++ +++   G
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 399

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G    +++L   +R    + DI  YS L+ GL + G+++ A+
Sbjct: 400 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI 459

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH L    +  + +TY+ ++ GL    Q D+A D    M      P   T+  LI G 
Sbjct: 460 KFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 519

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
                  + ++LL+++  + ++  +S   + V +
Sbjct: 520 AYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 553



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+  + + A  +   +   G  PDV+ +N L  G  +  +++ A ++ D M    
Sbjct: 98  LIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN--- 154

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TY   +  LC +G + +++E+       +C  D+  Y+ LI+  CK   +  A+
Sbjct: 155 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 214

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       DVVTY+++I+G+  +G++D+A     +M      PNVIT   ++   
Sbjct: 215 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 274

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                     +LL  M  K   P     +I+++ L + 
Sbjct: 275 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 312



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 3/198 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N E+E        M+ +G  PD++   +L  G   I + ++A  + + +++ G   D  
Sbjct: 69  RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 128

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G CK+G I  ++++   + +     D+  Y+ ++  LC SG+L+ A+E+    
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDRMNVAP---DVVTYNTILRTLCDSGKLKQAMEVLDRQ 185

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+I+I     +  + +A  L  +M      P+V+T+  LI+G  +    
Sbjct: 186 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 245

Query: 188 SKVIELLHKMKEKNVMPD 205
            + I+ L+ M      P+
Sbjct: 246 DEAIKFLNNMPSYGCQPN 263



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L ++G LE   +   S+     + D++  + +I G    G+  KA  +   +E++   P+
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           VIT+  LI G+ +  E    +++L +M   NV PD    + ++  L 
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLC 170


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 120/218 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  +CK  E+  A +++  +   G++P VV  NTL  G  ++  ++  F+L   M   
Sbjct: 141 ILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+I I+GLCK G + E+ ELF  +       +   ++ LI G CK+ ++++A
Sbjct: 201 GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G++ + HDL  +M  N + P+ I++ TLI G
Sbjct: 261 MEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +    +EL +KM ++++  D    + ++  L +
Sbjct: 321 SCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCR 358



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 109/204 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK  +++ A  L++EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 ILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TY   I GLCK G + +  +L   + +   + D  +Y+ LIDG CK G LEIA
Sbjct: 271 GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL + + +  +  D V Y+ +I  L  +G+   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 LELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKRDSKTASKLLREMQRDGPVP 414



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN++++ A+ +Y +MLS+G+ PD++ +NTL  GL +  ++++   L DEM  +G
Sbjct: 247 LIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +YT  IDG CK G +  ++EL   +      LD  AY+ LI  LC+ GR   A 
Sbjct: 307 LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+          A  L  +M+ +   P V+T
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 111/221 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY K  +++    L S M + G +PDV  ++ L  GL +  +++ A +LF+EM  +G
Sbjct: 177 LINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  I G CKN  +  ++E+++ +       D+  Y+ LI GLCK G L+   
Sbjct: 237 LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVH 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D ++Y+ +I G   +G ++ A +L   M + ++  + + +  LI   
Sbjct: 297 DLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            R        ++L +M    + PD    +++++   K   S
Sbjct: 357 CREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDS 397



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 102/199 (51%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
            + Y E+L  G    +   N L     +  ++  A  +FD + + G+     ++   I+G
Sbjct: 121 WDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLING 180

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
             K G + E   L   +     + D+  YS LI+GLCK G+L+ A ELF+ +    LV +
Sbjct: 181 YIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPN 240

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
            VT++ +IHG   + ++D A +++  M    ++P++IT+ TLI+G  +  E  +V +L+ 
Sbjct: 241 GVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLID 300

Query: 196 KMKEKNVMPDASIVSIVVD 214
           +M    + PD    + ++D
Sbjct: 301 EMIMNGLKPDKISYTTLID 319



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L E    +  +  + E+   G  A    + I +   CK G +  +  +F  +        
Sbjct: 111 LMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ LI+G  K G L+    L  ++       DV TYSI+I+GL  +G++D+A++LF 
Sbjct: 171 VVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFN 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKN 219
           +M +N + PN +TF TLIHG  +  +    +E+  +M  + + PD  +  +++  L  K 
Sbjct: 231 EMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKG 290

Query: 220 EI 221
           E+
Sbjct: 291 EL 292



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/141 (19%), Positives = 69/141 (48%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           ++G++ ++V+ FR  +  K  +       +++ L +    ++  + +  +      A + 
Sbjct: 78  ESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLY 137

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            ++I++     +G+M  A  +F  + +  + P+V++F TLI+G+I++ +  +   L   M
Sbjct: 138 FFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAM 197

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
                 PD    SI+++ L K
Sbjct: 198 HASGAQPDVYTYSILINGLCK 218


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 1/203 (0%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I+G+ K K ++ AL ++ ++ ++G  PDVV +NTL  G  ++ +V  A  + DEM   G+
Sbjct: 604 IDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 663

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
                TY + IDG CKNG I ++      +   + E ++  Y+ LIDGLC +GR + A+ 
Sbjct: 664 VPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIH 723

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L++ +       + +++  +IHGL   G  D A   F +M E    P+ I +  LI  FI
Sbjct: 724 LWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERET-PDTIVYVALITSFI 782

Query: 183 RINEPSKVIELLHKMKEKNVMPD 205
               P+   E+L +M  K   PD
Sbjct: 783 SNKNPTLAFEILKEMVAKGKFPD 805



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 8/227 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CK K    A N  +EM+ +G  PD+V ++    G  +I  V++A ++F ++   
Sbjct: 567 LLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICAR 626

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   I+G CK   + E+ ++   +        +  Y+ LIDG CK+G ++ A
Sbjct: 627 GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQA 686

Query: 121 LELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              FH L R V      +V+TY+ +I GL N G+ D A  L+ +M     +PN I+F  L
Sbjct: 687 ---FHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIAL 743

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASI-VSIVVDLLAKNEISL 223
           IHG  +   P   +    +M E+   PD  + V+++   ++    +L
Sbjct: 744 IHGLCKCGWPDAALLYFREMGERET-PDTIVYVALITSFISNKNPTL 789



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 121/241 (50%), Gaps = 3/241 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G C   +++ AL+L+ +M+  G K +V+++N L   L   +++E  + L  EM+  
Sbjct: 462 IVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGS 521

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+      LC+   +  ++++ R +R+   E  I+ Y+ L+  LCK  R   A
Sbjct: 522 GFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEA 581

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 + R   + D+V YS  I G      +D+A ++F D+      P+V+ + TLI+G
Sbjct: 582 CNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLING 641

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEE 237
           F ++   S+  ++L +M  K ++P     ++++D   KN   + + + L      ER+  
Sbjct: 642 FCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPN 701

Query: 238 V 238
           V
Sbjct: 702 V 702



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 116/271 (42%), Gaps = 49/271 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+ +   ++ AL L+ +M   G  PDV +++ L  GL    ++E+A  L  EM+  
Sbjct: 308 VLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKEL 367

Query: 61  GVAADTRT---------------------------------YTIFIDGLCKNGYIVESVE 87
           G+  D +                                  Y   ++GL     + ++  
Sbjct: 368 GIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYY 427

Query: 88  LFRTLR--------------ILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
           L R +               ++K     D  ++S +IDGLC +G+L++AL LF  + R  
Sbjct: 428 LLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG 487

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              +V+ Y+ +I  L N  ++++ + L  +M+ +   P   T  ++     R  + +  +
Sbjct: 488 CKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGAL 547

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
           +++ +M+     P     +++V  L K + S
Sbjct: 548 DMVREMRVHGHEPWIKHYTLLVKQLCKRKRS 578



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 49/269 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  + K  E++ A  L   M   GI+ +      L  G     +V++A +LF +MQ+ 
Sbjct: 273 ILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKS 332

Query: 61  GVAADTRTYTIFIDGLCKN-----------------------------GYIVESVELFRT 91
           G A D   Y   I GLC                                Y  E V+++R 
Sbjct: 333 GFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRL 392

Query: 92  LRILKCELDIQA----YSCLIDGLCKSGRLEIALELFHSLP----------------RGV 131
           +     +LD +A    Y+ +++GL     ++ A  L  ++                 + +
Sbjct: 393 IEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEM 452

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  D  ++SI+I GL N G++D A  LF DM       NV+ +  LI      N   +  
Sbjct: 453 VRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 512

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LL +MK     P     + +   L + E
Sbjct: 513 LLLKEMKGSGFRPTQFTHNSIFGCLCRRE 541



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   G   D  T T  +   C +    +++ +F  +   +  +D    S L+    K G
Sbjct: 224 EMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEI-YGRGWVDGHVLSILVLTFSKCG 282

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            ++ A EL   +    +  +  T+ ++IHG     ++DKA  LF  M+++  AP+V  + 
Sbjct: 283 EVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYD 342

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            LI G     E  K + LL +MKE  + PD  I+S ++   ++ E+ +  L    + ER 
Sbjct: 343 ALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSE-EVDIYRL----IEERL 397

Query: 236 EEVD 239
           E++D
Sbjct: 398 EDLD 401



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 40/189 (21%)

Query: 71  IFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEI---------- 119
            FI  L   G + E+  LF  +++++ C  +  +++CL++ + KSG +++          
Sbjct: 168 FFIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCD 227

Query: 120 -------------------------ALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMD 153
                                    AL +F+ +  RG +   V+  SI++      G++D
Sbjct: 228 SGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVL--SILVLTFSKCGEVD 285

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV-SIV 212
           KA +L   ME+  +  N  TF  LIHGF+R +   K ++L  KM++    PD S+  +++
Sbjct: 286 KAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALI 345

Query: 213 VDLLAKNEI 221
             L AK EI
Sbjct: 346 GGLCAKKEI 354


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYCK+ EI+ AL +   M    + PDVV +NT+   L +  ++++A ++ D   + 
Sbjct: 189 VLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 245

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYTI I+  CK   + ++++L   +R    + D+  Y+ LI+G+CK GRL+ A
Sbjct: 246 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 305

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  +++P      +V+T++I++  + + G+   A  L  DM     +P+V+TF  LI+ 
Sbjct: 306 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 365

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R     + I++L KM      P++
Sbjct: 366 LCRQGLLGRAIDILEKMPMHGCTPNS 391



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M   G  P+ + +N L  G  +  +++RA +  D M   
Sbjct: 361 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 420

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G +  +VE+   L    C   +  Y+ +IDGL K G+ E A
Sbjct: 421 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERA 480

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   + R  L  D++TYS ++ GL  +G++D+A   F D+E   + PN IT+ +++ G
Sbjct: 481 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 540

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  +  + I+ L  M  K   P  +  +I+++ +A
Sbjct: 541 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIA 577



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A+   + M S G +P+V+ HN +   +    +   A KL  +M R 
Sbjct: 291 VLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK 350

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+ G +  ++++   + +  C  +  +Y+ L+ G CK  +++ A
Sbjct: 351 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 410

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ ++  L  DG++D A ++   +     +P +IT+ T+I G
Sbjct: 411 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 470

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +  + I+LL +M+ K + PD    S +V  L++
Sbjct: 471 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 508



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 111/214 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK K+++ A+     M+S+G  PD+V +NTL   L +  +V+ A ++ +++   G
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 456

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G    +++L   +R    + DI  YS L+ GL + G+++ A+
Sbjct: 457 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI 516

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH L    +  + +TY+ ++ GL    Q D+A D    M      P   T+  LI G 
Sbjct: 517 KFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 576

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
                  + ++LL+++  + ++  +S   + V +
Sbjct: 577 AYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 610



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+  + + A  +   +   G  PDV+ +N L  G  +  +++ A ++ D M    
Sbjct: 155 LIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN--- 211

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TY   +  LC +G + +++E+       +C  D+  Y+ LI+  CK   +  A+
Sbjct: 212 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 271

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       DVVTY+++I+G+  +G++D+A     +M      PNVIT   ++   
Sbjct: 272 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 331

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     +LL  M  K   P     +I+++ L +
Sbjct: 332 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 368



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 3/198 (1%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N E+E        M+ +G  PD++   +L  G   I + ++A  + + +++ G   D  
Sbjct: 126 RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 185

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G CK+G I  ++++   + +     D+  Y+ ++  LC SG+L+ A+E+    
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDRMNVAP---DVVTYNTILRTLCDSGKLKQAMEVLDRQ 242

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +     DV+TY+I+I     +  + +A  L  +M      P+V+T+  LI+G  +    
Sbjct: 243 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 302

Query: 188 SKVIELLHKMKEKNVMPD 205
            + I+ L+ M      P+
Sbjct: 303 DEAIKFLNNMPSYGCQPN 320



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L ++G LE   +   S+     + D++  + +I G    G+  KA  +   +E++   P+
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           VIT+  LI G+ +  E    +++L +M   NV PD    + ++  L 
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLC 227


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++E    L  +M+  G+KP+ + +N L  GL    ++     L DEM    
Sbjct: 241 MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 300

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEI 119
           +  D  TY+I  DGL +NG     + LF   + LK  + I  Y+C  L++GLCK G++ I
Sbjct: 301 MVPDGFTYSILFDGLSRNGDSKAMLSLFG--KYLKNGVTIGDYTCSILLNGLCKDGKVSI 358

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E+  SL    LV   V Y+ +I+G    G+++ A   F  M+   + P+ IT+  LI+
Sbjct: 359 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALIN 418

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +    +   +LL +M++  V P     + ++D   +
Sbjct: 419 GLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGR 457



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 108/205 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+  E+EGA + + +M S+ IKPD + +N L  GL +  ++  A  L  EMQ +G
Sbjct: 381 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 440

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     T+   ID   + G + +   +   ++    + ++ +Y  +++  CK+G++  A+
Sbjct: 441 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 500

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    ++ +   Y+ +I      G  D+A  L   M+ N ++P+++T+  LI G 
Sbjct: 501 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 560

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
              ++ S+  E+++ +    ++PDA
Sbjct: 561 CNQSQISEAEEIINSLSNHRLIPDA 585



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 2/226 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G  +      A+ ++ EM  + + P+ + +NT+  G  +   +E  F+L D+M   
Sbjct: 205 VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 264

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + + GLC+ G + E+  L   +   K   D   YS L DGL ++G  +  
Sbjct: 265 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 324

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF   L  GV + D  T SI+++GL  DG++  A ++   +    + P  + + TLI+
Sbjct: 325 LSLFGKYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 383

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           G+ +  E         +MK +++ PD    + +++ L K E   N+
Sbjct: 384 GYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNA 429



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK+ ++  A  +   +++ G+ P  VI+NTL  G  +  ++E AF  F +M+  
Sbjct: 345 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR 404

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I+GLCK   I  + +L   ++       ++ ++ LID   ++G+LE  
Sbjct: 405 HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKC 464

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  +VV+Y  +++    +G++ +A  +  DM    V PN   +  +I  
Sbjct: 465 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 524

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS---IVVDLLAKNEIS 222
           ++      +   L+ KMK   + P  SIV+   ++  L  +++IS
Sbjct: 525 YVEHGPNDQAFILVEKMKSNGISP--SIVTYNLLIKGLCNQSQIS 567



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 35/249 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C+   +     L  EM S+ + PD   ++ LF GL      +    LF +  ++
Sbjct: 275 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 334

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL--------RILKCEL------------- 99
           GV     T +I ++GLCK+G +  + E+ ++L        R++   L             
Sbjct: 335 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 394

Query: 100 --------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                         D   Y+ LI+GLCK+ R+  A +L   +    +   V T++ +I  
Sbjct: 395 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 454

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               GQ++K   +  +M+EN + PNV+++G++++ F +  +  + + +L  M  K+V+P+
Sbjct: 455 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514

Query: 206 ASIVSIVVD 214
           A + + ++D
Sbjct: 515 AQVYNAIID 523



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 2/240 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y +  ++E    + SEM   G+KP+VV + ++     +  ++  A  + D+M    
Sbjct: 451 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 510

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + + Y   ID   ++G   ++  L   ++       I  Y+ LI GLC   ++  A 
Sbjct: 511 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 570

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ +SL    L+ D V+Y+ +I      G +DKA DL   M +  +   V T+  LI G 
Sbjct: 571 EIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 630

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK--NEISLNSLPSFTVHERQEEVD 239
                 +++  L  KM + NV+P  +I +I+V+  +K  NEI    L    + +R    D
Sbjct: 631 GGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 690



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYS 105
           V RAF +   +   G   DT  +   +      G + E+V + R + R      +  +Y+
Sbjct: 148 VRRAFGI---LASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYN 204

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            +I G+ ++GR   A+E+F  +    ++ + +TY+ MI G    G ++    L   M  +
Sbjct: 205 VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 264

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + PN IT+  L+ G  R     +   LL +M  + ++PD    SI+ D L++N
Sbjct: 265 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 318



 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C   +I  A  + + + +  + PD V +NTL         +++A  L   M + 
Sbjct: 555 LLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 614

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+ +  RTY   I GL   G + E   L++ +
Sbjct: 615 GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKM 646


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+ K  EI  A +++  +   G++P VV  NTL  G  ++  +   F+L + MQ  
Sbjct: 141 ILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++  LF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+     P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYKP 414



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  ++     L + M + G++PDV  ++ L  GL +  +++ A  LFDEM   G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 80/165 (48%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I + G  K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L     L +++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 61/116 (52%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+ G  K G + +A  +F ++ +  L   VV+++ +++G    G +++   L   M+
Sbjct: 139 FNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++      L  +M +K ++P+    + ++D   KN
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKN 254


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 105/198 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +C++     A  L  +M+ + I PDVV  + L   L +  +V  A +++ +M R G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T TY   IDG CK   + ++  +  ++    C  D+  +S LI+G CK+ R++  +
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM 236

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R  +VA+ VTY+ +IHG    G +D A DL   M  + VAPN ITF +++   
Sbjct: 237 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296

Query: 182 IRINEPSKVIELLHKMKE 199
               E  K   +L  +++
Sbjct: 297 CSKKELRKAFAILEDLQK 314



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 5/234 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C    +  AL L   M+ +G +P    + T+  GL ++   E A  L  +M+   
Sbjct: 16  LMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETH 71

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A    Y   ID LCK+G+ + +  LF  +       D+  YS +ID  C+SGR   A 
Sbjct: 72  IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAE 131

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  DVVT+S +I+ L  +G++ +A +++ DM    + P  IT+ ++I GF
Sbjct: 132 QLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGF 191

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
            + +  +    +L  M  K+  PD    S +++   K +   N +  F  +H R
Sbjct: 192 CKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR 245



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 114/256 (44%), Gaps = 36/256 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  + E ALNL S+M    IK  VVI+N +   L +      A  LF EM   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI------------- 108
           +  D  TY+  ID  C++G   ++ +L R +   +   D+  +S LI             
Sbjct: 107 IFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAE 166

Query: 109 ----------------------DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                 DG CK  RL  A  +  S+       DVVT+S +I+G 
Sbjct: 167 EIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGY 226

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD- 205
               ++D   ++F +M    +  N +T+ TLIHGF ++ +     +LL+ M    V P+ 
Sbjct: 227 CKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNY 286

Query: 206 ASIVSIVVDLLAKNEI 221
            +  S++  L +K E+
Sbjct: 287 ITFQSMLASLCSKKEL 302



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 81/164 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN   K  ++  A  +Y +ML +GI P  + +N++  G  +  ++  A ++ D M    
Sbjct: 152 LINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKS 211

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  T++  I+G CK   +   +E+F  +       +   Y+ LI G C+ G L+ A 
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           +L + +    +  + +T+  M+  L +  ++ KA  +  D++++
Sbjct: 272 DLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKS 315


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 3/226 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN  CK   ++ A    + M S G  PD + + T+  GL    +   A +L  EM R+
Sbjct: 322 IVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRN 381

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+  FI  LC+ G I +++ L   ++   C + +  Y+ L++G C  G ++ A
Sbjct: 382 NCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSA 441

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF S+P      + +TY+ ++ GL N  ++D A +L  +M      PNV+TF  L++ 
Sbjct: 442 LELFRSMP---CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNF 498

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           F +     + IEL+ +M E    P+    + + D + K+  S ++L
Sbjct: 499 FCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDAL 544



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C+ +    A  L  EM+     P+ V  NT    L +   +E+A  L ++MQ  G
Sbjct: 358 VLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHG 417

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   ++G C  G+I  ++ELFR++    C+ +   Y+ L+ GLC + RL+ A 
Sbjct: 418 CTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAA 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       +VVT++++++     G +D+A +L   M E+   PN+IT+ TL  G 
Sbjct: 475 ELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGI 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +       +ELLH +  K V PD    S ++ +L+K +
Sbjct: 535 TKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKED 573



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+   ++ A  L   M    + PD   +  L   L +  +V  A  L D+M R G
Sbjct: 116 LVAGYCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG 172

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT+ ++ +CKN    +++ +   +R   C  +I  Y+ +I+G+C+ GR++ A 
Sbjct: 173 CQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 232

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + L       D V+Y+ ++ GL    + D   +LF +M E    PN +TF  LI  F
Sbjct: 233 DLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFF 292

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     + I++L +M E     + ++ +IV++ + K
Sbjct: 293 CRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICK 329



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 6/235 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+      A  +       G   DV  +NTL  G      ++ A +L   M    
Sbjct: 81  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP--- 137

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TYT  I  LC  G + +++ L   +    C+ ++  Y+ L++ +CK+   E A+
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       ++VTY+++I+G+  +G++D A DL   +      P+ +++ TL+ G 
Sbjct: 198 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGL 257

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHE 233
                   V EL  +M EKN MP+     +++    +    E ++  L   T HE
Sbjct: 258 CASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE 312



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C    I+ AL L+  M     KP+ + + TL  GL    +++ A +L  EM    
Sbjct: 428 LVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRD 484

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+ + ++  C+ G++ E++EL   +    C  ++  Y+ L DG+ K    E AL
Sbjct: 485 CPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDAL 544

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H L    +  DV+T+S +I  L  + ++++A  +F   ++  + P  + +  ++ G 
Sbjct: 545 ELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGL 604

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +E    I+ L  M     MP+ S   I+++ LA+
Sbjct: 605 CKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAR 641



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    +  AL+L  +ML +G +P+VV +  L   + +    E+A  + DEM+  G
Sbjct: 148 LIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKG 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + I+G+C+ G + ++ +L   L    C+ D  +Y+ L+ GLC S R +   
Sbjct: 208 CTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVE 267

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +     + + VT+ ++I      G +++A  +   M E+  A N      +I+  
Sbjct: 268 ELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSI 327

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +        + L+ M      PD    + V+  L + E
Sbjct: 328 CKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAE 366



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 100/218 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CKN   E A+ +  EM +KG  P++V +N +  G+    +V+ A  L + +   
Sbjct: 182 VLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSY 241

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT +YT  + GLC +    +  ELF  +    C  +   +  LI   C+ G +E A
Sbjct: 242 GCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERA 301

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   +       +    +I+I+ +   G++D A     +M      P+ I++ T++ G
Sbjct: 302 IQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKG 361

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R    +   ELL +M   N  P+    +  + +L +
Sbjct: 362 LCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQ 399



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 91/199 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C +K  +    L++EM+ K   P+ V  + L         VERA ++  +M    
Sbjct: 253 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +T    I I+ +CK G + ++ +    +    C  D  +Y+ ++ GLC++ R   A 
Sbjct: 313 CATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAK 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     + VT++  I  L   G +++A  L   M+E+     V+T+  L++GF
Sbjct: 373 ELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGF 432

Query: 182 IRINEPSKVIELLHKMKEK 200
                    +EL   M  K
Sbjct: 433 CVQGHIDSALELFRSMPCK 451



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
            RDG A D    T  I  LC+ G   ++  + R        +D+ AY+ L+ G C+ G L
Sbjct: 67  SRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHL 126

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  L  S+P   +  D  TY+ +I  L + G++  A  L  DM      PNV+T+  L
Sbjct: 127 DAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVL 183

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    + +   + + +L +M+ K   P+    +++++ + +
Sbjct: 184 LEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCR 224



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N +C+   ++ A+ L  +M+  G  P+++ +NTLF G+ +    E A +L   +   
Sbjct: 494 VLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSK 553

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  T++  I  L K   + E++++F   + +        Y+ ++ GLCK   ++ A
Sbjct: 554 GVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNA 613

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++    +     + +  TY I+I GL  +G + +A DL 
Sbjct: 614 IDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLL 652



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +G  K+   E AL L   ++SKG+ PDV+  +++   L +  +VE A ++F   Q  G
Sbjct: 530 LFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIG 589

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   + GLCK   I  +++    +    C  +   Y  LI+GL + G L+ A 
Sbjct: 590 MRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQ 649

Query: 122 ELFHSL-PRGVLVADVV 137
           +L   L  RGV+  +++
Sbjct: 650 DLLSMLCSRGVVSKNLI 666


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K ++ E A+ L+ +M+ KG +P++V+++ L  GL    +++ A ++  EM   G
Sbjct: 369 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 428

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  I G  K G   +++ +++ +    C  +   YS LI GLC+ G+L  A+
Sbjct: 429 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 488

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLI 178
            ++ H L RG L  DVV YS MIHGL N G ++    LF +M  +E+   P+V+T+  L+
Sbjct: 489 MMWTHMLGRG-LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILL 547

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
               + N  S  I+LL+ M ++   PD    +I ++ L
Sbjct: 548 RALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  ++     L   M  KG  P+ V +NT+  GL    ++++A  L D M   
Sbjct: 263 VLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS 322

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   I+GL K G  V+ V L  +L       +  AYS LI GL K  + E A
Sbjct: 323 KCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEA 382

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L+  +       ++V YS +I GL  +G++D+A ++  +M      PN  T+ +LI G
Sbjct: 383 MGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKG 442

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +     K I +  +M + N +P+    S+++  L ++
Sbjct: 443 FFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCED 481



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK   ++ A+ ++ EM  +  +PDV  + TL  GL +  +++ A  L DEMQ +
Sbjct: 193 LVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIE 252

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    + T+ + I+GLCK G +V   +L   + +  C  +   Y+ +I+GLC  G+L+ A
Sbjct: 253 GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 312

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +     V + VTY  +I+GL   G+      L   +EE     N   + TLI G
Sbjct: 313 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 372

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  + + L  KM EK   P+  + S ++D L +
Sbjct: 373 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR 410



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING  K       ++L S +  +G   +   ++TL  GLF+  + E A  L+ +M   G
Sbjct: 334 LINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG 393

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  IDGLC+ G + E+ E+   +    C  +   YS LI G  K+G  + A+
Sbjct: 394 CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAI 453

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  + +   V + + YS++IHGL  DG++ +A  ++  M    + P+V+ + ++IHG 
Sbjct: 454 RVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 513

Query: 182 IRINEPSKVIELLHKM--KEKNVMPDASIVSIVVDLLAK-NEIS 222
                    ++L ++M  +E +  PD    +I++  L K N IS
Sbjct: 514 CNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSIS 557



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 101/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   I+ A+ L  EM  +G  P  V  N L  GL +   + R  KL D M   G
Sbjct: 229 LMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG 288

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I+GLC  G + ++V L   +   KC  +   Y  LI+GL K GR    +
Sbjct: 289 CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGV 348

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  SL      A+   YS +I GL+ + + ++A  L+  M E    PN++ +  LI G 
Sbjct: 349 HLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGL 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R  +  +  E+L +M  K   P+A   S ++
Sbjct: 409 CREGKLDEAKEILCEMVNKGCTPNAFTYSSLI 440



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 100/196 (51%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I P+V+  N +   + ++  V+RA ++F EM       D  TY   +DGLCK   I E+V
Sbjct: 184 ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAV 243

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++I  C      ++ LI+GLCK G +    +L  ++     V + VTY+ +I+GL
Sbjct: 244 LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 303

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++DKA  L   M  +   PN +T+GTLI+G ++       + LL  ++E+    + 
Sbjct: 304 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 363

Query: 207 SIVSIVVDLLAKNEIS 222
              S ++  L K E S
Sbjct: 364 YAYSTLISGLFKEEKS 379



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 7/197 (3%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +V+I   LF    E ++     K         ++ +  ++ + I  +CK G +  ++E+F
Sbjct: 159 NVIIQEGLFHRALEFYECGVGGK-------TNISPNVLSFNLVIKAMCKLGLVDRAIEVF 211

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           R + I KCE D+  Y  L+DGLCK  R++ A+ L   +         VT++++I+GL   
Sbjct: 212 REMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKK 271

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G M +   L  +M      PN +T+ T+I+G     +  K + LL +M     +P+    
Sbjct: 272 GDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTY 331

Query: 210 SIVVDLLAKNEISLNSL 226
             +++ L K   S++ +
Sbjct: 332 GTLINGLVKQGRSVDGV 348



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           +LI+G C++ ++  A+ +++ ML +G++PDVV ++++  GL     VE   KLF+EM  Q
Sbjct: 473 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 532

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
                 D  TY I +  LCK   I  +++L  ++    C  D+   +  ++ L
Sbjct: 533 ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK      AL L+ EM+S+GI P+V  H  L   +    Q++ A  L   M+  
Sbjct: 216 VLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDK 275

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEI 119
           G   D  TY  F+ GLCK G + E++E    LR      L ++ YSCLIDGL  +GR E 
Sbjct: 276 GCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYEE 335

Query: 120 ALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             + +   L +  +  D+V Y+IMI G    G+ + A   F +M+E    P+   + TL+
Sbjct: 336 GFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLL 395

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                  +      L+ +M   NV+ D    + ++  L K ++
Sbjct: 396 KALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQL 438



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 2/193 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL LY+ M++ G  P+   +N L  GL +      A KLFDEM   G+  + +T+TI + 
Sbjct: 195 ALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLS 254

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR-GVLV 133
            +C  G + E+  L  ++    C  D   Y+  + GLCK+GR++ A+E   +L   G  V
Sbjct: 255 SMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFV 314

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIHGFIRINEPSKVIE 192
             +  YS +I GL+  G+ ++    ++++ E A V+P+++ +  +I G       +    
Sbjct: 315 LGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFA 374

Query: 193 LLHKMKEKNVMPD 205
              +MKEK   PD
Sbjct: 375 FFDEMKEKGFTPD 387



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 13/231 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G  +      A   + EM  KG  PD   +NTL   L +   ++ A  L  EM R+
Sbjct: 358 IMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRN 417

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  TYT  I GLCK   + E++++F  +  + C   +  Y+ LIDGL ++ RLE A
Sbjct: 418 NVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEA 477

Query: 121 LELFHSLPRG-------------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LF+ +  G               V D  T   ++  +   GQ+ KA+ L   + ++ V
Sbjct: 478 RMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGV 537

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            P+V+T+ TL++G  ++      + L  +++ K    D      ++D L +
Sbjct: 538 VPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLR 588



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 15/224 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ--- 58
           +I G CK + ++ A+ ++  M+  G  P V+ +N L  GL+  H++E A  LF +M+   
Sbjct: 429 MIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGN 488

Query: 59  ------RDGVAA----DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
                 R  + A    D+ T    ++ +C++G ++++ +L R +       D+  Y+ L+
Sbjct: 489 NPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLL 548

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           +GLCK   L+ AL LF  L       D +TY  +I  L    + + A  LF D+  +   
Sbjct: 549 NGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGT 608

Query: 169 PNVITFGTLIHGFIRINEPSKVIELL--HKMKEKNVMPDASIVS 210
           P++  + +++    R+ + S+ I L   H  ++ N++    ++S
Sbjct: 609 PSMPIYNSMMRSLCRMQKLSQAINLWFDHLPRKYNLLAQDEVIS 652



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 37/238 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  C   +++ A NL   M  KG  PD V +N    GL +  +V+ A +  + ++  
Sbjct: 251 ILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHT 310

Query: 61  G-------------------------------------VAADTRTYTIFIDGLCKNGYIV 83
           G                                     V+ D   YTI I G  + G   
Sbjct: 311 GTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTN 370

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           ++   F  ++      D   Y+ L+  LC +G L+ A  L   + R  +V D+ TY+ MI
Sbjct: 371 DAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMI 430

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
            GL  +  +D+A  +F  M E    P+V+T+  LI G  R +   +   L +KM+  N
Sbjct: 431 IGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGN 488



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 2/181 (1%)

Query: 24  SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYI 82
           + G++P       L        +   A + F  M+ + G    T  Y   +  L  +G  
Sbjct: 132 AAGLQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGGA 191

Query: 83  VE-SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           V  ++ L+  +    C  +   Y+ LI GLCK G    AL+LF  +    +  +V T++I
Sbjct: 192 VPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTI 251

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           ++  + N GQ+ +A +L   ME+    P+ +T+   + G  +     + IE L  ++   
Sbjct: 252 LLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTG 311

Query: 202 V 202
            
Sbjct: 312 T 312



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 36/202 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C++ ++  A  L   ++  G+ PDVV +NTL  GL ++  ++ A +LF E+Q  G
Sbjct: 512 LVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKG 571

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID L +     +++ LF+ +        +  Y+ ++  LC+  +L  A+
Sbjct: 572 FPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAI 631

Query: 122 EL-FHSLPR--GVLVADVV---------------------------------TYSIMIHG 145
            L F  LPR   +L  D V                                  Y+I + G
Sbjct: 632 NLWFDHLPRKYNLLAQDEVISSARKKFEEGCLHEAVRELIKIDQEYGSVNSCPYTIWLIG 691

Query: 146 LYNDGQMDKAHDLFLDMEENAV 167
           L   G+++ A  +F  +EE+ +
Sbjct: 692 LIQAGRIEDALKIFHILEESGI 713



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 2/152 (1%)

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKS 114
           + Q  G+   T  +   I      G   E+VE F  +     C      Y+ ++  L  S
Sbjct: 129 DAQAAGLQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVAS 188

Query: 115 G-RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           G  + +AL L++ +     + +  TY+++IHGL   G    A  LF +M    + PNV T
Sbjct: 189 GGAVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKT 248

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              L+       +  +   LLH M++K   PD
Sbjct: 249 HTILLSSMCNAGQLKEAENLLHSMEDKGCPPD 280


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 117/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +  +   E    +Y +M+++   PD+ + NT    +F+  + E+   +F+E++   
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRR 547

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R+Y+I I GL K G+  E+ ELF +++   C LD +AY+ +IDG CK G++  A 
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        VVTY  +I GL    ++D+A+ LF + +   +  NV+ + +LI GF
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   +L ++ +K + P+    + ++D L K E
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAE 706



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 121/235 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+CK  ++  A  L  EM +KG +P VV + ++  GL +I +++ A+ LF+E +  
Sbjct: 592 IVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  IDG  K G I E+  +   L       ++  ++ L+D L K+  +  A
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEA 711

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  F S+       + VTY I+I+GL    + +KA   + +M++  + P+ I++ T+I G
Sbjct: 712 LVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISG 771

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +    ++   L  + K    +PD++  + +++ L+    ++++   F    R+
Sbjct: 772 LAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  E E    ++ E+ S+   PD   ++ L  GL +       ++LF  M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  G   DTR Y I IDG CK G + ++ +L   ++    E  +  Y  +IDGL K  RL
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       +  +VV YS +I G    G++D+A+ +  ++ +  + PNV T+ +L
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSL 698

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E ++ +     MKE    P+     I+++ L K
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK+++++ A  ++ +M  K   PD +   +L  GL ++ +V+ A+K++++M   
Sbjct: 417 IMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDS 476

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               ++  YT  I     +G   +  ++++ +    C  D+Q  +  +D + K+G  E  
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     V D  +YSI+IHGL   G  ++ ++LF  M+E     +   +  +I G
Sbjct: 537 RAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDG 596

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  + +K  +LL +MK K   P       V+D LAK
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 1/211 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  +++ AL ++ EM  K   P++  +N L   L    +++ AF+L D MQ+ G+  + R
Sbjct: 355 KMGKVDEALRVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVR 413

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I +D LCK+  + E+  +F  +    C  D   +  LIDGL K GR++ A +++  +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM 473

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  + + Y+ +I   +N G+ +  H ++ DM     +P++    T +    +  EP
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEP 533

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            K   +  ++K +  +PDA   SI++  L K
Sbjct: 534 EKGRAMFEEIKSRRFVPDARSYSILIHGLIK 564



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K         L+  M  +G   D   +N +  G  +  +V +A++L +EM+  
Sbjct: 557 ILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK 616

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   IDGL K   + E+  LF   +  + EL++  YS LIDG  K GR++ A
Sbjct: 617 GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   L +  L  +V T++ ++  L    ++++A   F  M+E    PN +T+G LI+G
Sbjct: 677 YLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILING 736

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ + +K      +M+++ + P     + ++  LAK
Sbjct: 737 LCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 108/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   ++ A  L+ E  SK I+ +VVI+++L  G  ++ +++ A+ + +E+ + G
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ LKC  +   Y  LI+GLCK  +   A 
Sbjct: 688 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  +    ++Y+ MI GL   G + +A  LF   + N   P+   +  +I G 
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N       L  + + + +        +++D L KN+
Sbjct: 808 SNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKND 846



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K   ++ A  +Y +ML    + + +++ +L    F   + E   K++ +M    
Sbjct: 453 LIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQN 512

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D +    ++D + K G   +   +F  ++  +   D ++YS LI GL K+G      
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETY 572

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+S+     V D   Y+I+I G    G+++KA+ L  +M+     P V+T+G++I G 
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  I S ++D   K
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 1/203 (0%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L L+ +M   G +P V +  TL  G  +  +V+ A  L DEM+   + AD   Y + ID 
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
             K G +  + + F  +     + D   Y+ +I  LCK+ RL+ A+E+F  L +   V  
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
              Y+ MI G  + G+ D+A+ L          P+VI +  ++    ++ +  + + +  
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFE 367

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +MK K+  P+ S  +I++D+L +
Sbjct: 368 EMK-KDAAPNLSTYNILIDMLCR 389



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 1/210 (0%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           NK  EG  ++   M     +P    + TL      ++  +    LF +MQ  G       
Sbjct: 147 NKLREG-FDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHL 205

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           +T  I G  K G +  ++ L   ++    + DI  Y+  ID   K G++++A + FH + 
Sbjct: 206 FTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIE 265

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              L  D VTY+ MI  L    ++D+A ++F  +E+N   P    + T+I G+    +  
Sbjct: 266 ANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFD 325

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   LL + + K  +P     + ++  L K
Sbjct: 326 EAYSLLERQRAKGSIPSVIAYNCILTCLRK 355



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 47/271 (17%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+ + K  +++ A   + E+ + G+KPD V + ++   L + ++++ A ++F+ ++++
Sbjct: 243 VCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN 302

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-------------ILKC---------- 97
                T  Y   I G    G   E+  L    R             IL C          
Sbjct: 303 RRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEA 362

Query: 98  -----------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        ++  Y+ LID LC++G+L+ A EL  S+ +  L  +V T +IM+  L
Sbjct: 363 LRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRL 422

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A  +F  M+     P+ ITF +LI G  ++      ++  +K+ EK +  D 
Sbjct: 423 CKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGR----VDDAYKIYEKMLDSDC 478

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
              SIV   L KN         F  H R+E+
Sbjct: 479 RTNSIVYTSLIKN---------FFNHGRKED 500



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 2/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C+N   +    +  EM   G  P V     + +   + +++   F +   M++ 
Sbjct: 105 LLVMARCRN--FDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKF 162

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                   YT  I       +    + LF+ ++ L  E  +  ++ LI G  K GR++ A
Sbjct: 163 KFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSA 222

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +    L AD+V Y++ I      G++D A   F ++E N + P+ +T+ ++I  
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGV 282

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             + N   + +E+   +++   +P
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVP 306



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K +EI  AL  +  M      P+ V +  L  GL ++ +  +AF  + EMQ+ G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T +YT  I GL K G I E+  LF   +      D   Y+ +I+GL    R   A 
Sbjct: 758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            LF    R  L     T  +++  L+ +  +++A
Sbjct: 818 SLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQA 851



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK ++   A   + EM  +G+KP  + + T+  GL +   +  A  LFD  + +
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
           G   D+  Y   I+GL      +++  LF   R  +  L I   +C  L+D L K+  LE
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR--RRGLHIHNKTCVVLLDTLHKNDCLE 849

Query: 119 IA 120
            A
Sbjct: 850 QA 851


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 1/203 (0%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I+G+ K K ++ AL ++ ++ ++G  PDVV +NTL  G  ++ +V  A  + DEM   G+
Sbjct: 564 IDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 623

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
                TY + IDG CKNG I ++      +   + E ++  Y+ LIDGLC +GR + A+ 
Sbjct: 624 VPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIH 683

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L++ +       + +++  +IHGL   G  D A   F +M E    P+ I +  LI  FI
Sbjct: 684 LWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERET-PDTIVYVALITSFI 742

Query: 183 RINEPSKVIELLHKMKEKNVMPD 205
               P+   E+L +M  K   PD
Sbjct: 743 SNKNPTLAFEILKEMVAKGKFPD 765



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 8/227 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CK K    A N  +EM+ +G  PD+V ++    G  +I  V++A ++F ++   
Sbjct: 527 LLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICAR 586

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   I+G CK   + E+ ++   +        +  Y+ LIDG CK+G ++ A
Sbjct: 587 GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQA 646

Query: 121 LELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              FH L R V      +V+TY+ +I GL N G+ D A  L+ +M     +PN I+F  L
Sbjct: 647 ---FHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIAL 703

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASI-VSIVVDLLAKNEISL 223
           IHG  +   P   +    +M E+   PD  + V+++   ++    +L
Sbjct: 704 IHGLCKCGWPDAALLYFREMGERET-PDTIVYVALITSFISNKNPTL 749



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 121/241 (50%), Gaps = 3/241 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G C   +++ AL+L+ +M+  G K +V+++N L   L   +++E  + L  EM+  
Sbjct: 422 IVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGS 481

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+      LC+   +  ++++ R +R+   E  I+ Y+ L+  LCK  R   A
Sbjct: 482 GFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEA 541

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 + R   + D+V YS  I G      +D+A ++F D+      P+V+ + TLI+G
Sbjct: 542 CNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLING 601

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEE 237
           F ++   S+  ++L +M  K ++P     ++++D   KN   + + + L      ER+  
Sbjct: 602 FCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPN 661

Query: 238 V 238
           V
Sbjct: 662 V 662



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 52/254 (20%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDV------------------------------ 31
           LI G C  KEIE AL+L SEM   GI PD+                              
Sbjct: 304 LIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTE 363

Query: 32  ---VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
              +++N++  GL     V++A+ L   M  D    +      F+        + E V  
Sbjct: 364 AMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFM--------VKEMVRP 415

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
             T           ++S +IDGLC +G+L++AL LF  + R     +V+ Y+ +I  L N
Sbjct: 416 XTT-----------SFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSN 464

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
             ++++ + L  +M+ +   P   T  ++     R  + +  ++++ +M+     P    
Sbjct: 465 SNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKH 524

Query: 209 VSIVVDLLAKNEIS 222
            +++V  L K + S
Sbjct: 525 YTLLVKQLCKRKRS 538



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   G   D  T T  +   C +    +++ +F  +   +  +D    S L+    K G
Sbjct: 184 EMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEI-YGRGWVDGHVLSILVLTFSKCG 242

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            ++ A EL   +    +  +  T+ ++IHG     ++DKA  LF  M+++  AP+V  + 
Sbjct: 243 EVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYD 302

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            LI G     E  K + LL +MKE  + PD  I+S ++   ++ E+ +  L    + ER 
Sbjct: 303 ALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSE-EVDIYRL----IEERL 357

Query: 236 EEVD 239
           E++D
Sbjct: 358 EDLD 361



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 106/269 (39%), Gaps = 49/269 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  + K  E++ A  L   M   GI+ +      L  G     +V++A +LF +MQ+ 
Sbjct: 233 ILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKS 292

Query: 61  GVAADTRTYTIFIDGLCKNG-----------------------------YIVESVELFRT 91
           G A D   Y   I GLC                                Y  E V+++R 
Sbjct: 293 GFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRL 352

Query: 92  LRILKCELDIQA----YSCLIDGLCKSGRLEIALELFHSLP-----------RGVLVADV 136
           +     +LD +A    Y+ +++GL     ++ A  L  ++            +  +V ++
Sbjct: 353 IEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEM 412

Query: 137 V-----TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           V     ++SI+I GL N G++D A  LF DM       NV+ +  LI      N   +  
Sbjct: 413 VRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 472

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LL +MK     P     + +   L + E
Sbjct: 473 LLLKEMKGSGFRPTQFTHNSIFGCLCRRE 501


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 12/208 (5%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRDGVAADTRTYTIFI 73
           A+ L+S M S G+ P V+  N+L + L +  +   A  +FDEM    GV  DT T+ I I
Sbjct: 116 AIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILI 175

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-- 131
            G CKN  + E    F+ +    CE D+  Y+ L+DGLC++G++ IA    H++ +G+  
Sbjct: 176 RGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIA----HNVVKGMVK 231

Query: 132 ----LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L  DVVTY+ ++ G     ++D+A  +F +M    + PN IT+ TLI G   + + 
Sbjct: 232 KMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKF 291

Query: 188 SKVIELL-HKMKEKNVMPDASIVSIVVD 214
            K+ E+L   +  +  +PD    + +++
Sbjct: 292 DKIKEILGGAVGGRGFVPDTCTYNTLMN 319



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 124/272 (45%), Gaps = 43/272 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD-EMQRD 60
           L+ GYC  +EI+ AL ++ EM+S+G+KP+ + +NTL  GL E+ + ++  ++    +   
Sbjct: 246 LVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGR 305

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT TY   ++  C  G   E++++F+ ++ LK + D   YS LI  LC+ G  E A
Sbjct: 306 GFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERA 365

Query: 121 LELFHSLPR----------GVLVA-------------------------------DVVTY 139
            +LF  L              LVA                               D  +Y
Sbjct: 366 EQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSY 425

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
             +I G   +G  +  + L L M      P+  T+  LI+GF++  EP    + L +M +
Sbjct: 426 KTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLK 485

Query: 200 KNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231
            + +P  S+   ++  L KN+ +  S  SF V
Sbjct: 486 SSYLPKTSVFHSILSELLKNDFARES-ASFVV 516



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 10/229 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           ILI G+CKN  ++     + EM     +PDVV +NTL  GL    +V  A  +   M  +
Sbjct: 173 ILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKK 232

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
              ++ D  TYT  + G C    I E++ +F  +     + +   Y+ LI GLC+  + +
Sbjct: 233 MKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFD 292

Query: 119 IALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              E+      G   V D  TY+ +++   + G  D+A  +F  M+E  V P+  T+  L
Sbjct: 293 KIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVL 352

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVM-------PDASIVSIVVDLLAKN 219
           I    +  +  +  +L  K+ +++++       P  +  + + D L KN
Sbjct: 353 IRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKN 401



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN    + E+E +L   S  +SK          T F  L  I    +AF+ F+   R+G
Sbjct: 4   LINSKPWSTELESSLFSLSPSISK---------TTFFQVLRFIASPPKAFEFFNWASRNG 54

Query: 62  VAADTRTYTIFIDGLCKNGYI-VESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
            A D+R+Y + +D L +NG + +    LF   R     + I+   C  L+     +G   
Sbjct: 55  FAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFN 114

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTL 177
            A++LF  +    +   V+T++ ++  L   G+ + AH +F +M     V P+  TF  L
Sbjct: 115 EAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNIL 174

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I GF + +   +      +M   N  PD    + +VD L +
Sbjct: 175 IRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCR 215


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 116/219 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING  +  ++E   +L+S  L++G+K DVVI +++      +  + +A +++  M ++
Sbjct: 315 ILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TY+I I+GLC+NG ++E+  +F  +     E  +  YS LIDG CKS  L   
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDG 434

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L+  + R   V DVV  S++I+GL   G MD+A   F    +  +  N   F  LI G
Sbjct: 435 FGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDG 494

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R+      +++   M    V+PD    +++V  LA+ 
Sbjct: 495 CFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQ 533



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 111/205 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN + +   +E  L L  E++  G++PD+V +NT+  G   +    +A KLF+ ++  
Sbjct: 595 VLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCG 654

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+TI ID  CK+G + +++ +F ++     E +I  YSCLIDG  K+   E A
Sbjct: 655 RTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESA 714

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL+  +    +  ++V+YSI+I GL   G M++A   F       + P+VI +G LI G
Sbjct: 715 FELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRG 774

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + ++   ++ + L   M    +MPD
Sbjct: 775 YCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G  +   ++ AL L+ ++L KG  PD +I+ TL  G  +        ++F  MQ +
Sbjct: 525 VLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSN 584

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y + I+   + G +   +EL R +     E DI  Y+ +I G C       A
Sbjct: 585 GIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKA 644

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  L  G    + +T++I+I     DG+MD A  +F  M E    PN++T+  LI G
Sbjct: 645 IKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDG 704

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +        EL  KM    V P+    SI++D L K
Sbjct: 705 YFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCK 742



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 119/228 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C   +I  A + +  M+  G  P++V  +TL     +  +++ AF L++ M   G
Sbjct: 246 ILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKG 305

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y+I I+GL + G + E   LF        ++D+  +S ++D   + G L  A+
Sbjct: 306 IVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAI 365

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++  + +  +  +VVTYSI+I+GL  +G++ +A  +F  + +  + P+V+T+ +LI GF
Sbjct: 366 EVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGF 425

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +         L   M  K  +PD  + S++++ L++  +   +L  F
Sbjct: 426 CKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFF 473



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI+G+CK++ +     LY  ML KG  PDVV+ + L  GL     ++ A + F +     
Sbjct: 421 LIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRG 480

Query: 58  --------------------QRDG-----------VAADTRTYTIFIDGLCKNGYIVESV 86
                                RDG           V  D  TYT+ + GL + G + E++
Sbjct: 481 LTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEAL 540

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            LF  L       D   Y  LIDG CK       L++F  +    +  D+  Y+++I+  
Sbjct: 541 ALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMF 600

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           + +G ++   +L  ++ +  + P+++T+ T+I G+  +   SK I+L   +K     P+A
Sbjct: 601 FREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNA 660

Query: 207 SIVSIVVDLLAKN 219
              +I++D   K+
Sbjct: 661 ITFTILIDAYCKD 673



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 90/152 (59%), Gaps = 2/152 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ YCK+  ++ A+ ++S ML +G +P+++ ++ L  G F+    E AF+L+++M  D
Sbjct: 665 ILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGD 724

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ +  +Y+I IDGLCK G + E+   F+         D+ AY  LI G CK GRL  A
Sbjct: 725 RVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEA 784

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           + L+ H L  G++  D++  ++  +G + D Q
Sbjct: 785 MMLYDHMLVNGIMPDDLLQKALAEYG-FQDSQ 815



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            + N + K  E+E  LN +  ++ +G+ P +V  N +  GL   +Q+  A   FD M R 
Sbjct: 210 FVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRS 269

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  T++  I+  CK   + E+  L+  +       D+  YS LI+GL ++G+LE  
Sbjct: 270 GPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEG 329

Query: 121 LELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             LF  +L RGV + DVV +S ++      G + KA +++  M +  ++PNV+T+  LI+
Sbjct: 330 NSLFSMALARGVKM-DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILIN 388

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G  R     +   +  ++ ++ + P     S ++D   K+E
Sbjct: 389 GLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSE 429



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 30/190 (15%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R+  +  +  Y+  +   C+NG +  +V+ F  +  +   +   A S ++D L  S R++
Sbjct: 133 RNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRID 192

Query: 119 IALELFHSLPRGV------------------------------LVADVVTYSIMIHGLYN 148
           + LE +  + +G+                              LV  +V  + ++ GL  
Sbjct: 193 VILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCM 252

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
             Q+  A D F  M  +  +PN++TF TLI+ + +     +   L + M EK ++PD  I
Sbjct: 253 GNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVI 312

Query: 209 VSIVVDLLAK 218
            SI+++ L +
Sbjct: 313 YSILINGLFR 322


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 70/283 (24%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK  ++E A  +   M ++G+  DVV +N+L  GL    +V+ A  + D M+RDG
Sbjct: 180 LVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDG 239

Query: 62  VAADTRTYTIFI-----------------------------------DGLCKNGYIVESV 86
           V  +  TYT+FI                                    GLCK+G   E+ 
Sbjct: 240 VEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAY 299

Query: 87  ELFRTLR--------ILKCEL---------------------------DIQAYSCLIDGL 111
            LFR +         +  C L                           D+  Y+ L+D L
Sbjct: 300 ALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWL 359

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           CK G+++ A ++F          + VTY+++I  L   G +D A  +  +MEE +++PNV
Sbjct: 360 CKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNV 419

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +TF ++I+G ++     K  + + +MKE+ + P+      V+D
Sbjct: 420 VTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVID 462



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 35/249 (14%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           YC+   ++ A +LY EM+ KG+ PDVV  + L  GL +  +   A+ LF EM++ G A +
Sbjct: 254 YCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPN 313

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF- 124
             TY + ID L K     ES+ L   +      +D+  Y+ L+D LCK G+++ A ++F 
Sbjct: 314 HVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFR 373

Query: 125 HSL-----PRGV-----------------------------LVADVVTYSIMIHGLYNDG 150
           H+L     P GV                             +  +VVT+S +I+GL   G
Sbjct: 374 HALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRG 433

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            + KA D   +M+E  + PNV+T+GT+I G  +       +++ H+M  + V  +  IV 
Sbjct: 434 WVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVD 493

Query: 211 IVVDLLAKN 219
            +V+ L KN
Sbjct: 494 SLVNGLKKN 502



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING  K   +  A +   EM  +GI P+VV + T+  G F+    E A  ++ EM  +G
Sbjct: 425 IINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEG 484

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +       ++GL KNG I ++  LFR +      LD   Y+ LIDGL K+G L  A 
Sbjct: 485 VEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAF 544

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   L    L+ D V Y++ I+ L   G+  +A     +M+   + P+ +T+ T+I   
Sbjct: 545 KVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQ 604

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R  + +K ++LL+ MK  ++ P+
Sbjct: 605 SREGKTAKALKLLNGMKRSSIKPN 628



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 2/216 (0%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGI--KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           G C++  ++ A  L   M+  G     DVV  N+L  G  ++  +E AF + + M+  GV
Sbjct: 146 GLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGV 205

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D   Y   + GLC+ G +  + ++  T++    E ++  Y+  I   C+   ++ A  
Sbjct: 206 GVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFS 265

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L+  + R  ++ DVVT S ++ GL  DG+  +A+ LF +ME+   APN +T+  LI    
Sbjct: 266 LYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLA 325

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    ++ + LL ++  + V+ D  + + ++D L K
Sbjct: 326 KAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCK 361



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 101/224 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C N     A+ +  EM  +GI PD +  N L +G F+   ++ AF  +D+M   G
Sbjct: 705 LVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHG 764

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  T+   + GL   G I ES  +   ++    E     Y  L+ G  K      A+
Sbjct: 765 ISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAV 824

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +     +  V TY+ +I      G M +A +LF +M+   V P   T+  L+ G+
Sbjct: 825 RLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGW 884

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            ++   ++V + L  MKEK   P    +S +    +K  +S  +
Sbjct: 885 SKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEA 928



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 101/205 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K    E AL++Y EML +G++ +  I ++L  GL +  ++E+A  LF EM   G
Sbjct: 460 VIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERG 519

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT  IDGL K G +  + ++ + L       D   Y+  I+ LC  G+ + A 
Sbjct: 520 VLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAE 579

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L  D VTY+ MI     +G+  KA  L   M+ +++ PN+IT+ TLI G 
Sbjct: 580 SFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGL 639

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
                  K   LL++M      P +
Sbjct: 640 FEAGAVEKAKYLLNEMSSSGFSPTS 664



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 2/211 (0%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA--DTRTYTIFIDG 75
           L +EM  +G+  D V  NT+ +GL    +V+RA  L + M R G     D   +   +DG
Sbjct: 124 LLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDG 183

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
            CK G +  +  +   ++     +D+  Y+ L+ GLC++G ++ A ++  ++ R  +  +
Sbjct: 184 YCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPN 243

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTY++ I        +D A  L+ +M    V P+V+T   L+ G  +    S+   L  
Sbjct: 244 VVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFR 303

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           +M++    P+     +++D LAK +    SL
Sbjct: 304 EMEKIGAAPNHVTYCMLIDTLAKAQRGNESL 334



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 110/225 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  KN +IE A  L+ EM  +G+  D V + TL  GLF+   +  AFK+  E+    
Sbjct: 495 LVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKN 554

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y +FI+ LC  G   E+      ++    + D   Y+ +I    + G+   AL
Sbjct: 555 LLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKAL 614

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + + R  +  +++TYS +I GL+  G ++KA  L  +M  +  +P  +T   ++   
Sbjct: 615 KLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQAC 674

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            +      ++E+   M    +  D ++ + +V +L  N ++  ++
Sbjct: 675 SQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAM 719



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           D V +N +  G  E   +     L  EM + GV  D  T    + GLC++G +  +  L 
Sbjct: 102 DTVSYNVVMSGFSEQGGLAPE-ALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALA 160

Query: 90  RTLRILKC--ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
             +        LD+  ++ L+DG CK G +E A  +   +    +  DVV Y+ ++ GL 
Sbjct: 161 EVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLC 220

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G++D A D+   M+ + V PNV+T+   I  + R N       L  +M  K V+PD  
Sbjct: 221 RAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVV 280

Query: 208 IVSIVVDLLAKN 219
            +S +V  L K+
Sbjct: 281 TLSALVGGLCKD 292



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 37/252 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+   K +    +L+L  E++S+G+  D++++  L   L +  +++ A  +F     D
Sbjct: 319 MLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSD 378

Query: 61  GVAADTRTYTIFIDGLC-----------------------------------KNGYIVES 85
               +  TYT+ ID LC                                   K G++ ++
Sbjct: 379 NHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKA 438

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIH 144
            +  R ++    + ++  Y  +IDG  K    E AL+++H  L  GV V   +  S +++
Sbjct: 439 TDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDS-LVN 497

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL  +G+++KA  LF +M E  V  + + + TLI G  +        ++  ++ EKN++P
Sbjct: 498 GLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLP 557

Query: 205 DASIVSIVVDLL 216
           DA + ++ ++ L
Sbjct: 558 DAVVYNVFINCL 569



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 41/258 (15%)

Query: 1   ILINGYC---KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           + IN  C   K+KE E  L    EM S G+KPD V +NT+        +  +A KL + M
Sbjct: 564 VFINCLCMLGKSKEAESFLE---EMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGM 620

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-------------RILK-CE----- 98
           +R  +  +  TY+  I GL + G + ++  L   +             R+L+ C      
Sbjct: 621 KRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRS 680

Query: 99  ----------------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
                            DI  Y+ L+  LC +G    A+ +   +    +  D +T++ +
Sbjct: 681 DLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNAL 740

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I G +  G +D A   +  M  + ++PNV TF TL+ G        +   +L++MK++ +
Sbjct: 741 ILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGI 800

Query: 203 MPDASIVSIVVDLLAKNE 220
            P      I+V    K  
Sbjct: 801 EPSNLTYDILVTGYGKQS 818



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L ++  M++ G+  D+ ++NTL   L       +A  + +EM   G+A DT T+   I G
Sbjct: 684 LEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILG 743

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
             K+G++  +   +  +       ++  ++ L+ GL  +GR+  +  + + + +  +   
Sbjct: 744 HFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPS 803

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
            +TY I++ G        +A  L+ +M      P V T+  LI  F ++   S+  EL +
Sbjct: 804 NLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFN 863

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +M+ + V+P +    I+V   +K
Sbjct: 864 EMQNRGVLPTSCTYDILVSGWSK 886



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K   +  A  +  E+  K + PD V++N     L  + + + A    +EMQ  G
Sbjct: 530 LIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTG 589

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
           +  D  TY   I    + G   ++++L   ++    + ++  YS LI GL ++G +E A 
Sbjct: 590 LKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAK 649

Query: 121 ----------------------------------LELFHSLPRGVLVADVVTYSIMIHGL 146
                                             LE+   +    L AD+  Y+ ++  L
Sbjct: 650 YLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVL 709

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G   KA  +  +M    +AP+ ITF  LI G  +            +M    + P+ 
Sbjct: 710 CYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNV 769

Query: 207 S 207
           +
Sbjct: 770 A 770



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ GY K      A+ LY EM+ KG  P V  +N L     ++  + +A +LF+EMQ  
Sbjct: 809 ILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNR 868

Query: 61  GVAADTRTYTIFIDGLCK 78
           GV   + TY I + G  K
Sbjct: 869 GVLPTSCTYDILVSGWSK 886


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 109/200 (54%), Gaps = 2/200 (1%)

Query: 25  KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84
           KG +  V  +N     L + +  + A++ F +MQR G   D  TY+I + GLCK G + +
Sbjct: 32  KGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDK 91

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR-GVLVADVVTYSIMI 143
           + EL   LR    +L++  YS +IDG CK+ R++ ALE+F ++   G  V DVVT++ ++
Sbjct: 92  AKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLL 151

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            GL +  +M +A  LF  M +    PNVI++ TL+ G  +     +   L  +M EK+ +
Sbjct: 152 KGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 204 PD-ASIVSIVVDLLAKNEIS 222
           PD  +  S V  L   N ++
Sbjct: 212 PDLVAYTSFVTGLCKANRVA 231



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK K+++ A  L +EM + G+ PDVV ++ L  GL ++ +++RA  L +EM ++
Sbjct: 344 IMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE 403

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D+ T    ++ L K G +  ++    T++      D+  Y+ L+DGLCK+GR++ A
Sbjct: 404 GVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEA 463

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +     +       DV +Y+I+I  L   GQ   AH +F +M +  V P+ + + +L+ G
Sbjct: 464 ITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDG 523

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R       +ELL   K     PD  +  +V+D L K
Sbjct: 524 LARNGLEDLALELL---KTSLCKPDFVMHKMVLDGLCK 558



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A   + +M  +G  PD   ++ +  GL +  ++++A +L  +++  GV  +  TY++ ID
Sbjct: 57  AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116

Query: 75  GLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
           G CK   + +++E+F+T+     C  D+  ++ L+ GLC   R+  A  LF  + +    
Sbjct: 117 GCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            +V++YS ++ GL   G++D+A  L+ +M E +  P+++ + + + G  + N  ++  + 
Sbjct: 177 PNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDC 236

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAKN 219
             KM  K    DA   S V+ +L K 
Sbjct: 237 CRKMVTKGSKADAVAFSTVIGILCKK 262



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 110/239 (46%), Gaps = 21/239 (8%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I+G CK   ++ AL ++  M S G   PDVV  N+L  GL    ++  AF LF+ M +
Sbjct: 113 VVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAK 172

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  +Y+  +DGLCK G + E+  L+  +    C  D+ AY+  + GLCK+ R+  
Sbjct: 173 AGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAE 232

Query: 120 ALELFHSLPRGVLVADVVTYSI-----------------MIHGLYNDGQMDKAHDLFLDM 162
           A +    +      AD V +S                  MI  L   G +D+A   F +M
Sbjct: 233 ACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEM 292

Query: 163 EENAVAPNVITFGTLIHGFIRINE-PSKVI--ELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 P+   F TLIH   +    P  V+  + +  MKE    P+    +I+VD L K
Sbjct: 293 ISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCK 351



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR- 59
           I++ G CK  E++ A  L  ++   G+K +V+ ++ +  G  +  +V+ A ++F  M   
Sbjct: 78  IVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSG 137

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  T+   + GLC    + E+  LF  +    CE ++ +YS L+DGLCK+GRL+ 
Sbjct: 138 GGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           A  L+  +     V D+V Y+  + GL    ++ +A D    M       + + F T+I
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVI 256



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 12/244 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI+  CK+K +   + L+  M S       P++  +N +   L +  Q++ A +L +EM 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G++ D  TY+  +DGLCK G +  + +L   +       D    + +++ L K+G+++
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            AL    ++       D+VTY+ ++ GL   G++D+A      M      P+V ++  +I
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-------EISLNSL--PSF 229
               R  + +    +  +M ++ V+PD  +   ++D LA+N       E+   SL  P F
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDF 546

Query: 230 TVHE 233
            +H+
Sbjct: 547 VMHK 550



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C++  ++ A   + EM+S+   P   + NTL   + +  ++     LF  M+   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 62  ---VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
                 +  TY I +D LCK   + E+ EL   +       D+  YS L+DGLCK G+L+
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L   + +  +  D  T + +++ L   G++D A      M+     P+++T+ TL+
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            G  +     + I  L KM      PD    +I++  L ++
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRS 492



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   I+ A+   ++M++    PDV  +  +   L    Q   A  +F EM + G
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  DT  Y   +DGL +NG    ++EL +T     C+ D   +  ++DGLCK+G+ E A 
Sbjct: 510 VLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVLDGLCKAGKAEDAC 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           E+   +      AD  TY  ++ GL   G++DKA  L  D  E 
Sbjct: 567 EVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASET 610


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK  E+  A  LY +M+     P+V  +N    GL    ++  A  +++EM   
Sbjct: 162 ILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISA 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY+  I G        ++ ELF  +    C  +   Y+CL+ GLCK  + + A
Sbjct: 222 GCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +       D VTY+ +++G  N G++++A ++F +M      P+V+ +  L+ G
Sbjct: 282 HELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKG 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  +P +  +L   M  +   PD    +I++D L+K
Sbjct: 342 FFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSK 379



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+N  CK K++  A  ++S M+S + + PDVV ++ L  G  +I ++ RA KL+ +M   
Sbjct: 127 LLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY  F++GL + G I ++  ++  +    C  D+  YS LI G   + + + A
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQA 246

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF ++       + VTY+ ++HGL  + + D+AH+LF  M E    P+ +T+ TL++G
Sbjct: 247 HELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYG 306

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F  + +  + +E+  +M  K   PD
Sbjct: 307 FCNVGKIEQAVEVFDEMVSKGHDPD 331



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 122/219 (55%), Gaps = 7/219 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+   ++ + A  L+  M+S+G +P+ V +N L  GL +  + + A +LF +M   G
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  + G C  G I ++VE+F  +     + D+ AY+CL+ G  ++G+   A 
Sbjct: 293 CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAR 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHG 180
           +LF  +       D V+++IMI GL    ++D A ++F  ME++   +P+++T+ +LI G
Sbjct: 353 QLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFG 412

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
                R++E  KV + + ++K   + PD    +++++ +
Sbjct: 413 LCGEQRLSEAMKVFKEIDRLK---LSPDPHAFNVLLEAM 448



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 2/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +NG  +   I  A  +Y EM+S G  PDV+ ++TL  G     + ++A +LF+ M   G
Sbjct: 198 FLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRG 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   + GLCK     E+ ELFR +    C+ D   Y+ L+ G C  G++E A+
Sbjct: 258 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAV 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       DVV Y+ ++ G +  G+  +A  LF  M      P+ ++   +I G 
Sbjct: 318 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGL 377

Query: 182 IRINEPSKVIELLHKMKEKN-VMPD-ASIVSIVVDLLAKNEIS 222
            +       +E+  +M++ +   PD  +  S++  L  +  +S
Sbjct: 378 SKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLS 420



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           +I   CK   ++ AL+L   M+ +G  PD+  H+ L   L +  +++ A +    M R  
Sbjct: 55  VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTI 114

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLE 118
              A+   +Y   ++ LCK   + ++  +F T+   +  + D+ +YS LIDG CK   L 
Sbjct: 115 STRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELG 174

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L+  +     V +V TY+  ++GL   G++  A  ++ +M     +P+VIT+ TLI
Sbjct: 175 RAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLI 234

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           HGF    +  +  EL   M  +   P+A   + ++  L K
Sbjct: 235 HGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCK 274



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 18/183 (9%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSC--LIDGLCKSGRLEIALELF 124
            +T F+ GLCK+G I ++ E  RT++  L       + +C  +I  LCK+GR++ AL L 
Sbjct: 13  AWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLL 72

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE--NAVAPNVITFGTLIHGFI 182
            ++ +     D+ T+S++I+ L    ++ +A +    M    +  A +  ++ +L++   
Sbjct: 73  ETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLC 132

Query: 183 RINEPSKVIELLHKM-KEKNVMPDASIVSIVVD------------LLAKNEISLNSLPSF 229
           +  +  +   +   M  E++V+PD    SI++D             L K  I LN +P+ 
Sbjct: 133 KAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNV 192

Query: 230 TVH 232
           T +
Sbjct: 193 TTY 195



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV---TYSIMIHGLYNDGQM 152
           K  L+  A++  + GLCKSG++E A E   ++   +  +      T   +I  L   G++
Sbjct: 6   KAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRV 65

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           D A  L   M +    P++ T   LI+   + ++  +  E L  M
Sbjct: 66  DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 113/208 (54%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E    ++ E++ +G KPD+ + NT    +F+  +VE+   +F++++  G   D R+Y+I 
Sbjct: 244 EDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSIL 303

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I GL K G   E+  +F  ++     LD +AY+ ++DG CKSG++  A E+   +    +
Sbjct: 304 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 363

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
              V TY  ++ GL    ++D+A+ LF + +   +  NV+ + +LI GF ++    +   
Sbjct: 364 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 423

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +L +M +K + P+    + ++D L K E
Sbjct: 424 ILEEMMKKGLTPNVYTWNSLLDALVKAE 451



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK +++E A  ++     +G  PD V + +L  GL +  QV+ A++LF++M   
Sbjct: 162 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+   YT  I     +G   +  ++F+ L    C+ D+   +  +D + K+G +E  
Sbjct: 222 GHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     + DV +YSI+IHGL   GQ  +  ++F  M++   A +   +  ++ G
Sbjct: 282 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDG 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  K  E+L +MKEK V P  +    +VD LAK
Sbjct: 342 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 379



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+CK+ ++  A  +  EM  K ++P V  +  +  GL +I +++ A+ LF+E +  G
Sbjct: 338 VVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKG 397

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   +       ++  ++ L+D L K+  +  AL
Sbjct: 398 IELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 457

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       +  TYSI+I+GL    + +KA   + DM++  + PNV+T+ T+I G 
Sbjct: 458 VCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 517

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++   +    L  + K    +PDA+  + +++
Sbjct: 518 AKVGNITDAYSLFERFKANGGIPDAASFNALIE 550



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  E+E    ++ ++ S G  PDV  ++ L  GL +  Q      +F  M++ G A D R
Sbjct: 274 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 333

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y   +DG CK+G + ++ E+   ++    +  +  Y  ++DGL K  RL+ A  LF   
Sbjct: 334 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 393

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +  +VV YS +I G    G++D+A+ +  +M +  + PNV T+ +L+   ++  E 
Sbjct: 394 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 453

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++ +     MKE    P+    SI+++ L +
Sbjct: 454 NEALVCFQSMKEMKCPPNTYTYSILINGLCR 484



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 101/184 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K   ++ A  L+ E  SKGI+ +VV++++L  G  ++ +++ A+ + +EM + G
Sbjct: 373 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 432

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ +KC  +   YS LI+GLC+  +   A 
Sbjct: 433 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 492

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  LV +VVTY+ MI GL   G +  A+ LF   + N   P+  +F  LI G 
Sbjct: 493 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 552

Query: 182 IRIN 185
              N
Sbjct: 553 SNAN 556



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K  +++ A  L+ +ML  G   + V++ +L    F   + E   K+F E+ R G
Sbjct: 198 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D      ++D + K G + +   +F  +R      D+++YS LI GL K+G+     
Sbjct: 258 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH++ +     D   Y+ ++ G    G++ KA+++  +M+E  V P V T+G ++ G 
Sbjct: 318 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 377

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  + S ++D   K
Sbjct: 378 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 414



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  +     N++  M  +G   D   +N +  G  +  +V +A+++ +EM+  
Sbjct: 302 ILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK 361

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     TY   +DGL K   + E+  LF   +    EL++  YS LIDG  K GR++ A
Sbjct: 362 CVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEA 421

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  L  +V T++ ++  L    ++++A   F  M+E    PN  T+  LI+G
Sbjct: 422 YLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILING 481

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ + +K       M+++ ++P+    + ++  LAK
Sbjct: 482 LCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 519



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GY      E A  L   +  +G  P VV  N++   L +  +V+ A  LF+ M++D 
Sbjct: 59  MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD- 117

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++ TY I ID LC  G + E+  +   +       ++   + ++D LCK+ +LE A 
Sbjct: 118 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAY 177

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S  +     D VTY  +I GL   GQ+D+A+ LF  M +     N + + +LI  F
Sbjct: 178 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 237

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     ++  ++  +   PD ++++  +D + K
Sbjct: 238 FIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFK 274



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 36/247 (14%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K ++++ AL+L+ E++ K  +P+   +N +   L    +VE A+++ DEM+   +  +  
Sbjct: 100 KKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLL 158

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I +D LCK   + E+ ++F +     C  D   Y  LIDGL K G+++ A  LF  +
Sbjct: 159 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 218

Query: 128 PRGVLVADVVTYS-----IMIHG------------------------------LYNDGQM 152
                 A+ V Y+       IHG                              ++  G++
Sbjct: 219 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEV 278

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           +K   +F D+      P+V ++  LIHG  +  +  +   + H MK++    DA   + V
Sbjct: 279 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 338

Query: 213 VDLLAKN 219
           VD   K+
Sbjct: 339 VDGFCKS 345



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 91/191 (47%), Gaps = 1/191 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK   +  A  L+++M ++   P    +NT+ +G     + E A+KL + ++  G     
Sbjct: 29  CKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSV 88

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            ++   +  L K   + E++ LF  ++    E +   Y+ +ID LC  GR+E A  +   
Sbjct: 89  VSFNSILTCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDE 147

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    L  +++T +IM+  L    ++++A+ +F    +    P+ +T+ +LI G  +  +
Sbjct: 148 MEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQ 207

Query: 187 PSKVIELLHKM 197
             +   L  KM
Sbjct: 208 VDEAYRLFEKM 218



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A+K F E++  G+  D  +YT  I  LCK G + E+ ELF  +   +      AY+ +I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G   +GR E A +L   L     +  VV+++ ++  L    ++D+A  LF  M+++A  P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EP 120

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           N  T+  +I          +   +L +M+  ++ P+   V+I+VD L K
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 169



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 97/204 (47%), Gaps = 1/204 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A   + E+ ++G+KPD V + ++   L +  ++  A +LF +M+ +        Y   I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G    G   ++ +L   LR   C   + +++ ++  L K  +++ AL LF  + +     
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EP 120

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +  TY+I+I  L   G++++A+ +  +ME  ++ PN++T   ++    +  +  +  ++ 
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
               ++   PD      ++D L K
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGK 204



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K +EI  AL  +  M      P+   ++ L  GL  + +  +AF  + +MQ+ G
Sbjct: 443 LLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG 502

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I GL K G I ++  LF   +      D  +++ LI+G+  + R   A+
Sbjct: 503 LVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANR---AM 559

Query: 122 ELFHS 126
           E + +
Sbjct: 560 EAYQA 564



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%)

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +A + FH L    L  D V+Y+ MI  L   G++ +A +LF  ME     P    + T+I
Sbjct: 1   MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 60

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
            G+          +LL +++E+  +P     + ++  L K      +L  F V ++  E 
Sbjct: 61  MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEP 120

Query: 239 DESN 242
           + S 
Sbjct: 121 NSST 124



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 47/87 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+ ++   A   + +M  +G+ P+VV + T+  GL ++  +  A+ LF+  + +
Sbjct: 477 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 536

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVE 87
           G   D  ++   I+G+      +E+ +
Sbjct: 537 GGIPDAASFNALIEGMSNANRAMEAYQ 563


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C    I+ AL L+  ML +G+ P+ +  +TL  GLF+  + E+A  L+ E    G
Sbjct: 435 LLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  T+   I+GLCK G + E+ EL   ++ L+C  D   Y  L DG CK G+L  A 
Sbjct: 495 LAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTAT 554

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +        V  ++  I G +   Q  K +D+  +M    ++PN++T+G LI G+
Sbjct: 555 HLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGW 614

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   L  +M    + P+  I S ++    K
Sbjct: 615 CKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYK 651



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++INGYC+   ++ A  + +EM   GI  ++ ++NT+  GL ++ ++E   K+  EM+  
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDV 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +Y   IDG C+ G + ++ E+ R +           Y+ L+ G C    ++ A
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 121 LEL-FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L F  L RGV   + ++ S ++ GL+  G+ ++A +L+ +     +A NVITF T+I+
Sbjct: 449 LRLWFLMLKRGV-APNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVIN 507

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +I   ++  ELL +MKE    PD+     + D   K
Sbjct: 508 GLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCK 546



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 26/231 (11%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK   +  A NLY EM++ G+ P+V I + L    ++  +V+ A  +  ++    
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNID 669

Query: 62  VAADTRTYTIFID--------------------------GLCKNGYIVESVELFRTLRIL 95
           +       TI ID                          GLCK+G I ++  LF +LR  
Sbjct: 670 MIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNK 729

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           +   D   YS LI G   SG ++ A  L   +    L  +++TY+ +I+GL   G++ +A
Sbjct: 730 RFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRA 789

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            +LF  ++   ++PN IT+ TLI  + +  + ++  +L  KM E+  M +A
Sbjct: 790 VNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEA 840



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+   +  A  +   M+  G+    + +NTL  G   +H ++ A +L+  M + G
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  + +  +DGL K G   +++ L++         ++  ++ +I+GLCK GR+  A 
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAE 519

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       D +TY  +  G    GQ+  A  L   ME    AP+V  F + I G 
Sbjct: 520 ELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGH 579

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  KV ++  +M  + + P+
Sbjct: 580 FIAKQWHKVNDIHSEMSARGLSPN 603



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 19/208 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK+  I  A +L+  + +K   PD   +++L  G      ++ AF L D M   
Sbjct: 705 VIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSA 764

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I GLCK+G +  +V LF  L+      +   Y+ LID  CK G+   A
Sbjct: 765 GLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEA 824

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L                      +  +G M++A  L   M EN V PN IT+ TLIHG
Sbjct: 825 FKLKQK-------------------MVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHG 865

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
           +I+     ++ +L  +M  + ++P   I
Sbjct: 866 YIKSGNMEEISKLYDEMHIRGLLPTNWI 893



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  +    ++  ALN++  M   G +P +   N L   L +      A  ++ +M+  
Sbjct: 153 LLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIA 212

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T  I     C++G + ++VE    +  +  E+++ AY  ++D  C  G  E A
Sbjct: 213 GVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDA 272

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIH 179
             +  SL R  L  +VVTY++++ G   DG+M++A  +  +M+E   +  + + +G +I+
Sbjct: 273 RRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMIN 332

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G+ +         + ++M++  +  +  + + +++ L K
Sbjct: 333 GYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 113/251 (45%), Gaps = 34/251 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++  CK+ ++  A+ +   M     KPDVV  NTL  GL +  +++ A ++ DEM+R G
Sbjct: 60  FVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSG 119

Query: 62  VAA--------------------------------DTRTYTIFIDGLCKNGYIVESVELF 89
            AA                                DT+TY   I G CK+G I  +    
Sbjct: 120 FAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFL 179

Query: 90  RTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHGLY 147
             ++    C  D   YS LI+GLCKS  L  A EL   +  R    A VV ++ ++ G  
Sbjct: 180 EEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYC 239

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
               +D+A +L   M E+  AP+V+T+ T+I G  R  +  K   LL KM  +   PD  
Sbjct: 240 KAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVV 299

Query: 208 IVSIVVDLLAK 218
             +++V  L K
Sbjct: 300 TYTVLVTGLCK 310



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 118/251 (47%), Gaps = 34/251 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE------------------ 43
           LI G CK   ++ A  +  EM   G   ++V +NTL  GL                    
Sbjct: 95  LIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTP 154

Query: 44  --------IH------QVERAFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
                   IH      +++RA+   +EM QR G + DT TY+I I+GLCK+  + ++ EL
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADEL 214

Query: 89  FRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
            + +   K C   + A++ L+DG CK+  L+ A EL  S+       DVVTYS +I GL 
Sbjct: 215 LQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLC 274

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G +DK   L   M      P+V+T+  L+ G  +  +  +   L+ +M E    P+A 
Sbjct: 275 RCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAV 334

Query: 208 IVSIVVDLLAK 218
             S+V D L K
Sbjct: 335 TYSLVFDGLCK 345



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           +I+G+CK+ EI+ A     EM  + G  PD   ++ L  GL +   + +A +L  EM  R
Sbjct: 162 IIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGR 221

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
               A    +   +DG CK   +  + EL  ++    C  D+  YS +IDGLC+ G ++ 
Sbjct: 222 KDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDK 281

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
              L   +       DVVTY++++ GL   G+M +A  L   M E+   PN +T+  +  
Sbjct: 282 GFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFD 341

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G  +I++     +LL  +++K  + D
Sbjct: 342 GLCKIDKLDMANDLLTSIRDKGRITD 367



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 46  QVERAFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           +++ A  L  EM Q+ G+A     Y  F+  LCK+G + E++E+ + ++   C+ D+  +
Sbjct: 33  ELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTF 92

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI GLCK+GRL+ A ++   + R    A++VTY+ +I+GL + G+  +A    L M+ 
Sbjct: 93  NTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEA---VLVMQG 149

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNE 220
               P+  T+  +IHGF +  E  +    L +MK++    PD    SI+++ L K+ 
Sbjct: 150 MTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSS 206



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 80/142 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK ++++ A  L S ML  G  PDVV ++T+  GL     V++ F L ++M   G
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT+ + GLCK G +VE+  L + +    C  +   YS + DGLCK  +L++A 
Sbjct: 294 CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMAN 353

Query: 122 ELFHSLPRGVLVADVVTYSIMI 143
           +L  S+     + DVV +  ++
Sbjct: 354 DLLTSIRDKGRITDVVAFEALL 375



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 1/179 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILING CK+  +  A  L  EM+  K     VV  NTL  G  +   ++RA +L   M  
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE 256

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G A D  TY+  IDGLC+ G + +   L   +    C+ D+  Y+ L+ GLCK+G++  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           A  L   +       + VTYS++  GL    ++D A+DL   + +     +V+ F  L+
Sbjct: 317 ACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 104/253 (41%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L+  +C   E++ A++L  EM  + G+ P   ++N     L +  +V  A ++   M+ 
Sbjct: 23  VLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD 82

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVE--------------------------------SVE 87
                D  T+   I GLCK G + E                                S E
Sbjct: 83  GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGE 142

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADVVTYSIMIHGL 146
               ++ +    D Q Y+ +I G CKSG ++ A      +  R     D  TYSI+I+GL
Sbjct: 143 AVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGL 202

Query: 147 YNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                + KA +L  +M        +V+ F TL+ G+ +  +  +  ELL  M E    PD
Sbjct: 203 CKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPD 262

Query: 206 ASIVSIVVDLLAK 218
               S ++D L +
Sbjct: 263 VVTYSTIIDGLCR 275


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  ++  A  L  EM++K I P+ +  N L  G      V  A K+F+EMQR G
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I+GLC NG + E++ L   +  +  + ++  Y+ LI+G CK   L+ A 
Sbjct: 330 LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAR 389

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  L  +V+T++ +I      G+MD A  L   M +  V PNV T+  LI GF
Sbjct: 390 EMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGF 449

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     +  +L  +M+   +  D    +I+VD L K
Sbjct: 450 CREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 114/216 (52%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C N +++ AL L  +M   G+KP+VV +N L  G  +   ++ A ++ D++ + G
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  T+   ID   K G + ++  L   +       ++  Y+CLI G C+ G ++ A 
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEAR 459

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM---EENAVAPNVITFGTLI 178
           +L   +    L AD+VTY+I++  L   G+  KA  L  +M   E+     N++T+  LI
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLI 519

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            GF    +  +   LL++M EK ++P+ +   I+ D
Sbjct: 520 KGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 555



 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 112/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK  + + A ++  +M + G  P V+ +NT+  G  +  ++ +A  L  EM   
Sbjct: 234 VVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK 293

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+ I IDG C++  +  + ++F  ++    + ++  Y+ LI+GLC +G+L+ A
Sbjct: 294 RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +    L  +VVTY+ +I+G      + +A ++  D+ +  +APNVITF TLI  
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +         L   M +  V P+ S  + ++
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 109/202 (53%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++Y EM+ + I  +VV  + +  GL ++ + ++A  + ++M+  G +    TY   IDG 
Sbjct: 215 SVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           CK G + ++  L + +   +   +   ++ LIDG C+   +  A ++F  + R  L  +V
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNV 334

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VTY+ +I+GL ++G++D+A  L   M    + PNV+T+  LI+GF +     +  E+L  
Sbjct: 335 VTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDD 394

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           + ++ + P+    + ++D   K
Sbjct: 395 IGKRGLAPNVITFNTLIDAYGK 416



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 107/221 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y KN E++ AL  +      G +   +  N + + L +  ++     ++ EM R 
Sbjct: 164 MLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRR 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+ + I+GLCK G   ++ ++   ++       +  Y+ +IDG CK+G++  A
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  + +T++I+I G   D  +  A  +F +M+   + PNV+T+ +LI+G
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                +  + + L  KM    + P+    + +++   K ++
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM 384



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 101 IQAYSC--LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           + A SC  ++  L K GR+ +   ++  + R  +  +VVT+ ++I+GL   G+  KA D+
Sbjct: 192 LSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDV 251

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             DM+    +P+VIT+ T+I G+ +  +  K   LL +M  K + P+    +I++D   +
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311

Query: 219 NEISLNSLPSFTVHERQ 235
           +E    +   F   +RQ
Sbjct: 312 DENVTAAKKVFEEMQRQ 328



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           IL++  CK  E   A+ L  EM     KG + ++V +N L  G     ++E A +L +EM
Sbjct: 479 ILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEM 538

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYI 82
              G+  +  TY I  D + + G+I
Sbjct: 539 LEKGLIPNRTTYDILRDEMMEKGFI 563


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 113/251 (45%), Gaps = 34/251 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            ++  CK+ ++  A+ +   M     KPDVV  NTL  GL +  +++ A ++ DEM+R G
Sbjct: 60  FVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSG 119

Query: 62  VAA--------------------------------DTRTYTIFIDGLCKNGYIVESVELF 89
            AA                                DT+TY   I G CK+G I  +    
Sbjct: 120 FAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFL 179

Query: 90  RTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHGLY 147
             ++    C  D   YS LI+GLCKS  L  A EL   +  R    A VV ++ ++ G  
Sbjct: 180 EEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYC 239

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
               +D+A +L   M E+  AP+V+T+ T+I G  R  +  K   LL KM  +   PD  
Sbjct: 240 KAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVV 299

Query: 208 IVSIVVDLLAK 218
             +++V  L K
Sbjct: 300 TYTVLVTGLCK 310



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 118/251 (47%), Gaps = 34/251 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE------------------ 43
           LI G CK   ++ A  +  EM   G   ++V +NTL  GL                    
Sbjct: 95  LIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTP 154

Query: 44  --------IH------QVERAFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
                   IH      +++RA+   +EM QR G + DT TY+I I+GLCK+  + ++ EL
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADEL 214

Query: 89  FRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
            + +   K C   + A++ L+DG CK+  L+ A EL  S+       DVVTYS +I GL 
Sbjct: 215 LQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLC 274

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G +DK   L   M      P+V+T+  L+ G  +  +  +   L+ +M E    P+A 
Sbjct: 275 RCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAV 334

Query: 208 IVSIVVDLLAK 218
             S+V D L K
Sbjct: 335 TYSLVFDGLCK 345



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           +I+G+CK+ EI+ A     EM  + G  PD   ++ L  GL +   + +A +L  EM  R
Sbjct: 162 IIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGR 221

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
               A    +   +DG CK   +  + EL  ++    C  D+  YS +IDGLC+ G ++ 
Sbjct: 222 KDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDK 281

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
              L   +       DVVTY++++ GL   G+M +A  L   M E+   PN +T+  +  
Sbjct: 282 GFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFD 341

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G  +I++     +LL  +++K  + D
Sbjct: 342 GLCKIDKLDMANDLLTSIRDKGRVTD 367



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 46  QVERAFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           +++ A  L  EM Q+ G+A     Y  F+  LCK+G + E++E+ + ++   C+ D+  +
Sbjct: 33  ELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTF 92

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI GLCK+GRL+ A ++   + R    A++VTY+ +I+GL + G+  +A    L M+ 
Sbjct: 93  NTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEA---VLVMQG 149

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNE 220
               P+  T+  +IHGF +  E  +    L +MK++    PD    SI+++ L K+ 
Sbjct: 150 MTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSS 206



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILING CK+  +  A  L  EM+  K     VV  NTL  G  +   ++RA +L   M  
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE 256

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G A D  TY+  IDGLC+ G + +   L   +    C+ D+  Y+ L+ GLCK+G++  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           A  L   +       + VTYS++  GL    ++D A+DL   + +     +V+ F TL+
Sbjct: 317 ACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 104/253 (41%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L+  +C   E++ A++L  EM  + G+ P   ++N     L +  +V  A ++   M+ 
Sbjct: 23  VLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD 82

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVE--------------------------------SVE 87
                D  T+   I GLCK G + E                                S E
Sbjct: 83  GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGE 142

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADVVTYSIMIHGL 146
               ++ +    D Q Y+ +I G CKSG ++ A      +  R     D  TYSI+I+GL
Sbjct: 143 AVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGL 202

Query: 147 YNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                + KA +L  +M        +V+ F TL+ G+ +  +  +  ELL  M E    PD
Sbjct: 203 CKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPD 262

Query: 206 ASIVSIVVDLLAK 218
               S ++D L +
Sbjct: 263 VVTYSTIIDGLCR 275


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C    I+ AL L+  ML +G+ P+ +  +TL  GLF+  + E+A  L+ E    G
Sbjct: 435 LLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  T+   I+GLCK G + E+ EL   ++ L+C  D   Y  L DG CK G+L  A 
Sbjct: 495 LAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTAT 554

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +        V  ++  I G +   Q  K +D+  +M    ++PN++T+G LI G+
Sbjct: 555 HLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGW 614

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   L  +M    + P+  I S ++    K
Sbjct: 615 CKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYK 651



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 108/208 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK+  I  A +L+  + +K   PD   +++L  G      ++ AF L D M   
Sbjct: 705 VIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSA 764

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I GLCK+G +  +V LF  L+      +   Y+ LID  CK G+   A
Sbjct: 765 GLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEA 824

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +   V+TYSI+I+GL   G M++A  L   M EN V PN IT+ TLIHG
Sbjct: 825 FKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHG 884

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
           +I+     ++ +L  +M  + ++P   I
Sbjct: 885 YIKSGNMEEISKLYDEMHIRGLLPTNWI 912



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++INGYC+   ++ A  + +EM   GI  ++ ++NT+  GL ++ ++E   K+  EM+  
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDV 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  +Y   IDG C+ G + ++ E+ R +           Y+ L+ G C    ++ A
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 121 LEL-FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L L F  L RGV   + ++ S ++ GL+  G+ ++A +L+ +     +A NVITF T+I+
Sbjct: 449 LRLWFLMLKRGV-APNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVIN 507

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +I   ++  ELL +MKE    PD+     + D   K
Sbjct: 508 GLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCK 546



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 114/238 (47%), Gaps = 26/238 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK   +  A NLY EM++ G+ P+V I + L    ++  +V+ A  +  ++    
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNID 669

Query: 62  VAADTRTYTIFID--------------------------GLCKNGYIVESVELFRTLRIL 95
           +       TI ID                          GLCK+G I ++  LF +LR  
Sbjct: 670 MIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNK 729

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           +   D   YS LI G   SG ++ A  L   +    L  +++TY+ +I+GL   G++ +A
Sbjct: 730 RFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRA 789

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +LF  ++   ++PN IT+ TLI  + +  + ++  +L  KM E+ + P     SI++
Sbjct: 790 VNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILI 847



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+   +  A  +   M+  G+    + +NTL  G   +H ++ A +L+  M + G
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  + +  +DGL K G   +++ L++         ++  ++ +I+GLCK GR+  A 
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAE 519

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       D +TY  +  G    GQ+  A  L   ME    AP+V  F + I G 
Sbjct: 520 ELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGH 579

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  KV ++  +M  + + P+
Sbjct: 580 FIAKQWHKVNDIHSEMSARGLSPN 603



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  +    ++  ALN++  M   G +P +   N L   L +      A  ++ +M+  
Sbjct: 153 LLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIA 212

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T  I     C++G + ++VE    +  +  E+++ AY  ++D  C  G  E A
Sbjct: 213 GVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDA 272

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIH 179
             +  SL R  L  +VVTY++++ G   DG+M++A  +  +M+E   +  + + +G +I+
Sbjct: 273 RRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMIN 332

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G+ +         + ++M++  +  +  + + +++ L K
Sbjct: 333 GYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 2   LINGYCKNKEIEGALNLY------SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD 55
           LI+GYCK     GA N+Y       EM+  GI P  V    L  G  +      A ++F+
Sbjct: 232 LIDGYCKKG---GAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFE 288

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM++ G+AA   TY   I GLC  G + E V+L   +  L    +   + C++ G CK G
Sbjct: 289 EMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKG 348

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            +  A +    +    +  DVV Y+I+I G    G+M+ A  +   M +  ++PNV T+ 
Sbjct: 349 MMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYN 408

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
            LI GF R  +      LL +MKEK +  D    ++++  L  K E+
Sbjct: 409 CLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEV 455



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 107/205 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCKN     A+ ++ EM  +GI   VV +N+L  GL    +VE   KL +EM+  
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL 328

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  T+   + G CK G + ++ +    +     E D+  Y+ LIDG  + G++E A
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDA 388

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +  ++ +  +  +V TY+ +I G    G    A  L  +M+E  +  +V+T+  LI  
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                E  K ++LL +M E  + P+
Sbjct: 449 LCCKGEVRKAVKLLDEMSEVGLEPN 473



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 9/219 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G    K ++ A   +   L + + PD+   NT+  GL  I Q+ +A  +  +++  G
Sbjct: 162 LLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG 221

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQ----AYSCLIDGLCKSG 115
           +A    TY   IDG CK G    +  ++    +LK   E  I      +  LI+G CK+ 
Sbjct: 222 LAPSVATYNSLIDGYCKKG---GAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNS 278

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
               A+ +F  + +  + A VVTY+ +I GL ++G++++   L  +ME+  ++PN ITFG
Sbjct: 279 NTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFG 338

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++ GF +    +   + +  M E+NV PD  I +I++D
Sbjct: 339 CVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILID 377



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 96/182 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+GY +  ++E A+ +   M  KGI P+V  +N L  G         A  L DEM+  
Sbjct: 374 ILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ AD  TY + I  LC  G + ++V+L   +  +  E +   Y+ +I G C  G ++ A
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSA 493

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +    A+VVTY++ I      G+MD+A+DL  +M +  + PN IT+ T+  G
Sbjct: 494 YEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEG 553

Query: 181 FI 182
            +
Sbjct: 554 MM 555



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 103/205 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+CK   +  A +    M  + ++PDVVI+  L  G   + ++E A  + + M + G
Sbjct: 340 VLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKG 399

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY   I G  ++G    +  L   ++    E D+  Y+ LI  LC  G +  A+
Sbjct: 400 ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAV 459

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  + +TY+ +I G  + G +  A+++   ME+     NV+T+   I  F
Sbjct: 460 KLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYF 519

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +I +  +  +LL++M +K ++P+ 
Sbjct: 520 CQIGKMDEANDLLNEMLDKCLVPNG 544



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+ ++ +   A  L  EM  KGI+ DVV +N L   L    +V +A KL DEM   G
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQAYSCLIDGLCKSGRLEI 119
           +  +  TY   I G C  G I  + E+ RT R+ KC    ++  Y+  I   C+ G+++ 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEI-RT-RMEKCRKRANVVTYNVFIKYFCQIGKMDE 527

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           A +L + +    LV + +TY  +  G+   G
Sbjct: 528 ANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+ GL  + R+++A + F S  R  +  D+ T++ +I GL   GQ+ KA D+  D++   
Sbjct: 162 LLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG 221

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
           +AP+V T+ +LI G+ +      +     LL +M E  + P A    ++++   KN  + 
Sbjct: 222 LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTA 281

Query: 224 NSLPSFTVHERQ 235
            ++  F   ++Q
Sbjct: 282 AAVRVFEEMKQQ 293


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K   ++ A  LY EM+   + P+ V +N++  GL    ++  A K FD M   G
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I G CK   + E ++LF+ +       DI  Y+ LI G C+ G+L +AL
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    +  D++T+ I++HGL  +G+++ A   F DM E+     ++ +  +IHG 
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + ++  K  EL  ++  + V PDA   +I++  L KN
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKN 469



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 103/202 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C +  +  A   +  M SKG  P+VV +NTL  G  +   V+   KLF  M  +G
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TY   I G C+ G +  ++++F  +   +   DI  +  L+ GLC +G +E AL
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  +        +V Y+IMIHGL    +++KA +LF  +    V P+  T+  +I G 
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
            +     +  EL+ +MKE+ ++
Sbjct: 467 CKNGPRREADELIRRMKEEGII 488



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN E+  AL L +EM  KG+  DVV +NTL  GL    +   A ++  +M +  
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  ID   K G + E+ EL++ +     + +   Y+ +I+GLC  GRL  A 
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  +       +VVTY+ +I G      +D+   LF  M       ++ T+ TLIHG+
Sbjct: 302 KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ +    +++   M  + V PD
Sbjct: 362 CQVGKLRVALDIFCWMVSRRVTPD 385



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 105/196 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C    I  A +L   M+  G +P+VV++NTL  GL +  ++  A +L +EM++ G
Sbjct: 147 LLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKG 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   + GLC +G   ++  + R +       D+  ++ LID   K G L+ A 
Sbjct: 207 LGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQ 266

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  + +  +  + VTY+ +I+GL   G++  A   F  M      PNV+T+ TLI GF
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326

Query: 182 IRINEPSKVIELLHKM 197
            +     + ++L  +M
Sbjct: 327 CKFRMVDEGMKLFQRM 342



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+   +  AL++  +M+  G +P +V   +L  G   ++++  AF L   M + 
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   Y   IDGLCKNG +  ++EL   +       D+  Y+ L+ GLC SGR   A
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  +  DVVT++ +I      G +D+A +L+ +M +++V PN +T+ ++I+G
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                R+ +  K  +L   M  K   P+    + ++    K
Sbjct: 291 LCMHGRLYDAKKTFDL---MASKGCFPNVVTYNTLISGFCK 328



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 1/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L  G+  +   E A  L+ EM+     P +V    L      + + E       +M+  G
Sbjct: 42  LRTGFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYG 101

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  ++TI I   C+   +  ++ +   +  L  E  I  +  L+ G C   R+  A 
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     +VV Y+ +I GL  +G+++ A +L  +ME+  +  +V+T+ TL+ G 
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
                 S    +L  M ++++ PD    + ++D+  K + +L+          Q  VD +
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVK-QGNLDEAQELYKEMIQSSVDPN 280

Query: 242 NV 243
           NV
Sbjct: 281 NV 282



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 56/93 (60%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C N EIE AL  + +M        +V +N +  GL +  +VE+A++LF  +  +
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           GV  D RTYTI I GLCKNG   E+ EL R ++
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMK 483



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK  ++E A  L+  +  +G+KPD   +  + +GL +      A +L   M+ +
Sbjct: 426 IMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEE 485

Query: 61  GV 62
           G+
Sbjct: 486 GI 487


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  E+  A +++ E+   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+G +++A
Sbjct: 201 GIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E +  + R     D++TY+ +I+GL  +G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     +   +M ++N+  D    + ++  L +   S+ +
Sbjct: 321 SCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGA 365



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 1/225 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M   GI+PDV  ++ L  GL +  ++  A +LFDEM  +G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G I  ++E ++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A      M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEISLNS 225
            R  +     ++L +M    + PD    ++++ +   K ++ + S
Sbjct: 357 CREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGS 401



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  ++  A  L+ EM+  G+ P+ V   TL  G  +   ++ A + + EM R 
Sbjct: 211 VLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    + +  +  D V Y+ +I GL  +GQ   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 FKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVKMGSKLLKEMQRDGHVP 414



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   I+ A+  Y EML +G  PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + +  + +      LD  AY+ LI GLC+ G+   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  D  TY+++I+     G +     L  +M+ +   P V+T
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
             ++   +  +  + E+   G  A    + I +   CK G +  +  +F  +        
Sbjct: 111 FMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  + G L+    L  ++    +  DV TYS++I+GL  + +M+ A++LF 
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +M  N + PN +TF TLI G  +       +E   +M  +   PD    + ++  L K
Sbjct: 231 EMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCK 288


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 1/213 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK  +++ A +    M +KGI+P+VV +N + +    +  ++ A  +F EM   G+  + 
Sbjct: 460 CKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNN 519

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY+I IDG  KN     + E+   +     E +   Y+ +I+GLCK G+   A E+  +
Sbjct: 520 FTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQN 579

Query: 127 LPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
           L +    +    +Y+ +I G + +G  D A + + +M EN ++PNV+TF +LI+GF + N
Sbjct: 580 LIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSN 639

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +E++H+MK K++  D      ++D   K
Sbjct: 640 RMDLALEMIHEMKSKDLKLDVPAYGALIDGFCK 672



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 110/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  + + A+  Y EM   GI P+VV   +L  G  + ++++ A ++  EM+   
Sbjct: 596 IIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKD 655

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   IDG CK   +  +  LF  L  L    ++  Y+ LI G    G+++ A+
Sbjct: 656 LKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAI 715

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +    +  D+ TY+ MI GL  DG +  A DL+ ++    + P+ I +  L++G 
Sbjct: 716 DLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGL 775

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +  +  +  ++L +MK+K+  P+  I S V+
Sbjct: 776 SKKGQFVRASKMLEEMKKKDATPNVLIYSTVI 807



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ KN++ + A  + ++M++   + + VI+NT+  GL ++ Q  +A ++   + ++
Sbjct: 524 ILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKE 583

Query: 61  G-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
              +    +Y   IDG  K G    +VE +R +       ++  ++ LI+G CKS R+++
Sbjct: 584 KRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDL 643

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ALE+ H +    L  DV  Y  +I G      M  A+ LF ++ E  + PNV  +  LI 
Sbjct: 644 ALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLIS 703

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           GF  + +    I+L  KM    +  D    + ++D L K+
Sbjct: 704 GFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKD 743



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 113/212 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK+  ++ AL +  EM SK +K DV  +  L  G  + + ++ A+ LF E+   G
Sbjct: 631 LINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELG 690

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   I G    G +  +++L++ +       D+  Y+ +IDGL K G L +A 
Sbjct: 691 LMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILAS 750

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  L    +V D + Y ++++GL   GQ  +A  +  +M++    PNV+ + T+I G 
Sbjct: 751 DLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGH 810

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R    ++   +  +M EK ++ D +I +++V
Sbjct: 811 HREGNLNEAFRVHDEMLEKGLVHDDTIFNLLV 842



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 105/192 (54%), Gaps = 2/192 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +++ A  L+SE+L  G+ P+V ++N L  G   + +++ A  L+ +M  DG
Sbjct: 666 LIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDG 725

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TYT  IDGL K+G ++ + +L+  L  L    D   Y  L++GL K G+   A 
Sbjct: 726 ISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRAS 785

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +     +V+ YS +I G + +G +++A  +  +M E  +  +   F  L+ G 
Sbjct: 786 KMLEEMKKKDATPNVLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHDDTIFNLLVSG- 844

Query: 182 IRINEPSKVIEL 193
            R+ +P    ++
Sbjct: 845 -RVEKPPAAAKI 855



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 110/205 (53%), Gaps = 1/205 (0%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
            +C+ K ++ A +++SEML KG++P+   ++ L  G F+    + A+++ ++M      A
Sbjct: 493 AHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEA 552

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +   Y   I+GLCK G   ++ E+ + L +  +  +   +Y+ +IDG  K G  + A+E 
Sbjct: 553 NEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEA 612

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +    +  +VVT++ +I+G     +MD A ++  +M+   +  +V  +G LI GF +
Sbjct: 613 YREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCK 672

Query: 184 INEPSKVIELLHKMKEKNVMPDASI 208
            N+      L  ++ E  +MP+ S+
Sbjct: 673 KNDMKTAYTLFSELLELGLMPNVSV 697



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N Y +N+ ++ A++ ++ M+ + + P V   N +   L   + ++ A +++++M   G
Sbjct: 175 LLNAYIRNRRMDYAVDCFNLMVDRNVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIG 234

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  T  + +    +     E++++FR +     E D   +S  +   CK   L +AL
Sbjct: 235 VAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMAL 294

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L   +  +G + A   TY+ +I     +G M++A  +  +M    +  +VI   +LI G
Sbjct: 295 DLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITG 354

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F   NE  K ++  ++M+E+ + PD  + S++++   KN
Sbjct: 355 FCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKN 393



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 2/201 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I  +CKN E+E A+ +Y  M S GI P  V+ + +  G  +    E A ++F++    
Sbjct: 385 VMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFNDSFET 444

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A       IF+  LCK G +  +    R +     E ++  Y+ ++   C+   +++A
Sbjct: 445 WIAHGFMCNKIFL-LLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLA 503

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L  +  TYSI+I G + +     A ++   M  +    N + + T+I+G
Sbjct: 504 RSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIING 563

Query: 181 FIRINEPSKVIELLHKM-KEK 200
             ++ + SK  E+L  + KEK
Sbjct: 564 LCKVGQTSKAKEMLQNLIKEK 584



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           +L+    + ++ E A+ ++  ++S+G +PD ++ +       ++  +  A  L  EM ++
Sbjct: 244 LLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREK 303

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV A   TYT  I    K G + E+V++   +      + + A + LI G C    L  
Sbjct: 304 GGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGK 363

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+ F+ +    L  D V +S+MI     + +M+KA +++  M+   +AP+ +    +I 
Sbjct: 364 ALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQ 423

Query: 180 GFIRINEPSKVIELLH 195
           G ++   P   +E+ +
Sbjct: 424 GCLKAESPEAALEIFN 439



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 34/245 (13%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   +E A+ +  EM+  GI   V+   +L  G    +++ +A   F+ M+ +G+A D  
Sbjct: 322 KEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKV 381

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLR-----------------ILKCELDIQAYSCLIDG 110
            +++ I+  CKN  + ++VE+++ ++                  LK E    A     D 
Sbjct: 382 MFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFNDS 441

Query: 111 -----------------LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
                            LCK G+++ A      +    +  +VV Y+ M+        MD
Sbjct: 442 FETWIAHGFMCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMD 501

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            A  +F +M E  + PN  T+  LI GF +  +     E++++M   N   +  I + ++
Sbjct: 502 LARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTII 561

Query: 214 DLLAK 218
           + L K
Sbjct: 562 NGLCK 566



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 1/199 (0%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           I+ A  +Y++M+  G+  D V    L        + E A K+F  +   G   D   +++
Sbjct: 220 IDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSL 279

Query: 72  FIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
            +   CK   +V +++L R +R         + Y+ +I    K G +E A+++   +   
Sbjct: 280 AVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGF 339

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +   V+  + +I G  N  ++ KA D F  MEE  +AP+ + F  +I  F +  E  K 
Sbjct: 340 GIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKA 399

Query: 191 IELLHKMKEKNVMPDASIV 209
           +E+  +MK   + P + +V
Sbjct: 400 VEIYKRMKSVGIAPSSVLV 418



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 35/261 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           + +   CK K++  AL+L  EM  KG  P     + ++ +   +   +E A K+ DEM  
Sbjct: 279 LAVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVG 338

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+       T  I G C    + ++++ F  +       D   +S +I+  CK+  +E 
Sbjct: 339 FGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEK 398

Query: 120 ALELF---------------HSLPRGVLVADVVTYSIMI----------HG--------- 145
           A+E++               H + +G L A+    ++ I          HG         
Sbjct: 399 AVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFNDSFETWIAHGFMCNKIFLL 458

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++D A      ME   + PNV+ +  ++    R+        +  +M EK + P+
Sbjct: 459 LCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPN 518

Query: 206 ASIVSIVVDLLAKNEISLNSL 226
               SI++D   KN+   N+ 
Sbjct: 519 NFTYSILIDGFFKNQDEQNAW 539



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  K  +   A  +  EM  K   P+V+I++T+  G      +  AF++ DEM   
Sbjct: 770 VLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGHHREGNLNEAFRVHDEMLEK 829

Query: 61  GVAADTRTYTIFIDG 75
           G+  D   + + + G
Sbjct: 830 GLVHDDTIFNLLVSG 844


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K ++ E A+ L+ +M+ KG +P++V+++ L  GL    +++ A ++  EM   G
Sbjct: 353 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 412

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  I G  K G   +++ +++ +    C  +   YS LI GLC+ G+L  A+
Sbjct: 413 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 472

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLI 178
            ++ H L RG L  DVV YS MIHGL N G ++    LF +M  +E+   P+V+T+  L+
Sbjct: 473 MMWTHMLGRG-LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILL 531

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
               + N  S  I+LL+ M ++   PD    +I ++ L
Sbjct: 532 RALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  ++     L   M  KG  P+ V +NT+  GL    ++++A  L D M   
Sbjct: 247 VLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   I+GL K G  V+ V L  +L       +  AYS LI GL K  + E A
Sbjct: 307 KCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEA 366

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L+  +       ++V YS +I GL  +G++D+A ++  +M      PN  T+ +LI G
Sbjct: 367 MGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKG 426

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +     K I +  +M + N +P+    S+++  L ++
Sbjct: 427 FFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCED 465



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK   ++ A+ ++ EM  +  +PDV  + TL  GL +  +++ A  L DEMQ +
Sbjct: 177 LVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIE 236

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    + T+ + I+GLCK G +V   +L   + +  C  +   Y+ +I+GLC  G+L+ A
Sbjct: 237 GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 296

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +     V + VTY  +I+GL   G+      L   +EE     N   + TLI G
Sbjct: 297 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 356

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  + + L  KM EK   P+  + S ++D L +
Sbjct: 357 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR 394



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING  K       ++L S +  +G   +   ++TL  GLF+  + E A  L+ +M   G
Sbjct: 318 LINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG 377

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  IDGLC+ G + E+ E+   +    C  +   YS LI G  K+G  + A+
Sbjct: 378 CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAI 437

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  + +   V + + YS++IHGL  DG++ +A  ++  M    + P+V+ + ++IHG 
Sbjct: 438 RVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 497

Query: 182 IRINEPSKVIELLHKM--KEKNVMPDASIVSIVVDLLAK-NEIS 222
                    ++L ++M  +E +  PD    +I++  L K N IS
Sbjct: 498 CNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSIS 541



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 101/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   I+ A+ L  EM  +G  P  V  N L  GL +   + R  KL D M   G
Sbjct: 213 LMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG 272

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I+GLC  G + ++V L   +   KC  +   Y  LI+GL K GR    +
Sbjct: 273 CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGV 332

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  SL      A+   YS +I GL+ + + ++A  L+  M E    PN++ +  LI G 
Sbjct: 333 HLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGL 392

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R  +  +  E+L +M  K   P+A   S ++
Sbjct: 393 CREGKLDEAKEILCEMVNKGCTPNAFTYSSLI 424



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 100/196 (51%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I P+V+  N +   + ++  V+RA ++F EM       D  TY   +DGLCK   I E+V
Sbjct: 168 ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAV 227

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++I  C      ++ LI+GLCK G +    +L  ++     V + VTY+ +I+GL
Sbjct: 228 LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 287

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++DKA  L   M  +   PN +T+GTLI+G ++       + LL  ++E+    + 
Sbjct: 288 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 347

Query: 207 SIVSIVVDLLAKNEIS 222
              S ++  L K E S
Sbjct: 348 YAYSTLISGLFKEEKS 363



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 7/197 (3%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           +V+I   LF    E ++     K         ++ +  ++ + I  +CK G +  ++E+F
Sbjct: 143 NVIIQEGLFHRALEFYECGVGGK-------TNISPNVLSFNLVIKAMCKLGLVDRAIEVF 195

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           R + I KCE D+  Y  L+DGLCK  R++ A+ L   +         VT++++I+GL   
Sbjct: 196 REMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKK 255

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G M +   L  +M      PN +T+ T+I+G     +  K + LL +M     +P+    
Sbjct: 256 GDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTY 315

Query: 210 SIVVDLLAKNEISLNSL 226
             +++ L K   S++ +
Sbjct: 316 GTLINGLVKQGRSVDGV 332



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           +LI+G C++ ++  A+ +++ ML +G++PDVV ++++  GL     VE   KLF+EM  Q
Sbjct: 457 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 516

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
                 D  TY I +  LCK   I  +++L  ++    C  D+   +  ++ L
Sbjct: 517 ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  E+  A +++ E+   G++P VV  NTL  G   +  ++  F+L   M   
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+G +++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E +  + R     D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 METYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +    +    +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDA 365



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  ++  A  L+ EM+  G+ P+ V   TL  G  +   ++ A + + EM R 
Sbjct: 211 VLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 GFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     + +  +  D V Y+ +I GL  +GQ   A  +  +M    + P+  T+  +I+ 
Sbjct: 331 LYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVKTGSKLLKEMQRDGHVP 414



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   I+ A+  Y EML +G  PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEI 119
           +  D  TYT  IDG CK G +     L+   R++K    LD  AY+ LI GLC+ G+   
Sbjct: 307 LKPDKITYTTLIDGSCKEGDL--ETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVD 364

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           A ++   +    L  D  TY+++I+     G +     L  +M+ +   P V+T
Sbjct: 365 AEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S M + G++PDV  ++ L  GL +  ++  A +LF EM  +G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G I  ++E ++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A      M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  +     ++L +M    + PD    +++++   K 
Sbjct: 357 CREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 9/194 (4%)

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           +  + E+   G  A    + I +   CK G +  +  +F  +        + +++ L++G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNG 180

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             + G L+    L  ++    +  DV TYS++I+GL  + +M+ A++LF +M  N + PN
Sbjct: 181 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPN 240

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
            +TF TLI G  +       +E   +M  +   P         DL+  N +         
Sbjct: 241 GVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSP---------DLITYNTLIYGLCKKGD 291

Query: 231 VHERQEEVDESNVK 244
           + + Q+ +DE ++K
Sbjct: 292 LKQAQDLIDEMSMK 305


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 117/216 (54%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING C+ + ++GA+ L S+M S G KPD+V +NTL  GL    +   A +L D M ++G
Sbjct: 188 IINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNG 247

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I  LC+ G +V+++E+F+ +    C  +   YS +I GL K+ +L+ AL
Sbjct: 248 CLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQAL 307

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+ +       D + Y ++   L +D  +++A      ++++ ++P+ + +  ++ G 
Sbjct: 308 ELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGL 366

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            R  +    I+++  M     MPD     I+++ LA
Sbjct: 367 CRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLA 402



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C   +++ AL L   + S G KP  V +NT+  GL    +   A +L  EM R+
Sbjct: 82  VLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRE 141

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T+ + I  LC+ G + ++++L   +    C  +I  Y+ +I+GLC+   ++ A
Sbjct: 142 NCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGA 201

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       D+VTY+ ++ GL +  +   A +L  +M +N   P+ +TF TLI  
Sbjct: 202 MGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGF 261

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       IE+  +M +K   P++   S ++  LAK
Sbjct: 262 LCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 299



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C+  ++  AL++  +ML +G  PDVV +N L     +     +A +L D M+ +G
Sbjct: 13  LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 72

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY + +DG+C  G + +++EL R L    C+     Y+ ++ GLC + R   A 
Sbjct: 73  CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 132

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R     +  T++++I+ L   G + +A  L   M ++    N++T+  +I+G 
Sbjct: 133 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 192

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                    + LL KMK     PD
Sbjct: 193 CEQRNVDGAMGLLSKMKSYGCKPD 216



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  +    A  L +EML +   P+    N +   L     +++A +L ++M + G
Sbjct: 118 VLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG 177

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  TY   I+GLC+   +  ++ L   ++   C+ DI  Y+ L+ GLC + R   A 
Sbjct: 178 CTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAE 237

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  ++ +   + D VT++ +I  L   G M  A ++F  M +    PN IT+ T+I G 
Sbjct: 238 ELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGL 297

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  + +EL ++M  K   PD
Sbjct: 298 AKATKLDQALELFNEMGHKGFNPD 321



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 83/173 (47%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           ++P+   +N L   L E  QV  A  + D+M   G A D  TY I ++  CK     +++
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           EL   +R   C  +   Y+ L+DG+C  G ++ ALEL  +LP        V Y+ ++ GL
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
            +  +   A +L  +M      PN  TF  +I+   R     + I+LL KM +
Sbjct: 123 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSK 175



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+   +  A+ ++ +M  KG  P+ + ++T+  GL +  ++++A +LF+EM   G
Sbjct: 258 LIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 317

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + Y +  + L  +  I E+++  R L+          Y+ ++ GLC++G+ E A+
Sbjct: 318 FNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAI 376

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           ++   +     + D +TY I+I GL  +G +++A +L + +
Sbjct: 377 DIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 74/157 (47%)

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I  LC+ G + +++ +   +    C  D+  Y+ L++  CK      A+
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       + VTY++++ G+  +G +D A +L  ++  +   P+ + + T++ G 
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     EL+ +M  +N  P+ +  ++V+  L +
Sbjct: 123 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCR 159



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           IE A+    ++   GI P  V++N + +GL    + E A  +   M   G   D  TY I
Sbjct: 337 IEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVI 396

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
            I+GL   GY+ E+ EL   L    C  D+     L++ L KS
Sbjct: 397 LIEGLAYEGYLNEARELLIKL----CSRDV-----LVNSLIKS 430



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
            Y+ LI  LC+ G++  AL +    L RG    DVVTY+I++          +A +L   
Sbjct: 9   TYNPLIHTLCERGQVRDALSVLDDMLCRGC-APDVVTYNILLEATCKGRGYRQAMELIDL 67

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           M      PN +T+  L+ G     +    +ELL  +      P     + V+  L   E
Sbjct: 68  MRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAE 126


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +N EI+     Y +MLSKG++PD+V++NTL  G  +   +  A  + D M R G
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG C+ G +  ++E+ + +     ELD   +S L+ G+CK GR+  A 
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAE 470

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + R  +  D VTY++M+      G       L  +M+ +   P+V+T+  L++G 
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGL 530

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ +      LL  M    V+PD
Sbjct: 531 CKLGQMKNADMLLDAMLNIGVVPD 554



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 2/189 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+CKN ++  A N+   M+ +G++PD + + TL  G      VE A ++  EM ++G
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   ++  + G+CK G ++++    R +     + D   Y+ ++D  CK G  +   
Sbjct: 446 IELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGF 505

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHG 180
           +L   +     V  VVTY+++++GL   GQM  A D+ LD   N  V P+ IT+ TL+ G
Sbjct: 506 KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA-DMLLDAMLNIGVVPDDITYNTLLEG 564

Query: 181 FIRINEPSK 189
             R    SK
Sbjct: 565 HHRHANSSK 573



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK  +++GA  L+ EM  +G+ P+ VI  TL  G     +++   + + +M   G
Sbjct: 316 LINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   ++G CKNG +V +  +   +       D   Y+ LIDG C+ G +E AL
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETAL 435

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  +  D V +S ++ G+  +G++  A     +M    + P+ +T+  ++  F
Sbjct: 436 EIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAF 495

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +     +LL +M+    +P     +++++ L K
Sbjct: 496 CKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCK 532



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   ++    L  +M     +PDV  ++ L   L + ++++ A  LFDEM + G
Sbjct: 281 LINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRG 340

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  I G  +NG I    E ++ +     + DI  Y+ L++G CK+G L  A 
Sbjct: 341 LIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAAR 400

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + R  L  D +TY+ +I G    G ++ A ++  +M++N +  + + F  L+ G 
Sbjct: 401 NIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGM 460

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +          L +M    + PD    ++++D   K
Sbjct: 461 CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCK 497



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 2/199 (1%)

Query: 23  LSKGIKPDVVIHN--TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
           LS+  + DV I     L   + +++     +  + E+   G   +   + I ++  CK G
Sbjct: 195 LSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEG 254

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
            I ++ ++F  +     +  + +++ LI+G CK G L+    L H + +     DV TYS
Sbjct: 255 NISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYS 314

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I+ L  + +MD AH LF +M +  + PN + F TLIHG  R  E   + E   KM  K
Sbjct: 315 ALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSK 374

Query: 201 NVMPDASIVSIVVDLLAKN 219
            + PD  + + +V+   KN
Sbjct: 375 GLQPDIVLYNTLVNGFCKN 393



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 104/213 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +CK   I  A  ++ E+  + ++P VV  NTL  G  ++  ++  F+L  +M++ 
Sbjct: 245 ILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKS 304

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY+  I+ LCK   +  +  LF  +       +   ++ LI G  ++G +++ 
Sbjct: 305 RTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLM 364

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E +  +    L  D+V Y+ +++G   +G +  A ++   M    + P+ IT+ TLI G
Sbjct: 365 KESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDG 424

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R  +    +E+  +M +  +  D    S +V
Sbjct: 425 FCRGGDVETALEIRKEMDQNGIELDRVGFSALV 457



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 95/197 (48%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            Y E+L  G   +V + N L     +   +  A K+FDE+ +  +     ++   I+G C
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYC 286

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + E   L   +   +   D+  YS LI+ LCK  +++ A  LF  + +  L+ + V
Sbjct: 287 KVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDV 346

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            ++ +IHG   +G++D   + +  M    + P+++ + TL++GF +  +      ++  M
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406

Query: 198 KEKNVMPDASIVSIVVD 214
             + + PD    + ++D
Sbjct: 407 IRRGLRPDKITYTTLID 423



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 69/139 (49%)

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           G+I ++++ FR  R  + ++ I+    L+D + K          +  +       +V  +
Sbjct: 184 GFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVF 243

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +I+++    +G +  A  +F ++ + ++ P V++F TLI+G+ ++    +   L H+M++
Sbjct: 244 NILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEK 303

Query: 200 KNVMPDASIVSIVVDLLAK 218
               PD    S +++ L K
Sbjct: 304 SRTRPDVFTYSALINALCK 322



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++ +CK  + +    L  EM S G  P VV +N L  GL ++ Q++ A  L D M   
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549

Query: 61  GVAADTRTYTIFIDG 75
           GV  D  TY   ++G
Sbjct: 550 GVVPDDITYNTLLEG 564


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  ++  A  L  EM++K I P+ +  N L  G      V  A K+F+EMQR G
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I+GLC NG + E++ L   +  +  + ++  Y+ LI+G CK   L+ A 
Sbjct: 330 LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAR 389

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  L  +V+T++ +I      G+MD A  L   M +  V PNV T+  LI GF
Sbjct: 390 EMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGF 449

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     +  +L  +M+   +  D    +I+VD L K
Sbjct: 450 CREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 112/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK  + + A ++  +M + G  P V+ +NT+  G  +  ++ +A  L  EM   
Sbjct: 234 VVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK 293

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+ I IDG C++  +  + ++F  ++    + ++  Y+ LI+GLC +G+L+ A
Sbjct: 294 RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +    L  +VVTY+ +I+G      + +A ++  D+ +  +APNVITF TLI  
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +         L   M +  V P+ S  + ++
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 121/235 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+C+++ +  A  ++ EM  +G++P+VV +N+L  GL    +++ A  L D+M   
Sbjct: 304 ILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGM 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+G CK   + E+ E+   +       ++  ++ LID   K+GR++ A
Sbjct: 364 GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDA 423

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  +V TY+ +I G   +G + +A  L  +ME N +  +++T+  L+  
Sbjct: 424 FLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDA 483

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +  E  K + LL +M E  + P     + ++D   +   S  +L   T+ E++
Sbjct: 484 LCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKK 538



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK K ++ A  +  ++  +G+ P+V+  NTL     +  +++ AF L   M   G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I G C+ G + E+ +L + +     + D+  Y+ L+D LCK G    A+
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAV 494

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L    +TY+ +I G + +G    A ++   ME+     N++T+  LI GF
Sbjct: 495 RLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGF 554

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               +  +   LL++M EK ++P+ +   I+ D
Sbjct: 555 CNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 587



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 109/202 (53%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++Y EM+ + I  +VV  + +  GL ++ + ++A  + ++M+  G +    TY   IDG 
Sbjct: 215 SVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           CK G + ++  L + +   +   +   ++ LIDG C+   +  A ++F  + R  L  +V
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNV 334

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VTY+ +I+GL ++G++D+A  L   M    + PNV+T+  LI+GF +     +  E+L  
Sbjct: 335 VTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDD 394

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           + ++ + P+    + ++D   K
Sbjct: 395 IGKRGLAPNVITFNTLIDAYGK 416



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 107/221 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y KN E++ AL  +      G +   +  N + + L +  ++     ++ EM R 
Sbjct: 164 MLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRR 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T+ + I+GLCK G   ++ ++   ++       +  Y+ +IDG CK+G++  A
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    +  + +T++I+I G   D  +  A  +F +M+   + PNV+T+ +LI+G
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                +  + + L  KM    + P+    + +++   K ++
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM 384



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 101 IQAYSC--LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           + A SC  ++  L K GR+ +   ++  + R  +  +VVT+ ++I+GL   G+  KA D+
Sbjct: 192 LSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDV 251

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             DM+    +P+VIT+ T+I G+ +  +  K   LL +M  K + P+    +I++D   +
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311

Query: 219 NEISLNSLPSFTVHERQ 235
           +E    +   F   +RQ
Sbjct: 312 DENVTAAKKVFEEMQRQ 328



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK  E   A+ L  EM   G+ P  + +N L  G F       A  +   M++ 
Sbjct: 479 ILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKK 538

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G  A+  TY + I G C  G + E+  L   +
Sbjct: 539 GRRANIVTYNVLIKGFCNKGKLEEANRLLNEM 570



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY +      ALN+ + M  KG + ++V +N L  G     ++E A +L +EM   G
Sbjct: 515 LIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG 574

Query: 62  VAADTRTYTIFIDGLCKNGYI 82
           +  +  TY I  D + + G+I
Sbjct: 575 LIPNRTTYDILRDEMMEKGFI 595


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 117/213 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK  E+  A +++  +   G++P VV  NTL  G  ++  ++  F+L + M+  
Sbjct: 141 ILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + E+  LF  +       +   ++ LIDG CK+GRL++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++++  +       DVVTY+ +I+GL   G + +A  L  +M    + P+ IT+ TLI G
Sbjct: 261 MDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  +     EL  +M ++++  D  + + ++
Sbjct: 321 SCKEGDLETAFELRERMIKESIRLDDVVYTALI 353



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 98/172 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+++Y +ML++G  PDVV +NTL  GL +   +++A  L DEM R G
Sbjct: 247 LIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + EL   +      LD   Y+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   + R  L  D  TY+++++     G + KA +L  +M+ N   P V+T
Sbjct: 367 KMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A  LF EM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  +++++R +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQAR 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  L  D +TY+ +I G   +G ++ A +L   M + ++  + + +  LI G 
Sbjct: 297 YLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 357 CQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKK 394



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A  L+ EML  G+ P+ V   TL  G  +  +++ A  ++ +M   
Sbjct: 211 VLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  TY   I GLCK G + ++  L   +     + D   Y+ LIDG CK G LE A
Sbjct: 271 GFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  +  D V Y+ +I GL  +G+   A  +  +M    + P+  T+  +++ 
Sbjct: 331 FELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +  K  ELL +M+    +P
Sbjct: 391 FCKKGDVKKASELLREMQRNGRVP 414



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 82/169 (48%)

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           +  + E+   G  A    + I +   CK G +  +  +F  +        + +++ L++G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             K G L+    L +++    +  DV TYS++I+GL  + +MD+A+ LF +M +N + PN
Sbjct: 181 YIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPN 240

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +TF TLI G  +       +++  +M  +   PD    + ++  L K 
Sbjct: 241 GVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKK 289



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           LI      K  + A  +++ +L +KG  + D+ + + L     E   +  A + F   ++
Sbjct: 35  LIQTVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFIRDAIECFRLTKK 94

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY--SCLIDGLCKSGRL 117
                   T    ++ L K  Y       ++   IL+C      Y  + L+   CK G +
Sbjct: 95  HSFRVPFDTCRNVLEHLMKXKYFKLVWGFYK--EILECGYPASLYFFNILMHRFCKEGEM 152

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            +A  +F ++ +  L   VV+++ +++G    G +D+   L   M  + V P+V T+  L
Sbjct: 153 RLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVL 212

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I+G  + +   +   L  +M +  ++P+    + ++D   KN
Sbjct: 213 INGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKN 254


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 121/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+ +A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +         +M ++N+  D    + ++  L +   S+++
Sbjct: 321 SCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 4/174 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  +  A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEI 119
           +  D  TYT  IDG CK G + E+   +R  R++K    LD  AY+ LI GLC+ GR   
Sbjct: 307 LKPDKITYTTLIDGSCKEGDL-ETAXXYRK-RMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           A ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  ++E A +LF+EM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A      M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  ++E A  L+ EML  G+ P+ V   TL  G  +  +V  A +++ +M   
Sbjct: 211 VLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 XXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    +P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +M+ A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFE 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPD 275


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + E A  +  EM+ KG  PD   +  +   L +  +V++AF LF EM++ GV  D 
Sbjct: 428 CGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDV 487

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++   F  +R   C  ++  Y+ L+    KS +L  A ++FH 
Sbjct: 488 YTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHR 547

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM----------------EENAVAPN 170
           +       + +TYS +I GL   G++ KA +++  +                + + ++PN
Sbjct: 548 MVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPN 607

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V+T+G L++G  +  + S   +LL  M      P+  +   +VD   K
Sbjct: 608 VVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCK 655



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 101/178 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK +++  A +L   ML+ G +P+ ++++ L  G  ++ +++ A ++F  M + G
Sbjct: 614 LVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCG 673

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  ID + K+G +  ++++   +    C  ++  Y+ ++DGLCK+G  E AL
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKAL 733

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L   + +     +VVTY+ +I GL   G++D   +LF+ M+    APN +T+  LI+
Sbjct: 734 NLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILIN 791



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 51/269 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK   IE A + + EM S G  P+VV +  L     +  Q+ +A  +F  M  D
Sbjct: 492 ILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGD 551

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVE--------------------------------- 87
               +  TY+  IDGLCK G I ++ E                                 
Sbjct: 552 ACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTY 611

Query: 88  ------------------LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
                             L   +    CE +   Y  L+DG CK G ++ A E+F  + +
Sbjct: 612 GALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTK 671

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
              +  V TY+ +I  ++ DG++D A  +   M +++  PNV+T+  ++ G  +  E  K
Sbjct: 672 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEK 731

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + LL  M++K   P+    + ++D L K
Sbjct: 732 ALNLLSLMEKKGCSPNVVTYTALIDGLGK 760



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  EI+ A  ++  M   G  P V  + +L   +F+  +++ A K+  +M +D 
Sbjct: 649 LVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 708

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  +DGLCK G   +++ L   +    C  ++  Y+ LIDGL K+G+++  L
Sbjct: 709 CNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGL 768

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       + VTY I+I+     G +D AH L  +M++      +  + T + GF
Sbjct: 769 ELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGF 828

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  + LL +M+  +  P A +  +++D  +K
Sbjct: 829 SKRFLAS--LGLLEEMESHDTAPIAPVYGMLIDSFSK 863



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 107/224 (47%), Gaps = 8/224 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG-------LFEIHQVERAFKLF 54
           L++ YC  ++   A  L++ M + G  P  V++N +FIG       L     ++ A K++
Sbjct: 347 LVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYN-IFIGSICGREELPNPELLDLAEKVY 405

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           +EM       +      F   LC  G   ++ ++ + +       D   Y+ +I  LC++
Sbjct: 406 EEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQA 465

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            R++ A  LF  + +  +  DV TY+I+I      G +++A   F +M     +PNV+T+
Sbjct: 466 KRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTY 525

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             L+H +++  +  +  ++ H+M      P+A   S ++D L K
Sbjct: 526 TALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCK 569



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 6/210 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ K K++     + + M+++G  P   + N+L            A+KLF+ M   G
Sbjct: 312 LLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCG 371

Query: 62  VAADTRTYTIFIDGLC-----KNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSG 115
                  Y IFI  +C      N  +++  E ++  + +  C L+    +     LC  G
Sbjct: 372 CPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVG 431

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           + E A ++   + R   V D  TY+ +I  L    ++DKA  LF +M++  V P+V T+ 
Sbjct: 432 KFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYT 491

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            LI  F +     +      +M+     P+
Sbjct: 492 ILIDSFCKAGLIEQAQSWFDEMRSAGCSPN 521



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 3/195 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G +P  V +N L   L    QVE AF++  EM   G   D  T   F   LCK G   ++
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDA 258

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           ++L         +LD    + +I GL ++     A+   H +     + +VVTY  ++ G
Sbjct: 259 LDLLEREDF---KLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTG 315

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                Q+     +   M      P+   F +L+H +    + +   +L ++M      P 
Sbjct: 316 FLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPG 375

Query: 206 ASIVSIVVDLLAKNE 220
             + +I +  +   E
Sbjct: 376 YVVYNIFIGSICGRE 390



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA---AD 65
           +K    +L L  EM S    P   ++  L     +  ++E A +L  EM     +   A 
Sbjct: 829 SKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMAS 888

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
              +T  I  LC +  + E+V L+  +R      D+ A+ CL+ GL +  +   AL+L +
Sbjct: 889 KDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCY 948

Query: 126 SL 127
            +
Sbjct: 949 GI 950



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C + ++E A+ LYSEM  +GI PD+     L  GL E ++   A +L   + ++G
Sbjct: 895 LIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEG 954

Query: 62  VAADTRTYTIFIDG 75
           V  +      F DG
Sbjct: 955 VNWEGNK---FCDG 965


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGCMP 414



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 118/226 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M   G  P+ + +N L  G  +  +++RA +  D M   
Sbjct: 192 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G +  +VE+   L    C   +  Y+ +IDGL K G+ E A
Sbjct: 252 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   + R  L  D++TYS ++ GL  +G++D+A   F D+E   + PN IT+ +++ G
Sbjct: 312 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             +  +  + I+ L  M  K   P  +  +I+++ +A   ++  +L
Sbjct: 372 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 417



 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK   ++ A+   + M S G +P+V+ HN +   +    +   A KL  +M R 
Sbjct: 122 VLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK 181

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    T+ I I+ LC+ G +  ++++   + +  C  +  +Y+ L+ G CK  +++ A
Sbjct: 182 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 241

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +       D+VTY+ ++  L  DG++D A ++   +     +P +IT+ T+I G
Sbjct: 242 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 301

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +  + I+LL +M+ K + PD    S +V  L++
Sbjct: 302 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 339



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 111/215 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK K+++ A+     M+S+G  PD+V +NTL   L +  +V+ A ++ +++   G
Sbjct: 228 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G    +++L   +R    + DI  YS L+ GL + G+++ A+
Sbjct: 288 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH L    +  + +TY+ ++ GL    Q D+A D    M      P   T+  LI G 
Sbjct: 348 KFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 407

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
                  + ++LL+++  + ++  +S   +   +L
Sbjct: 408 AYEGLAKEALDLLNELCSRGLVKKSSAEQVAAPVL 442



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 100/206 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++   C       A  L S+ML KG  P VV  N L   L     + RA  + ++M   
Sbjct: 157 IILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMH 216

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ +Y   + G CK   +  ++E    +    C  DI  Y+ L+  LCK G++++A
Sbjct: 217 GCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVA 276

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+ + L        ++TY+ +I GL   G+ ++A  L  +M    + P++IT+ +L+ G
Sbjct: 277 VEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSG 336

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R  +  + I+  H ++   + P+A
Sbjct: 337 LSREGKVDEAIKFFHDLEGLGIRPNA 362



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           V +A KL DEM+  G   D  TY + I+G+CK G + E+++    +    C+ ++  ++ 
Sbjct: 98  VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 157

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           ++  +C +GR   A +L   + R      VVT++I+I+ L   G + +A D+   M  + 
Sbjct: 158 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 217

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             PN +++  L+HGF +  +  + IE L  M  +   PD    + ++  L K+
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKD 270



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 75/138 (54%)

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           ++ ++   CK   + ++++L   +R    + D+  Y+ LI+G+CK GRL+ A++  +++P
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                 +V+T++I++  + + G+   A  L  DM     +P+V+TF  LI+   R     
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLG 204

Query: 189 KVIELLHKMKEKNVMPDA 206
           + I++L KM      P++
Sbjct: 205 RAIDILEKMPMHGCTPNS 222



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 53/121 (43%)

Query: 99  LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
             +  +S  +   CK   +  A++L   +       DVVTY+++I+G+  +G++D+A   
Sbjct: 80  FSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 139

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +M      PNVIT   ++             +LL  M  K   P     +I+++ L +
Sbjct: 140 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 199

Query: 219 N 219
            
Sbjct: 200 Q 200


>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
          Length = 548

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK+  I+ AL L+ +ML K +    V +N +  GLF+  +   A ++F EM   G
Sbjct: 304 LVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESG 363

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY   + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR++ A 
Sbjct: 364 MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRMQEAK 423

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV  ++TY +MI  L  +   + A +LF  ME++   P+      +I   
Sbjct: 424 ELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCTPDSCILNEIIRML 483

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   E +K    L K+ +K ++P+A+  S+++ L + N
Sbjct: 484 LNKGEIAKAGHYLSKIDKKGILPEATTTSLLIYLFSVN 521



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG-LFEIHQVERAFKLFDEMQRD 60
           LI G C   ++  A  L S+MLSKGI P  +   T  I  L +  +V     + D +   
Sbjct: 198 LIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDIVDLIIHT 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   +DG C  G + E+V L  ++  +  E DI  Y+ L+DG CK GR++ A
Sbjct: 258 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA 317

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    V+Y+I++HGL+   +   A ++F +M E+ +A ++ T+ T++ G
Sbjct: 318 LTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGMAVSIHTYATVLGG 377

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   +   LL K+   NV  D    +IV+  + K
Sbjct: 378 LCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFK 415



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 119/257 (46%), Gaps = 36/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   ++  G +P+++  N+L  G   +  ++ A  L D M+  G
Sbjct: 234 IINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 293

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +DG CK+G I +++ LFR +   +  L   +Y+ ++ GL ++ R  +A 
Sbjct: 294 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAK 353

Query: 122 ELFHSL-PRGVLVA----------------------------------DVVTYSIMIHGL 146
           E+FH +   G+ V+                                  D++T++I+I  +
Sbjct: 354 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM 413

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +  G+M +A +LF  +    + P ++T+  +I   I+         L   M++    PD+
Sbjct: 414 FKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCTPDS 473

Query: 207 SIVS-IVVDLLAKNEIS 222
            I++ I+  LL K EI+
Sbjct: 474 CILNEIIRMLLNKGEIA 490



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIM 142
           +++E F+ +  +   LD   Y CLI G C  G L  A EL    L +G+    +  ++ +
Sbjct: 175 DAMEKFKHMIDIGVPLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTSI 234

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I+ L  +G++ +  D+   +      PN+ITF +L+ G+  +    + + LL  M+   V
Sbjct: 235 INNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV 294

Query: 203 MPDASIVSIVVD 214
            PD    + +VD
Sbjct: 295 EPDIYTYNTLVD 306



 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I    K +  E A NL+S M   G  PD  I N +   L    ++ +A     ++ + 
Sbjct: 443 VMITNLIKEESFEDADNLFSSMEKSGCTPDSCILNEIIRMLLNKGEIAKAGHYLSKIDKK 502

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL----FRTLR 93
           G+  +  T ++ I     NG   E ++L    +R LR
Sbjct: 503 GILPEATTTSLLIYLFSVNGKYREYIKLLPEKYRFLR 539


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK+  ++ A+ L  EM S+G  PD+  +NT+   L    Q+E A  +F+ +  +G
Sbjct: 422 MIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEG 481

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  TY   I  L ++G   ++V L + + +  C LD+ +Y+ LI  +CK G ++ +L
Sbjct: 482 VVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  + V+Y+I+I  L  + ++  A +L   M    +AP+++T+ TLI+G 
Sbjct: 542 VLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGL 601

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++      + LL K+  +NV PD    +I++
Sbjct: 602 CKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 100/196 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G     ++  A  LY  M  KG +PD   ++ L  GL ++ ++  A +L  EM++ G
Sbjct: 317 VIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKG 376

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TYTI +   CKNG   ++  L   +      L+ Q Y+ +I  LCK GR++ A+
Sbjct: 377 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAM 436

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       D+ +Y+ +I+ L N+ QM++A  +F ++ E  V  N IT+ T+IH  
Sbjct: 437 GLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHAL 496

Query: 182 IRINEPSKVIELLHKM 197
           +R       + L  +M
Sbjct: 497 LRDGRWQDAVRLAKEM 512



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   I  A+ L  EM  KG  P+VV +  +     +    +    L +EM   
Sbjct: 351 ILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +++ Y   I  LCK+G + E++ L + +R   C  DI +Y+ +I  LC + ++E A
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEA 470

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F +L    +VA+ +TY+ +IH L  DG+   A  L  +M  +  + +V+++  LI  
Sbjct: 471 EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKA 530

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + + LL +M EK + P+    +I++  L K
Sbjct: 531 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    +  A  L   M++KG  P V+ +  L  GL  + Q + A  +   +    
Sbjct: 251 VVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN 310

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V      +   I G    G + E+ EL+ T+ +  C+ D   YS L+ GLCK GR+  A+
Sbjct: 311 VV----LFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAV 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     +VVTY+I++H    +G  D    L  +M    +  N   +  +I+  
Sbjct: 367 RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 426

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + L+ +M+ +   PD    + ++  L  NE
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 465



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 4/213 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+    + AL L   M   G  PD V++ T+   L +   V  A  L +EM   G AAD 
Sbjct: 186 CRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADV 245

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+   + G+C  G + E+  L   +    C   +  Y  L+ GLC+  + + A  +   
Sbjct: 246 NTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 305

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +P      +VV ++ +I G   +G++ +A +L+  M      P+  T+  L+HG  ++  
Sbjct: 306 VPE----LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGR 361

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               + LL +M++K   P+    +IV+    KN
Sbjct: 362 IGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN 394



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 2/191 (1%)

Query: 15  ALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRDGVAADTRTYTIF 72
           AL+L  ++  + G++P    +N +   L        A  L+  M  RD V   T T+ + 
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
              LC+ G   E++ L R +    C  D   Y  +I  LC  G +  A  L + +     
Sbjct: 182 ARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
            ADV T+  ++ G+   G++ +A  L   M      P V+T+G L+ G  R+ +  +   
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301

Query: 193 LLHKMKEKNVM 203
           +L ++ E NV+
Sbjct: 302 MLGRVPELNVV 312



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK + +  AL L  +ML++G+ PD+V +NTL  GL ++  +  A  L +++  +
Sbjct: 561 ILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE 620

Query: 61  GVAADTRTYTIFIDGLCK 78
            V  D  TY I I   CK
Sbjct: 621 NVHPDIITYNILISWHCK 638



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 49  RAFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL----RILKCELDIQA 103
           RA  L D++ +R GV    R+Y + +  L +     +++ L+R +    R+         
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTF---T 177

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           +      LC+ GR + AL L   + R   V D V Y  +IH L + G + +A  L  +M 
Sbjct: 178 FGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEML 237

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
               A +V TF  ++ G   +    +   L+ +M  K  MP
Sbjct: 238 LMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMP 278


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 115/216 (53%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKE-IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI   CKNKE ++ AL ++ EM ++G +PD   + TL  GL  +  +  A +LF EM++
Sbjct: 160 ILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQ 219

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G +A   TYT  I GLC++  + E++ L   ++    E ++  YS L+DGLCK G    
Sbjct: 220 KGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQ 279

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A++L   + +   + ++VTYS +I+GL  + ++ +A ++   M    + PN   +G +I 
Sbjct: 280 AMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIIS 339

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           G        +    + +M    + P+ +  S+ V +
Sbjct: 340 GLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRM 375



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +  GY +      A+ ++ +M    ++P    + T+   L E + V+RA   + EM+  G
Sbjct: 91  ICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELG 150

Query: 62  VAADTRTYTIFIDGLCKNGYIVES-VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           + +   +  I I  LCKN   V+S + +F+ +    C+ D   Y  LI+GLC+ G +  A
Sbjct: 151 IPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEA 210

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  + +    A VVTY+ +IHGL     +D+A  L  +M+ N + PNV T+ +L+ G
Sbjct: 211 KELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDG 270

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    S+ ++LL  M +K+ +P+    S +++ L K
Sbjct: 271 LCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCK 308



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 1/197 (0%)

Query: 40  GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           G   +H+   A ++F +M+   +    + Y   +D L +  ++  ++  +R +R L    
Sbjct: 94  GYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPS 153

Query: 100 DIQAYSCLIDGLCKSGR-LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
            + + + LI  LCK+   ++ AL +F  +P      D  TY  +I+GL   G + +A +L
Sbjct: 154 SVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKEL 213

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +ME+   + +V+T+ +LIHG  + N   + I LL +MK  ++ P+    S ++D L K
Sbjct: 214 FKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCK 273

Query: 219 NEISLNSLPSFTVHERQ 235
              S  ++    V +++
Sbjct: 274 GGHSSQAMQLLEVMDKK 290



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK +++  A+ +   M  +G+KP+  ++  +  GL      + A    DEM   G
Sbjct: 302 LINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGG 361

Query: 62  VAAD-------TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           ++ +        R + + + GLC N     + +L+ ++R     ++I  + CL+   CK 
Sbjct: 362 ISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKR 421

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           G L  A  +   +     + D   ++++I GL++  ++ +A +  L
Sbjct: 422 GDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREATEQLL 467



 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 42/218 (19%)

Query: 33  IHNTLFIGLFEIHQ-VERAFKLFDEMQRD---GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           I N+L + L +  + V +A  +FD    +   G   D  T+ + I  L        +  +
Sbjct: 13  ITNSLVVQLIKAEKDVHKAVNMFDSATAEYGNGFRHDHETFGLIISRLVTVNQFRPAEGM 72

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL--------------------- 127
              ++  KC +    +  +  G  +  R   A+ +FH +                     
Sbjct: 73  LERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVE 132

Query: 128 ----PRGV----------LVADVVTYSIMIHGL-YNDGQMDKAHDLFLDMEENAVAPNVI 172
                R +          + + VV+ +I+I  L  N   +D A  +F +M      P+  
Sbjct: 133 ENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSY 192

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           T+GTLI+G  R+   S+  EL  +M++K     AS+V+
Sbjct: 193 TYGTLINGLCRLGNISEAKELFKEMEQKGF--SASVVT 228


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK+  ++ A+ L  EM S+G  PD+  +NT+   L    Q+E A  +F+ +  +G
Sbjct: 406 MIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  TY   I  L ++G   ++V L + + +  C LD+ +Y+ LI  +CK G ++ +L
Sbjct: 466 VVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  + V+Y+I+I  L  + ++  A +L   M    +AP+++T+ TLI+G 
Sbjct: 526 VLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGL 585

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            ++      + LL K+  +NV PD    +I++
Sbjct: 586 CKMGWMHAALNLLEKLHNENVHPDIITYNILI 617



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 100/196 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G     ++  A  LY  M  KG +PD   ++ L  GL ++ ++  A +L  EM++ G
Sbjct: 301 VIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKG 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TYTI +   CKNG   ++  L   +      L+ Q Y+ +I  LCK GR++ A+
Sbjct: 361 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAM 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       D+ +Y+ +I+ L N+ QM++A  +F ++ E  V  N IT+ T+IH  
Sbjct: 421 GLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHAL 480

Query: 182 IRINEPSKVIELLHKM 197
           +R       + L  +M
Sbjct: 481 LRDGRWQDAVRLAKEM 496



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   I  A+ L  EM  KG  P+VV +  +     +    +    L +EM   
Sbjct: 335 ILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 394

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +++ Y   I  LCK+G + E++ L + +R   C  DI +Y+ +I  LC + ++E A
Sbjct: 395 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEA 454

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F +L    +VA+ +TY+ +IH L  DG+   A  L  +M  +  + +V+++  LI  
Sbjct: 455 EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKA 514

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + + LL +M EK + P+    +I++  L K
Sbjct: 515 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 552



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    +  A  L   M++KG  P V+ +  L  GL  + Q + A  +   +    
Sbjct: 235 VVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V      +   I G    G + E+ EL+ T+ +  C+ D   YS L+ GLCK GR+  A+
Sbjct: 295 VV----LFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAV 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     +VVTY+I++H    +G  D    L  +M    +  N   +  +I+  
Sbjct: 351 RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + L+ +M+ +   PD    + ++  L  NE
Sbjct: 411 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 449



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 4/213 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+    + AL L   M   G  PD V++ T+   L +   V  A  L +EM   G AAD 
Sbjct: 170 CRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADV 229

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+   + G+C  G + E+  L   +    C   +  Y  L+ GLC+  + + A  +   
Sbjct: 230 NTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 289

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +P      +VV ++ +I G   +G++ +A +L+  M      P+  T+  L+HG  ++  
Sbjct: 290 VPE----LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGR 345

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               + LL +M++K   P+    +IV+    KN
Sbjct: 346 IGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN 378



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 5/202 (2%)

Query: 18  LYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           LY  M+ +  + P           L  + + + A  L   M R G   D   Y   I  L
Sbjct: 145 LYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHAL 204

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C  G + E+  L   + ++ C  D+  +  ++ G+C  GR+  A  L   +     +  V
Sbjct: 205 CDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGV 264

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           +TY  ++ GL    Q D+A  +   + E     NV+ F T+I G +   + ++  EL   
Sbjct: 265 MTYGFLLQGLCRVRQADEARAMLGRVPE----LNVVLFNTVIGGCLAEGKLAEATELYET 320

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           M  K   PDA   SI++  L K
Sbjct: 321 MGLKGCQPDAHTYSILMHGLCK 342



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%)

Query: 49  RAFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
           R F L+  M  RD V   T T+ +    LC+ G   E++ L R +    C  D   Y  +
Sbjct: 141 RRFALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTV 200

Query: 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           I  LC  G +  A  L + +      ADV T+  ++ G+   G++ +A  L   M     
Sbjct: 201 IHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGC 260

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            P V+T+G L+ G  R+ +  +   +L ++ E NV+
Sbjct: 261 MPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV 296



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK + +  AL L  +ML++G+ PD+V +NTL  GL ++  +  A  L +++  +
Sbjct: 545 ILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE 604

Query: 61  GVAADTRTYTIFIDGLCK 78
            V  D  TY I I   CK
Sbjct: 605 NVHPDIITYNILISWHCK 622


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 117/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +  +   E    +Y +M+++   PD+ + NT    +F+  + E+   +F+E++   
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR 547

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R+Y+I I GL K G+  E+ ELF +++   C LD +AY+ +IDG CK G++  A 
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +        VVTY  +I GL    ++D+A+ LF + +   +  NV+ + +LI GF
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   +L ++ +K + P+    + ++D L K E
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAE 706



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 121/235 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+CK  ++  A  L  EM +KG +P VV + ++  GL +I +++ A+ LF+E +  
Sbjct: 592 IVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y+  IDG  K G I E+  +   L       ++  ++ L+D L K+  +  A
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEA 711

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  F S+       + VTY I+I+GL    + +KA   + +M++  + P+ I++ T+I G
Sbjct: 712 LVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISG 771

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +    ++   L  + K    +PD++  + +++ L+    ++++   F    R+
Sbjct: 772 LAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  E E    ++ E+ ++   PD   ++ L  GL +       ++LF  M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  G   DTR Y I IDG CK G + ++ +L   ++    E  +  Y  +IDGL K  RL
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       +  +VV YS +I G    G++D+A+ +  ++ +  + PN+ T+ +L
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSL 698

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E ++ +     MKE    P+     I+++ L K
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK+++++ A  ++ EM  K   PD +   +L  GL ++ +V+ A+K++++M   
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDS 476

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               ++  YT  I     +G   +  ++++ +    C  D+Q  +  +D + K+G  E  
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     V D  +YSI+IHGL   G  ++ ++LF  M+E     +   +  +I G
Sbjct: 537 RAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDG 596

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  + +K  +LL +MK K   P       V+D LAK
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 1/211 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  +++ AL ++ EM  K   P++  +N L   L    +++ AF+L D MQ+ G+  + R
Sbjct: 355 KMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I +D LCK+  + E+  +F  +    C  D   +  LIDGL K GR++ A +++  +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  + + Y+ +I   +N G+ +  H ++ DM     +P++    T +    +  EP
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEP 533

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            K   +  ++K +  +PDA   SI++  L K
Sbjct: 534 EKGRAMFEEIKARRFVPDARSYSILIHGLIK 564



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K         L+  M  +G   D   +N +  G  +  +V +A++L +EM+  
Sbjct: 557 ILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK 616

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   IDGL K   + E+  LF   +  + EL++  YS LIDG  K GR++ A
Sbjct: 617 GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   L +  L  ++ T++ ++  L    ++++A   F  M+E    PN +T+G LI+G
Sbjct: 677 YLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILING 736

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ + +K      +M+++ + P     + ++  LAK
Sbjct: 737 LCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 108/219 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   ++ A  L+ E  SK I+ +VVI+++L  G  ++ +++ A+ + +E+ + G
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ LKC  +   Y  LI+GLCK  +   A 
Sbjct: 688 LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  +    ++Y+ MI GL   G + +A  LF   + N   P+   +  +I G 
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              N       L  + + + +        +++D L KN+
Sbjct: 808 SNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKND 846



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K   ++ A  +Y +ML    + + +++ +L    F   + E   K++ +M    
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN 512

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D +    ++D + K G   +   +F  ++  +   D ++YS LI GL K+G      
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETY 572

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF+S+     V D   Y+I+I G    G+++KA+ L  +M+     P V+T+G++I G 
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  I S ++D   K
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L L+ +M   G +P V +  TL  G  +  +V+ A  L DEM+   + AD   Y + ID 
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
             K G +  + + F  +     + D   Y+ +I  LCK+ RL+ A+E+F  L +   V  
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
              Y+ MI G  + G+ D+A+ L          P+VI +  ++    ++ +  + +++  
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           +MK K+  P+ S  +I++D+L +
Sbjct: 368 EMK-KDAAPNLSTYNILIDMLCR 389



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 47/271 (17%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+ + K  +++ A   + E+ + G+KPD V + ++   L + ++++ A ++F+ ++++
Sbjct: 243 VCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN 302

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-------------ILKC---------- 97
                T  Y   I G    G   E+  L    R             IL C          
Sbjct: 303 RRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEA 362

Query: 98  -----------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        ++  Y+ LID LC++G+L+ A EL  S+ +  L  +V T +IM+  L
Sbjct: 363 LKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D+A  +F +M+     P+ ITF +LI G  ++      ++  +K+ EK +  D 
Sbjct: 423 CKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR----VDDAYKVYEKMLDSDC 478

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
              SIV   L KN         F  H R+E+
Sbjct: 479 RTNSIVYTSLIKN---------FFNHGRKED 500



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 95/217 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G  K  ++    ++   M     +P    + TL      ++  +    LF +MQ  G
Sbjct: 139 MVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG 198

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  +T  I G  K G +  ++ L   ++    + DI  Y+  ID   K G++++A 
Sbjct: 199 YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAW 258

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH +    L  D VTY+ MI  L    ++D+A ++F  +E+N   P    + T+I G+
Sbjct: 259 KFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGY 318

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +  +   LL + + K  +P     + ++  L K
Sbjct: 319 GSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 91/204 (44%), Gaps = 2/204 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   C+N   +    +  EM   G  P V     + +G  + +++   + +   M++ 
Sbjct: 105 LLVMARCRN--FDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKF 162

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                   YT  I       +    + LF+ ++ L  E  +  ++ LI G  K GR++ A
Sbjct: 163 KFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSA 222

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +    L AD+V Y++ I      G++D A   F ++E N + P+ +T+ ++I  
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGV 282

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
             + N   + +E+   +++   +P
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVP 306



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K +EI  AL  +  M      P+ V +  L  GL ++ +  +AF  + EMQ+ G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T +YT  I GL K G I E+  LF   +      D   Y+ +I+GL    R   A 
Sbjct: 758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
            LF    R  L     T  +++  L+ +  +++A
Sbjct: 818 SLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQA 851



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK ++   A   + EM  +G+KP  + + T+  GL +   +  A  LFD  + +
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
           G   D+  Y   I+GL      +++  LF   R  +  L I   +C  L+D L K+  LE
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR--RRGLPIHNKTCVVLLDTLHKNDCLE 849

Query: 119 IA 120
            A
Sbjct: 850 QA 851


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 113/215 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC++  ++ AL + + M   GI+ DV  +NTL  GL  ++++E A KL   M  +G
Sbjct: 314 MIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V ++  +YT  I    K G +VE+  LFR +        +  Y+ +IDG  KSG +  A 
Sbjct: 374 VESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAE 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  LV DV TY+ ++HG   +G++D A  LF +M++    PNV+ +  LI G 
Sbjct: 434 RFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGL 493

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +     +  +    M    + PD ++ S++V  L
Sbjct: 494 AKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSL 528



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 112/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN YC+   +  A  ++ E +  GI+P+   +  L  G  +I Q+E A  L  +MQ  G
Sbjct: 244 VINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   +   IDG C++G + +++E+   +  +  +LD+  Y+ L  GLC+  R+E A 
Sbjct: 304 VGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAK 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H +    + ++ V+Y+ +I     +G M +A  LF DME     P+V+T+  +I G+
Sbjct: 364 KLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGY 423

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           I+     +      +M++K ++PD    + +V
Sbjct: 424 IKSGSIREAERFKKEMEKKGLVPDVYTYAALV 455



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G+CK   ++ A  L  EM   G+K +   +N L           R  ++  EM+  
Sbjct: 138 VVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESG 197

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TYTI +DGL   G I +   +F  ++      D+  YS +I+  C++G +  A
Sbjct: 198 GVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRA 257

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F       +  +  TY  +I+G    GQ++ A  L  DM+   V  N I F T+I G
Sbjct: 258 SEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDG 317

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + R     K +E+   M+   +  D
Sbjct: 318 YCRHGMVDKALEIKAVMERMGIQLD 342



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  ++  A  L+ +M  KG +P VV +N +  G  +   +  A +   EM++ G
Sbjct: 384 LISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKG 443

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G C NG +  ++ LF  ++    + ++ AY+ LI GL K GR E A 
Sbjct: 444 LVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAF 503

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           + + ++    L  D   YS+++  L+ D + D+
Sbjct: 504 QFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDE 536



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%)

Query: 40  GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
           G  +  +++ A +L DEM R GV  +   Y   +D   +        E+ + +     E 
Sbjct: 142 GFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEP 201

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
            +  Y+ L+DGL  +G +     +F  + R  +  DV  YS +I+     G + +A ++F
Sbjct: 202 TVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVF 261

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   N + PN  T+G LI+GF +I +      LL  M+ + V  +  I + ++D   ++
Sbjct: 262 DECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRH 321

Query: 220 EISLNSLPSFTVHER 234
            +   +L    V ER
Sbjct: 322 GMVDKALEIKAVMER 336



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GY K+  I  A     EM  KG+ PDV  +  L  G     +V+ A +LF+EM++ 
Sbjct: 418 VMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQR 477

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G   +   YT  I GL K G   E+ + +  +       D   YS L+  L
Sbjct: 478 GAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSL 528



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 80  GYIVESVELFRTLRILKCELDIQ--AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           G+++ + EL R   +  C   I   + S ++DG CK+GR++ A  L   +PR  +  +  
Sbjct: 111 GHLLPAAELLRKA-LASCPGCITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNAC 169

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y+ ++          +  ++  +ME   V P V T+  L+ G     + SKV  +  ++
Sbjct: 170 CYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEI 229

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
           K KNV  D    S V++   +
Sbjct: 230 KRKNVAGDVYFYSAVINAYCR 250


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 114/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ YCK  +I+ A  L SEM SKG  PDVV + ++  G   I ++++A K+  +M +  
Sbjct: 463 IVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHH 522

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT F++GLC+NG  +E+ ++           +   YS ++ GL + G+L  A 
Sbjct: 523 CKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEAC 582

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +       + V  ++++H L  DG+  +A+ L  +      A NV+ F T+IHGF
Sbjct: 583 DVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGF 642

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + ++    + LL  M   N  PD    + ++D LAK +
Sbjct: 643 CQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTD 681



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 115/226 (50%), Gaps = 1/226 (0%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           E++ AL     M+  GI P+VV +N L  G   +HQV++A +L D+M   G + D  +Y 
Sbjct: 331 ELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYY 390

Query: 71  IFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
             +  LC++  + E  EL + ++   K   D   Y+ LI  L K G  + ALE+     +
Sbjct: 391 TVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEK 450

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                D V YS ++H    +G++ KA +L  +M      P+V+T+ +++ GF RI +  +
Sbjct: 451 LRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQ 510

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             +++ +M + +  P+A   +  ++ L +N  SL +     + E +
Sbjct: 511 AKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEE 556



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 2/224 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC   +++ A+ L  +M SKG  PD V + T+   L    ++    +L  +MQ D 
Sbjct: 357 LIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDS 416

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I  L K+G+  E++E+ +    L+ ++D   YS ++   CK G+++ A
Sbjct: 417 KLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKA 476

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +       DVVTY+ ++ G    G++D+A  +   M ++   PN +T+ T ++G
Sbjct: 477 KELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNG 536

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
             R  +  +  ++++  +E+   P+A   S+VV  L + E  LN
Sbjct: 537 LCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGL-RREGKLN 579



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 33/249 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G  +  ++  A ++  EM+ KG  P+ V  N L   L    +   A +L  E    
Sbjct: 567 VVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNK 626

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A +   +T  I G C+   +  ++ L   + +     D   Y+ LID L K+ R+E A
Sbjct: 627 GCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEA 686

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQ----------------------------- 151
            EL   + R  LV   VTY  +IH     G+                             
Sbjct: 687 TELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQTAYNLVIEKLC 746

Query: 152 ----MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
               +++A+ L  ++   A   +  T   L+  ++ +  P    ++  +M  +N++PD  
Sbjct: 747 KFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVGIPMSAYKVACRMFNRNLIPDLK 806

Query: 208 IVSIVVDLL 216
           +   V   L
Sbjct: 807 LCEKVSKRL 815



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 2/172 (1%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           R F   D + R     D+  Y + ++ L K      +  + R +   + +L  +A+  ++
Sbjct: 231 RFFYWADRLWR--YRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVM 288

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
               ++GRL  A+++   + +  +  ++   +  IH L    ++ KA      M    +A
Sbjct: 289 VSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIA 348

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           PNV+T+  LI G+  +++  + +EL+ +M  K   PD      V+ LL +++
Sbjct: 349 PNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDK 400


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+  +IE A  L  EMLS+G  P VV +NT+  GL +  +V  A KL D M    
Sbjct: 278 LIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKN 337

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G  + G I E+  LF  LR       +  Y+ LIDGLC+ G L++A+
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAM 397

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     DV T++  + G    G +  A +LF +M    + P+   + T I G 
Sbjct: 398 RLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGE 457

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +++ +PSK   +  +M  +   PD    ++ +D L K
Sbjct: 458 LKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHK 494



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 108/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            + G+CK   +  A  L+ EML++G++PD   + T  +G  ++    +AF + +EM   G
Sbjct: 418 FVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARG 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY +FIDGL K G + E+ EL + +       D   Y+ +I     +G L  A 
Sbjct: 478 FPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKAR 537

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +   VVTY+++IH     G++  A   F +M E  V PNVIT+  LI+G 
Sbjct: 538 ALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGL 597

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++ +  +      +M+ K + P+    +I+++
Sbjct: 598 CKVRKMDQAYNFFAEMQAKGISPNKYTYTILIN 630



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI-HQVERAFKLFDEMQR 59
           +L+  Y K   +E  L ++ +M+SKG+ PDV   N +   L +  + ++ A ++++ M  
Sbjct: 136 LLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVE 195

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+     TY   +D  CK G + E+++L   ++ + C  +   Y+ L++GL  SG +E 
Sbjct: 196 CGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQ 255

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A EL   + R  L   V TY  +I G    GQ+++A  L  +M      P V+T+ T+++
Sbjct: 256 AKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMY 315

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G  +    S   +LL  M  KN+MPD
Sbjct: 316 GLCKWGRVSDARKLLDVMVNKNLMPD 341



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 116/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY +   I  A  L++E+  + + P VV +NTL  GL  +  ++ A +L DEM + G
Sbjct: 348 LIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHG 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL--------------RI------------- 94
              D  T+T F+ G CK G +  + ELF  +              RI             
Sbjct: 408 PDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAF 467

Query: 95  -LKCEL-------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++ E+       D+  Y+  IDGL K G L+ A EL   +    LV D VTY+ +IH  
Sbjct: 468 GMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAH 527

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G + KA  LFL+M    + P+V+T+  LIH +         I    +M EK V P+ 
Sbjct: 528 LMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNV 587

Query: 207 SIVSIVVDLLAK 218
              + +++ L K
Sbjct: 588 ITYNALINGLCK 599



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ +CK   ++ AL L  +M + G  P+ V +N L  GL    ++E+A +L  +M R G
Sbjct: 208 MLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLG 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I G C+ G I E+  L   +        +  Y+ ++ GLCK GR+  A 
Sbjct: 268 LEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDAR 327

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L+ D+V+Y+ +I+G    G + +A  LF ++   ++AP+V+T+ TLI G 
Sbjct: 328 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGL 387

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R+ +    + L  +M +    PD
Sbjct: 388 CRLGDLDVAMRLKDEMIKHGPDPD 411



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 113/212 (53%), Gaps = 2/212 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           ++  I+ A  +Y+ M+  GI P VV +NT+     +   V+ A +L  +MQ  G + +  
Sbjct: 179 RDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDV 238

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS- 126
           TY + ++GL  +G + ++ EL + +  L  E+ +  Y  LI G C+ G++E A  L    
Sbjct: 239 TYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEM 298

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L RG  V  VVTY+ +++GL   G++  A  L   M    + P+++++ TLI+G+ R+  
Sbjct: 299 LSRGA-VPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN 357

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +   L  +++ +++ P     + ++D L +
Sbjct: 358 IGEAFLLFAELRYRSLAPSVVTYNTLIDGLCR 389



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG   + E+E A  L  +ML  G++  V  ++ L  G  E  Q+E A +L +EM   
Sbjct: 242 VLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSR 301

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   + GLCK G + ++ +L   +       D+ +Y+ LI G  + G +  A
Sbjct: 302 GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEA 361

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L    L   VVTY+ +I GL   G +D A  L  +M ++   P+V TF T + G
Sbjct: 362 FLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRG 421

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD--ASIVSIVVDL 215
           F ++       EL  +M  + + PD  A I  IV +L
Sbjct: 422 FCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGEL 458



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 71/130 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ Y     ++ A+  + EM  KG+ P+V+ +N L  GL ++ ++++A+  F EMQ  
Sbjct: 557 VLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAK 616

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TYTI I+  C  G+  E++ L++ +   + + D   +  L+  L K  +L + 
Sbjct: 617 GISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVV 676

Query: 121 LELFHSLPRG 130
             L + +  G
Sbjct: 677 RHLENVIAAG 686



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G  K   ++ A  L  +ML  G+ PD V + ++         + +A  LF EM   
Sbjct: 487 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSK 546

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT+ I      G +  ++  F  +       ++  Y+ LI+GLCK  +++ A
Sbjct: 547 GIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQA 606

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
              F  +    +  +  TY+I+I+   N G   +A  L+ DM +  + P+  T  +L+
Sbjct: 607 YNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLL 664



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 5/167 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +     +  A  L+ EMLSKGI P VV +  L        +++ A   F EM   G
Sbjct: 523 IIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKG 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I+GLCK   + ++   F  ++      +   Y+ LI+  C  G  + AL
Sbjct: 583 VHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEAL 642

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
            L+  +    +  D  T+  ++  L  D ++     L     EN +A
Sbjct: 643 RLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVVRHL-----ENVIA 684


>gi|297834652|ref|XP_002885208.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331048|gb|EFH61467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 218

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 8/194 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK  ++E A NL++ +L  G++PDV  +N +         + RA KL+ EM R 
Sbjct: 19  IIIHGMCKAGKLEEAWNLFTNLLLSGLQPDVKTYNMMI----RFSALGRAEKLYAEMLRR 74

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  DT TY   I GLCK   + E+ ++F ++    C      ++ LI+G CK+ R++  
Sbjct: 75  GIVPDTITYNSMIHGLCKQNKLAEARKVFDSMDNKSCS----TFNTLINGYCKARRVDDG 130

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  + R  +VA+V+TY+ +IHG    G    A D+F +M  N V  + ITF  ++  
Sbjct: 131 IDLFCEMYRRGIVANVITYTTLIHGFRQVGDFKTALDIFQEMVSNGVRSSSITFRDILPE 190

Query: 181 FIRINEPSKVIELL 194
                E  K + +L
Sbjct: 191 LCSKKELRKAVAML 204



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 36/201 (17%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +F  M+   +  DT  Y I I G+CK G + E+  LF  L +   + D++ Y+ +I    
Sbjct: 1   MFKVMRESNMDMDTAVYNIIIHGMCKAGKLEEAWNLFTNLLLSGLQPDVKTYNMMIR-FS 59

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH---------------- 156
             GR E   +L+  + R  +V D +TY+ MIHGL    ++ +A                 
Sbjct: 60  ALGRAE---KLYAEMLRRGIVPDTITYNSMIHGLCKQNKLAEARKVFDSMDNKSCSTFNT 116

Query: 157 ---------------DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
                          DLF +M    +  NVIT+ TLIHGF ++ +    +++  +M    
Sbjct: 117 LINGYCKARRVDDGIDLFCEMYRRGIVANVITYTTLIHGFRQVGDFKTALDIFQEMVSNG 176

Query: 202 VMPDA-SIVSIVVDLLAKNEI 221
           V   + +   I+ +L +K E+
Sbjct: 177 VRSSSITFRDILPELCSKKEL 197


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   +E AL    + ++ G +PD + +NT   GL +   V  A K+ D M ++
Sbjct: 164 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I ++ LCKNG + E+  +   +    C  DI  ++ LI  LC   RLE A
Sbjct: 224 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA 283

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +  DV T++I+I+ L   G    A  LF +M+ +   P+ +T+ TLI  
Sbjct: 284 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 343

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAK 218
              + +  K ++LL  M E    P ++I  + ++D L K
Sbjct: 344 LCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCK 381



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  +   AL L+ EM + G  PD V +NTL   L  + ++ +A  L  +M+  
Sbjct: 304 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMEST 363

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T TY   IDGLCK   I E+ E+F  + +     +   ++ LIDGLCK  +++ A
Sbjct: 364 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 423

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL + +    L  + +TY+ ++      G + KA D+   M  N    +V+T+GTLI+G
Sbjct: 424 FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 483

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
             +       +++L  M+ K + P     + V+  L  +N I
Sbjct: 484 LCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 525



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 109/205 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CKN ++E A  + ++M+ +G  PD+   NTL   L   +++E A  L  ++   
Sbjct: 234 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 293

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  T+ I I+ LCK G    ++ LF  ++   C  D   Y+ LID LC  G+L  A
Sbjct: 294 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 353

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +         +TY+ +I GL    ++++A ++F  M+   ++ N ITF TLI G
Sbjct: 354 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 413

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     EL+++M  + + P+
Sbjct: 414 LCKDKKIDDAFELINQMISEGLQPN 438



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    +E AL+L  ++  KG+ PDV   N L   L ++     A +LF+EM+  G
Sbjct: 270 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID LC  G + ++++L + +    C      Y+ +IDGLCK  R+E A 
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 389

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + +T++ +I GL  D ++D A +L   M    + PN IT+ +++  +
Sbjct: 390 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 449

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  ++L  M       D      +++ L K
Sbjct: 450 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK 486



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 35/237 (14%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++YSEM ++GIKPDVV  NTL   L   HQV  A  + +EM   GVA D  T+T  + G 
Sbjct: 75  SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 134

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE-------------- 122
            + G I  ++ +   +  + C       + LI+G CK GR+E AL               
Sbjct: 135 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 194

Query: 123 -LFHSLPRG---------------VLV-----ADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
             +++   G               V+V      DV TY+I+++ L  +GQ+++A  +   
Sbjct: 195 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 254

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M +    P++ TF TLI      N   + ++L  ++  K V PD    +I+++ L K
Sbjct: 255 MVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 311



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 2/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   IE AL + + ML  G     V  N L  G  ++ +VE A     +   DG
Sbjct: 130 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 189

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY  F++GLC+N ++  ++++   +     + D+  Y+ +++ LCK+G+LE A 
Sbjct: 190 FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 249

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + + +  RG L  D+ T++ +I  L    ++++A DL   +    V+P+V TF  LI+ 
Sbjct: 250 GILNQMVDRGCL-PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 308

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             ++ +P   + L  +MK     PD    + ++D L
Sbjct: 309 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 344



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 106/211 (50%), Gaps = 1/211 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+K+I+ A  L ++M+S+G++P+ + +N++     +   +++A  + + M  +G
Sbjct: 410 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLCK G    ++++ R +RI       +AY+ ++  L +   +  AL
Sbjct: 470 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL-YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF  +       D +TY I+  GL    G + +A D  L+M +    P   +F  L  G
Sbjct: 530 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 589

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            + +      I  +  + EK  + ++ + +I
Sbjct: 590 LLNLGMDDYFIRAIEIIMEKVDLRESDVSAI 620



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/160 (16%), Positives = 69/160 (43%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ADT  Y   ++ L +   +     ++  +     + D+  ++ L+  LC++ ++  A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   +    +  D  T++ ++ G   +G ++ A  +   M E   +   +T   LI+G
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + ++      +  + +       PD    +  V+ L +N+
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 208



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 10/191 (5%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----YSCLI 108
           L  EM+R+G          F+D         ++V+L   L  L+    IQA    Y+ L+
Sbjct: 4   LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI--LNQLQPLFGIQADTVVYNHLL 61

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + L +  ++++   ++  +    +  DVVT++ ++  L    Q+  A  +  +M    VA
Sbjct: 62  NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 121

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
           P+  TF TL+ GF+        IE   ++K + +    S   + V++L      L  +  
Sbjct: 122 PDETTFTTLMQGFVE----EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 177

Query: 229 FTVHERQEEVD 239
              + +QE  D
Sbjct: 178 ALGYIQQEIAD 188


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 108/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+CK K +  A ++++EM+ KG KPD+V HN +  GL    Q   A KLF  M+  
Sbjct: 237 VLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAK 296

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D R+YTI I  LC+   + E+VE F+ +    C+ D   Y+CLI G     R+++ 
Sbjct: 297 GPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMV 356

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +       D +TY+ +I  +      D A  ++  M ++ + P + T+  ++  
Sbjct: 357 YDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKS 416

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +         +  +M  K   PD +  ++++
Sbjct: 417 YFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLI 449



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 87/184 (47%)

Query: 21  EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
           E L     P++  +  L  G  ++  +  A  +++EM   G   D   + I ++GL ++ 
Sbjct: 222 ENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSK 281

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
              ++++LF  ++      D+++Y+ LI  LC+  ++E A+E F  +       D   Y+
Sbjct: 282 QRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYT 341

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            +I G  N  +MD  +DL  +M+E    P+ +T+  LI    R+  P     +  KM + 
Sbjct: 342 CLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQS 401

Query: 201 NVMP 204
            + P
Sbjct: 402 GIEP 405



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  +   KE + A+ ++  M     K  V   N L   L      + A  LF+ + + 
Sbjct: 168 IAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENL-KG 226

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + RTYT+ ++G CK   ++E+  ++  +     + DI A++ +++GL +S +   A
Sbjct: 227 RFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDA 286

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  +       DV +Y+I+I  L    +M++A + F +M ++   P+   +  LI G
Sbjct: 287 IKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITG 346

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F        V +LL +MKE+   PD    + ++ L+ +
Sbjct: 347 FGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTR 384



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 86/198 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C+  ++E A+  + EM+  G KPD  ++  L  G     +++  + L  EM+ +
Sbjct: 307 ILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEE 366

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I  + +     ++  +++ +     E  I  Y+ ++    ++   E+ 
Sbjct: 367 GCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMG 426

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  + R     D  +Y+++I GL + G+  +A     +M E  +    + +      
Sbjct: 427 RAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGAD 486

Query: 181 FIRINEPSKVIELLHKMK 198
             R   P  + EL  ++K
Sbjct: 487 LSRGGNPDILEELAQRLK 504



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 86/202 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G  ++K+   A+ L+  M +KG  PDV  +  L   L    ++E A + F EM   
Sbjct: 272 IMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDS 331

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   YT  I G      +    +L + ++   C  D   Y+ LI  + +    + A
Sbjct: 332 GCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDA 391

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  + +  +   + TY++++   +     +    ++ +M      P+  ++  LI G
Sbjct: 392 ARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGG 451

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
            I      +  + L +M EK +
Sbjct: 452 LISQGRSGEACKYLEEMLEKGM 473


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C    ++ A+ L S + S G KPD + + T+  GL    Q ERA +L  EM    
Sbjct: 432 ILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSD 491

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   +  LC+ G +  ++ +   +    C  DI  Y+C+IDGLC    ++ A+
Sbjct: 492 CPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAM 551

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   L       D+VT++ ++ GL    + + A  L  +M  +   P+ +TF T+I   
Sbjct: 552 ELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSL 611

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    ++ IE L  M E   +P++S  SIVVD L K
Sbjct: 612 CQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648



 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 106/216 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN  C   +++ ALN+ S + S G KPD V +  +   L    + +   +L  EM  +
Sbjct: 326 VLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSN 385

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D  T+   +  LC+ G +  ++E+   +    C  DI  YS ++DGLC  GR++ A
Sbjct: 386 NCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDA 445

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   L       D + Y+ ++ GL +  Q ++A +L  +M  +   P+ +TF T++  
Sbjct: 446 VELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVAS 505

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +     + I ++ +M E    PD    + ++D L
Sbjct: 506 LCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGL 541



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  ++ E A  L +EML     PD V  NT+   L +   V+RA ++ ++M  +G
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY   IDGLC    I +++EL   L+   C+ DI  ++ L+ GLC   R E A 
Sbjct: 527 CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAE 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  ++ R     D +T++ +I  L   G + +A +    M EN   PN  T+  ++   
Sbjct: 587 QLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDAL 646

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +    +ELL  M   N  PD    + V+  L K
Sbjct: 647 LKAGKAQAALELLSGM--TNGTPDLITYNTVISNLTK 681



 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 38/257 (14%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           KE+E    L +EM S    PD V  NT+   L +   V+RA ++ D M   G  AD  TY
Sbjct: 373 KEVE---ELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTY 429

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-- 127
           +  +DGLC  G + ++VEL   L+   C+ D  AY+ ++ GLC + + E A EL   +  
Sbjct: 430 SSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLC 489

Query: 128 -----------------------PRGVLVA----------DVVTYSIMIHGLYNDGQMDK 154
                                   R + V           D+VTY+ +I GL N+  +D 
Sbjct: 490 SDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDD 549

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A +L  D++     P+++TF TL+ G   ++      +L+  M   N  PD    + V+ 
Sbjct: 550 AMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVIT 609

Query: 215 LLAKNEISLNSLPSFTV 231
            L +  +   ++ +  +
Sbjct: 610 SLCQKGLLTQAIETLKI 626



 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGYC+   IE A  L + M      PD    N L   L    ++  A  +FD+M   G
Sbjct: 225 MVNGYCRAGRIEDARRLINGM---PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY+I +D  CK     +++ L   +R   CE DI  Y+ LI+ +C  G ++ AL
Sbjct: 282 CSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEAL 341

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  +LP      D VTY+ ++  L    +  +  +L  +M  N  AP+ +TF T++   
Sbjct: 342 NILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSL 401

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +     + IE++  M E   + D    S ++D L
Sbjct: 402 CQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGL 436



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 100/219 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    I  AL ++ +ML +G  P VV ++ L     +     +A  L DEM+  G
Sbjct: 257 LIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKG 316

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + I+ +C  G + E++ +   L    C+ D   Y+ ++  LC S R +   
Sbjct: 317 CEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVE 376

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       D VT++ ++  L   G +D+A ++   M E+    +++T+ +++ G 
Sbjct: 377 ELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGL 436

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +      +ELL ++K     PD    + V+  L   E
Sbjct: 437 CDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTE 475



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK      A+ L  EM +KG +PD+V +N L   +     V+ A  +   +   
Sbjct: 291 ILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSH 350

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT  +  LC +    E  EL   +    C  D   ++ ++  LC+ G ++ A
Sbjct: 351 GCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRA 410

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +     VAD+VTYS ++ GL + G++D A +L   ++     P+ I + T++ G
Sbjct: 411 IEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKG 470

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +  +  EL+ +M   +  PD    + VV  L +
Sbjct: 471 LCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ 508



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 33/249 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C    I+ A+ L S++ S G KPD+V  NTL  GL  + + E A +L   M R  
Sbjct: 537 IIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSN 596

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
              D  T+   I  LC+ G + +++E  + +    C                        
Sbjct: 597 CPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAAL 656

Query: 98  EL---------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           EL         D+  Y+ +I  L K+G++E AL+L   +    L  D  TY  + +G+  
Sbjct: 657 ELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCR 716

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +   D+A  +   +++  ++P+   +  ++ GF R       I+    M     MPD S 
Sbjct: 717 EDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDEST 776

Query: 209 VSIVVDLLA 217
             I+++ LA
Sbjct: 777 YVILLEALA 785



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 6/218 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   C +  +  A  +++ +   G    VV +NT+  G     ++E A +L + M   
Sbjct: 192 ILIKRLCSDGRVSDAERVFAAL---GPSATVVTYNTMVNGYCRAGRIEDARRLINGMP-- 246

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               DT T+   I  LC  G I +++ +F  +    C   +  YS L+D  CK      A
Sbjct: 247 -FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQA 305

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +       D+VTY+++I+ + N+G +D+A ++  ++  +   P+ +T+  ++  
Sbjct: 306 MALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKS 365

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   +V ELL +M   N  PD    + +V  L +
Sbjct: 366 LCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQ 403



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 8/212 (3%)

Query: 11  EIEGALNLYSEMLSKGIK--PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           EI+ AL L+  M S G +  P VV  N L   L    +V  A ++F  +   G +A   T
Sbjct: 165 EIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL---GPSATVVT 221

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y   ++G C+ G I ++  L   +       D   ++ LI  LC  GR+  AL +F  + 
Sbjct: 222 YNTMVNGYCRAGRIEDARRLINGMPFPP---DTFTFNPLIRALCVRGRIPDALAVFDDML 278

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                  VVTYSI++     +    +A  L  +M      P+++T+  LI+      +  
Sbjct: 279 HRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVD 338

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + + +L  +      PDA   + V+  L  +E
Sbjct: 339 EALNILSNLPSHGCKPDAVTYTPVLKSLCGSE 370



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++   K  + + AL L S M +    PD++ +NT+   L +  ++E A  L   M  +
Sbjct: 641 IVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSN 698

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  DT TY     G+C+      +V + R ++      D   Y+ ++ G C+  R ++A
Sbjct: 699 GLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLA 758

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           ++ F  +     + D  TY I++  L   G +D+A  L   +
Sbjct: 759 IDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASL 800


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 36/262 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+ K   I+ AL +Y EM   G+ P+VV + +L  G  + ++++ A K  DEM+  G
Sbjct: 575 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 634

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF----------------------RTLRILKCEL 99
           +  D   Y+  IDG CK   +  + +LF                      R L  ++  L
Sbjct: 635 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 694

Query: 100 -------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+  Y+ LIDGL K GRL  A +L+  +    +V D++T+ ++++GL
Sbjct: 695 VWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 754

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N GQ++ A  +  +M+   + P+V+ + TLI G+ R     +   L  +M ++ ++PD 
Sbjct: 755 CNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDD 814

Query: 207 SIVSIVVDLLAKNEISLNSLPS 228
               I+++   K + SL S PS
Sbjct: 815 VTYDILINGKFKGDRSL-SRPS 835



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C +  IE A  LY++M   GI P V   N+L  G  +    E A KLFDE    
Sbjct: 365 VLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDC 424

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+  TY I +  LCK G + E+  L   +       ++ +Y+ +I G C+ G +++A
Sbjct: 425 GV-ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMA 483

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L  +VVTYSI+I G +  G  +KA DLF  M    +AP   TF T+I+G
Sbjct: 484 SSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIING 543

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ + S+  + L    E+  +P     + +VD   K
Sbjct: 544 LCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK 581



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  + E AL+L+ +MLS  I P     NT+  GL ++ Q+  A         +
Sbjct: 504 ILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 563

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   +DG  K G I  ++ ++R +       ++  Y+ LI+G CKS R+++A
Sbjct: 564 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 623

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+    +    L  DV  YS +I G      M+ A DLF ++ E  ++PN I + ++I G
Sbjct: 624 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 683

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F  +N     +    KM    +  D    + ++D L K
Sbjct: 684 FRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 721



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 123/267 (46%), Gaps = 38/267 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  ++  A +     L +G  P  + +N++  G  +   ++ A  ++ EM   G
Sbjct: 540 IINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFG 599

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TYT  I+G CK+  I  +++    +R    ELD+ AYS LIDG CK   +E A 
Sbjct: 600 VSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQ 659

Query: 122 ELFHSL------PRGV-----------------------------LVADVVTYSIMIHGL 146
           +LF  L      P  +                             +  D+ TY+ +I GL
Sbjct: 660 DLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGL 719

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++  A DL+++M    + P++ITF  L++G     +     ++L +M  KN+ P  
Sbjct: 720 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPS- 778

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHE 233
             V I   L+A      N   +FT+H+
Sbjct: 779 --VLIYNTLIAGYFREGNLKEAFTLHD 803



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 117/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK  +++ A +L   M+++G+ P+VV +N + +G      ++ A  +F +M   
Sbjct: 434 IMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLAR 493

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TY+I IDG  K G   ++++LF  +  L        ++ +I+GLCK G++  A
Sbjct: 494 DLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEA 553

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +   +      +   +TY+ ++ G   +G +D A  ++ +M E  V+PNV+T+ +LI+G
Sbjct: 554 RDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLING 613

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F + N     ++   +M+EK +  D +  S ++D   K
Sbjct: 614 FCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCK 651



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++    K   +E A   + E   +G+K D   ++ +   + +        +L +EM+  
Sbjct: 225 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+T  I      G +VE++ L   +      +++   + L+ G C  G L+ A
Sbjct: 285 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF+ +    L  + VTYS++I G  N G ++KA +L+  M+ N + P+V    +L+ G
Sbjct: 345 LNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRG 404

Query: 181 FIR 183
           +++
Sbjct: 405 YLK 407



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 100/248 (40%), Gaps = 34/248 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I   CK       L L  EM  +G  P      ++ +       +  A +L +EM   
Sbjct: 260 IIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINC 319

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +    T  + G C  G +  ++ LF  +       +   YS LI+G C SG +E A
Sbjct: 320 GKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKA 379

Query: 121 LELF---------------HSLPRGVL-------------------VADVVTYSIMIHGL 146
            EL+               +SL RG L                   VA++ TY+IM+  L
Sbjct: 380 SELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWL 439

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+MD+A  L  +M    + PNV+++  +I G  R         +   M  +++ P+ 
Sbjct: 440 CKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNV 499

Query: 207 SIVSIVVD 214
              SI++D
Sbjct: 500 VTYSILID 507



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N Y +   IE A++ ++ M+ + + P V   N L   L   + +     L+++M   G
Sbjct: 156 LLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T  + +    K G + E+ E FR  +    +LD  AYS +I  +CK     + L
Sbjct: 216 IYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGL 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     V    T++ +I      G M +A  L  +M       N++   +L+ G+
Sbjct: 276 ELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGY 335

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                    + L +K+ E  + P+    S++++
Sbjct: 336 CAQGNLDSALNLFNKITEDGLFPNKVTYSVLIE 368



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG C   ++E A  +  EM  K + P V+I+NTL  G F    ++ AF L DEM   
Sbjct: 749 VLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDR 808

Query: 61  GVAADTRTYTIFIDG 75
           G+  D  TY I I+G
Sbjct: 809 GLVPDDVTYDILING 823



 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 38/161 (23%)

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSL------P----------------------- 128
           ELD + ++ L++   ++ R+E A++ F+++      P                       
Sbjct: 147 ELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRD 206

Query: 129 -------RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                  RG+   D  T  +M+     +G++++A + F + +E  V  +   +  +I   
Sbjct: 207 LYNKMVLRGIY-GDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAV 265

Query: 182 IRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEI 221
            +    +  +ELL +MKE+  +P +A+  S++V  +A+  +
Sbjct: 266 CKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNM 306


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 118/213 (55%), Gaps = 1/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++  Y + ++++ A+  ++ M    + P++V  N L   L +   V +A ++F+ M RD
Sbjct: 137 IVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM-RD 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D++TY+I ++G  K   + ++ E+FR +    C  DI  YS ++D LCK+GR++ A
Sbjct: 196 RFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEA 255

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +  S+   +       YS+++H    + ++++A D FL+ME + +  +V  F +LI  
Sbjct: 256 LGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGA 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F + N    V  +L +MK K V P++   +I++
Sbjct: 316 FCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 348



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y     +E A++ + EM   G+K DV + N+L     + ++++  +++  EM+  
Sbjct: 276 VLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSK 335

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  ++++  I +  L + G   E+ ++FR + I  CE D   Y+ +I   C+   +E A
Sbjct: 336 GVTPNSKSCNIILRHLIERGEKDEAFDVFRKM-IKVCEPDADTYTMVIKMFCEKKEMETA 394

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +++  + +  +   + T+S++I+GL  +    KA  L  +M E  + P+ +TFG L   
Sbjct: 395 DKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQL 454

Query: 181 FIRINEPSKVIELLHK 196
            I+  E   V++ L++
Sbjct: 455 LIK-EEREDVLKFLNE 469



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK+K +  A  ++  M  +   PD   ++ L  G  +   + +A ++F EM   G
Sbjct: 173 LLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG 231

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I +D LCK G + E++ + R++    C+     YS L+       RLE A+
Sbjct: 232 CHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAV 291

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + R  + ADV  ++ +I       +M   + +  +M+   V PN  +   ++   
Sbjct: 292 DTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHL 351

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I   E  +  ++  KM  K   PDA   ++V+ +  + +
Sbjct: 352 IERGEKDEAFDVFRKMI-KVCEPDADTYTMVIKMFCEKK 389



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK   ++ AL +   M     KP   I++ L       +++E A   F EM+R 
Sbjct: 241 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 300

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE-LDIQAYSC--LIDGLCKSGRL 117
           G+ AD   +   I   CK   +     ++R L+ +K + +   + SC  ++  L + G  
Sbjct: 301 GMKADVAVFNSLIGAFCKANRMKN---VYRVLKEMKSKGVTPNSKSCNIILRHLIERGEK 357

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A ++F  + + V   D  TY+++I       +M+ A  ++  M +  V P++ TF  L
Sbjct: 358 DEAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVL 416

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I+G        K   LL +M E  + P       +  LL K E
Sbjct: 417 INGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEE 459



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 80/171 (46%), Gaps = 2/171 (1%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           +I Q +  + L + M++  +  +  T+ I +    +   + E++  F  +       ++ 
Sbjct: 110 KIRQYKLMWDLINAMRKKKML-NVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLV 168

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           A++ L+  LCKS  +  A E+F ++ R     D  TYSI++ G   +  + KA ++F +M
Sbjct: 169 AFNGLLSALCKSKNVRKAQEVFENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREM 227

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    P+++T+  ++    +     + + ++  M      P   I S++V
Sbjct: 228 IDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLV 278


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 117/219 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +  +   E    ++ E++ +G KPD+ + NT    +F+  +VE+   +F++++  G
Sbjct: 499 LIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYG 558

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R+Y+I I GL K G   E+  +F  ++     LD +AY+ ++DG CKSG++  A 
Sbjct: 559 FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAY 618

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +   V TY  ++ GL    ++D+A+ LF + +   +  NV+ + +LI GF
Sbjct: 619 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 678

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   +L +M +K + P+    + ++D L K E
Sbjct: 679 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAE 717



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK +++E A  ++     +G  PD V + +L  GL +  QV+ A++LF++M   
Sbjct: 428 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 487

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+   YT  I     +G   +  ++F+ L    C+ D+   +  +D + K+G +E  
Sbjct: 488 GHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 547

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     + DV +YSI+IHGL   GQ  +  ++F  M++   A +   +  ++ G
Sbjct: 548 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDG 607

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  K  E+L +MKEK V P  +    +VD LAK
Sbjct: 608 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 645



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 21/245 (8%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K   ++ A  L+ E  SKGI+ +VV++++L  G  ++ +++ A+ + +EM + G
Sbjct: 639 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 698

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ +KC  +   YS LI+GLC+  +   A 
Sbjct: 699 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 758

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  LV +VVTY+ MI GL   G +  A+ LF   + N   P+  +F  LI G 
Sbjct: 759 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 818

Query: 182 --------------------IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
                                RIN  S  I LL  + +   +  A+IV  V+  +AK++ 
Sbjct: 819 SNANRAMEAYQVFEETRLRGCRINIKS-CISLLDALNKSECLEQAAIVGAVLREIAKSQH 877

Query: 222 SLNSL 226
           +  SL
Sbjct: 878 ASRSL 882



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 117/228 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+CK+ ++  A  +  EM  K ++P V  +  +  GL +I +++ A+ LF+E +  G
Sbjct: 604 VVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKG 663

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   +       ++  ++ L+D L K+  +  AL
Sbjct: 664 IELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 723

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       +  TYSI+I+GL    + +KA   + DM++  + PNV+T+ T+I G 
Sbjct: 724 VCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 783

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            ++   +    L  + K    +PDA+  + +++ ++    ++ +   F
Sbjct: 784 AKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVF 831



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  E+E    ++ ++ S G  PDV  ++ L  GL +  Q      +F  M
Sbjct: 530 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 589

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           ++ G A D R Y   +DG CK+G + ++ E+   ++    +  +  Y  ++DGL K  RL
Sbjct: 590 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRL 649

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       +  +VV YS +I G    G++D+A+ +  +M +  + PNV T+ +L
Sbjct: 650 DEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 709

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E ++ +     MKE    P+    SI+++ L +
Sbjct: 710 LDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCR 750



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K  +++ A  L+ +ML  G   + V++ +L    F   + E   K+F E+ R G
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D      ++D + K G + +   +F  +R      D+++YS LI GL K+G+     
Sbjct: 524 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 583

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH++ +     D   Y+ ++ G    G++ KA+++  +M+E  V P V T+G ++ G 
Sbjct: 584 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 643

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  + S ++D   K
Sbjct: 644 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 680



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  +     N++  M  +G   D   +N +  G  +  +V +A+++ +EM+  
Sbjct: 568 ILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK 627

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     TY   +DGL K   + E+  LF   +    EL++  YS LIDG  K GR++ A
Sbjct: 628 CVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEA 687

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  L  +V T++ ++  L    ++++A   F  M+E    PN  T+  LI+G
Sbjct: 688 YLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILING 747

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ + +K       M+++ ++P+    + ++  LAK
Sbjct: 748 LCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 785



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 97/216 (44%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
            +P    +  L   L E  + ERA +L  +MQ  G       +T  +  L + G + +++
Sbjct: 175 FRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADAL 234

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++    E DI  Y+  ID   K+G +++A + FH L    L  D V+Y+ MI  L
Sbjct: 235 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVL 294

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++ +A +LF  ME     P    + T+I G+          +LL +++E+  +P  
Sbjct: 295 CKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSV 354

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESN 242
              + ++  L K      +L  F V ++  E + S 
Sbjct: 355 VSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSST 390



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 36/247 (14%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K ++++ AL+L+ E++ K  +P+   +N +   L    +VE A+++ DEM+   +  +  
Sbjct: 366 KKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLL 424

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I +D LCK   + E+ ++F +     C  D   Y  LIDGL K G+++ A  LF  +
Sbjct: 425 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 484

Query: 128 PRGVLVADVVTYS-----IMIHG------------------------------LYNDGQM 152
                 A+ V Y+       IHG                              ++  G++
Sbjct: 485 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEV 544

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           +K   +F D+      P+V ++  LIHG  +  +  +   + H MK++    DA   + V
Sbjct: 545 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 604

Query: 213 VDLLAKN 219
           VD   K+
Sbjct: 605 VDGFCKS 611



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI    + +  E AL L  +M   G +  V +  TL   L    QV  A  L DE++  
Sbjct: 184 VLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGS 243

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y + ID   K G +  + + F  L+    + D  +Y+ +I  LCK+GRL  A
Sbjct: 244 CLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEA 303

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +     V     Y+ MI G  + G+ + A+ L   + E    P+V++F +++  
Sbjct: 304 EELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTC 363

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  +  + + L   MK K+  P++S  +I++D+L
Sbjct: 364 LGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDML 398



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 66/120 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+ ++   A   + +M  +G+ P+VV + T+  GL ++  +  A+ LF+  + +
Sbjct: 743 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 802

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  ++   I+G+      +E+ ++F   R+  C ++I++   L+D L KS  LE A
Sbjct: 803 GGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQA 862



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 72/167 (43%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           K+ +EM   G     +        L +   + ++V     +R LK      AY+ LI  L
Sbjct: 130 KVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGAL 189

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            ++ R E ALEL   +        V  ++ ++  L  +GQ+  A  L  +++ + + P++
Sbjct: 190 AEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDI 249

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +   I  F +        +  H++K + + PD    + ++ +L K
Sbjct: 250 VLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCK 296


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G+CK  ++  A++++S+M S G+ P+    NTL +GL EI Q+  A KLF EMQ  
Sbjct: 30  VLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAG 89

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                + ++ I + G    G    ++E F+ ++    E D+++Y  L+  L  SGR+  A
Sbjct: 90  PFLPTSASHNILLRGFFMAG---RAIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEA 146

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF ++       D++TY++++ G    GQ  +A  L  ++ +    PNV T+  +I+ 
Sbjct: 147 HALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINC 203

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
           + ++++  +  E+  KM E N +P+A   + ++    K  +  +++  F   E+
Sbjct: 204 YCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEK 257



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 41/239 (17%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN YCK  ++E A  ++ +M+     P+ V  NTL  G  +   +E A KLF EM++ 
Sbjct: 199 IIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI 258

Query: 61  GVAADTRTYTIFIDGLCKN-GYIVESVELFRTL--------------------------- 92
           G  A   TY   ID LCK  G +  +V+LF  L                           
Sbjct: 259 GCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGL 318

Query: 93  RIL------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           R+L       C+ D+  Y+CLI GLC + R+E A  LF+ +       +V T++ +I GL
Sbjct: 319 RLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM---ACAPNVTTFNFLIRGL 375

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               ++++A ++   M     AP++ TF T+I  F +        E++  M +    P+
Sbjct: 376 CAQKKVEEARNILDRM----TAPDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPN 430



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GYCK  +   A +L  E+L  G +P+V  ++ +     ++ +VE A+++F +M   
Sbjct: 164 VLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIES 223

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS-GRLEI 119
               +  T+   I G CK G + ++++LF  +  + C+  I  Y+ LID LCK  G +  
Sbjct: 224 NCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYT 283

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD---LFLDMEENAVAPNVITFGT 176
           A++LF+ L    L   +VTY+ +I G       ++A+D   L   M      P+VIT+  
Sbjct: 284 AVDLFNKLEGAGLTPTIVTYNSLIQGFS-----ERANDGLRLLCHMHAEGCKPDVITYNC 338

Query: 177 LIHGFIRINEPSKVIELLHKM 197
           LI G    N       L + M
Sbjct: 339 LISGLCSANRVEDAQRLFNGM 359



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 8/207 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++    +  +  A  L+S M      PD++ +N L  G  +I Q   A  L  E+ + 
Sbjct: 132 ILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 188

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY+I I+  CK   + E+ E+F  +    C  +   ++ LI G CK+G LE A
Sbjct: 189 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 248

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYND-GQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           ++LF  + +    A +VTY+ +I  L    G +  A DLF  +E   + P ++T+ +LI 
Sbjct: 249 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 308

Query: 180 GFI-RINEPSKVIELLHKMKEKNVMPD 205
           GF  R N+    + LL  M  +   PD
Sbjct: 309 GFSERANDG---LRLLCHMHAEGCKPD 332



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 35/203 (17%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107
           ++A +LF E+     A +  TY + I G CK G + ++V +F  ++      +    + L
Sbjct: 7   DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL 66

Query: 108 IDGLCKSGRLEIALELFHS------LP---------RGVLVA-----------------D 135
           + GLC+ G++  AL+LF        LP         RG  +A                 D
Sbjct: 67  LLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVEPD 126

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           + +Y I++  L + G+M +AH LF  M     +P+++T+  L+ G+ +I +  +   L+ 
Sbjct: 127 LESYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMK 183

Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
           ++ +    P+    SI+++   K
Sbjct: 184 EILKAGYEPNVFTYSIIINCYCK 206



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+  ++     L L   M ++G KPDV+ +N L  GL   ++VE A +LF+ M    
Sbjct: 306 LIQGF--SERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM---A 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  T+   I GLC      + VE  R +       D+  ++ +I   CK+G +  A 
Sbjct: 361 CAPNVTTFNFLIRGLCAQ----KKVEEARNILDRMTAPDMTTFNTIILAFCKAGAMHDAR 416

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL 146
           E+   + +     +  T   + HG+
Sbjct: 417 EVMKDMLKHGFYPNTYTTYALAHGI 441


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 112/203 (55%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++ E++ +G KPD+ + NT    +F+  +VE+   +F++++  G   D R+Y+I I GL 
Sbjct: 381 VFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLT 440

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G   E+  +F  ++     LD +AY+ ++DG CKSG++  A E+   +    +   V 
Sbjct: 441 KAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVA 500

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY  ++ GL    ++D+A+ LF + +   +  NV+ + +LI GF ++    +   +L +M
Sbjct: 501 TYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM 560

Query: 198 KEKNVMPDASIVSIVVDLLAKNE 220
            +K + P+    + ++D L K E
Sbjct: 561 MKKGLTPNVYTWNSLLDALVKAE 583



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK +++E A  ++     +G  PD V + +L  GL +  QV+ A++LF++M   
Sbjct: 294 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+   YT  I     +G   +  ++F+ L    C+ D+   +  +D + K+G +E  
Sbjct: 354 GHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 413

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     + DV +YSI+IHGL   GQ  +  ++F  M++   A +   +  ++ G
Sbjct: 414 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDG 473

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  K  E+L +MKEK V P  +    +VD LAK
Sbjct: 474 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 511



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 121/232 (52%), Gaps = 1/232 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+CK+ ++  A  +  EM  K ++P V  +  +  GL +I +++ A+ LF+E +  G
Sbjct: 470 VVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   +       ++  ++ L+D L K+  +  AL
Sbjct: 530 IELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       +  TYSI+I+GL    + +KA   + DM++  + PNV+T+ T+I G 
Sbjct: 590 VCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
            ++   +    L  + K    +PDA+  + +++ ++    ++ +  + TV++
Sbjct: 650 AKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQT-TVYQ 700



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  E+E    ++ ++ S G  PDV  ++ L  GL +  Q      +F  M
Sbjct: 396 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 455

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           ++ G A D R Y   +DG CK+G + ++ E+   ++    +  +  Y  ++DGL K  RL
Sbjct: 456 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRL 515

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       +  +VV YS +I G    G++D+A+ +  +M +  + PNV T+ +L
Sbjct: 516 DEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 575

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E ++ +     MKE    P+    SI+++ L +
Sbjct: 576 LDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCR 616



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K  +++ A  L+ +ML  G   + V++ +L    F   + E   K+F E+ R G
Sbjct: 330 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D      ++D + K G + +   +F  +R      D+++YS LI GL K+G+     
Sbjct: 390 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH++ +     D   Y+ ++ G    G++ KA+++  +M+E  V P V T+G ++ G 
Sbjct: 450 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  + S ++D   K
Sbjct: 510 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 546



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  +     N++  M  +G   D   +N +  G  +  +V +A+++ +EM+  
Sbjct: 434 ILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK 493

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     TY   +DGL K   + E+  LF   +    EL++  YS LIDG  K GR++ A
Sbjct: 494 CVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEA 553

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  L  +V T++ ++  L    ++++A   F  M+E    PN  T+  LI+G
Sbjct: 554 YLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILING 613

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ + +K       M+++ ++P+    + ++  LAK
Sbjct: 614 LCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 651



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 97/216 (44%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
            +P    +  L   L E  + ERA +L  +MQ  G       +T  +  L + G + +++
Sbjct: 41  FRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADAL 100

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++    E DI  Y+  ID   K+G +++A + FH L    L  D V+Y+ MI  L
Sbjct: 101 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVL 160

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++ +A +LF  ME     P    + T+I G+          +LL +++E+  +P  
Sbjct: 161 CKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSV 220

Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESN 242
              + ++  L K      +L  F V ++  E + S 
Sbjct: 221 VSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSST 256



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 36/247 (14%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K ++++ AL+L+ E++ K  +P+   +N +   L    +VE A+++ DEM+   +  +  
Sbjct: 232 KKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLL 290

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I +D LCK   + E+ ++F +     C  D   Y  LIDGL K G+++ A  LF  +
Sbjct: 291 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 350

Query: 128 PRGVLVADVVTYS-----IMIHG------------------------------LYNDGQM 152
                 A+ V Y+       IHG                              ++  G++
Sbjct: 351 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEV 410

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           +K   +F D+      P+V ++  LIHG  +  +  +   + H MK++    DA   + V
Sbjct: 411 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 470

Query: 213 VDLLAKN 219
           VD   K+
Sbjct: 471 VDGFCKS 477



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI    + +  E AL L  +M   G +  V +  TL   L    QV  A  L DE++  
Sbjct: 50  VLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGS 109

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y + ID   K G +  + + F  L+    + D  +Y+ +I  LCK+GRL  A
Sbjct: 110 CLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEA 169

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +     V     Y+ MI G  + G+ + A+ L   + E    P+V++F +++  
Sbjct: 170 EELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTC 229

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  +  + + L   MK K+  P++S  +I++D+L
Sbjct: 230 LGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDML 264



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 47/87 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+ ++   A   + +M  +G+ P+VV + T+  GL ++  +  A+ LF+  + +
Sbjct: 609 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 668

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVE 87
           G   D  ++   I+G+      +E+ +
Sbjct: 669 GGIPDAASFNALIEGMSNANRAMEAYQ 695


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 16/233 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K +++  A  L+  ML +G KP+VV +  L  G  +  Q+++A +++  MQ D 
Sbjct: 529 LIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDI 588

Query: 62  VAADTR----------------TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            ++D                  TY   +DGLCK   + E+ EL  T+ +  CE +   Y 
Sbjct: 589 ESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYD 648

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK+G+LE A E+F  +       ++ TYS +I+ L+ + ++D    +   M EN
Sbjct: 649 ALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLEN 708

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  PNV+ +  +I G  ++ +  +   L+ KM+E    P+    + ++D   K
Sbjct: 709 SCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGK 761



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 16/234 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK   I+ A N + EML     P+VV + +L     +  +V  A KLF+ M  +
Sbjct: 493 ILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLE 552

Query: 61  GVAADTRTYTIFIDGLCKNGYI-------------VES--VELFRTLRILKCEL-DIQAY 104
           G   +  TYT  IDG CK G I             +ES  ++++  L    CE  +I  Y
Sbjct: 553 GSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITY 612

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             L+DGLCK+ R+E A EL  ++       + + Y  +I G    G+++ A ++F+ M E
Sbjct: 613 GALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSE 672

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               PN+ T+ +LI+   +      V+++L KM E +  P+  I + ++D L K
Sbjct: 673 RGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK 726



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  +  EM+SKG  PD   ++ +   L +  +VE+AF LF+EM+++G+    
Sbjct: 429 CGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSV 488

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++   F  +    C  ++  Y+ LI    K+ ++  A +LF  
Sbjct: 489 YTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEM 548

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAH---------------DLFLDMEENAV-APN 170
           +       +VVTY+ +I G    GQ+DKA                D++  +++N    PN
Sbjct: 549 MLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPN 608

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +IT+G L+ G  + N   +  ELL  M      P+  +   ++D   K
Sbjct: 609 IITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCK 656



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 113/213 (53%), Gaps = 2/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  ++E A  ++ +M  +G  P++  +++L   LF+  +++   K+  +M  + 
Sbjct: 650 LIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENS 709

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   YT  IDGLCK G   E+  L   +  + C  ++  Y+ +IDG  K G++E  L
Sbjct: 710 CTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCL 769

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  +       + +TY ++I+   + G +D+AH L  +M++     ++ ++  +I GF
Sbjct: 770 ELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF 829

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R  E    I LL ++ E   +P  S+  I++D
Sbjct: 830 NR--EFITSIGLLDELSENESVPVESLYRILID 860



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   +E A  L   M   G +P+ ++++ L  G  +  ++E A ++F +M   G
Sbjct: 615 LVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERG 674

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  I+ L K   +   +++   +    C  ++  Y+ +IDGLCK G+ E A 
Sbjct: 675 YCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAY 734

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       +V+TY+ MI G    G++++  +L+ DM     APN IT+  LI+  
Sbjct: 735 RLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHC 794

Query: 182 IRINEPSKVIELLHKMKE 199
                  +   LL +MK+
Sbjct: 795 CSTGLLDEAHRLLDEMKQ 812



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 4/194 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  +IE  L LY +M SKG  P+ + +  L         ++ A +L DEM++  
Sbjct: 755 MIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTY 814

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   I+G   N   + S+ L   L   +       Y  LID   K+GRLE AL
Sbjct: 815 WPRHISSYRKIIEGF--NREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGAL 872

Query: 122 ELFH--SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L    S    + VA+   Y+ +I  L +  ++DKA +L+  M    V P + TF  LI 
Sbjct: 873 NLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIK 932

Query: 180 GFIRINEPSKVIEL 193
           G  R+ +  + ++L
Sbjct: 933 GLTRVGKWQEALQL 946



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            LI   C+N     AL     +   G K     +N L        +++ AF +  EM   
Sbjct: 175 FLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNS 234

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T   F   LCK G   +++ L      +    D   Y+ ++ GLC++   + A
Sbjct: 235 GFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFVP---DTVFYNRMVSGLCEASLFQEA 291

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   +     + +VVTY I++ G    GQ+ +   +   M      PN   F +L+H 
Sbjct: 292 MDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHA 351

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +  + S   +L  KM +    P   + +I +  +  NE
Sbjct: 352 YCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNE 391



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 41/244 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN   K K ++  L + S+ML     P+VVI+  +  GL ++ + E A++L  +M+  G
Sbjct: 685 LINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVG 744

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  IDG  K G I + +EL+R +    C  +   Y  LI+  C +G L+ A 
Sbjct: 745 CYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAH 804

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYND-------------------------------- 149
            L   + +      + +Y  +I G   +                                
Sbjct: 805 RLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIK 864

Query: 150 -GQMDKAHDLFLDMEENAVAP-----NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            G+++ A +L   +EE + +P     N   + +LI      ++  K  EL   M  KNV+
Sbjct: 865 AGRLEGALNL---LEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVV 921

Query: 204 PDAS 207
           P+ S
Sbjct: 922 PELS 925



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 24/220 (10%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G     ++     + S M+++G  P+  + N+L     +      A+KLF +M + 
Sbjct: 312 ILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKC 371

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID----------- 109
           G       Y IFI  +C N  +  S  L         EL  +AYS ++D           
Sbjct: 372 GCQPGYLLYNIFIGSICSNEELPGSDLL---------ELAEKAYSEMLDLGVVLNKVNVS 422

Query: 110 ----GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
                LC +G+ + A E+   +     V D  TYS +I  L +  +++KA  LF +M++N
Sbjct: 423 NFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKN 482

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
            + P+V T+  LI  F +     +      +M   N  P+
Sbjct: 483 GIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPN 522



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+    + A+++   M S    P+VV +  L  G     Q+ R  ++   M  +G
Sbjct: 278 MVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEG 337

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK------SG 115
              +   +   +   CK+     + +LF+ +    C+     Y+  I  +C       S 
Sbjct: 338 CYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSD 397

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            LE+A + +  +    +V + V  S     L   G+ DKA ++  +M      P+  T+ 
Sbjct: 398 LLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYS 457

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I      ++  K   L  +MK+  ++P     +I++D   K
Sbjct: 458 KVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCK 500



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 12/198 (6%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           PD V +N +  GL E    + A  + D M+      +  TY I + G    G +     +
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRI 329

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +    C  + + ++ L+   CKS     A +LF  + +       + Y+I I  + +
Sbjct: 330 LSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICS 389

Query: 149 DGQM---------DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           + ++         +KA+   LD+       NV  F   + G  + +   K  E++ +M  
Sbjct: 390 NEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFD---KAFEIICEMMS 446

Query: 200 KNVMPDASIVSIVVDLLA 217
           K  +PD S  S V+  L 
Sbjct: 447 KGFVPDDSTYSKVIGFLC 464



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNT-LFIGLFE----IHQVERAFKLFD 55
           ILI+ + K   +EGALNL  E+ S    P + + N  L+  L E      +V++AF+L+ 
Sbjct: 857 ILIDNFIKAGRLEGALNLLEEISS---SPSLAVANKYLYTSLIESLSHASKVDKAFELYA 913

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
            M    V  +  T+   I GL + G   E+++L  ++  + C +
Sbjct: 914 SMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQMVCHV 957


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 14/208 (6%)

Query: 1   ILINGYCKN-----------KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVER 49
           IL++  CK+           K ++ ALNL++EM     KP+ V +NTL  G  +  ++  
Sbjct: 392 ILVDALCKDGKIKEAKNVIIKMVDEALNLFTEM---HCKPNTVSYNTLIDGFCKSGRLSH 448

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A+KL D+M+  G   +  TY   +  LCKN ++ +++ L    +    + D+  Y+ L+D
Sbjct: 449 AWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNTLVD 508

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           GLCK GRL+ A  +F  L          TY+IMI+GL  +G +D+A  L   ME+N   P
Sbjct: 509 GLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNGCIP 568

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKM 197
           +V+T+ T+IH     +E  K  +L+ ++
Sbjct: 569 DVVTYQTIIHALFEKDENDKAEKLVREL 596



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 115/263 (43%), Gaps = 58/263 (22%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK+K +  A  LYSEM+ K I P VV                +AF LF EM    
Sbjct: 337 VIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTF--------------KAFSLFHEMVLKN 382

Query: 62  VAADTRTYTIFIDGLCKNGYIVESV--------ELFRTLRILKCELDIQAYSCLIDGLCK 113
           +  +  T+ I +D LCK+G I E+         E       + C+ +  +Y+ LIDG CK
Sbjct: 383 INPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCK 442

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           SGRL  A +L   +       +V+TY+ ++H L  +  +DKA  L  + ++  + P++ T
Sbjct: 443 SGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHT 502

Query: 174 FGTLIHGFIR------------------INEPSKVIE-----------------LLHKMK 198
           + TL+ G  +                   N P+                     LL KM+
Sbjct: 503 YNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKME 562

Query: 199 EKNVMPD-ASIVSIVVDLLAKNE 220
           +   +PD  +  +I+  L  K+E
Sbjct: 563 DNGCIPDVVTYQTIIHALFEKDE 585



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 29/212 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF------------IGLFEIHQVE 48
           ILING CK  +   AL +  ++  K +  +VV+++T+              GL+    V+
Sbjct: 301 ILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVK 360

Query: 49  R---------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV--------ELFRT 91
           R         AF LF EM    +  +  T+ I +D LCK+G I E+         E    
Sbjct: 361 RIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNL 420

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
              + C+ +  +Y+ LIDG CKSGRL  A +L   +       +V+TY+ ++H L  +  
Sbjct: 421 FTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHH 480

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +DKA  L  + ++  + P++ T+ TL+ G  +
Sbjct: 481 VDKAIALVNNFKDQGIQPDMHTYNTLVDGLCK 512



 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 41/252 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C N ++  AL  +  +L+ G   + V +  L  GL ++ Q   A ++  +++   
Sbjct: 267 LIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKL 326

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSC------------ 106
           V  +   Y+  IDGLCK+  ++++  L+  +   RI    +  +A+S             
Sbjct: 327 VNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKNINPN 386

Query: 107 ------LIDGLCKSGRL-----------EIALELF---HSLPRGVLVADVVTYSIMIHGL 146
                 L+D LCK G++           + AL LF   H  P      + V+Y+ +I G 
Sbjct: 387 VYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKP------NTVSYNTLIDGF 440

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++  A  L   M +    PNVIT+ +L+H   + +   K I L++  K++ + PD 
Sbjct: 441 CKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDM 500

Query: 207 SIVSIVVDLLAK 218
              + +VD L K
Sbjct: 501 HTYNTLVDGLCK 512



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 29/204 (14%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L+L ++M SKG+KPD+   + L    +        FK+       G   +T T T  I G
Sbjct: 226 LSLSTQMESKGVKPDLFTLSILINCYY--------FKM-------GYEPNTITLTTLIKG 270

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           LC NG + E++     +  L   L+   Y  LI+GLCK G+   AL++   +   ++  +
Sbjct: 271 LCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTN 330

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VV YS +I GL  D  +  A+ L+ +M    + P V+TF              K   L H
Sbjct: 331 VVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTF--------------KAFSLFH 376

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
           +M  KN+ P+    +I+VD L K+
Sbjct: 377 EMVLKNINPNVYTFNILVDALCKD 400



 Score = 37.4 bits (85), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 134 ADVVTYSIMIHGLYNDGQMDKA---HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            + +T + +I GL  +G++++A   HD  L +       N +T+G LI+G  ++ +    
Sbjct: 259 PNTITLTTLIKGLCLNGKVNEALLFHDHVLAL---GFHLNHVTYGILINGLCKMGQTRAA 315

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
           +++L +++ K V  +  + S V+D L K+++ +++
Sbjct: 316 LQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDA 350


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NGYCK   +  AL     M   G+ P++VI N+L  G  +I   +   +    M+  
Sbjct: 274 IIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEY 333

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T++  ++     G + +  E+F  +     E DI A+S L  G  ++G  E A
Sbjct: 334 GVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENA 393

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +  S+ +  +  +VV  + +I G  + G+M+ A  ++  M E  ++PN+ TF TLI G
Sbjct: 394 ESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWG 453

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    +P K  ELL  M+EK V P+ S + +V D
Sbjct: 454 YAEARQPGKAEELLQLMEEKGVFPEKSTIQLVAD 487



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  +C  K IE A N+  +M++ GI+PDVV +N L     +  +  RA  L  EMQ +
Sbjct: 204 ILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYE 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG---LCKSGRL 117
            VA + RT  I ++G CK G ++E++     ++ L    ++  ++ LI G   +  +  +
Sbjct: 264 KVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGV 323

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + AL L      GV   DV+T+S +++   + G MDK  ++F DM +  + P++  F  L
Sbjct: 324 DEALTLMEEY--GV-KPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSIL 380

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             G++R  E      +L  M +  V P+  I + ++ 
Sbjct: 381 AKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIIS 417



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    K K  E    L S++   G+KPD +++N +     E   V+ A K+F +M+  G
Sbjct: 99  LVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTG 158

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIA 120
               T T+   I G    G   E +++   + +    + + + Y+ L+   C    +E A
Sbjct: 159 CKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEA 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             + H +    +  DVVTY+I+       G+  +A DL L+M+   VAPN  T G +++G
Sbjct: 219 WNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNG 278

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           + +     + +  +++MKE  V P+
Sbjct: 279 YCKEGNMIEALRFVYRMKELGVHPN 303



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN + ++  ++ A+ ++ +M   G KP     NTL  G     + E   K+   M  DG
Sbjct: 134 MINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDG 193

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  + RTY I +   C    I E+  +   +     + D+  Y+ L     + G    A
Sbjct: 194 SVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRA 253

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +  +  T  I+++G   +G M +A      M+E  V PN++ F +LI G
Sbjct: 254 EDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKG 313

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           F+ I +   V E L  M+E  V PD    S +++  +
Sbjct: 314 FLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWS 350



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 103/202 (50%), Gaps = 1/202 (0%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++  ++  G +P ++ + TL   L ++   E  F L  +++ +G+  D+  Y   I+   
Sbjct: 80  IFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFS 139

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADV 136
           ++G + E++++F+ ++   C+     ++ LI G   +G+ E  L++ H +   G +  + 
Sbjct: 140 ESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPND 199

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            TY+I++    +   +++A ++   M  + + P+V+T+  L   + +  E  +  +L+ +
Sbjct: 200 RTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILE 259

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           M+ + V P+     I+V+   K
Sbjct: 260 MQYEKVAPNERTCGIIVNGYCK 281


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EM+  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   +E AL    + ++ G +PD + +NT   GL +   V  A K+ D M ++
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I ++ LCKNG + E+  +   +    C  DI  ++ LI  LC   RLE A
Sbjct: 316 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA 375

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +  DV T++I+I+ L   G    A  LF +M+ +   P+ +T+ TLI  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAK 218
              + +  K ++LL  M E    P ++I  + ++D L K
Sbjct: 436 LCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCK 473



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  +   AL L+ EM + G  PD V +NTL   L  + ++ +A  L  +M+  
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMEST 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T TY   IDGLCK   I E+ E+F  + +     +   ++ LIDGLCK  +++ A
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + +    L  + +TY+ ++      G + KA D+   M  N    +V+T+GTLI+G
Sbjct: 516 FGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
             +       +++L  M+ K + P     + V+  L  +N I
Sbjct: 576 LCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 108/205 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CKN ++E A  + ++M+ +G  PD+   NTL   L   +++E A  L  ++   
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  T+ I I+ LCK G    ++ LF  ++   C  D   Y+ LID LC  G+L  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +         +TY+ +I GL    ++++A ++F  M+   ++ N ITF TLI G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +      L+++M  + + P+
Sbjct: 506 LCKDKKIDDAFGLINQMISEGLQPN 530



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    +E AL+L  ++  KG+ PDV   N L   L ++     A +LF+EM+  G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID LC  G + ++++L + +    C      Y+ +IDGLCK  R+E A 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + +T++ +I GL  D ++D A  L   M    + PN IT+ +++  +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHY 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  ++L  M       D      +++ L K
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK 578



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 35/237 (14%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++YSEM ++GIKPDVV  NTL   L   HQV  A  + +EM   GVA D  T+T  + G 
Sbjct: 167 SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 226

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL--------------- 121
            + G I  ++ +   +  + C       + LI+G CK GR+E AL               
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286

Query: 122 --------------ELFHSLP-RGVLV-----ADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
                          + H+L    V+V      DV TY+I+++ L  +GQ+++A  +   
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M +    P++ TF TLI      N   + ++L  ++  K V PD    +I+++ L K
Sbjct: 347 MVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 2/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   IE AL + + ML  G     V  N L  G  ++ +VE A     +   DG
Sbjct: 222 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY  F++GLC+N ++  ++++   +     + D+  Y+ +++ LCK+G+LE A 
Sbjct: 282 FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 341

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + + +  RG L  D+ T++ +I  L    ++++A DL   +    V+P+V TF  LI+ 
Sbjct: 342 GILNQMVDRGCL-PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             ++ +P   + L  +MK     PD    + ++D L
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 436



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 106/211 (50%), Gaps = 1/211 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+K+I+ A  L ++M+S+G++P+ + +N++     +   +++A  + + M  +G
Sbjct: 502 LIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLCK G    ++++ R +RI       +AY+ ++  L +   +  AL
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL-YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF  +       D +TY I+  GL    G + +A D  L+M +    P   +F  L  G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 681

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            + +      I  +  + EK  + ++ + +I
Sbjct: 682 LLNLGMDDYFIRAIEIIMEKVDLRESDVSAI 712



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/160 (16%), Positives = 69/160 (43%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ADT  Y   ++ L +   +     ++  +     + D+  ++ L+  LC++ ++  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   +    +  D  T++ ++ G   +G ++ A  +   M E   +   +T   LI+G
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + ++      +  + +       PD    +  V+ L +N+
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 300



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 10/191 (5%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----YSCLI 108
           L  EM+R+G          F+D         ++V+L   L  L+    IQA    Y+ L+
Sbjct: 96  LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI--LNQLQPLFGIQADTVVYNHLL 153

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + L +  ++++   ++  +    +  DVVT++ ++  L    Q+  A  +  +M    VA
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
           P+  TF TL+ GF+        IE   ++K + +    S   + V++L      L  +  
Sbjct: 214 PDETTFTTLMQGFVE----EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 269

Query: 229 FTVHERQEEVD 239
              + +QE  D
Sbjct: 270 ALGYIQQEIAD 280


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   +E AL    + ++ G +PD + +NT   GL +   V  A K+ D M ++
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I ++ LCKNG + E+  +   +    C  DI  ++ LI  LC   RLE A
Sbjct: 316 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA 375

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +  DV T++I+I+ L   G    A  LF +M+ +   P+ +T+ TLI  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAK 218
              + +  K ++LL  M E    P ++I  + ++D L K
Sbjct: 436 LCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCK 473



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  +   AL L+ EM + G  PD V +NTL   L  + ++ +A  L  +M+  
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMEST 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T TY   IDGLCK   I E+ E+F  + +     +   ++ LIDGLCK  +++ A
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL + +    L  + +TY+ ++      G + KA D+   M  N    +V+T+GTLI+G
Sbjct: 516 FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
             +       +++L  M+ K + P     + V+  L  +N I
Sbjct: 576 LCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 109/205 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CKN ++E A  + ++M+ +G  PD+   NTL   L   +++E A  L  ++   
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  T+ I I+ LCK G    ++ LF  ++   C  D   Y+ LID LC  G+L  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +         +TY+ +I GL    ++++A ++F  M+   ++ N ITF TLI G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     EL+++M  + + P+
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPN 530



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    +E AL+L  ++  KG+ PDV   N L   L ++     A +LF+EM+  G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID LC  G + ++++L + +    C      Y+ +IDGLCK  R+E A 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + +T++ +I GL  D ++D A +L   M    + PN IT+ +++  +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  ++L  M       D      +++ L K
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK 578



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 35/237 (14%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++YSEM ++GIKPDVV  NTL   L   HQV  A  + +EM   GVA D  T+T  + G 
Sbjct: 167 SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGF 226

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL--------------- 121
            + G I  ++ +   +  + C       + LI+G CK GR+E AL               
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286

Query: 122 --------------ELFHSLP-RGVLV-----ADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
                          + H+L    V+V      DV TY+I+++ L  +GQ+++A  +   
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M +    P++ TF TLI      N   + ++L  ++  K V PD    +I+++ L K
Sbjct: 347 MVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 2/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   IE AL + + ML  G     V  N L  G  ++ +VE A     +   DG
Sbjct: 222 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY  F++GLC+N ++  ++++   +     + D+  Y+ +++ LCK+G+LE A 
Sbjct: 282 FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 341

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + + +  RG L  D+ T++ +I  L    ++++A DL   +    V+P+V TF  LI+ 
Sbjct: 342 GILNQMVDRGCL-PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             ++ +P   + L  +MK     PD    + ++D L
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 436



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 106/211 (50%), Gaps = 1/211 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+K+I+ A  L ++M+S+G++P+ + +N++     +   +++A  + + M  +G
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLCK G    ++++ R +RI       +AY+ ++  L +   +  AL
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL-YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF  +       D +TY I+  GL    G + +A D  L+M +    P   +F  L  G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 681

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            + +      I  +  + EK  + ++ + +I
Sbjct: 682 LLNLGMDDYFIRAIEIIMEKVDLRESDVSAI 712



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/160 (16%), Positives = 69/160 (43%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ADT  Y   ++ L +   +     ++  +     + D+  ++ L+  LC++ ++  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   +    +  D  T++ ++ G   +G ++ A  +   M E   +   +T   LI+G
Sbjct: 201 VIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + ++      +  + +       PD    +  V+ L +N+
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 300



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 10/191 (5%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----YSCLI 108
           L  EM+R+G          F+D         ++V+L   L  L+    IQA    Y+ L+
Sbjct: 96  LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI--LNQLQPLFGIQADTVVYNHLL 153

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + L +  ++++   ++  +    +  DVVT++ ++  L    Q+  A  +  +M    VA
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVA 213

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
           P+  TF TL+ GF+        IE   ++K + +    S   + V++L      L  +  
Sbjct: 214 PDETTFTTLMQGFVE----EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 269

Query: 229 FTVHERQEEVD 239
              + +QE  D
Sbjct: 270 ALGYIQQEIAD 280


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C ++    A+ LY EM +KG  PD   +N L   L    +++ A  L  EM+  G
Sbjct: 412 LIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSG 471

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TY   IDG CKN  I E+ E+F  + +     +   Y+ LIDGLCKS R+E A 
Sbjct: 472 CARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEAS 531

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ ++      G + KA D+   M  +   P+++T+GTLI G 
Sbjct: 532 QLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGL 591

Query: 182 IRINEPSKVIELLH--KMKEKNVMPDA 206
            +        +LL   +MK  N+ P A
Sbjct: 592 CKAGRVEAATKLLRTIQMKGINLTPHA 618



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 1/207 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKNK I  A  ++ +M  +G+  + V +NTL  GL +  +VE A +L D+M  +G
Sbjct: 482 LIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEG 541

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +   CK G I ++ ++ +T+    CE DI  Y  LI GLCK+GR+E A 
Sbjct: 542 LRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAAT 601

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  ++    +      Y+ +I  L+   +  +A  LF +M E A AP+ +T+  +  G 
Sbjct: 602 KLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGL 661

Query: 182 IRINEP-SKVIELLHKMKEKNVMPDAS 207
            +   P  + ++ + +M E+  +P+ S
Sbjct: 662 CQGGGPIGEAVDFVMEMLERGYVPEFS 688



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 117/220 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  K   ++ AL +   ML +G  PD+  +N+L  GL ++ +V+ A K+ ++M   
Sbjct: 306 MLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIER 365

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + +T TY   I  LCK   + E+ +L   L       D+  Y+ LI GLC S    +A
Sbjct: 366 DCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVA 425

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL+  +       D  TY+++I  L   G++ +A +L  +ME +  A NVIT+ TLI G
Sbjct: 426 MELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDG 485

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F +    ++  E+  +M+ + V  ++   + ++D L K+E
Sbjct: 486 FCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSE 525



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  E++ A+ + ++M+ +   P+ V +NT+   L + +QVE A KL   +   G
Sbjct: 342 LISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKG 401

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I GLC +     ++EL++ ++   C  D   Y+ LID LC  G+L+ AL
Sbjct: 402 ILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEAL 461

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       +V+TY+ +I G   + ++ +A ++F  ME   V+ N +T+ TLI G 
Sbjct: 462 NLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGL 521

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L+ +M  + + PD
Sbjct: 522 CKSERVEEASQLMDQMIMEGLRPD 545



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK  ++E A  L   +  KGI PDV  +N+L  GL        A +L+ EM+  G
Sbjct: 377 IISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + ID LC  G + E++ L + + +  C  ++  Y+ LIDG CK+ R+  A 
Sbjct: 437 CHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAE 496

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + VTY+ +I GL    ++++A  L   M    + P+  T+ +L+  F
Sbjct: 497 EIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYF 556

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  +++  M      PD      ++  L K
Sbjct: 557 CKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCK 593



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 105/212 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C   +++ ALNL  EM   G   +V+ +NTL  G  +  ++  A ++FD+M+  
Sbjct: 446 MLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQ 505

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ ++ TY   IDGLCK+  + E+ +L   + +     D   Y+ L+   CK+G ++ A
Sbjct: 506 GVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKA 565

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++  ++       D+VTY  +I GL   G+++ A  L   ++   +      +  +I  
Sbjct: 566 ADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQA 625

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
             R     + + L  +M EK   PDA    IV
Sbjct: 626 LFRRKRSKEAVRLFREMIEKAEAPDAVTYKIV 657



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 1/201 (0%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
           +S M+S+GI+PDV   N L   L   HQ+  A  L +EM+  G+  D +T+T  + G  +
Sbjct: 183 HSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIE 242

Query: 79  NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADVV 137
            G +  ++ +   +    C +     + L++G CK GR+E AL     +  R     D  
Sbjct: 243 EGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKY 302

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T++++++GL   G +  A ++   M      P++ T+ +LI G  ++ E  + +++L++M
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
            E++  P+    + ++  L K
Sbjct: 363 IERDCSPNTVTYNTIISTLCK 383


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 103/181 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK + ++ A+ L +EM +K + PD V +N L  GL +  +    + L + M+  G
Sbjct: 357 LINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASG 416

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD  TY + +D   K+    +++ LF+ +  +    +I+ Y+ L+DGLCKSGRL+ A 
Sbjct: 417 QPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAK 476

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L       ++ TY+IMIHGL  +G +D+A  L   M  N   PN ITF T++   
Sbjct: 477 EIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAI 536

Query: 182 I 182
           +
Sbjct: 537 L 537



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  +   A+ ++ +M    + P+++++NT+  GL +   V+ A  L  EM  +G
Sbjct: 181 IINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENG 240

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D  +Y   I G C  G    +V+L   + +  K   D+  ++ LIDGLCK GR+  A
Sbjct: 241 IELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEA 300

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +     D+V+Y+ +++G    G + +A  +F  M E    PNVI++ TLI+G
Sbjct: 301 YNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLING 360

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
           + ++    + + LL +M  KN++PD    + ++D L+K+  SL
Sbjct: 361 YCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSL 403



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK   +  A N+ + M+ +G KPD+V +N L  G      V  A ++FD+M   
Sbjct: 286 ILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVER 345

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  +Y   I+G CK   + E++ L   +       D   Y+CL+DGL KSGR    
Sbjct: 346 TALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYE 405

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L  ++      AD++TY++++   +   + DKA  LF  + E  ++PN+ T+  L+ G
Sbjct: 406 WDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDG 465

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +        E+   +  K   P+    +I++  L K
Sbjct: 466 LCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCK 503



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYC +  +  A  ++ +M+ +   P+V+ + TL  G  ++  V+ A  L  EM    
Sbjct: 322 LMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKN 381

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   +DGL K+G  +   +L   +R      D+  Y+ L+D   K  + + AL
Sbjct: 382 LVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKAL 441

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  ++ TY+I++ GL   G++  A ++F  +      PN+ T+  +IHG 
Sbjct: 442 ALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGL 501

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +   LL+KM   N +P+
Sbjct: 502 CKEGFLDEAEALLYKMVNNNYLPN 525



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L++   K K     ++LY+ + SK  IKP ++  + L     ++ Q+  AF L   + + 
Sbjct: 75  LLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKM 134

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D R  T  + GLC  G ++E+V L           D   Y  +I+GLCK G+   A
Sbjct: 135 GFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDA 194

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F  + +  +  +++ Y+ +I GL   G +D+A  L  +M EN +  +V ++ ++IHG
Sbjct: 195 IQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHG 254

Query: 181 FIRINEPSKVIELLHKMKEKN-VMPDASIVSIVVDLLAK 218
           F  +      ++LL +M  +  V PD    +I++D L K
Sbjct: 255 FCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCK 293



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
           +I+G CK   ++ A  L +EM+  GI+ DV  +N++  G   + + + A KL DEM  R 
Sbjct: 216 VIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG 275

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  T+ I IDGLCK G + E+  +   +     + DI +Y+ L++G C SG +  A
Sbjct: 276 KVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEA 335

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +     + +V++Y  +I+G      +D+A  L  +M    + P+ +T+  L+ G
Sbjct: 336 KQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDG 395

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +        +L+  M+      D    ++++D   K+E
Sbjct: 396 LSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHE 435



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I+G+C     + A+ L  EM+ +G + PDV   N L  GL ++ +V  A+ +   M + 
Sbjct: 251 MIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR 310

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   ++G C +G + E+ ++F  +       ++ +Y  LI+G CK   ++ A
Sbjct: 311 GWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEA 370

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +    LV D VTY+ ++ GL   G+     DL   M  +    ++IT+  L+  
Sbjct: 371 MVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDD 430

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + +  +  K + L   + E  + P+    +I++D L K+
Sbjct: 431 YFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKS 469



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN + +  ++  A +L   +L  G + DV I  TL  GL    +V  A  L  E    
Sbjct: 110 ILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDR 169

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   I+GLCK G   +++++F  ++ ++   ++  Y+ +IDGLCK G ++ A
Sbjct: 170 GFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEA 229

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
             L   +    +  DV +Y+ MIHG  + G+   A  L  +M     V P+V TF  LI 
Sbjct: 230 CGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILID 289

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G  ++   S+   ++  M ++   PD
Sbjct: 290 GLCKLGRVSEAYNVVAVMIKRGWKPD 315



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y K+++ + AL L+  ++  GI P++  +N L  GL +  +++ A ++F  +   
Sbjct: 426 VLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAK 485

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           G   + RTY I I GLCK G++ E+  L
Sbjct: 486 GCQPNIRTYNIMIHGLCKEGFLDEAEAL 513


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 118/218 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C++  ++    +  EM  KG  PD V +NTL  G  +     +A  L  EM R+
Sbjct: 58  MIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRN 117

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TYT  I+ +CK G +  ++E F  + +     + + Y+ +I+G  + G L+ A
Sbjct: 118 GLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEA 177

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             + + + R   +  +VTY+ +I+G    G+M++A  L  DM    V P+V+++ T+I G
Sbjct: 178 YRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISG 237

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  E  +  ++  +M  K+V+PDA   S ++  L +
Sbjct: 238 FARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCE 275



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 111/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK K  + A      M  KG++P+++  N +  GL    +++   ++  EM R G
Sbjct: 24  MIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKG 83

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++G CK G   +++ L   +       ++  Y+ LI+ +CK+G L  A+
Sbjct: 84  YVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAM 143

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F  +    L  +  TY+ +I+G    G +D+A+ +  +M  +   P+++T+  LI+G 
Sbjct: 144 EFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGH 203

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +    + I LL  M  K V+PD    S ++   A+N+
Sbjct: 204 CVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQ 242



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 15/227 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C    +E A+ L  +M+ KG+ PDVV ++T+  G     +++RAF++  EM    
Sbjct: 199 LINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKS 258

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  I GLC+   + E+ ++F+ +  +K   D   Y+ LI+  CK G L  AL
Sbjct: 259 VLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKAL 318

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +   + D VTY+++I+GL    +  +A  L L +  +   P+ +T+ TLI   
Sbjct: 319 HLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENC 378

Query: 182 IRINEPSKVI---------------ELLHKMKEKNVMPDASIVSIVV 213
             I   S V                ++   M  KN  P+ +I ++++
Sbjct: 379 CNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVII 425



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 35/256 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK      AL L++EM+  G+ P+VV + +L   + +   + RA + FD+M   G
Sbjct: 94  LVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRG 153

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + RTYT  I+G  + G + E+  +   +        I  Y+ LI+G C  GR+E A+
Sbjct: 154 LCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAI 213

Query: 122 ELFHSL-PRGVL----------------------------------VADVVTYSIMIHGL 146
            L   +  +GVL                                  + D VTYS +I GL
Sbjct: 214 GLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGL 273

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++ +A D+F +M    + P+  T+ TLI+ + +  + +K + L  +M +K  +PDA
Sbjct: 274 CEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDA 333

Query: 207 SIVSIVVDLLAKNEIS 222
              +++++ L K   S
Sbjct: 334 VTYNVLINGLNKQARS 349



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 89/169 (52%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
             + F EM+R+G   +  TY   IDG CK     E+    R++ +   E ++  ++ +I+
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           GLC+ GRL+   E+   + R   V D VTY+ +++G   +G   +A  L  +M  N ++P
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           NV+T+ +LI+   +    ++ +E   +M  + + P+    + +++  A+
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQ 170



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 2/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ +   ++ A  + +EM   G  P +V +N L  G   + ++E A  L  +M   G
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
           V  D  +Y+  I G  +N  +  + ++ +   I K  L D   YS LI GLC+  RL  A
Sbjct: 224 VLPDVVSYSTIISGFARNQELDRAFQM-KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEA 282

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    L  D  TY+ +I+    +G ++KA  L  +M +    P+ +T+  LI+G
Sbjct: 283 CDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLING 342

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +     +   LL K+   + +P A   + +++
Sbjct: 343 LNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIE 376



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 15/232 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ + +  A +++ EML+  + PD   + TL     +   + +A  L DEM + G
Sbjct: 269 LIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKG 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------------FRTLRILKCELDIQAYSC 106
              D  TY + I+GL K     E+  L               + TL    C ++ ++   
Sbjct: 329 FLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVA 388

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           L+ G C  G ++ A ++F S+       +   Y+++IHG    G + KA+ L+ +M    
Sbjct: 389 LVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVD 448

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             P+ +T   L+          ++ E++  +     + DA +  ++V++  K
Sbjct: 449 FVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQK 500



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%)

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           + L  F  + R   + +VVTY+ MI G     + D+A      M    + PN+ITF  +I
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMII 60

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +G  R     +  E+L +M  K  +PD    + +V+   K
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCK 100



 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C    ++ A  ++  M++K  KP+  I+N +  G   I  V +A+KL+ EM    
Sbjct: 389 LVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVD 448

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIA 120
               T T    +  L   G   E  E+   + +  C+L D +    L++   K G +++ 
Sbjct: 449 FVPHTVTVLALVKALFTEGMDGELNEVIGDI-LRSCKLTDAELSKVLVEINQKEGNMDMV 507

Query: 121 LELFHSLPRGVLVADVVT 138
             L   + +  L+    T
Sbjct: 508 FNLLTEMAKDGLIPSTGT 525



 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            F +ME N   PNV+T+ T+I G+ ++    +    L  M  K + P+    +++++ L 
Sbjct: 5   FFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLC 64

Query: 218 KN 219
           ++
Sbjct: 65  RD 66


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   +E AL    + ++ G +PD + +NT   GL +   V  A K+ D M ++
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I ++ LCKNG + E+  +   +    C  DI  ++ LI  LC   RLE A
Sbjct: 316 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA 375

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +  DV T++I+I+ L   G    A  LF +M+ +   P+ +T+ TLI  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAK 218
              + +  K ++LL  M E    P ++I  + ++D L K
Sbjct: 436 LCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCK 473



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  +   AL L+ EM + G  PD V +NTL   L  + ++ +A  L  +M+  
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMEST 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T TY   IDGLCK   I E+ E+F  + +     +   ++ LIDGLCK  +++ A
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL + +    L  + +TY+ ++      G + KA D+   M  N    +V+T+GTLI+G
Sbjct: 516 FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
             +       +++L  M+ K + P     + V+  L  +N I
Sbjct: 576 LCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 109/205 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  CKN ++E A  + ++M+ +G  PD+   NTL   L   +++E A  L  ++   
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ D  T+ I I+ LCK G    ++ LF  ++   C  D   Y+ LID LC  G+L  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +         +TY+ +I GL    ++++A ++F  M+   ++ N ITF TLI G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +  +     EL+++M  + + P+
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPN 530



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C    +E AL+L  ++  KG+ PDV   N L   L ++     A +LF+EM+  G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ID LC  G + ++++L + +    C      Y+ +IDGLCK  R+E A 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + +T++ +I GL  D ++D A +L   M    + PN IT+ +++  +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  K  ++L  M       D      +++ L K
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK 578



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 35/237 (14%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++YSEM ++GIKPDVV  NTL   L   HQV  A  + +EM   GVA D  T+T  + G 
Sbjct: 167 SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 226

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL--------------- 121
            + G I  ++ +   +  + C       + LI+G CK GR+E AL               
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286

Query: 122 --------------ELFHSLP-RGVLV-----ADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
                          + H+L    V+V      DV TY+I+++ L  +GQ+++A  +   
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           M +    P++ TF TLI      N   + ++L  ++  K V PD    +I+++ L K
Sbjct: 347 MVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 2/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   IE AL + + ML  G     V  N L  G  ++ +VE A     +   DG
Sbjct: 222 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 281

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY  F++GLC+N ++  ++++   +     + D+  Y+ +++ LCK+G+LE A 
Sbjct: 282 FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 341

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + + +  RG L  D+ T++ +I  L    ++++A DL   +    V+P+V TF  LI+ 
Sbjct: 342 GILNQMVDRGCL-PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             ++ +P   + L  +MK     PD    + ++D L
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 436



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 106/211 (50%), Gaps = 1/211 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+K+I+ A  L ++M+S+G++P+ + +N++     +   +++A  + + M  +G
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLCK G    ++++ R +RI       +AY+ ++  L +   +  AL
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL-YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF  +       D +TY I+  GL    G + +A D  L+M +    P   +F  L  G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 681

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            + +      I  +  + EK  + ++ + +I
Sbjct: 682 LLNLGMDDYFIRAIEIIMEKVDLRESDVSAI 712



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/160 (16%), Positives = 69/160 (43%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ ADT  Y   ++ L +   +     ++  +     + D+  ++ L+  LC++ ++  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   +    +  D  T++ ++ G   +G ++ A  +   M E   +   +T   LI+G
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + ++      +  + +       PD    +  V+ L +N+
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 300



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 10/191 (5%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----YSCLI 108
           L  EM+R+G          F+D         ++V+L   L  L+    IQA    Y+ L+
Sbjct: 96  LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI--LNQLQPLFGIQADTVVYNHLL 153

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + L +  ++++   ++  +    +  DVVT++ ++  L    Q+  A  +  +M    VA
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
           P+  TF TL+ GF+        IE   ++K + +    S   + V++L      L  +  
Sbjct: 214 PDETTFTTLMQGFVE----EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 269

Query: 229 FTVHERQEEVD 239
              + +QE  D
Sbjct: 270 ALGYIQQEIAD 280


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 113/219 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ + +  A  L   M   G+ P+++ +NTL  G   I  +++A  LF++M+  G
Sbjct: 310 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 369

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY I I G  +        ++ R +           Y+ L+D L +S  +E A 
Sbjct: 370 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 429

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +++ S+ +  LVAD+  Y ++IHGL   G M +A  LF  ++E  + PN + + T+I+G+
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 489

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + LL +M E  ++P+ +  +  + +L K+E
Sbjct: 490 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDE 528



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 112/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+   ++    +  +M   G+ P+VV++ TL  G  +   +ER  +LF +M   
Sbjct: 169 IMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGEL 228

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V A+  TYT+ I+G  K G   + +EL+  +++     ++  Y+ +I   C  G+L  A
Sbjct: 229 DVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNA 288

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    +  +VVTY+ +I GL  + ++ +A  L   M+ + ++PN+I++ TLI G
Sbjct: 289 FELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDG 348

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +  I    K   L ++MK     P  +  +I++
Sbjct: 349 YCSIGNLDKASSLFNQMKSSGQSPSLATYNILI 381



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 120/237 (50%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN +IE    L+ +M    +  +   +  L  G F++   +   +L+++M+  G
Sbjct: 205 LIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I   C +G +  + ELF  +R      ++  Y+ LI GLC+  R+  A 
Sbjct: 265 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAE 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  L  ++++Y+ +I G  + G +DKA  LF  M+ +  +P++ T+  LI GF
Sbjct: 325 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGF 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
                 + V +++ +M+ + + P     +I++D L +++   N   +F ++   E+ 
Sbjct: 385 SEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSD---NIEKAFQIYSSMEKA 438



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K    +  + LY +M   GI P+V  +N++        ++  AF+LFDEM+  
Sbjct: 239 VLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  TY   I GLC+   ++E+  L   ++      ++ +Y+ LIDG C  G L+ A
Sbjct: 299 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 358

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF+ +        + TY+I+I G           D+  +ME   ++P+ +T+  L+  
Sbjct: 359 SSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDA 418

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +R +   K  ++   M++  ++ D  I  +++
Sbjct: 419 LVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 451



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN + +++  E AL  +++M+ +G+ P     N L I L + +  E+A+++F+E  +  
Sbjct: 101 IINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGN 159

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  ++ I I G C+ GY+ +  E+   +  +    ++  Y+ LIDG CK+G +E   
Sbjct: 160 VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 219

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY---------------------------------- 147
           +LF+ +    +VA+  TY+++I+G +                                  
Sbjct: 220 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRC 279

Query: 148 -NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            NDG+++ A +LF +M E  VA NV+T+ TLI G  +     +   L+ +MK   + P+ 
Sbjct: 280 CNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNL 339

Query: 207 SIVSIVVD 214
              + ++D
Sbjct: 340 ISYNTLID 347



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC    ++ A +L+++M S G  P +  +N L  G  E         +  EM+  G
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    TYTI +D L ++  I ++ +++ ++       DI  Y  LI GLC  G ++ A 
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    L  + V Y+ MI+G   +G   +A  L  +M EN + PNV ++ + I   
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQIL 524

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
            +  + ++   LL  M E  + P  SI +++
Sbjct: 525 CKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+ + K   G  ++  EM ++G+ P  V +  L   L     +E+AF+++  M++ 
Sbjct: 379 ILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKA 438

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ AD   Y + I GLC  G + E+ +LF++L  +  + +   Y+ +I G CK G    A
Sbjct: 439 GLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRA 498

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           L L   +    +V +V +Y+  I  L  D +  +A  L  DM E  + P++
Sbjct: 499 LRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSI 549


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 36/262 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+ K   I+ AL +Y EM   G+ P+VV + +L  G  + ++++ A K  DEM+  G
Sbjct: 615 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 674

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF----------------------RTLRILKCEL 99
           +  D   Y+  IDG CK   +  + +LF                      R L  ++  L
Sbjct: 675 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 734

Query: 100 -------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+  Y+ LIDGL K GRL  A +L+  +    +V D++T+ ++++GL
Sbjct: 735 VWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 794

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N GQ++ A  +  +M+   + P+V+ + TLI G+ R     +   L  +M ++ ++PD 
Sbjct: 795 CNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDD 854

Query: 207 SIVSIVVDLLAKNEISLNSLPS 228
               I+++   K + SL S PS
Sbjct: 855 VTYDILINGKFKGDRSL-SRPS 875



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C +  IE A  LY++M   GI P V   N+L  G  +    E A KLFDE    
Sbjct: 405 VLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDC 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV A+  TY I +  LCK G + E+  L   +       ++ +Y+ +I G C+ G +++A
Sbjct: 465 GV-ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMA 523

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L  +VVTYSI+I G +  G  +KA DLF  M    +AP   TF T+I+G
Sbjct: 524 SSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIING 583

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ + S+  + L    E+  +P     + +VD   K
Sbjct: 584 LCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK 621



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  + E AL+L+ +MLS  I P     NT+  GL ++ Q+  A         +
Sbjct: 544 ILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 603

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   +DG  K G I  ++ ++R +       ++  Y+ LI+G CKS R+++A
Sbjct: 604 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 663

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+    +    L  DV  YS +I G      M+ A DLF ++ E  ++PN I + ++I G
Sbjct: 664 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 723

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F  +N     +    KM    +  D    + ++D L K
Sbjct: 724 FRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 761



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  ++  A +     L +G  P  + +N++  G  +   ++ A  ++ EM   G
Sbjct: 580 IINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFG 639

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TYT  I+G CK+  I  +++    +R    ELD+ AYS LIDG CK   +E A 
Sbjct: 640 VSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQ 699

Query: 122 ELFHSL------PRGV-----------------------------LVADVVTYSIMIHGL 146
           +LF  L      P  +                             +  D+ TY+ +I GL
Sbjct: 700 DLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGL 759

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++  A DL+++M    + P++ITF  L++G     +     ++L +M  KN+ P  
Sbjct: 760 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSV 819

Query: 207 SIVSIVV 213
            I + ++
Sbjct: 820 LIYNTLI 826



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 117/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK  +++ A +L   M+++G+ P+VV +N + +G      ++ A  +F +M   
Sbjct: 474 IMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLAR 533

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TY+I IDG  K G   ++++LF  +  L        ++ +I+GLCK G++  A
Sbjct: 534 DLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEA 593

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +   +      +   +TY+ ++ G   +G +D A  ++ +M E  V+PNV+T+ +LI+G
Sbjct: 594 RDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLING 653

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F + N     ++   +M+EK +  D +  S ++D   K
Sbjct: 654 FCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCK 691



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++    K   +E A   + E   +G+K D   ++ +   + +        +L +EM+  
Sbjct: 265 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 324

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+T  I      G +VE++ L   +      +++   + L+ G C  G L+ A
Sbjct: 325 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSA 384

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF+ +    L  + VTYS++I G  N G ++KA +L+  M+ N + P+V    +L+ G
Sbjct: 385 LNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRG 444

Query: 181 FIR 183
           +++
Sbjct: 445 YLK 447



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 100/248 (40%), Gaps = 34/248 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I   CK       L L  EM  +G  P      ++ +       +  A +L +EM   
Sbjct: 300 IIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINC 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +    T  + G C  G +  ++ LF  +       +   YS LI+G C SG +E A
Sbjct: 360 GKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKA 419

Query: 121 LELF---------------HSLPRGVL-------------------VADVVTYSIMIHGL 146
            EL+               +SL RG L                   VA++ TY+IM+  L
Sbjct: 420 SELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWL 479

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G+MD+A  L  +M    + PNV+++  +I G  R         +   M  +++ P+ 
Sbjct: 480 CKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNV 539

Query: 207 SIVSIVVD 214
              SI++D
Sbjct: 540 VTYSILID 547



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N Y +   IE A++ ++ M+ + + P V   N L   L   + +     L+++M   G
Sbjct: 196 LLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T  + +    K G + E+ E FR  +    +LD  AYS +I  +CK     + L
Sbjct: 256 IYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGL 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     V    T++ +I      G M +A  L  +M       N++   +L+ G+
Sbjct: 316 ELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGY 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                    + L +K+ E  + P+    S++++
Sbjct: 376 CAQGNLDSALNLFNKITEDGLFPNKVTYSVLIE 408



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG C   ++E A  +  EM  K + P V+I+NTL  G F    ++ AF L DEM   
Sbjct: 789 VLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDR 848

Query: 61  GVAADTRTYTIFIDG 75
           G+  D  TY I I+G
Sbjct: 849 GLVPDDVTYDILING 863



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 38/161 (23%)

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSL------P----------------------- 128
           ELD + ++ L++   ++ R+E A++ F+++      P                       
Sbjct: 187 ELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRD 246

Query: 129 -------RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                  RG+   D  T  +M+     +G++++A + F + +E  V  +   +  +I   
Sbjct: 247 LYNKMVLRGIY-GDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAV 305

Query: 182 IRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEI 221
            +    +  +ELL +MKE+  +P +A+  S++V  +A+  +
Sbjct: 306 CKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNM 346


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 126/254 (49%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK++ +  AL+++S M +KGI P++  +N+L  GL    +   A  + +EM    
Sbjct: 51  IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 110

Query: 62  VAADTRTYTIFIDGLCK------------------------------NGY-----IVESV 86
           +  +  T+++ I+  CK                              NGY     + E+ 
Sbjct: 111 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEAR 170

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +LF  +    C+ D+ +Y+ LI+G CK+ R+  A +LF+ +    L  D+V+Y+ +I GL
Sbjct: 171 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGL 230

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++ +AHDLF +M  N   P++ T+  L+ GF +    +K   L   M+   + P+ 
Sbjct: 231 CQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNM 290

Query: 207 SIVSIVVDLLAKNE 220
            + +I++D + K+ 
Sbjct: 291 VMYNILIDAMCKSR 304



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 105/205 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LIN +CK   +  A  +   M   G++P+VV +++L  G     +V  A KLFD M   
Sbjct: 120 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITK 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y I I+G CK   I E+ +LF  +       DI +Y+ LIDGLC+ GRL  A
Sbjct: 180 GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 239

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF ++     + D+ TYSI++ G    G + KA  LF  M+   + PN++ +  LI  
Sbjct: 240 HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     +  +L  ++  + + P+
Sbjct: 300 MCKSRNLKEARKLFSELFVQGLQPN 324



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 91/170 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY    E+  A  L+  M++KG KPDV  +N L  G  +  ++  A +LF+EM   G
Sbjct: 156 LMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 215

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   IDGLC+ G + E+ +LF+ +       D+  YS L+DG CK G L  A 
Sbjct: 216 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 275

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            LF ++    L  ++V Y+I+I  +     + +A  LF ++    + PN+
Sbjct: 276 RLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 103/197 (52%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+++G +PDV  + T+  GL +I +   A  LF +M   G   D  TY+  ID LCK+  
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + E++++F  ++      +I  Y+ LI GLC   R   A  + + +    ++ ++VT+S+
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I+    +G + +A  +   M E  V PNV+T+ +L++G+    E  +  +L   M  K 
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 202 VMPDASIVSIVVDLLAK 218
             PD    +I+++   K
Sbjct: 181 CKPDVFSYNILINGYCK 197



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK   +  A  L+  M S  +KP++V++N L   + +   ++ A KLF E+   
Sbjct: 260 ILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQ 319

Query: 61  GVAADTRTYTIF 72
           G+  + + + +F
Sbjct: 320 GLQPNMKHWKLF 331



 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           M      P+V T+ T+I+G  +I E      L  KM E    PD    S ++D L K+ 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDR 59


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 118/213 (55%), Gaps = 1/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++  Y + ++++ A+  ++ M    + P++V  N L   L +   V +A ++F+ M RD
Sbjct: 173 IVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM-RD 231

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D++TY+I ++G  K   + ++ E+FR +    C  DI  YS ++D LCK+GR++ A
Sbjct: 232 RFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEA 291

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +  S+   +       YS+++H    + ++++A D FL+ME + +  +V  F +LI  
Sbjct: 292 LGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGA 351

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F + N    V  +L +MK K V P++   +I++
Sbjct: 352 FCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 384



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y     +E A++ + EM   G+K DV + N+L     + ++++  +++  EM+  
Sbjct: 312 VLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSK 371

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  ++++  I +  L + G   E+ ++FR + I  CE D   Y+ +I   C+   +E A
Sbjct: 372 GVTPNSKSCNIILRHLIERGEKDEAFDVFRKM-IKVCEPDADTYTMVIKMFCEKKEMETA 430

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +++  + +  +   + T+S++I+GL  +    KA  L  +M E  + P+ +TFG L   
Sbjct: 431 DKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQL 490

Query: 181 FIRINEPSKVIELLHK 196
            I+  E   V++ L++
Sbjct: 491 LIK-EEREDVLKFLNE 505



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK+K +  A  ++  M  +   PD   ++ L  G  +   + +A ++F EM   G
Sbjct: 209 LLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I +D LCK G + E++ + R++    C+     YS L+       RLE A+
Sbjct: 268 CHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAV 327

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + R  + ADV  ++ +I       +M   + +  +M+   V PN  +   ++   
Sbjct: 328 DTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHL 387

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I   E  +  ++  KM  K   PDA   ++V+ +  + +
Sbjct: 388 IERGEKDEAFDVFRKMI-KVCEPDADTYTMVIKMFCEKK 425



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK   ++ AL +   M     KP   I++ L       +++E A   F EM+R 
Sbjct: 277 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 336

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE-LDIQAYSC--LIDGLCKSGRL 117
           G+ AD   +   I   CK   +     ++R L+ +K + +   + SC  ++  L + G  
Sbjct: 337 GMKADVAVFNSLIGAFCKANRMKN---VYRVLKEMKSKGVTPNSKSCNIILRHLIERGEK 393

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A ++F  + + V   D  TY+++I       +M+ A  ++  M +  V P++ TF  L
Sbjct: 394 DEAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVL 452

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I+G        K   LL +M E  + P       +  LL K E
Sbjct: 453 INGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEE 495



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 80/171 (46%), Gaps = 2/171 (1%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           +I Q +  + L + M++  +  +  T+ I +    +   + E++  F  +       ++ 
Sbjct: 146 KIRQYKLMWDLINAMRKKKML-NVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLV 204

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           A++ L+  LCKS  +  A E+F ++ R     D  TYSI++ G   +  + KA ++F +M
Sbjct: 205 AFNGLLSALCKSKNVRKAQEVFENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREM 263

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +    P+++T+  ++    +     + + ++  M      P   I S++V
Sbjct: 264 IDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLV 314


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 1/210 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK  ++     ++  M+ KG KP+V I+  L  G  +   VE A +L   M  +
Sbjct: 332 LVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDE 391

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY++ ++GLCKNG + E+++ F+T R     ++   YS LIDGL K+GR++ A
Sbjct: 392 GFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEA 451

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
             LF  +       D   Y+ +I      G++D+A  LF  M EE      V T+  LI 
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILIS 511

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G  + +   + ++L   M +K + P A+ +
Sbjct: 512 GMFKEHRNEEALKLWDMMIDKGITPTAACL 541



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 116/240 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYCK  + + AL     M +KG++ D + + T+    +          L+ EM   G
Sbjct: 263 MIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKG 322

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      +++ I GLCK G + E   +F  +     + ++  Y+ LIDG  K+G +E A+
Sbjct: 323 LQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAI 382

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L H +       DVVTYS++++GL  +G++++A D F     N +A N + + +LI G 
Sbjct: 383 RLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGL 442

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +     +   L  +M EK    D+   + ++D   K+     +L  F   E +E  D++
Sbjct: 443 GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQT 502



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 1/239 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GY K   +E A+ L   M+ +G  PDVV ++ +  GL +  +VE A   F   + +
Sbjct: 367 VLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFN 426

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A ++  Y+  IDGL K G + E+  LF  +    C  D   Y+ LID   K G+++ A
Sbjct: 427 GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEA 486

Query: 121 LELFHSLPRGVLVADVV-TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF  +         V TY+I+I G++ + + ++A  L+  M +  + P       L  
Sbjct: 487 LALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALST 546

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           G     + ++  ++L ++    V+ DA+   ++  L     I      +  + ER  EV
Sbjct: 547 GLCLSGKVARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERGREV 605



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  + K   +E  L ++ +M   GI+P +  +N L  GL     V+ A ++F+ M+   
Sbjct: 193 LIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGR 252

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G CK G   +++E  R +     E D   Y  +I            +
Sbjct: 253 IKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCV 312

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +    L      +S++I GL  +G++++ + +F +M      PNV  +  LI G+
Sbjct: 313 ALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGY 372

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +       I LLH+M ++   PD    S+VV+ L KN
Sbjct: 373 AKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKN 410



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K    E AL L+  M+ KGI P       L  GL    +V RA K+ DE+   
Sbjct: 508 ILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPM 567

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D     + I+ LCK G I E+ +L   +     E+  +  + +I+ L K G+ ++A
Sbjct: 568 GVILDAACEDM-INTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLA 626

Query: 121 LELFHS 126
           ++L HS
Sbjct: 627 MKLMHS 632



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+ + K+ +++ AL L+  M  + G    V  +  L  G+F+ H+ E A KL+D M   
Sbjct: 473 LIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDK 532

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+            GLC +G +  + ++   L  +   LD  A   +I+ LCK+GR++ A
Sbjct: 533 GITPTAACLRALSTGLCLSGKVARACKILDELAPMGVILD-AACEDMINTLCKAGRIKEA 591

Query: 121 LELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
            +L   +  RG  V   +  ++MI+ L   G+ D A  L
Sbjct: 592 CKLADGITERGREVPGRIR-TVMINALRKVGKADLAMKL 629



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 57/114 (50%)

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           +R  +  + +   + LI    K G +E  L ++  +    +   + TY+ +++GL +   
Sbjct: 178 IRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMF 237

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +D A  +F  ME   + P+V+T+ T+I G+ +  +  K +E L  M+ K +  D
Sbjct: 238 VDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEAD 291


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 3/199 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G CK   +E A +L  EM  KGIKP+VV +NTL     +I   E   ++   M+ D
Sbjct: 220 IVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMD 279

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  TYT+ I+    +G I E+ ++F  +     E DI  ++ +I   CK G ++ A
Sbjct: 280 KVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRA 339

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L    LVA+  TY  +IHG  N GQ+D A  L  +M+   +  N++ F TLI+G
Sbjct: 340 FALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLING 399

Query: 181 FIR---INEPSKVIELLHK 196
           + +   I+E  ++ +++ K
Sbjct: 400 YCKKGMIDEALRMQDVMEK 418



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 114/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   I+ AL +   M  KG + D+  +NT+  GL ++++ E A +    M   G
Sbjct: 396 LINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKG 455

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  ++TI ID  CK G +VE+  +F+ ++    + ++  Y+ LIDG  K G+L+ A 
Sbjct: 456 VDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAY 515

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    + +D+ TY+ ++HG    G++++A  L  ++    +A +++T+  +I G 
Sbjct: 516 RLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGL 575

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   L  +M    + PD  + + +V  L K
Sbjct: 576 SKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHK 612



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  Y  + +I  A  ++ +ML +G++ D+ +  ++     ++  ++RAF LFDE+   
Sbjct: 290 LLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNER 349

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+  TY   I G C +G +  +  L   ++    ++++  ++ LI+G CK G ++ A
Sbjct: 350 GLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEA 409

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   + +     D+ TY+ +  GL    + ++A      M E  V PN ++F  +I  
Sbjct: 410 LRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDI 469

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +   +   MK+K   P+    + ++D  +K
Sbjct: 470 HCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSK 507



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 78/147 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ +CK   +  A  ++ +M  KG KP+VV +NTL  G  +  +++ A++L DEM+  
Sbjct: 465 IMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESI 524

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ +D  TYT  + G C  G + E++ L   +      + I  Y+ +I GL K GR E A
Sbjct: 525 GMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEA 584

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLY 147
             L+  +    L  D   Y+ ++  L+
Sbjct: 585 FRLYDEMMAAGLTPDDRVYTSLVANLH 611



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 31  VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
           V + N++F         E  FK+FD M  +G+  D R+  + +  L ++  +V S+  F+
Sbjct: 154 VYVDNSMF---------EEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFK 204

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            +   K ++ + + + +IDGLCK GR+E A +L   +    +  +VVTY+ +++      
Sbjct: 205 KMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIM 264

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGF---IRINEPSKVIELLHKMKEKNVMPDAS 207
             +  +++   ME + V  N  T+  LI  +    +I E  KV E   KM E+ V  D  
Sbjct: 265 DFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFE---KMLERGVEADIH 321

Query: 208 IVSIVVDLLAK 218
           + + ++    K
Sbjct: 322 VFTSIISWQCK 332



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  +++ A  L  EM S G+  D+  + TL  G     +VE A  L +E+ R G
Sbjct: 501 LIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKG 560

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           +A    TYT  I GL K G   E+  L+  +       D + Y+ L+  L K+
Sbjct: 561 LAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHKT 613



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 88/206 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L   Y  N   E    ++  M+  G+K D        + L    Q+  +   F +M   
Sbjct: 150 MLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEF 209

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     + TI IDGLCK G +  + +L   +     + ++  Y+ L++   K    E  
Sbjct: 210 KVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGV 269

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   +    +V +  TY+++I    + G++ +A  +F  M E  V  ++  F ++I  
Sbjct: 270 NEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISW 329

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             ++    +   L  ++ E+ ++ +A
Sbjct: 330 QCKLGNMKRAFALFDELNERGLVANA 355


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C++ ++  A  ++  M   G+ P+ V +  L  G F   Q E  F L  EM+R G
Sbjct: 44  LVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGG 103

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   +   C+ G    +  LF  + +     ++ +Y+ LI GLC+ G+L+ A 
Sbjct: 104 VEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAA 163

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++ R  +   +VT++++I G    G+M  A   F  M+   + P+V+T+  LI GF
Sbjct: 164 QLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGF 223

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEI 221
            R  + +  I     MKE+ + P     +I++   AK NE+
Sbjct: 224 CRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEM 264



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 106/216 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C++ +++ A  L+  M  +GI P +V  N L  G  +  ++  A   F++M+  
Sbjct: 148 ILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAA 207

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I G C+   I  ++  F  ++  +       Y+ LI    K   ++ A
Sbjct: 208 GLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRA 267

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+   + +  L  DV +Y +++H L  +G+M  A  LF  M+   V PN + +  +I+G
Sbjct: 268 FEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYG 327

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + R     K + L+ +M++  ++P+ +   + + LL
Sbjct: 328 YGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRLL 363



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 107/215 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY    + E    L  EM   G++P++  +N L        + + A  LFDEM   G
Sbjct: 79  LIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKG 138

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y I I GLC++G + ++ +LF  +R       +  ++ LIDG  K+G++  AL
Sbjct: 139 VVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNAL 198

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    L   VVTY+ +I G      +  A   F DM+E  +AP  +T+  LI  F
Sbjct: 199 HFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAF 258

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            + NE  +  E+L +M++  +  D     +++  L
Sbjct: 259 AKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHAL 293



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GY K  ++  AL+ +++M + G++P VV +N L  G      +  A + F +M+  
Sbjct: 183 LLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKER 242

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A    TYTI I    K   +  + E+   +     E+D+Q+Y  L+  LC  G++  A
Sbjct: 243 RLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHA 302

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF S+    +  + V Y +MI+G   +G   KA  L ++M ++ + PNV ++   I  
Sbjct: 303 RKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRL 362

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +  +   L+  M++  +    SI  ++ D  A+
Sbjct: 363 LCNEGKCQEAEALIGDMEDAGLQTSESICRVLFDAKAR 400



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 9/204 (4%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKP-----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           C   E+  AL +    L++G K      DV     L  G  +   V  A ++FD M R G
Sbjct: 13  CAAAEVRSALAV----LARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLG 68

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  I G    G       L   +R    E ++  Y+CL+   C++G  + A 
Sbjct: 69  VTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSAR 128

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +P   +V +VV+Y+I+I GL   G++  A  LF  M    + P+++TF  LI G+
Sbjct: 129 LLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGY 188

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  + S  +   ++MK   + P 
Sbjct: 189 GKAGKMSNALHFFNQMKAAGLQPS 212


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 123/238 (51%), Gaps = 4/238 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK----GIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           I++N +C+       +   SE+L K    G  P+VV + T   GL ++     A++L   
Sbjct: 211 IMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQN 270

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           + R     +   +   I GLC+ G + E+ E+F+ ++      D+ +YS LIDG C+ GR
Sbjct: 271 LCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGR 330

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ A E+F  +    ++ ++ +YSI+I G   +G++DKA ++F +M+ + + P+V ++  
Sbjct: 331 VDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSI 390

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
           LI GF R  +    I+   +M   N  P A     ++    K++   N+L  F + ++
Sbjct: 391 LIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQK 448



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G CK      A  L   +  K    +    N +  GL +   ++ A ++F EM+  G+
Sbjct: 252 IKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGI 311

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  +Y+I IDG C+ G + ++ E+F+ +R      +I +YS LIDG CK GR++ ALE
Sbjct: 312 LPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALE 371

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +F  +    ++ DV +YSI+I G    G MD A   + +M  N  +P+   + +LI G+ 
Sbjct: 372 VFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYY 431

Query: 183 RINEPSKVIELLHKMKEKNVMPDA 206
           +  + +  ++    M++  + PD 
Sbjct: 432 KSKQFANALKEFRIMQKLGMWPDT 455



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+   ++ A  ++ EM + GI PDV  ++ L  G     +V++A ++F EM+  G
Sbjct: 286 VIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSG 345

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +Y+I IDG CK G + +++E+F  ++      D+ +YS LIDG C+ G ++ A+
Sbjct: 346 ILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAI 405

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQM----------------------------- 152
           + +  +           Y  +I G Y   Q                              
Sbjct: 406 KFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIY 465

Query: 153 ------DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                 +KA  L    +EN V  N  ++   IH   R + P K ++LL  M ++NV+PD 
Sbjct: 466 CRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDV 525

Query: 207 SIVSIVVDLLAK 218
              S ++   AK
Sbjct: 526 VNYSTLISCFAK 537



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+  C+    E AL L   ML + + PDVV ++TL     +    E+A  LF +M + G
Sbjct: 496 FIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVG 555

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + +TYTI I+    +  +  +  LF+ ++  +   D  AY+ L+ G C +G +  A 
Sbjct: 556 ITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRAR 615

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R     +VVTY+  I+      + ++AH L+  M+E  V P+ I +  LI  F
Sbjct: 616 ALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAF 675

Query: 182 IRINEPSKVIELLHKMK-EKNVMPDASIVSIVVD 214
               E ++   L  +MK E    P+  + + +++
Sbjct: 676 CNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLIN 709



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY K+K+   AL  +  M   G+ PD +  N +           +A  L ++ Q +G
Sbjct: 426 LIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENG 485

Query: 62  VAADTRTYTIFIDGLCKNGYIVE------------------------------------S 85
           V  +  +Y  FI  +C+ G + E                                    +
Sbjct: 486 VHFNPYSYNEFIHRICR-GSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKA 544

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           V LF  +  +    +++ Y+ LI+      ++++A  LF  +    +  D + Y+ ++ G
Sbjct: 545 VMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAG 604

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             N G+M +A  LF +M     +PNV+T+   I+ ++++N+ ++  +L  KMKE+ V PD
Sbjct: 605 FCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPD 664

Query: 206 ASIVSIVV 213
             + ++++
Sbjct: 665 QILYTMLI 672



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 39/257 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  +  N  +E A  ++      GI+ +++  N L   L E ++V+    LF+ + + 
Sbjct: 141 MLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKF 200

Query: 61  GVAADTRTYTIFID---------------------------------------GLCKNGY 81
           G   +  TYTI ++                                       GLCK G 
Sbjct: 201 GPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGL 260

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
              +  L + L      L+   ++ +I GLC+ G L+ A E+F  +    ++ DV +YSI
Sbjct: 261 FGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSI 320

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I G    G++D+A ++F +M  + + PN+ ++  LI GF +     K +E+  +MK   
Sbjct: 321 LIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSG 380

Query: 202 VMPDASIVSIVVDLLAK 218
           ++PD    SI++D   +
Sbjct: 381 ILPDVYSYSILIDGFCR 397



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 98/216 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK   ++ AL ++ EM + GI PDV  ++ L  G      ++ A K ++EM  +
Sbjct: 355 ILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSN 414

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             +     Y   I G  K+     +++ FR ++ L    D  A + ++   C+      A
Sbjct: 415 NFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKA 474

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L        +  +  +Y+  IH +      +KA  L   M +  V P+V+ + TLI  
Sbjct: 475 LALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISC 534

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           F +     K + L  KM +  +  +    +I+++L 
Sbjct: 535 FAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLF 570



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 36/203 (17%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +  + +++ A  L+  M    + PD + + +L  G     ++ RA  LFDEM R+
Sbjct: 565 ILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSRE 624

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + +  TYT FI+                    LK   + QA+                
Sbjct: 625 GCSPNVVTYTCFIN------------------EYLKLNKNNQAH---------------- 650

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
            +L+  +    +  D + Y+++I    N G+M++A  LF +M +E    PNV+ +  LI+
Sbjct: 651 -KLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLIN 709

Query: 180 GFIRINEPSKVIELLHKMKEKNV 202
            +I++N+  +  +L  +M+ K +
Sbjct: 710 SYIKLNKRDQAEKLYEEMRAKGL 732


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 115/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  + + A   Y EM  +GI PDVV ++++   L +   +++A ++ + M ++G
Sbjct: 198 VINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 257

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  + RTY   + G C +G + E++   + +     E D+   + L+D LCK+ R   A 
Sbjct: 258 VMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEAR 317

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F+S+ +  L  D+ TY  ++ G    G + + HDL   M  N + PN   F  LI  +
Sbjct: 318 KIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAY 377

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  + + +  KM+++ + P+A     V+D+L K
Sbjct: 378 AKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCK 414



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 2/237 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           IL+ G C     + AL L   M   G    PDVV++NT+  G F+    ++A+  + EM 
Sbjct: 160 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMF 219

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+  D  TY+  I  LCK   + +++E+  T+       + + Y+ ++ G C SG+L 
Sbjct: 220 DQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLT 279

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+     +    +  DVVT ++++  L  + +  +A  +F  M +  + P++ T+ TL+
Sbjct: 280 EAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLL 339

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            G+       ++ +LL  M    + P+  + +I++   AK E    ++  F+   +Q
Sbjct: 340 QGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQ 396



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 3/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           +LI   C+   ++        ++ KG + + +    L  GL    +   A  +    M +
Sbjct: 89  VLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQ 148

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  + TI + GLC      E++EL + +      C  D+  Y+ +I+G  K G  
Sbjct: 149 LGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDP 208

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A   +H +    ++ DVVTYS +I  L     MDKA ++   M +N V PN  T+ ++
Sbjct: 209 DKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSI 268

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +HG+    + ++ I  L  M    V PD    ++++D L KN 
Sbjct: 269 VHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNR 311



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 14  GALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
            A++ Y+ M   G   + P++  ++ L        +++  F     + + G   +  T+T
Sbjct: 64  AAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFT 123

Query: 71  IFIDGLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
             + GLC +    +++++    +  L C  ++ + + L+ GLC   R + ALEL   +P 
Sbjct: 124 PLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPD 183

Query: 130 --GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
             G    DVV Y+ +I+G + +G  DKA+  + +M +  + P+V+T+ ++I    +    
Sbjct: 184 DGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAM 243

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVV 213
            K +E+L+ M +  VMP+    + +V
Sbjct: 244 DKAMEVLNTMVKNGVMPNCRTYNSIV 269



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 35/194 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC + ++  A+     M S G++PDVV  N L   L +  +   A K+F+ M + G
Sbjct: 268 IVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF------------RTLRILKCELDIQA------ 103
           +  D  TY   + G    G +VE  +L                 IL C    Q       
Sbjct: 328 LKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAM 387

Query: 104 -----------------YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                            Y  +ID LCK GR+  A+     +    L  D++ Y+ +IHG 
Sbjct: 388 LVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGF 447

Query: 147 YNDGQMDKAHDLFL 160
               + +KA +L  
Sbjct: 448 CTCDKWEKAEELIF 461



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 5/172 (2%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYS 105
           E A  +FDE+ R G  A        +D + ++          R  R    E+  ++  YS
Sbjct: 29  EDARHVFDELLRRGKGATIYGLNRALDDVARHSPAAAVSRYNRMARAGADEVTPNLYTYS 88

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     + +T++ ++ GL  D +   A D+ L  M +
Sbjct: 89  VLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQ 148

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK--NVMPDASIVSIVVD 214
               PNV +   L+ G    N   + +ELL  M +   +  PD  + + V++
Sbjct: 149 LGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVIN 200


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 114/216 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+   ++ AL L+ EM+S G+ P+++ +N +  GLF   +   A +L+  + + G
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR + A 
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +     LV +  TY +M   +   G +++   LF  ME+N    +      ++   
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVREL 731

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  E ++    L  + EK+   +AS  S+ +DLL+
Sbjct: 732 LQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLS 767



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L S M S G+KPD V +NTL  G   + +++ A  LF EM   G
Sbjct: 517 LIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL        + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF+    N + PN  T+  +    
Sbjct: 637 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
           I      ++ +L   M++     D+ +++ +V +LL + EI+
Sbjct: 697 IGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEIT 738



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 118/223 (52%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  ++ A+  + +M+ +G+ P+++++ +L   L    + ++A +L  EM   G+  +T
Sbjct: 417 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNT 476

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   I   CK G ++ES +LF  +  +  + ++  YS LIDG C +G+++ A +L  S
Sbjct: 477 IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSS 536

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTY+ +I+G     +MD A  LF +M  + V+PN+IT+  ++ G      
Sbjct: 537 MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + +     + S  +I++  L KN ++  +L  F
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 639



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  + + A + Y EML + I PDVV ++++   L +   +++A ++   M ++G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   + G C +    E++   + +R    E D+  Y+ L+D LCK+GR   A 
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  D+ TY  ++ G    G + + H L   M  N + P+   F  LI  +
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAY 381

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM++  + P+      V+ +L K+
Sbjct: 382 AKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKS 419



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C+   ++        ++ KG + + +    L  GL    +   A  +    M  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
                D  + TI + GLC      E++EL   +   R      D+ +Y+ +I+G  K G 
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            + A   +H +    +  DVVTYS +I  L     MDKA ++   M +N V PN +T+ +
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF-TVHERQ 235
           ++HG+    +P + I  L KM+   V PD    + ++D L KN  S  +   F ++ +R 
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 236 EEVD 239
            E D
Sbjct: 332 LEPD 335



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + + A  L  EML +GI  + +  N++     +  +V  + KLFD M R G
Sbjct: 447 LIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  IDG C  G + E+ +L  ++  +  + D   Y+ LI+G C+  R++ AL
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +++TY+I++ GL++  +   A +L++ + ++     + T+  ++HG 
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 41/251 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC +++ + A+    +M S G++PDVV +N+L   L +  +   A K+FD M + G
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 62  VAADTRTYTIFIDGLCKNGYIVE-----------------------------------SV 86
           +  D  TY   + G    G +VE                                   ++
Sbjct: 332 LEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAM 391

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  +R      ++  Y  +I  LCKSG ++ A+  F  +    L  +++ Y+ +IH L
Sbjct: 392 LVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL 451

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIELLHKMKEKNVM 203
               + DKA +L L+M +  +  N I F ++IH      R+ E  K+ +L+ ++    V 
Sbjct: 452 CIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRI---GVK 508

Query: 204 PDASIVSIVVD 214
           P+    S ++D
Sbjct: 509 PNVITYSTLID 519



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 27/265 (10%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C +K    A+++    M      PDV     L  GL + ++ + A +L   M  D
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 187

Query: 61  ---GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              G A D  +YT  I+G  K G   ++   +  +   +   D+  YS +I  LCK   +
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAM 247

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A+E+  ++ +  ++ + +TY+ ++HG  +  Q  +A      M  + V P+V+T+ +L
Sbjct: 248 DKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSL 307

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASI----------------VSIVVDLLAKNEI 221
           +    +    ++  ++   M ++ + PD +                 +  ++DL+ +N I
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367

Query: 222 S-----LNSLPSFTVHERQEEVDES 241
                  N L     + +QE+VDE+
Sbjct: 368 HPDHHVFNIL--ICAYAKQEKVDEA 390



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 6/173 (3%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL--KCELDIQAYS 105
           E A  +FDE+ R G  A        +  + ++          R  R    K    +  Y 
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYG 91

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     + +T++ ++ GL  D +   A D+ L  M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK---NVMPDASIVSIVVD 214
            +  P+V +   L+ G    N   + +ELLH M +       PD    + V++
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204



 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 24/120 (20%), Positives = 55/120 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKN   + AL ++  +    ++ +    N +   L ++ + + A  LF     +
Sbjct: 621 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSN 680

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY +  + +   G + E  +LF ++    C +D    + ++  L + G +  A
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 106/199 (53%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y +ML  G  PDV+ +N +    F + + +R ++L DEM +DG + D  TY I +  L 
Sbjct: 244 VYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLA 303

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
                + ++ L   +R +  E  +  ++ L+DGL ++G+LE        + +     DVV
Sbjct: 304 TGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVV 363

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y++MI G  + G+++KA ++F +M E    PNV T+ ++I GF    +  +   LL +M
Sbjct: 364 CYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEM 423

Query: 198 KEKNVMPDASIVSIVVDLL 216
           + +   P+  + S +V+ L
Sbjct: 424 ESRGCNPNFVVYSTLVNNL 442



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%)

Query: 14  GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
            ALNL + M   G++P V+   TL  GL    ++E      DEM + G   D   YT+ I
Sbjct: 310 AALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMI 369

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
            G    G + ++ E+F+ +       ++  Y+ +I G C +G+ + A  L   +      
Sbjct: 370 TGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCN 429

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
            + V YS +++ L N G++ +AH++  DM E  
Sbjct: 430 PNFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKG 462



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  +  ++E       EM+  G  PDVV +  +  G     ++E+A ++F EM   G
Sbjct: 333 LVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKG 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I G C  G   E+  L + +    C  +   YS L++ L  +G++  A 
Sbjct: 393 QLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNAGKVLEAH 452

Query: 122 EL 123
           E+
Sbjct: 453 EI 454



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           +L DEM +DG      T+ + I    + G   + VE F   +         +Y+ ++  L
Sbjct: 173 RLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSL 232

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
               + ++   ++  +       DV+TY+I++   +  G+ D+ + L  +M ++  +P++
Sbjct: 233 LGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDL 292

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+  L+H     N+P   + LL  M+E  V P     + +VD L++
Sbjct: 293 YTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSR 339


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK   +E A  +   M S G+KP+VV +NT+  GL    + E+A +L  EM  + 
Sbjct: 301 VLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDND 360

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I +D  C+NG +   +EL   +    C  D+  Y+ +I+G CK G ++ A+
Sbjct: 361 CPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAV 420

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+       + ++Y+I++ GL +  +   A DL   M E   +PN +TF T+I+  
Sbjct: 421 MLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFL 480

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IELL +M      PD    S V+D L K
Sbjct: 481 CKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGK 517



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   I+ A+ L   M + G +P+ + +  +  GL    +   A  L  +M   G
Sbjct: 406 VINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG 465

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  T+   I+ LCK G + +++EL + + +  C  D+ +YS +IDGL K+G+ + AL
Sbjct: 466 CSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEAL 525

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    +  + + YS +   L  +G++++   +F ++++  +  + + +  +I   
Sbjct: 526 ELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSL 585

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IE L  M     MP+ S  +I++  LA 
Sbjct: 586 CKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLAS 622



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +C+N  +   + L  +ML  G  PDV+ + T+  G  +   ++ A  L   M   
Sbjct: 370 ILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAAC 429

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T +YTI + GLC     V++ +L   +    C  +   ++ +I+ LCK G +E A
Sbjct: 430 GCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQA 489

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       D+++YS +I GL   G+ D+A +L   M    ++PN I + ++   
Sbjct: 490 IELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 549

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    ++VI++   +++  +  DA + + V+  L K
Sbjct: 550 LSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCK 587



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C  K      +L  EM+  G  P+VV  NTL   L      ER  ++  +M   G
Sbjct: 231 VLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHG 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R Y   +DG+CK G++  + E+   +     + ++  Y+ ++ GLC + R E A 
Sbjct: 291 CTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAE 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +       D VT++I++     +G + +  +L   M E+   P+VIT+ T+I+GF
Sbjct: 351 ELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGF 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + LL  M      P+    +IV+  L   E
Sbjct: 411 CKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAE 449



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 101/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+N   E    + ++M+  G  PD+ ++ T+  G+ +   +E A ++ D M   G
Sbjct: 266 LIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y   + GLC      ++ EL   +    C LD   ++ L+D  C++G +   +
Sbjct: 326 LKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVI 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +     V DV+TY+ +I+G   +G +D+A  L   M      PN I++  ++ G 
Sbjct: 386 ELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGL 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     +L+ +M E+   P+    + V++ L K
Sbjct: 446 CSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCK 482



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 96/203 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C  +    A +L S+M+ +G  P+ V  NT+   L +   VE+A +L  +M  +
Sbjct: 440 IVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLN 499

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D  +Y+  IDGL K G   E++EL   +       +   YS +   L K GR+   
Sbjct: 500 GCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRV 559

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F ++    + +D V Y+ +I  L   G  D+A +    M  +   PN  T+  LI G
Sbjct: 560 IQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRG 619

Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
                   +  E+L ++  K  +
Sbjct: 620 LASEGFVKEAQEMLTELCSKGAL 642



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 5/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF---IGLFEIHQVERAFKLFDEMQ 58
           ++   C    I  AL++  EM  +G  P   +++ +               A ++  ++ 
Sbjct: 121 VVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLH 180

Query: 59  RDGVAADTRTYTIFIDGLC-KNGYIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGR 116
             G A D     + ++ +C + G + E++ L R L     C+ D+ +Y+ ++ GLC + R
Sbjct: 181 GRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKR 240

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
                +L   + R     +VVT++ +I  L  +G  ++ H +   M ++   P++  + T
Sbjct: 241 WGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYAT 300

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++ G  +        E+L +M    + P+    + V+  L   E
Sbjct: 301 VLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAE 344


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 3/230 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CKN  I+  L L+ E+L KG+KP    +  +  GLF   +   A ++F EM   G
Sbjct: 567 LVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESG 626

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY+I + GLC+N    E++ +F+ L  +  + DI   + +I  + K+ R E A 
Sbjct: 627 IAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAE 686

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF S+P   LV  V TY+IM+  L  +G +++A  +F  M ++ ++P       ++   
Sbjct: 687 GLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTL 746

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLNSLPS 228
           +   E  K    + ++  K+++ +AS  S+++ L +   K+   LN LP+
Sbjct: 747 LEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKGKHREHLNLLPA 796



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 118/213 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + ++ A  +  +M+  G++PD V +NTL  G   + Q ++A ++F EM   G
Sbjct: 252 VIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRG 311

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +T T + F+  LCK+G I E+ E F ++     +L+I +YS L+ G   +G L    
Sbjct: 312 VIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMS 371

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ + R  +V +   ++I+++G    G + +A  +F DM++  + P+V+T+  +IH F
Sbjct: 372 NLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAF 431

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R+      ++  + M +K V P+ ++   ++ 
Sbjct: 432 CRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQ 464



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           ILI+  C+ + ++ A   +  +L +G+K DV++ ++L  GL +  + + A   LF  M  
Sbjct: 108 ILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPE 167

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRL 117
            G   D  +Y+  +  +C +G    ++++ R    +   C  ++  YS ++ GL K G++
Sbjct: 168 LGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKV 227

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +LFH + +  +  +VVTY+ +IH L     +DKA  +   M  N V P+ +T+ TL
Sbjct: 228 GEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTL 287

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           IHG+  + +  + + +  +M  + V+P+    S  V  L K+
Sbjct: 288 IHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKH 329



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C + ++  A  L  E+ +KG+ P ++   +L   L +  +V  A ++FD + R G
Sbjct: 462 LIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTG 521

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             AD   +T  IDG C  G + E+  +   +  +  E DI  Y  L++G CK+GR++  L
Sbjct: 522 EKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGL 581

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L    +     TY I++ GL++ G+   A ++F +M E+ +A  + T+  L+ G 
Sbjct: 582 ILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGL 641

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R N   + I +  K+   NV  D  I++I++  + K
Sbjct: 642 CRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFK 678



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++  A  ++  M+S GI+PD+V + TL  G  +  +++    LF E+   G
Sbjct: 532 LIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKG 591

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   T TY I +DGL   G    + E+F+ +      + I  YS L+ GLC++   E A+
Sbjct: 592 VKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAI 651

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L    +  D+V  +IMI  ++   + ++A  LF  + +  + P V T+  ++   
Sbjct: 652 TVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENL 711

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEI 221
           I+     +   +   M +  + P +  ++++V  LL K EI
Sbjct: 712 IKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEI 752



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 111/228 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +C+   ++ A++ ++ M+ KG++P+  ++  L  G      + +A +L  E++  G
Sbjct: 427 VIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG 486

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     ++   I+ LCK G + E+  +F  +     + D+  ++ LIDG C  G++  A 
Sbjct: 487 LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAF 546

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++    +  D+VTY  +++G   +G++D    LF ++    V P   T+G ++ G 
Sbjct: 547 RVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGL 606

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
                 +   E+  +M E  +       SI++  L +N  +  ++  F
Sbjct: 607 FHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVF 654



 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 9/199 (4%)

Query: 15  ALNLYSEMLSKGIKPDVVI-----HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           A+ L++ M S G  P V +     ++ L        +++ AF  F  + R G+ AD    
Sbjct: 83  AVALFNRM-STGTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVV 141

Query: 70  TIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           +  + GLC      E+V+ LF  +  L C  D  +YS ++  +C  GR + AL++     
Sbjct: 142 SSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAV 201

Query: 129 R--GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +  G    +VV YS ++HGL+ +G++ +A DLF +M +  V PNV+T+ ++IH   +   
Sbjct: 202 KQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARA 261

Query: 187 PSKVIELLHKMKEKNVMPD 205
             K   +L +M    V PD
Sbjct: 262 VDKAQGILRQMVGNGVQPD 280



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 106/216 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NGY K   +  A+ ++ +M  +G+ PDV+ +  +      +  ++ A   F+ M   
Sbjct: 391 ILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDK 450

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   Y   I G C +G +V++ EL   +R       I +++ LI+ LCK GR+  A
Sbjct: 451 GVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEA 510

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  + R    ADV  ++ +I G    G+M +A  +   M    + P+++T+GTL++G
Sbjct: 511 QRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNG 570

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +       + L  ++  K V P      I++D L
Sbjct: 571 CCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGL 606



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY     +    NL++ M+  GI P+  + N L  G  +   V  A  +F++MQ+ G
Sbjct: 357 LLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRG 416

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I   C+ G + ++++ F  +     E +   Y CLI G C  G L  A 
Sbjct: 417 LNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAE 476

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    L   +++++ +I+ L  +G++ +A  +F  +       +V  F +LI G+
Sbjct: 477 ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             I + S+   +   M    + PD      +V+   KN
Sbjct: 537 CLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKN 574



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++   C +   + AL++    + +G     +VV+++T+  GLF+  +V  A  LF EM +
Sbjct: 180 VLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQ 239

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            GV  +  TY   I  LCK   + ++  + R +     + D   Y+ LI G    G+ + 
Sbjct: 240 QGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQ 299

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ +F  +    ++ + VT S  +  L   G++++A + F  M       N+I++ TL+H
Sbjct: 300 AVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLH 359

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G+        +  L + M    ++P+  + +I+V+  AK
Sbjct: 360 GYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAK 398



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+N   E A+ ++ ++ +  +K D+VI N +   +F+  + E A  LF  +   
Sbjct: 636 ILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDY 695

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+    +TYTI ++ L K G + E+  +F  +
Sbjct: 696 GLVPTVQTYTIMMENLIKEGSVEEAEGVFSVM 727


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 121/237 (51%), Gaps = 2/237 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           I++ G C N   + AL+L+  M  +G    P+VV +NT+  G F+  +  +A  LF EM 
Sbjct: 233 IILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMT 292

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R GV  D  TY + ID LCK   + ++  + R +     + D   Y+C+I G    GRL+
Sbjct: 293 RQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLK 352

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A ++F  +    L+ ++V  +  +  L   G+  +A ++F  M      P+++++ TL+
Sbjct: 353 EAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLL 412

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           HG+      + +I L + MK   +  D  + +I++   AK  +  +++  FT  ++Q
Sbjct: 413 HGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQ 469



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY KN  I   L L+ EM  KG+KP+ V +  +  GLF   +   A K F EM   G
Sbjct: 622 LLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y I + GLC+N    E++ LF+ L  +  +  I   + +I+ + K  R E A 
Sbjct: 682 TTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAK 741

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    L+ +  TY +MI  L  DG ++ A+++F  ME++ + P       +I   
Sbjct: 742 ELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRML 801

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E +K    L K+  K ++ +AS  S+++ L ++
Sbjct: 802 LEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSR 838



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 111/208 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK + ++ A  +  +M + G +PD V +N +  G   + +++ A K+F +M+  
Sbjct: 305 LIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSR 364

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +      F+  LCK+G   E+ E+F ++     + DI +Y  L+ G    G     
Sbjct: 365 GLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADM 424

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+S+    + AD   ++I+IH     G +D A  +F +M++  V+P+V+T+ T+I  
Sbjct: 425 IGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISA 484

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
           F R+   +  +E  ++M  + + P+ ++
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAV 512



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I G+C +  +  A  L SEM++KGI +PD+V  N++   L +  +V  A  +FD +   
Sbjct: 516 IIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDI 575

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+T  IDG C  G + ++ ++   + ++  E DI  YS L+DG  K+GR+   
Sbjct: 576 GERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDG 635

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  + R  +  + VTY IM+ GL+  G+   A   F +M E+     V  +G ++ G
Sbjct: 636 LTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGG 695

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   + I L  K+   NV    +I++ +++ + K
Sbjct: 696 LCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  E   A +L+ EM  +G+KPDVV +N +   L +   +++A  +  +M  +G
Sbjct: 271 VIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNG 330

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY   I G    G + E+ ++FR ++      +I   +  +  LCK GR + A 
Sbjct: 331 AQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAA 390

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F S+       D+V+Y  ++HG  ++G       LF  M+ N +A +   F  LIH +
Sbjct: 391 EIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAY 450

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       + +  +M+++ V PD    S V+   ++
Sbjct: 451 AKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSR 487



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 119/258 (46%), Gaps = 36/258 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ Y K   ++ A+ +++EM  +G+ PDVV ++T+      + ++  A + F++M   
Sbjct: 445 ILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVAR 504

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------------------------RILK 96
           G+  +T  Y   I G C +G +V++ EL   +                        R++ 
Sbjct: 505 GIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMD 564

Query: 97  C------------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
                          D+  ++ LIDG C  G+++ A ++  ++    +  D+VTYS ++ 
Sbjct: 565 AHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLD 624

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G + +G+++    LF +M+   V PN +T+G ++ G  R        +  H+M E     
Sbjct: 625 GYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTV 684

Query: 205 DASIVSIVVDLLAKNEIS 222
             SI  I++  L +N  +
Sbjct: 685 TVSIYGIILGGLCRNNCA 702



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 1/235 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY         + L++ M S GI  D  + N L     +   V+ A  +F EMQ+ G
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY+  I    + G + +++E F  +     + +   Y  +I G C  G L  A 
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL   +  +G+   D+V ++ +I+ L  DG++  AHD+F  + +    P+VITF +LI G
Sbjct: 531 ELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDG 590

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           +  + +  K  ++L  M+   V  D    S ++D   KN    + L  F   +R+
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRK 645



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK+  +  A +++  +   G +PDV+   +L  G   + ++++AFK+ D M+  G
Sbjct: 552 VINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVG 611

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY+  +DG  KNG I + + LFR ++    + +   Y  ++ GL ++GR   A 
Sbjct: 612 VETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAAR 671

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH +        V  Y I++ GL  +   D+A  LF  +    V  ++    T+I+  
Sbjct: 672 KKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAM 731

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  EL   +    ++P+ S   +++  L K+
Sbjct: 732 YKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKD 769



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY     ++ A  ++ +M S+G+ P++VI N+    L +  + + A ++FD M   G
Sbjct: 341 MIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKG 400

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y   + G    G+  + + LF +++      D + ++ LI    K G ++ A+
Sbjct: 401 HKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAM 460

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  DVVTYS +I      G++  A + F  M    + PN   + ++I GF
Sbjct: 461 LIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGF 520

Query: 182 IRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAKN 219
                  K  EL+ +M  K +  PD    + V++ L K+
Sbjct: 521 CMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKD 559



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 51/220 (23%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCK----NGYIVESVELFRTLRILKCE------- 98
           A  +FDE+ R       R+   F+  L +    +  I +   L   L    C        
Sbjct: 93  AHHMFDELFRQATPVPGRSLNGFLTALARATSSSACITDGPALALALFNRVCREQAGPRV 152

Query: 99  --LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL------------------------ 132
             L +  YS L+D  C++ R ++ L LF  + R  L                        
Sbjct: 153 VPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAV 212

Query: 133 ------------VADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLI 178
                       V +V +YSI++ GL ++    +A DLF  M  E  A +PNV+ + T+I
Sbjct: 213 NVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVI 272

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           HGF +  E  K   L H+M  + V PD    ++++D L K
Sbjct: 273 HGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCK 312



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 51/92 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C+N   + A+ L+ ++ +  +K  + I NT+   ++++ + E A +LF  +   
Sbjct: 691 IILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISAS 750

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+  +  TY + I  L K+G + ++  +F ++
Sbjct: 751 GLLPNESTYGVMIINLLKDGAVEDANNMFSSM 782


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 116/219 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI  +  +   E    ++ EM  +G +PD+ + NT    +F+   VE+   +F++++  G
Sbjct: 502 LIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYG 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D R+Y+I I GL K G   E+  +F  ++     LD +AY+ ++DG CKSG+L+ A 
Sbjct: 562 FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAY 621

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +   V TY  +I GL    ++D+A+ LF + +   +  NVI + +LI GF
Sbjct: 622 EVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGF 681

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            ++    +   +L +M +K + P+    + ++D L K E
Sbjct: 682 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAE 720



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 3/198 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   ++ A  L+ E  SKGI+ +V+++++L  G  ++ +++ A+ + +EM + G
Sbjct: 642 IIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG 701

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D L K   I E++  F++++ +KC  +   YS LI+GLC+  +   A 
Sbjct: 702 LTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAF 761

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  LV +VVTY+ MI GL   G +  A  LF   + N   P+  +F  LI G 
Sbjct: 762 VFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGM 821

Query: 182 IRINEPSKVIELLHKMKE 199
              N   + IE  H  +E
Sbjct: 822 SHAN---RAIEAYHVFEE 836



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  ++E    ++ ++   G  PDV  ++ L  GL +  Q      +F  M
Sbjct: 533 LLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAM 592

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           ++ G A D R Y   +DG CK+G + ++ E+   +++ +    +  Y  +IDGL K  RL
Sbjct: 593 KQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRL 652

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       +  +V+ YS +I G    G++D+A+ +  +M +  + PNV T+ +L
Sbjct: 653 DEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 712

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E ++ +     MKE    P+    SI+++ L +
Sbjct: 713 MDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCR 753



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+CK+ +++ A  +  EM  K + P V  + ++  GL +I +++ A+ LF+E +  G
Sbjct: 607 VVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKG 666

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   +       ++  ++ L+D L K+  +  AL
Sbjct: 667 IELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEAL 726

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       +  TYSI+I+GL    + +KA   + +M++  + PNV+T+ T+I G 
Sbjct: 727 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGL 786

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            ++   +    L  + K     PDA+  + +++
Sbjct: 787 AKVGNITDACSLFERFKANGGTPDAASFNALIE 819



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK K+ E A  ++     +G  P+ V + +L  GL +   V+ A++LF+ M   
Sbjct: 431 IMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDT 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  A+   YT  I     +G   +  ++F+ +    C+ D+   +  +D + K+G +E  
Sbjct: 491 GHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKG 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +     + DV +YSI+IHGL   GQ  +   +F  M++   A +   +  ++ G
Sbjct: 551 RAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDG 610

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  K  E+L +MK K V P  +    ++D LAK
Sbjct: 611 FCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAK 648



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K   ++ A  L+  ML  G   + V++ +L    F   + E   K+F EM R G
Sbjct: 467 LIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D      ++D + K G + +   +F  ++      D+++YS LI GL K+G+     
Sbjct: 527 CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETS 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH++ +     D   Y+ ++ G    G++DKA+++  +M+   V P V T+G++I G 
Sbjct: 587 SIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGL 646

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I+   +   L  + K K +  +  + S ++D   K
Sbjct: 647 AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGK 683



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  +     +++  M  +G   D   +N +  G  +  ++++A+++ +EM+  
Sbjct: 571 ILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK 630

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     TY   IDGL K   + E+  LF   +    EL++  YS LIDG  K GR++ A
Sbjct: 631 RVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEA 690

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  L  +V T++ ++  L    ++++A   F  M+E   +PN  T+  LI+G
Sbjct: 691 YLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILING 750

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ + +K      +M+++ ++P+    + ++  LAK
Sbjct: 751 LCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAK 788



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 107/241 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   + + ++ A  + + M     +P    +  L   + E  Q ERA +L  +MQ  G
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVG 212

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  +T  +  L + G +  ++ L   ++    E DI  Y+  ID   K+G +++A 
Sbjct: 213 YEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 272

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH L    L  D V+Y+ MI  L   G++ +A +LF  ME     P    + T+I G+
Sbjct: 273 KFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGY 332

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
               +     +LL ++KE+  +P     + ++  L K      +L  F   ++  E + S
Sbjct: 333 GSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSS 392

Query: 242 N 242
            
Sbjct: 393 T 393



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 1/216 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI    + ++ E AL L  +M   G +  V +  TL   L    +VE A  L DE++  
Sbjct: 187 VLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGS 246

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   Y + ID   K G +  + + F  L+    + D  +Y+ +I  LCK+GRL  A
Sbjct: 247 CLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEA 306

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +     V     Y+ MI G  + GQ + A+ L   ++E    P+V++F +++  
Sbjct: 307 EELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTC 366

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +  +  + + L   MK K+  P++S  +I++D+L
Sbjct: 367 LGKKRKVDEALTLFEAMK-KDAEPNSSTYNIIIDML 401



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  C   ++E A  +  EM   G+ P+++  N +   L +  + E A+++F+   + 
Sbjct: 396 IIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQR 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ TY   IDGL K G + ++  LF  +       +   Y+ LI      GR E  
Sbjct: 456 GCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDG 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  + R     D+   +  +  ++  G ++K   +F D++     P+V ++  LIHG
Sbjct: 516 HKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHG 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  +   + H MK++    DA   + VVD   K+
Sbjct: 576 LTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKS 614



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 1/211 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K ++++ AL L+ E + K  +P+   +N +   L    +VE A+ + DEM+  G+  +  
Sbjct: 369 KKRKVDEALTLF-EAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLL 427

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T  I +D LCK      + E+F T     C  +   Y  LIDGL K G ++ A  LF ++
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                 A+ V Y+ +I   +  G+ +  H +F +M      P++    T +    +  + 
Sbjct: 488 LDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDV 547

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            K   +   +K    +PD    SI++  L K
Sbjct: 548 EKGRAIFEDIKGYGFLPDVRSYSILIHGLTK 578



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 64/120 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+ ++   A   + EM  +G+ P+VV + T+  GL ++  +  A  LF+  + +
Sbjct: 746 ILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKAN 805

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  ++   I+G+      +E+  +F   R+  C ++++A   L+D L K+  LE A
Sbjct: 806 GGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAECLEQA 865



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 77/182 (42%), Gaps = 1/182 (0%)

Query: 42  FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI 101
           F  H +    K+ +EM   G           +  L +   + ++  +   +R LK     
Sbjct: 123 FLSHDLAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAF 182

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
            AY+ LI  + ++ + E ALEL   +        V  ++ ++  L  +G+++ A  L  +
Sbjct: 183 SAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDE 242

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNE 220
           ++ + + P+++ +   I  F +        +  H++K + + P D S  S++  L     
Sbjct: 243 VKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGR 302

Query: 221 IS 222
           +S
Sbjct: 303 LS 304


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 132/244 (54%), Gaps = 6/244 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++  Y + +++E A+  ++ M    + P++   N LF  L +   V +A ++FD   +D
Sbjct: 95  IIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQEIFDS-SKD 153

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D++TYTI ++G  K   + ++ E+FR +  + C  DI  Y  ++D LCK+GR++ A
Sbjct: 154 RFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEA 213

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++   +   +       YS++IH    + +++ A D FL ME+N V  +V  +  LI  
Sbjct: 214 LDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGA 273

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEISLNSLPSFTVHERQEEVD 239
           F ++N+   V  +L++M  K + P++  ++I++ +L+A+ E       +F V  R  +V 
Sbjct: 274 FCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETD----EAFRVFRRMIKVC 329

Query: 240 ESNV 243
           E + 
Sbjct: 330 EPDA 333



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 100/184 (54%), Gaps = 3/184 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ Y     IE A++ +  M   G+K DV  +N L     ++++ +  +++ +EM   
Sbjct: 234 VLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYK 293

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEI 119
           G+  ++RT  I ++ L   G   E+  +FR  R++K CE D   Y+ +I   C+   LE+
Sbjct: 294 GMQPNSRTLNIILNNLIARGETDEAFRVFR--RMIKVCEPDADTYTMMIKMFCERNELEM 351

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+++  + +   V  + T+S++I+GL  +G +  A  +  DM E  + P+ +TFG L H
Sbjct: 352 ALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRH 411

Query: 180 GFIR 183
             I+
Sbjct: 412 LLIK 415



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 31  VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
           V  ++T+   L +I Q +  + L + M+R  +  +  T+ I +    +   + E+V  F 
Sbjct: 56  VRAYHTMIESLAKIRQYQIMWDLINAMKRKRML-NVETFCIIMRKYARAQKLEEAVYTFN 114

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            +       ++ A++ L   LCKS  +  A E+F S  +   V D  TY+I++ G     
Sbjct: 115 VMEKYDVPPNLAAFNGLFSALCKSKNVRKAQEIFDS-SKDRFVPDSKTYTILLEGWGKTP 173

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            + KA ++F +M +   +P+++T+G ++    +     + ++++ +M      P + I S
Sbjct: 174 NLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYS 233

Query: 211 IVV 213
           +++
Sbjct: 234 VLI 236



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK   ++ AL++  EM     KP   I++ L       +++E A   F  M+++
Sbjct: 199 IMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKN 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV AD   Y   I   CK         +   +     + + +  + +++ L   G  + A
Sbjct: 259 GVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEA 318

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  + + V   D  TY++MI       +++ A  ++  M++    P++ TF  LI+G
Sbjct: 319 FRVFRRMIK-VCEPDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLING 377

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                + S    +L  M EK + P       +  LL K
Sbjct: 378 LCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIK 415


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 118/257 (45%), Gaps = 36/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ ++ ++  AL ++  M   G  P V   N L +GL E  Q+E+A ++ DEM   G
Sbjct: 575 IIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAG 634

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TYT  + G    G   ++ E F  L+    ELD+  Y  L+   CKSGR++ AL
Sbjct: 635 ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSAL 694

Query: 122 ELF-----HSLPRGVLV------------------------------ADVVTYSIMIHGL 146
            +        +PR   V                               D+ TY+  I+  
Sbjct: 695 AVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINAC 754

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M +A     +ME   V PN+ T+ TLIHG+ R + P K ++   +MK   + PD 
Sbjct: 755 CKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDK 814

Query: 207 SIV-SIVVDLLAKNEIS 222
           ++   ++  LL++  ++
Sbjct: 815 AVYHCLMTSLLSRASVA 831



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ + K+   A  ++ +++  G+KPDVV++N +      +  ++RA +   EMQ++
Sbjct: 504 MLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKE 563

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                TRT+   I G  ++G +  ++E+F  +R   C   +  ++ LI GL +  ++E A
Sbjct: 564 RHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKA 623

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  +  TY+ ++HG  + G   KA + F  ++   +  +V T+  L+  
Sbjct: 624 VEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKA 683

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       + +  +M  + +  +  + +I++D  A+
Sbjct: 684 CCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWAR 721



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  ++  AL +   M   GIK ++  ++ L  G   +     AF +F+++ +DG
Sbjct: 470 LINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I   C  G +  ++   + ++  +     + +  +I G  +SG +  AL
Sbjct: 530 LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +     +  V T++ +I GL    QM+KA ++  +M    ++PN  T+ T++HG+
Sbjct: 590 EIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGY 649

Query: 182 IRINEPSKVIELLHKMK 198
             + +  K  E   K+K
Sbjct: 650 ASLGDTGKAFEYFTKLK 666



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 95/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  +C+   +  A  L  EM  +GI   + I++T+  G   I   E+   +FD ++  G
Sbjct: 400 IIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECG 459

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   I+   K G + +++E+ + + +   + +++ YS LI+G  +      A 
Sbjct: 460 FTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAF 519

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L  DVV Y+ +I      G MD+A     +M++    P   TF  +IHGF
Sbjct: 520 AVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGF 579

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R  +  + +E+   M+    +P
Sbjct: 580 ARSGDMRRALEIFDMMRWSGCIP 602



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 91/204 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y   +++E AL+   +M  +GI+  +V ++ L  G  +I   E A   F E +   
Sbjct: 330 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERH 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   I   C+   + ++  L R +     +  I  Y  ++DG    G  E  L
Sbjct: 390 TTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCL 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L        V++Y  +I+     G++ KA ++   ME   +  N+ T+  LI+GF
Sbjct: 450 IVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGF 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +R+ + +    +   + +  + PD
Sbjct: 510 VRLKDWANAFAVFEDVVKDGLKPD 533



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 99/219 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+ K  + E A + + E   +    + +I+  +     +   + +A  L  EM+ +
Sbjct: 364 ILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEE 423

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A    Y   +DG    G   + + +F  L+       + +Y CLI+   K G++  A
Sbjct: 424 GIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKA 483

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   +    +  ++ TYS++I+G         A  +F D+ ++ + P+V+ +  +I  
Sbjct: 484 LEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRA 543

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F  +    + I  + +M+++   P       ++   A++
Sbjct: 544 FCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARS 582



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 101/229 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  Y +  ++  A   +  M ++GI+P   ++ +L         +E A     +M+ +
Sbjct: 294 LMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEE 353

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY+I + G  K      +   F+  +     L+   Y  +I   C++  +  A
Sbjct: 354 GIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQA 413

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    + A +  Y  M+ G    G  +K   +F  ++E    P+VI++G LI+ 
Sbjct: 414 EALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINL 473

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           +I+I + SK +E+   M+   +  +    S++++   + +   N+   F
Sbjct: 474 YIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVF 522



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 2/126 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ +  ++  A  L  +M  +G++PD+  + +      +   ++RA K   EM+  
Sbjct: 714 ILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVV 773

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  + +TYT  I G  +     ++++ F+ ++    + D   Y CL+  L    R  +A
Sbjct: 774 GVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLS--RASVA 831

Query: 121 LELFHS 126
            E  +S
Sbjct: 832 EEYIYS 837


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N YC    +E A NL ++M + G+ PD   +N L  GL + HQ+++AF    +    
Sbjct: 405 ILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEV 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +  I ID  CK   +  ++ELF+ +     + D   Y  LI+GL   G   +A
Sbjct: 465 GGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLA 524

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  + +  +  +V  Y+IM+H L   G + +A  +FL M +  + P+++T+ TLI+ 
Sbjct: 525 EELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYW 584

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             + +   + ++L   M+ K V PD+
Sbjct: 585 LGKNSRAMEALDLFKDMRTKGVEPDS 610



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 115/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +   I+ A  + S M + G +P VV +N L      I  +E+A  L  +M+  G
Sbjct: 371 LISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSG 430

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y   + GLCK   + ++         +    DI + + LID  CK  +++ AL
Sbjct: 431 VNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSAL 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +    + AD VTY  +I+GL++ G  + A +LF  M +  + PNV  +  ++H  
Sbjct: 491 ELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHL 550

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            ++ +  +  ++   M +K ++PD    + ++  L KN  ++ +L  F
Sbjct: 551 CKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLF 598



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I+  CK   +  AL +  +M  KG  PDVV + T+   L    +   A  L++EM + 
Sbjct: 265 IYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKM 324

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D       I GLCKN  + E+ EL   +  L  EL +  Y+ LI G  ++G ++ A
Sbjct: 325 GLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKA 384

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +        VVTY+I+++     G M+KA +L   ME + V P+  ++  L+ G
Sbjct: 385 YTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKG 444

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + ++  K    +    E     D    +I++D   K
Sbjct: 445 LCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCK 482



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+  C++  IE    L ++M   G  PD+   N     L + +++  A ++ ++M+  G
Sbjct: 231 WISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKG 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  +  LC N    E+V L+  +  +  + D+ A   LI GLCK+ ++E A 
Sbjct: 291 TIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAF 350

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +   V  Y+ +I G +  G +DKA+ +   M  N   P V+T+  L++ +
Sbjct: 351 ELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHY 410

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             I    K   L+ KM+   V PD
Sbjct: 411 CTIGMMEKAENLITKMETSGVNPD 434



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 95/210 (45%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C NK    A+ L+ EM+  G+KPDVV    L  GL +  +VE AF+L   M    +    
Sbjct: 306 CNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSV 365

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             Y   I G  + G I ++  +   +R   CE  +  Y+ L++  C  G +E A  L   
Sbjct: 366 SIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITK 425

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D  +Y+ ++ GL    Q+DKA     D  E     ++++   LI  F ++ +
Sbjct: 426 METSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKK 485

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
               +EL  +M  K +  DA     +++ L
Sbjct: 486 VKSALELFKEMDYKGMQADAVTYGTLINGL 515



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++GY +  + +  +  + EM+  G +   + +N     L +    +   K +      
Sbjct: 160 ILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRYIGVLIKNCCFDLVEKYYGMALSK 219

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY+ +I  LC++  I    EL   +       DI A +  ID LCK  RL  A
Sbjct: 220 GLCLTPFTYSRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDA 279

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++   +     + DVVTY+ ++  L N+ +  +A  L+ +M +  + P+V+  G LI G
Sbjct: 280 LQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFG 339

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             + ++  +  EL  +M   N+    SI + ++
Sbjct: 340 LCKNSKVEEAFELASRMLSLNIELSVSIYNALI 372



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 8/215 (3%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLF----IGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           ++G   L SE L       V +H +L+     G     + +     FDEM   G      
Sbjct: 132 VDGNFALLSEFLGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGI 191

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEIALELFH 125
            Y  +I  L KN    + VE +  + + K  C L    YS  I  LC+S R+E+  EL  
Sbjct: 192 DYNRYIGVLIKNC-CFDLVEKYYGMALSKGLC-LTPFTYSRWISALCQSNRIELVEELLA 249

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            + R     D+   +I I  L    ++  A  +   M      P+V+T+ T++       
Sbjct: 250 DMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNK 309

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             S+ + L  +M +  + PD      ++  L KN 
Sbjct: 310 RFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNS 344



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  CK  +++ A  ++  M+ K I PD+V +NTL   L +  +   A  LF +M+  
Sbjct: 545 IMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTK 604

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF 89
           GV  D+ T+   I+GL   G    + E++
Sbjct: 605 GVEPDSLTFKYLINGLLDEGRSTLAYEVW 633


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 113/219 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ + +  A  L   M   G+ P+++ +NTL  G   I  +++A  LF++M+  G
Sbjct: 297 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 356

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY I I G  +        ++ R +           Y+ L+D L +S  +E A 
Sbjct: 357 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 416

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +++ S+ +  LVAD+  Y ++IHGL   G M +A  LF  ++E  + PN + + T+I+G+
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 476

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + LL +M E  ++P+ +  +  + +L K+E
Sbjct: 477 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDE 515



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 112/213 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G C+   ++    +  +M   G+ P+VV++ TL  G  +   +ER  +LF +M   
Sbjct: 156 IMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGEL 215

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V A+  TYT+ I+G  K G   + +EL+  +++     ++  Y+ +I   C  G+L  A
Sbjct: 216 DVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNA 275

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    +  +VVTY+ +I GL  + ++ +A  L   M+ + ++PN+I++ TLI G
Sbjct: 276 FELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDG 335

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +  I    K   L ++MK     P  +  +I++
Sbjct: 336 YCSIGNLDKASSLFNQMKSSGQSPSLATYNILI 368



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 120/237 (50%), Gaps = 3/237 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN +IE    L+ +M    +  +   +  L  G F++   +   +L+++M+  G
Sbjct: 192 LIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG 251

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   I   C +G +  + ELF  +R      ++  Y+ LI GLC+  R+  A 
Sbjct: 252 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAE 311

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R  L  ++++Y+ +I G  + G +DKA  LF  M+ +  +P++ T+  LI GF
Sbjct: 312 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGF 371

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
                 + V +++ +M+ + + P     +I++D L +++   N   +F ++   E+ 
Sbjct: 372 SEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSD---NIEKAFQIYSSMEKA 425



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K    +  + LY +M   GI P+V  +N++        ++  AF+LFDEM+  
Sbjct: 226 VLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER 285

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA +  TY   I GLC+   ++E+  L   ++      ++ +Y+ LIDG C  G L+ A
Sbjct: 286 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 345

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF+ +        + TY+I+I G           D+  +ME   ++P+ +T+  L+  
Sbjct: 346 SSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDA 405

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +R +   K  ++   M++  ++ D  I  +++
Sbjct: 406 LVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 438



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN + +++  E AL   ++M+ +G+ P     N L I L + +  E+A+++F+E  +  
Sbjct: 88  IINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGN 146

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  ++ I I G C+ GY+ +  E+   +  +    ++  Y+ LIDG CK+G +E   
Sbjct: 147 VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 206

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY---------------------------------- 147
           +LF+ +    +VA+  TY+++I+G +                                  
Sbjct: 207 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRC 266

Query: 148 -NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            NDG+++ A +LF +M E  VA NV+T+ TLI G  +     +   L+ +MK   + P+ 
Sbjct: 267 CNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNL 326

Query: 207 SIVSIVVD 214
              + ++D
Sbjct: 327 ISYNTLID 334



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC    ++ A +L+++M S G  P +  +N L  G  E         +  EM+  G
Sbjct: 332 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    TYTI +D L ++  I ++ +++ ++       DI  Y  LI GLC  G ++ A 
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 451

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL    L  + V Y+ MI+G   +G   +A  L  +M EN + PNV ++ + I   
Sbjct: 452 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXIL 511

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
            +  + ++   LL  M E  + P  SI +++
Sbjct: 512 CKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+ + K   G  ++  EM ++G+ P  V +  L   L     +E+AF+++  M++ 
Sbjct: 366 ILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKA 425

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ AD   Y + I GLC  G + E+ +LF++L  +  + +   Y+ +I G CK G    A
Sbjct: 426 GLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRA 485

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           L L   +    +V +V +Y+  I  L  D +  +A  L  DM E  + P++
Sbjct: 486 LRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSI 536


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 118/257 (45%), Gaps = 36/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ ++ ++  AL ++  M   G  P V   N L +GL E  Q+E+A ++ DEM   G
Sbjct: 554 IIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAG 613

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TYT  + G    G   ++ E F  L+    ELD+  Y  L+   CKSGR++ AL
Sbjct: 614 ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSAL 673

Query: 122 ELF-----HSLPRGVLV------------------------------ADVVTYSIMIHGL 146
            +        +PR   V                               D+ TY+  I+  
Sbjct: 674 AVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINAC 733

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M +A     +ME   V PN+ T+ TLIHG+ R + P K ++   +MK   + PD 
Sbjct: 734 CKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDK 793

Query: 207 SIV-SIVVDLLAKNEIS 222
           ++   ++  LL++  ++
Sbjct: 794 AVYHCLMTSLLSRASVA 810



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 111/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ + K+   A  ++ +++  G+KPDVV++N +      +  ++RA +   EMQ++
Sbjct: 483 MLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKE 542

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                TRT+   I G  ++G +  ++E+F  +R   C   +  ++ LI GL +  ++E A
Sbjct: 543 RHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKA 602

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  +  TY+ ++HG  + G   KA + F  ++   +  +V T+  L+  
Sbjct: 603 VEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKA 662

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       + +  +M  + +  +  + +I++D  A+
Sbjct: 663 CCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWAR 700



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  ++  AL +   M   GIK ++  ++ L  G   +     AF +F+++ +DG
Sbjct: 449 LINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDG 508

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I   C  G +  ++   + ++  +     + +  +I G  +SG +  AL
Sbjct: 509 LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRAL 568

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +     +  V T++ +I GL    QM+KA ++  +M    ++PN  T+ T++HG+
Sbjct: 569 EIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGY 628

Query: 182 IRINEPSKVIELLHKMK 198
             + +  K  E   K+K
Sbjct: 629 ASLGDTGKAFEYFTKLK 645



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 95/203 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  +C+   +  A  L  EM  +GI   + I++T+  G   I   E+   +FD ++  G
Sbjct: 379 IIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECG 438

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   I+   K G + +++E+ + + +   + +++ YS LI+G  +      A 
Sbjct: 439 FTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAF 498

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L  DVV Y+ +I      G MD+A     +M++    P   TF  +IHGF
Sbjct: 499 AVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGF 558

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            R  +  + +E+   M+    +P
Sbjct: 559 ARSGDMRRALEIFDMMRWSGCIP 581



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 91/204 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y   +++E AL+   +M  +GI+  +V ++ L  G  +I   E A   F E +   
Sbjct: 309 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERH 368

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   I   C+   + ++  L R +     +  I  Y  ++DG    G  E  L
Sbjct: 369 TTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCL 428

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L        V++Y  +I+     G++ KA ++   ME   +  N+ T+  LI+GF
Sbjct: 429 IVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGF 488

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +R+ + +    +   + +  + PD
Sbjct: 489 VRLKDWANAFAVFEDVVKDGLKPD 512



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 99/219 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+ K  + E A + + E   +    + +I+  +     +   + +A  L  EM+ +
Sbjct: 343 ILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEE 402

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A    Y   +DG    G   + + +F  L+       + +Y CLI+   K G++  A
Sbjct: 403 GIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKA 462

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   +    +  ++ TYS++I+G         A  +F D+ ++ + P+V+ +  +I  
Sbjct: 463 LEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRA 522

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F  +    + I  + +M+++   P       ++   A++
Sbjct: 523 FCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARS 561



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 101/229 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  Y +  ++  A   +  M ++GI+P   ++ +L         +E A     +M+ +
Sbjct: 273 LMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEE 332

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY+I + G  K      +   F+  +     L+   Y  +I   C++  +  A
Sbjct: 333 GIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQA 392

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    + A +  Y  M+ G    G  +K   +F  ++E    P+VI++G LI+ 
Sbjct: 393 EALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINL 452

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           +I+I + SK +E+   M+   +  +    S++++   + +   N+   F
Sbjct: 453 YIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVF 501



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 2/126 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ +  ++  A  L  +M  +G++PD+  + +      +   ++RA K   EM+  
Sbjct: 693 ILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVV 752

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  + +TYT  I G  +     ++++ F+ ++    + D   Y CL+  L    R  +A
Sbjct: 753 GVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLL--SRASVA 810

Query: 121 LELFHS 126
            E  +S
Sbjct: 811 EEYIYS 816


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 118/223 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  +++ AL  +  ML++G++PD+V +N L  GL ++  ++ A +L +EM   G
Sbjct: 359 LIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASG 418

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+T  IDG CK+G +  ++E+ R +     ELD  A++ LI GLC+ GR+  A 
Sbjct: 419 LKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAG 478

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       D  TY+++I      G +     L  +M+ +   P V+T+  L++G 
Sbjct: 479 RMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGL 538

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
            +  +      LL  M    V P+    +I++D  +K+  S++
Sbjct: 539 CKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVD 581



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 121/222 (54%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G+CK  ++  A  ++ E+  +G++P VV  NTL  G  +   VE  F+L   M+ +
Sbjct: 253 VLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESE 312

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T++  I+GLCK G + E   LF  +       +   ++ LIDG CK G++++A
Sbjct: 313 GVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLA 372

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+ F  +    +  D+VTY+ +I+GL   G + +A  L  +M  + + P+ ITF TLI G
Sbjct: 373 LKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDG 432

Query: 181 FIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAKNEI 221
             +  +    +E+  +M E+ + + D +  +++  L  +  +
Sbjct: 433 CCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRV 474



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ ++E    L   M S+G+ PDV   + L  GL +  +++    LFDEM   G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK G +  +++ F+ +       D+  Y+ LI+GLCK G L+ A 
Sbjct: 349 LVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 408

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    L  D +T++ +I G   DG M+ A ++   M E  +  + + F  LI G 
Sbjct: 409 RLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGL 468

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R         +L  M      PD    ++V+D   K
Sbjct: 469 CREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCK 505



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 102/209 (48%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           EIE +  LY E+L  G  P +   N L  G  +   V  A  +FDE+ + G+     ++ 
Sbjct: 228 EIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFN 287

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             I G CK+G + E   L   +       D+  +S LI+GLCK GRL+    LF  +   
Sbjct: 288 TLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR 347

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            LV + VT++ +I G    G++D A   F  M    V P+++T+  LI+G  ++ +  + 
Sbjct: 348 GLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEA 407

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             L+++M    + PD    + ++D   K+
Sbjct: 408 RRLVNEMTASGLKPDKITFTTLIDGCCKD 436



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 104/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   ++    L+ EM  +G+ P+ V   TL  G  +  +V+ A K F  M   G
Sbjct: 324 LINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQG 383

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I+GLCK G + E+  L   +     + D   ++ LIDG CK G +E AL
Sbjct: 384 VRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESAL 443

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  D V ++ +I GL  +G++  A  +  DM      P+  T+  +I  F
Sbjct: 444 EIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCF 503

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +     +LL +M+    +P     + +++ L K 
Sbjct: 504 CKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 541



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +CK  +++    L  EM S G  P VV +N L  GL +  Q++ A  L D M   
Sbjct: 498 MVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNV 557

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           GVA +  TY I +DG  K+G  V+ V++F + + L    D  +Y+ L++   K+ +
Sbjct: 558 GVAPNDITYNILLDGHSKHGSSVD-VDIFNSEKGL--VTDYASYTALVNESSKTSK 610


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   +  A  ++   L  G  P VVI + L  G  +   V+ A+++F+ M   
Sbjct: 246 VLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNR 305

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +  I I+GLCK   + ++ E+F  +   + + D+  YS  +DGLC++ R++ A
Sbjct: 306 GCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQA 365

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF-LDMEENAVAPNVITFGTLIH 179
            ++   L       DVV Y+ +I GL + G++D+A  +F +DM     APN  T   L++
Sbjct: 366 RQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVN 425

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF       +  EL  +  E+ V PD    S + +  AK E
Sbjct: 426 GFGLAGRLDEARELFQRFVERGVQPDCRTFSAMANNTAKTE 466



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 111/253 (43%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +CK K I+ A+ L+ EM + G  P    +NTL  GL  + ++  A + ++ +   
Sbjct: 106 ILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSS 165

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL-----------------------FRTLRILKC 97
           G  A   TY I +DG CK   + E+VEL                       F+  +I + 
Sbjct: 166 GAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEA 225

Query: 98  ELDIQ------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           EL                ++ LIDGLCK+ R+  A E+F S         VV  S ++ G
Sbjct: 226 ELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDG 285

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G +D+A  +F  M      PN ++   LI+G  +    S+  E+  ++ ++   PD
Sbjct: 286 FCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPD 345

Query: 206 ASIVSIVVDLLAK 218
               S  +D L +
Sbjct: 346 VVTYSTFMDGLCR 358



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I+  CK+  I+ A + + E+       + V +N L     +  +++ A +LF EM+  
Sbjct: 71  ITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKAP 130

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A  T TY   I GLC+   + E+ + +  L           Y+ L+DG CK+ R+  A
Sbjct: 131 GCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPEA 190

Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           +EL + L  RG +V     Y+ +I  L+  G++ +A   F  ME++ V P  +TF  LI 
Sbjct: 191 VELLNELVARGGVVTS-APYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLID 249

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  + N  ++  E+     E    P   I S ++D   K
Sbjct: 250 GLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCK 288


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 116/211 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYC+   ++ AL L+ EM+S G+ P+++ +N +  GLF   +   A +L+  + + G
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    E++ +F+ L +   +L+ + ++ +I  L K GR + A 
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF +L    LV DV TYS+M   L   G +++  DLFL MEEN    N     +++   
Sbjct: 672 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 731

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           ++  + ++    L  + EK+   +AS  S++
Sbjct: 732 LQRGDITRAGTYLSMIDEKHFSLEASTASLL 762



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  L S M S G+KPD V +NTL  G   + +++ A  LF EM   G
Sbjct: 517 LIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ +  TY I + GL        + EL+  +     +L++  Y+ ++ GLCK+   + AL
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F +L    L  +  T++IMI  L   G+ D+A DLF  +  N + P+V T+  +    
Sbjct: 637 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 696

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAKNEIS 222
           I      ++ +L   M+E     ++ ++ SIV  LL + +I+
Sbjct: 697 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDIT 738



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 118/223 (52%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK+  ++ A+  + +M+ +G+ P+++++ +L   L    + ++A +L  EM   G+  +T
Sbjct: 417 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNT 476

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
             +   I   CK G ++ES +LF  +  +  + ++  YS LIDG C +G+++ A +L  S
Sbjct: 477 IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSS 536

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D VTY+ +I+G     +MD A  LF +M  + V+PN+IT+  ++ G      
Sbjct: 537 MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   EL   + +     + S  +I++  L KN ++  +L  F
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 639



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K  + + A + Y EML + I PDVV ++++   L +   +++A ++   M ++G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   + G C +    E++   + +R    E D+  Y+ L+D LCK+GR   A 
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  D+ TY  ++ G    G + + H L   M  N + P+   F  LI  +
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAY 381

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  +  + + +  KM++  + P+      V+ +L K+
Sbjct: 382 AKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKS 419



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C+   ++        ++ KG + + +    L  GL    +   A  +    M  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
                D  + TI + GLC      E++EL   +   R      D+ +Y+ +I+G  K G 
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            + A   +H +    +  DVVTYS +I  L     MDKA ++   M +N V PN +T+ +
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF-TVHERQ 235
           ++HG+    +P + I  L KM+   V PD    + ++D L KN  S  +   F ++ +R 
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 236 EEVD 239
            E D
Sbjct: 332 LEPD 335



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C   + + A  L  EML +GI  + +  N++     +  +V  + KLFD M R G
Sbjct: 447 LIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+  IDG C  G + E+ +L  ++  +  + D   Y+ LI+G C+  R++ AL
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    +  +++TY+I++ GL++  +   A +L++ + ++     + T+  ++HG 
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + N   + + +   +   ++  +    +I++  L K
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 41/251 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GYC +++ + A+    +M S G++PDVV +N+L   L +  +   A K+FD M + G
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 62  VAADTRTYTIFIDGLCKNGYIVE-----------------------------------SV 86
           +  D  TY   + G    G +VE                                   ++
Sbjct: 332 LEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAM 391

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  +R      ++  Y  +I  LCKSG ++ A+  F  +    L  +++ Y+ +IH L
Sbjct: 392 LVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL 451

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIELLHKMKEKNVM 203
               + DKA +L L+M +  +  N I F ++IH      R+ E  K+ +L+ ++    V 
Sbjct: 452 CIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRI---GVK 508

Query: 204 PDASIVSIVVD 214
           P+    S ++D
Sbjct: 509 PNVITYSTLID 519



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 105/215 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +CK   +  +  L+  M+  G+KP+V+ ++TL  G     +++ A KL   M   G
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I+G C+   + +++ LF+ +       +I  Y+ ++ GL  + R   A 
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+  + +     ++ TY+I++HGL  +   D+A  +F ++    +     TF  +I   
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 661

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +++    +  +L   +    ++PD    S++ + L
Sbjct: 662 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 696



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 27/265 (10%)

Query: 2   LINGYCKNKEIEGALNL-YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C +K    A+++    M      PDV     L  GL + ++ + A +L   M  D
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 187

Query: 61  ---GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              G A D  +YT  I+G  K G   ++   +  +   +   D+  YS +I  LCK   +
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAM 247

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A+E+  ++ +  ++ + +TY+ ++HG  +  Q  +A      M  + V P+V+T+ +L
Sbjct: 248 DKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSL 307

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASI----------------VSIVVDLLAKNEI 221
           +    +    ++  ++   M ++ + PD +                 +  ++DL+ +N I
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367

Query: 222 S-----LNSLPSFTVHERQEEVDES 241
                  N L     + +QE+VDE+
Sbjct: 368 HPDHHVFNIL--ICAYAKQEKVDEA 390



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           +  Y  LI   C++GRL++      ++ +     + +T++ ++ GL  D +   A D+ L
Sbjct: 87  VHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVL 146

Query: 161 -DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
             M E +  P+V +   L+ G    N   + +ELLH M +
Sbjct: 147 RRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMAD 186


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 117/228 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+    +++ ALN+   M   G  P V+ +N L  GL + +QVERA  + ++M   G
Sbjct: 555 IIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAG 614

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYTI + G   NG I ++ E F  ++    +LD+  Y  L+   CKSGR++ AL
Sbjct: 615 ITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSAL 674

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    +  +   Y+I+I G    G + +A DL   M+E+ V PN+ T+ + I+  
Sbjct: 675 AVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINAC 734

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +  +  +  +++ +M +  + P+    + ++   AK  +   +L SF
Sbjct: 735 CKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSF 782



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  ++  A+ +  EM S GIK +   ++ L  G   +H    AF +F+EM + G
Sbjct: 450 LINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSG 509

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + I+  CK G +  ++ +   ++  + +   +A+  +I+G   +G ++ AL
Sbjct: 510 LQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRAL 569

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + R      V+TY+ +IHGL    Q+++A  +   M    + PN  T+  ++ G+
Sbjct: 570 NILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGY 629

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +  K  E   K+KE  +  D  I   ++    K+
Sbjct: 630 AANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKS 667



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 109/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+    +   A +++ EML  G++PD  I+N L     ++  ++RA ++ ++MQ++
Sbjct: 484 MLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKE 543

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +    R +   I+G    G +  ++ +   +R   C   +  Y+ LI GL K  ++E A
Sbjct: 544 RMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERA 603

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + + + +    +  +  TY+I++ G   +G + KA + F  ++E  +  +V  + TL+  
Sbjct: 604 VSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRA 663

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +       + +  +M  + +  +  + +I++D  A+ 
Sbjct: 664 CCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARR 702



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 87/178 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ GY  N +I  A   ++++   G+K DV I+ TL     +  +++ A  +  EM   
Sbjct: 624 IIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQ 683

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +A +T  Y I IDG  + G + E+ +L + ++      +I  Y+  I+  CK+G ++ A
Sbjct: 684 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 743

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            ++   +    L  ++ TY+ +I G       D+A   F +M+   + P+   +  L+
Sbjct: 744 QKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLV 801



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 101/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY   ++ +  L ++  +      P ++ +  L     +I +V +A  +  EM+  G
Sbjct: 415 MMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYG 474

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + +TY++ I G         +  +F  +     + D   Y+ LI+  CK G ++ A+
Sbjct: 475 IKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAI 534

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   + +  +      +  +I G    G M +A ++   M  +  AP V+T+  LIHG 
Sbjct: 535 RILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGL 594

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I+ N+  + + +L+KM    + P+    +I++   A N
Sbjct: 595 IKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAAN 632



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 98/213 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I  Y K  +   A   +  M ++GI+P+  +  +L         +       +EM+ +
Sbjct: 274 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAE 333

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY+I I G  K      +  LF+  +    +L+   YS +I   C+SG ++ A
Sbjct: 334 GIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNMDRA 393

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    + A +  Y  M+HG        K   +F  ++E    P++I++G LI+ 
Sbjct: 394 EELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINL 453

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +I+I + +K I +  +M+   +  +    S+++
Sbjct: 454 YIKIGKVTKAIAISKEMESYGIKHNNKTYSMLI 486



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 11/160 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ +  ++  A +L  +M   G+ P++  + +      +   ++RA K+ +EM   
Sbjct: 694 ILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADV 753

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI----------DG 110
           G+  + +TYT  I G  K      +++ F  +++   + D  AY CL+          +G
Sbjct: 754 GLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEG 813

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
              +G L I  E+F +    V +   V +S  +H +   G
Sbjct: 814 STYTGILSICREMFEN-DLTVDMRTAVHWSRWLHKIERTG 852


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 3/241 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ + K    + A+ +   +  +G KP+V  +NT+        Q E A ++++ M  D
Sbjct: 148 ILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLAD 207

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TYT  I    K G I E++ +F+ +    CE ++  YS LI    K+GR ++A
Sbjct: 208 GAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLA 267

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   + R     + VT++ ++      GQ   A D+F  M      P+ +++  LI  
Sbjct: 268 LELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISA 327

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHERQEE 237
           F R N+  + ++ L +M+ +   PD  + ++V++ L ++ +    L +   F    RQ +
Sbjct: 328 FDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGVLSAQLKAAQIFQAATRQGQ 387

Query: 238 V 238
           +
Sbjct: 388 L 388



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 100/212 (47%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
            ++++  AL L +EM   G+  +V  ++ L     + +++E A  ++ ++ R+G   +  
Sbjct: 85  SHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLV 144

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY I ID   K G   E+V++   L     + +++ Y+ ++    +SG+ E AL ++  +
Sbjct: 145 TYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERM 204

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                     TY+ +I      G++++A  +F DM       NVIT+ +LI    +    
Sbjct: 205 LADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRW 264

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              +ELL +M   N  P+    + ++   A+ 
Sbjct: 265 QLALELLDEMHRDNCKPNTVTFNALLSACAQG 296



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 41  LFEIHQV---ERAFKLFDEMQ------RDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           L E+H+V    RA +LFD ++            D  TYT  I     +  + +++EL   
Sbjct: 39  LKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELVAE 98

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM--IHGLYND 149
           +R      ++  YS L++   K+  LE+AL+++  L R     ++VTY+I+  IHG    
Sbjct: 99  MRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHG--KM 156

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G   +A  +   +E+    P V T+ T++    R  +P   + +  +M      P A+  
Sbjct: 157 GNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTY 216

Query: 210 SIVVDLLAKN 219
           + ++    K 
Sbjct: 217 TALISAYGKT 226


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 112/210 (53%), Gaps = 2/210 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I G CK+ +++ A  ++S +L +G  PD   + TL  G      V  AF L DEM + 
Sbjct: 714 IAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKR 773

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A +  TY   I+GLCK+G +  + +LF  L +     ++ +Y+ LIDG CK+G    A
Sbjct: 774 GLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREA 833

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L + + +  +   ++TYS +I+G    G M KA +L  +M E     N+  F  L+ G
Sbjct: 834 LDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEG 893

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            ++  E  K+ + LH M    + P A ++S
Sbjct: 894 HVKCGEVKKIAK-LHNMMHITI-PCAGVIS 921



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C+    E AL+++  ML +G+ PD V + TL   LF++ +  RA  L++++   G
Sbjct: 435 LLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T  +   I+G CK   ++E+ E F  ++ L  E D   Y  LIDG CK G +E A 
Sbjct: 495 YGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAF 554

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  ++  +  Y+ +I GL+   +  +  DL  +M    ++PNV+T+GTLI G+
Sbjct: 555 KVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGW 614

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K       M EK   P+  I S +V  L +
Sbjct: 615 CDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYR 651



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 123/237 (51%), Gaps = 3/237 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  +++ A+ L  EML+ G++ ++ I N L  G  +  QV  A +L   M   
Sbjct: 329 VLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDW 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  ++ +Y+  +DG C+ G + +++ ++  +  +  + ++  ++ L+ GLC+ G  E A
Sbjct: 389 DLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDA 448

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L ++H + +  +  D V+Y  ++  L+  G+  +A  L+ D+       +   F T+I+G
Sbjct: 449 LHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMING 508

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           F ++ +  +  E  ++MKE    PD      ++D   K     N   +F V E+ E+
Sbjct: 509 FCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLG---NVEEAFKVKEKMEK 562



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C+   +  A+++Y+EML  GI+ +VV HN+L  GL  +   E A  ++  M + G
Sbjct: 400 LMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRG 459

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  +Y   +D L K G    ++ L+  +          A++ +I+G CK  ++  A 
Sbjct: 460 VTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAE 519

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F+ +       D VTY  +I G    G +++A  +   ME+ A+ P++  + +LI G 
Sbjct: 520 ETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGL 579

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  +V++LL +M  K + P+
Sbjct: 580 FKSKKTREVMDLLSEMCLKGLSPN 603



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           LI G+C    ++ A   Y +M+ KG  P+V+I + +   L+ + +++ A  L        
Sbjct: 610 LIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLD 669

Query: 54  -------FDEMQR--DG-----VAADTR-------------TYTIFIDGLCKNGYIVESV 86
                  FD + +  DG       ADT               Y I I GLCK+G + ++ 
Sbjct: 670 VFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAK 729

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F +L +     D   Y  LI G   +G +  A  L   + +  L  +++TY+ +I+GL
Sbjct: 730 KIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGL 789

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +D+A  LF  +    +APNVI++  LI G+ +     + ++L +KM ++ + P  
Sbjct: 790 CKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSL 849

Query: 207 SIVSIVV 213
              S ++
Sbjct: 850 ITYSALI 856



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K+K+    ++L SEM  KG+ P+VV + TL  G  +  ++++AF  + +M   G
Sbjct: 575 LIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKG 634

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-------------RILKCE---LDIQ--- 102
            A +    +  +  L + G I E+  L + +             R+ K +   LD Q   
Sbjct: 635 FAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIA 694

Query: 103 ----------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                            Y+  I GLCKSG+++ A ++F SL       D  TY  +IHG 
Sbjct: 695 DTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGY 754

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G ++ A  L  +M +  +APN+IT+  LI+G  +     +  +L  K+  K + P+ 
Sbjct: 755 SAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNV 814

Query: 207 SIVSIVVDLLAKN 219
              +I++D   KN
Sbjct: 815 ISYNILIDGYCKN 827



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 113/254 (44%), Gaps = 36/254 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF--------- 51
           I++N YCK+  +  A++   EM   G + +VV +N+L  G   I  +ERA          
Sbjct: 223 IMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGER 282

Query: 52  --------------------------KLFDEMQR-DGVAADTRTYTIFIDGLCKNGYIVE 84
                                     K+  EM+R +G+  D   Y + IDG C+   + +
Sbjct: 283 GILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDD 342

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           +V L   +  +   +++   + LI+G CK+G++  A  L   +    L  +  +YS ++ 
Sbjct: 343 AVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMD 402

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G   +G + KA  ++ +M    +  NV+T  +L+ G  R+      + + H M ++ V P
Sbjct: 403 GFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTP 462

Query: 205 DASIVSIVVDLLAK 218
           D      ++DLL K
Sbjct: 463 DEVSYCTLLDLLFK 476



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 7/218 (3%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           YC+   I+ AL+++  M   G  P +   N L   L    +   A  ++D + R G+  D
Sbjct: 158 YCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPD 217

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG---RLEIALE 122
             T +I ++  CK+G++  +V+  + +  L  EL++  Y+ LIDG    G   R E+ L+
Sbjct: 218 VFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLK 277

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHGF 181
           L     RG+L  + VT +++I G     ++++A  +  +ME +  +  +   +G LI G+
Sbjct: 278 LMGE--RGIL-RNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGY 334

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R+ +    + L  +M    +  +  I + +++   KN
Sbjct: 335 CRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKN 372



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 109/226 (48%), Gaps = 16/226 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK +++  A   ++ M   G +PD V + TL  G  ++  VE AFK+ ++M+++ 
Sbjct: 505 MINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEA 564

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I GL K+    E ++L   + +     ++  Y  LI G C  GRL+ A 
Sbjct: 565 ILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAF 624

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  +       +V+  S ++  LY  G++D+A+ L   M       N+  F  L HG+
Sbjct: 625 TAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKM------VNLDVF--LDHGY 676

Query: 182 I-RIN-------EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R++       +  K+ + L +  +   +P++ + +I +  L K+
Sbjct: 677 FDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKS 722



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 74/141 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK+  ++ A  L+ ++  KG+ P+V+ +N L  G  +      A  L ++M ++G
Sbjct: 785 LINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEG 844

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++    TY+  I G CK G + ++  L   +R L  + +I  +  L++G  K G ++   
Sbjct: 845 ISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEGHVKCGEVKKIA 904

Query: 122 ELFHSLPRGVLVADVVTYSIM 142
           +L + +   +  A V+++  M
Sbjct: 905 KLHNMMHITIPCAGVISHKQM 925


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 96/169 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NGYCK K I+ A  L+ EM  +G+ PD V +NTL  GL +  +   A +LF +M  +
Sbjct: 376 ILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSN 435

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY+I +D L K GY+ +++ LFR +     + D+  Y+ +IDG+CK G+ + A
Sbjct: 436 GYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDA 495

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
            ELF  L    L  +    +  I G+   G +D+AH  F  ME++  +P
Sbjct: 496 RELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 117/214 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN +C+   ++   ++  +++  G++P+V+  +TL  G     ++ RA +LFD M   
Sbjct: 131 ILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVAR 190

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +Y+I I GLC+ G   E ++L   ++++ CE D+  Y+ ++D LCK   +  A
Sbjct: 191 GYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEA 250

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +    ++  VVTY+ +IHGL N G+  +A  L  +M+   + P+++ F  LI  
Sbjct: 251 VHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDI 310

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  E S+   +L  M E  V PD +  + +++
Sbjct: 311 MCKEGEVSEARVILKTMTEMGVEPDVATYNTLMN 344



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK++ +  A++++ +M   GI P VV + +L  GL  + + + AF L +EM+   
Sbjct: 237 IVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGN 296

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   +++ ID +CK G + E+  + +T+  +  E D+  Y+ L++G C    +  A 
Sbjct: 297 IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEAR 356

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +     + DV ++SI+++G     ++D+A  LF +M    + P+ +++ TLI G 
Sbjct: 357 KVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGL 416

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   P +  EL   M      P+    SI++D L+K 
Sbjct: 417 CQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQ 454



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 4/242 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK  E+  A  +   M   G++PDV  +NTL  G     +V  A K+F+ M   
Sbjct: 306 VLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISK 365

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +++I ++G CK   I E+ +LF  +       D  +Y+ LI GLC++ R   A
Sbjct: 366 GRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEA 425

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +       ++VTYSI++  L   G +D+A  LF  ME + + P+++T+  +I G
Sbjct: 426 EELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDG 485

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
             +  +     EL  ++  K + P+  + +  +D + K  +   +  +F    RQ E D+
Sbjct: 486 MCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAF----RQMEKDD 541

Query: 241 SN 242
            +
Sbjct: 542 CS 543



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C   +I  A+ L+  M+++G KP+V  ++ +  GL  + +     KL + M+  G
Sbjct: 167 LINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVG 226

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y   +D LCK+  + E+V +F  ++       +  Y+ LI GL   GR + A 
Sbjct: 227 CEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAF 286

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +  G ++ D+V +S++I  +  +G++ +A  +   M E  V P+V T+ TL++G+
Sbjct: 287 GLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGY 346

Query: 182 ---IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + + E  KV E+   M  K  MPD    SI+V+   K
Sbjct: 347 CLRMEVVEARKVFEV---MISKGRMPDVFSFSILVNGYCK 383



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +   + K  +  ++L  +M   GI  DV+    L      +  V+  F +  ++ + G
Sbjct: 97  LFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLG 156

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T++  I+G C  G I  ++ELF  +     + ++ +YS +I GLC+ G+    +
Sbjct: 157 LEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVI 216

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       DVV Y+ ++  L  D  +++A  +F  M+   + P V+T+ +LIHG 
Sbjct: 217 KLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL 276

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    +   LL++MK  N+MPD    S+++D++ K
Sbjct: 277 RNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCK 313



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 37/213 (17%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           + I  AL+ ++ M++    P +V    LF  L  +   +    L  +M+  G++ D  + 
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EIALELFHSLP 128
           TI I+  C+                  C +D         G    G++ ++ LE      
Sbjct: 130 TILINCFCR-----------------LCHVDY--------GFSVLGKIIKLGLE------ 158

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                 +V+T+S +I+G   +G++ +A +LF  M      PNV ++  +I G  R+ + +
Sbjct: 159 -----PNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTT 213

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +VI+LL  MK     PD  I + +VD L K+ +
Sbjct: 214 EVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRL 246


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+ +   ++ AL L+  + S G KP+   + T+  GL++  ++E A   FDE    
Sbjct: 304 ILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE---- 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D  +YT  I GL  +  I E+ ELF  L+   C  ++ AY+ +IDGL K+GR+E  
Sbjct: 360 --ALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDG 417

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+ F  +     V    TY+++I GL     +  A  +F  M +    P+ IT+ TLI G
Sbjct: 418 LKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 477

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F + ++  +  +LL  M  K   P A     +V    K
Sbjct: 478 FSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCK 515



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 100/181 (55%), Gaps = 1/181 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           L++GY K + ++ A  +Y  M++ GIKP+ V  N L  GLF+  + +RAF LF EM ++D
Sbjct: 649 LMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKD 708

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     +YTI IDGL K G + E+   F+ +       +   Y+ LI  L K+GR+  A
Sbjct: 709 EVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEA 768

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + +  +  DV  YS +I GL +   +D A D+F +M +   APN +T+  L  G
Sbjct: 769 KKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRG 828

Query: 181 F 181
           F
Sbjct: 829 F 829



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 3/205 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++NG CK ++I+ A+ L+ EM S G +P +V +NT+  GL  I +++ A+K F+ M  +
Sbjct: 25  IVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDN 84

Query: 61  GVAADTRTYTIFIDGLCKNGYI-VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G   D   +T  I G CK G   V  + L + L+  +   D+  Y+ +I G CK+G L+ 
Sbjct: 85  GCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFR--PDVFLYTSVIHGYCKAGDLDT 142

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
             ++   +     + D   Y ++I  L   G++D+A++LF  M ++    + +TF TLI 
Sbjct: 143 GFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIE 202

Query: 180 GFIRINEPSKVIELLHKMKEKNVMP 204
                 +  +  EL  +M E+   P
Sbjct: 203 ALSNHGKLDEACELYREMIERGYEP 227



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 107/220 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK + +  A  ++ +M+ KG  PD + + TL  G  +  +++ A KL D M   
Sbjct: 438 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 497

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   + G CK   I E+ E+   +R   CE  +  ++ L+      GR E A
Sbjct: 498 GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEA 557

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       DV+ Y+ +I  L++ G++ +A  +F  M E   AP+ +T+GT+I  
Sbjct: 558 YQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQN 617

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F +I       E+L  M +  V PD    + ++D   K E
Sbjct: 618 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 657



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ Y      E A  + +EM ++G  PDV+++ +L   LF   +V  A  +FD M   G
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D  TY   I    K G +  + E+   +       D  AY+ L+DG  K  R++ A 
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHG 180
            ++  +    +  + VT+++++HGL+ DG+ D+A  LF +M E++ V P ++++  LI G
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +    S+      +M ++ ++P+    + ++  LAK
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAK 761



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 109/215 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  +++    +  EML+ G  PD   +  L   L ++ +V+ A++LF+ M++ G
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG 189

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I+ L  +G + E+ EL+R +     E  ++    LI  LCK+G+++ A 
Sbjct: 190 CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEAN 249

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E++ ++    +    V Y+ ++ G    G++D    L L M E    P++ T+  L+ GF
Sbjct: 250 EIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGF 309

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            R N     +EL   +      P+A+  + ++  L
Sbjct: 310 SRANRLDDALELFKLLSSYGCKPNAATYTTIIQGL 344



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+CK   I  A  + ++M  +G +P + I  +L        + E A+++  EM   G
Sbjct: 509 IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG 568

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A D   YT  ID L   G + E+  +F ++    C  D   Y  +I    K G +E A 
Sbjct: 569 CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAG 628

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  +  D   Y+ ++ G     ++D+A  ++  M  + + PN +TF  L+HG 
Sbjct: 629 EILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGL 688

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASI-VSIVVDLLAK 218
            +  +  +   L  +M EK+ +P   +  +I++D L K
Sbjct: 689 FKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGK 726



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 6/217 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK   ++  L L  +M+     PD+  +N L  G    ++++ A +LF  +   G
Sbjct: 270 LMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYG 329

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  I GL     + E+   F         LD+ +Y+ +I GL  S R++ A 
Sbjct: 330 CKPNAATYTTIIQGLYDAQRMEEAKAFFDE------ALDVISYTTVIKGLADSKRIDEAC 383

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  L       +VV Y+ +I GL   G+++     F DM  ++  P   T+  +I G 
Sbjct: 384 ELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGL 443

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        ++  +M +K  +PD    + ++D  +K
Sbjct: 444 CKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 480



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK  +++ A  +Y  +++K +    V +N+L  G  ++ +V+   KL  +M    
Sbjct: 235 LIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECD 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D +TY I + G  +   + +++ELF+ L    C+ +   Y+ +I GL  + R+E A 
Sbjct: 295 NFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAK 354

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F          DV++Y+ +I GL +  ++D+A +LF  ++    +PNV+ +  +I G 
Sbjct: 355 AFFDE------ALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGL 408

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           ++       ++    M   + +P  +  ++V+D L K ++  ++   F
Sbjct: 409 LKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVF 456



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  + K   +E A  +   M   G+ PD   +N+L  G  ++ +V++AF ++D M   G
Sbjct: 614 IIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASG 673

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD--IQAYSCLIDGLCKSGRLEI 119
           +  +  T+ + + GL K+G    +  LF+ + + K E+   + +Y+ LIDGL K+GR+  
Sbjct: 674 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM-LEKDEVPPTLVSYTILIDGLGKAGRVSE 732

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A   F  +    ++ +  TY+ +I+ L   G++ +A  L  DM +  V P+V  +  LI 
Sbjct: 733 AFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALIT 792

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G I  +      ++  +M ++   P+
Sbjct: 793 GLIDSSMVDTAWDVFQEMMKRGCAPN 818



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 3/207 (1%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E AL+   EM + G+ PDVV  N +  GL +  ++++A +LF EM   G      +Y  
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA-LELFHSLPRG 130
            I GL     + E+ + F ++    CE D+ A++ LI G CK+G+ ++  + L  +L R 
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR- 119

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               DV  Y+ +IHG    G +D    +  +M      P+   +  LI    ++    + 
Sbjct: 120 -FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEA 178

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLA 217
            EL  +M++   + D      +++ L+
Sbjct: 179 YELFERMRKSGCLGDYVTFMTLIEALS 205


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 8/241 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+ K  ++E A   + EM+  G+ P+ V + TL  G  +  +V+ A  L + M+  G
Sbjct: 526 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMG 585

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  +Y   I+GL K     E+ ++   +       ++  Y+ LIDGLC++GR + A 
Sbjct: 586 CNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAF 645

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH + +   + ++ TYS +I+GL  +G+ D+A  L  +ME   +AP+ +TF +LI GF
Sbjct: 646 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 705

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL--------NSLPSFTVHE 233
           + +        LL +M +    P+    S+++  L K  + L         ++ SF+ HE
Sbjct: 706 VVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHE 765

Query: 234 R 234
           +
Sbjct: 766 K 766



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY     +  A  L   M   G +PD   +N L  G  +  ++E A   F EM   G
Sbjct: 491 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 550

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  +YT  IDG  K+G +  ++ L   +  + C  ++++Y+ +I+GL K  R   A 
Sbjct: 551 LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAE 610

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    L+ +V+TY+ +I GL  +G+   A  +F DME+    PN+ T+ +LI+G 
Sbjct: 611 KICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  +  +   LL +M+ K + PD    + ++D
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLID 703



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+N+ ++ A  ++  M+ +G  P+ V ++TL  GL    +V+ A  + +EM   G
Sbjct: 281 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 340

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYT+ I  LC   +  E++EL   ++   C  ++Q Y+ LI GL + G+LE+A+
Sbjct: 341 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI 400

Query: 122 ELFHSLPRGVLVADVVTYSIMI---------------------HG------LYND----- 149
            L+H + +  LV + VTY+ +I                     HG       YN+     
Sbjct: 401 GLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 460

Query: 150 ---GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G ++KA  LF  M +    P V+T+ TLI+G++     +    LL  MKE    PD 
Sbjct: 461 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 520

Query: 207 SIVSIVVDLLAK 218
              + +V   +K
Sbjct: 521 WTYNELVSGFSK 532



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 120/253 (47%), Gaps = 35/253 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  +  ++E A+ LY +ML +G+ P+ V +N L   L    +   A K+F  M+  G
Sbjct: 386 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 445

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-------------------------------- 89
             A+T+TY   I GLC  G I +++ LF                                
Sbjct: 446 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 505

Query: 90  RTLRILK---CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           R L ++K   CE D   Y+ L+ G  K G+LE A   F  +    L  + V+Y+ +I G 
Sbjct: 506 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGH 565

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             DG++D A  L   MEE    PNV ++  +I+G  + N  S+  ++  KM E+ ++P+ 
Sbjct: 566 SKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNV 625

Query: 207 SIVSIVVDLLAKN 219
              + ++D L +N
Sbjct: 626 ITYTTLIDGLCRN 638



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 108/206 (52%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +EGA NLY +ML+ GI+P ++  NTL   L +  +V  A  +  ++ +  ++ D  TYT 
Sbjct: 221 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTS 280

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I G C+N  +  +  +F  +    C+ +   YS LI+GLC  GR++ AL++   +    
Sbjct: 281 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 340

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +   V TY++ I  L      ++A +L   M++    PNV T+  LI G  R+ +    I
Sbjct: 341 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI 400

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLA 217
            L HKM ++ ++P+    + +++ L 
Sbjct: 401 GLYHKMLKEGLVPNTVTYNALINELC 426



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 44/275 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI---------------------------------- 27
           LING C    ++ AL++  EM+ KGI                                  
Sbjct: 316 LINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRG 375

Query: 28  -KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
            +P+V  +  L  GL  + ++E A  L+ +M ++G+  +T TY   I+ LC  G    ++
Sbjct: 376 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTAL 435

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           ++F  +       + Q Y+ +I GLC  G +E A+ LF  + +   +  VVTY+ +I+G 
Sbjct: 436 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 495

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G ++ A  L   M+EN   P+  T+  L+ GF +  +         +M E  + P+ 
Sbjct: 496 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 555

Query: 207 SIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
              + ++D  +K+   +I+L+ L      ER EE+
Sbjct: 556 VSYTTLIDGHSKDGKVDIALSLL------ERMEEM 584



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKE-IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL+   C+N+E I    +  +E+   G    +   NTL I L +   VE A  L+ +M  
Sbjct: 174 ILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLN 233

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+     T+   I+ L K G + E+  +   +       D+  Y+ LI G C++  L++
Sbjct: 234 SGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDL 293

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +F  + +     + VTYS +I+GL N+G++D+A D+  +M E  + P V T+   I 
Sbjct: 294 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 353

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               I    + IEL+ +MK++   P+    + ++  L++
Sbjct: 354 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSR 392



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 59/285 (20%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+  + + A  L  EM  KG+ PD V   +L  G   + +++ AF L   M   G
Sbjct: 666 LIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVG 725

Query: 62  VAADTRTYTIFIDGLCKNGYIVES------------------------VELFRTLRILKC 97
              + RTY++ + GL K   ++E                           L   +  + C
Sbjct: 726 CKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGC 785

Query: 98  ELDIQAYSCLIDGLCKSGR---------------------------------LEI--ALE 122
           E  +  YS L+ GLC+ GR                                 LE+  AL+
Sbjct: 786 EPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALK 845

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +FHS+        +  Y  +I  L   GQ+++A  LF +M E     + I +  L+ G +
Sbjct: 846 IFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLL 905

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
           +  E    ++LLH M+ KN  P+     I+   L++   S+ S P
Sbjct: 906 KEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEP 950



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           NL + M   G +P +  ++TL  GL    +   A +L  +M+  G   D   Y   +   
Sbjct: 775 NLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAH 834

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           CKN  +  ++++F ++     +L +  Y  LI  LCK+G++E A  LF ++      AD 
Sbjct: 835 CKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADE 894

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           + +++++ GL  +G++D    L   ME     PN+ T+  L     RI +  +   L  K
Sbjct: 895 IVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADK 954

Query: 197 MK 198
           +K
Sbjct: 955 LK 956



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK  ++E A  L+  ML K    D ++   L  GL +  +++   KL   M+   
Sbjct: 865 LICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKN 924

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96
              + +TY I    L + G  +ES  L   L++LK
Sbjct: 925 FTPNIQTYVILGRELSRIGKSIESEPLADKLKVLK 959


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 112/199 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+  +++ AL ++++M  +G +P+ V ++TL  GL +  +V  AF L  EM   G
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T T  I  LC  G   ++  LF  ++   CE ++  Y+ LI GLC SG L++A+
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH + R  +  + VTY+ +I+ L  + ++  A  +   M  N  +PN++T+  +I G+
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGY 435

Query: 182 IRINEPSKVIELLHKMKEK 200
             + +P K + +++ M ++
Sbjct: 436 CILGDPKKAMLVMNNMLQR 454



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 36/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYC +     AL +   M   G KPD   +  L  G  +I ++E AF LF+EM  DG
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY----------------- 104
           +  +  TYT  IDG CK+  +  +  L   ++   C  ++Q Y                 
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 105 ------------------SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                             + +IDGLCK+G   +ALE+F+ +     + +++TYS +I  L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++++A +LF ++E + + P+ IT+  +I  +I   +       L +M +    P  
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTL 705

Query: 207 SIVSIVVDLLAKNE 220
               +++  L KNE
Sbjct: 706 WTYGVLIKGL-KNE 718



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN   +N+ I+ A  + + M   G  P++V +N +  G   +   ++A  + + M + G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +A+  TY   I G C +G    ++ +   +R   C+ D  +Y+ LI G CK  ++E A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    L  + VTY+ +I G   D ++D A  L   M+ +   PNV T+  LIHG 
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N  S   EL   M E+ + P+    + ++D L KN
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKN 613



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYC   + + A+ + + ML +G   ++V +NT+  G  +      A ++ D M+  G
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +YT  I G CK   +  +  LF  +       +   Y+ LIDG CK  +L+ A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R     +V TY+++IHGL        A +L   M E  + PNV+T+  +I G 
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  +E+ +KM E+  +P+    S ++  L +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           ++ Y  MLS+G++P+++I+N +   L +   V  A  +  ++    ++ DT TYT  I G
Sbjct: 200 MDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
            C+   +  ++++F  +    CE +   YS LI+GLC SGR+  A +L   +    ++  
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
             T +  I  L + G  + A  LF+DM+     PNV T+  LI G          I L H
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNE 220
           +M    V P+    + ++++L +N 
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENR 404



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 1/230 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C     E A  L+ +M +KG +P+V  +  L  GL     ++ A  LF  M RDGV  +T
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT 390

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY   I+ L +N  I  +  +   +    C  +I  Y+ +I G C  G  + A+ + ++
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +    A++VTY+ +I G  + G    A  +   M +    P+  ++  LI GF +I++
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
                 L ++M +  + P+    + ++D   K+E  L++  S   H ++ 
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE-KLDTATSLLEHMKRS 559



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           + R     D + + G+      Y+  +  L + G     ++ +  +     + ++  Y+ 
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +I+ LCK G +  A  +   +    +  D  TY+ MI G      +D A  +F  M +  
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             PN +T+ TLI+G       ++  +L+ +M    ++P A
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L   M+S+G+ PD   +N+L   L  +  V+ A  +F  M   G       Y   I  LC
Sbjct: 786 LLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 845

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
           +     E+   F  + +     D    + LIDGL + G  ++ +E  H
Sbjct: 846 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLH 893


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 102/180 (56%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L++G  K+ +IE A +L+ EML  G KP+  I+N L  G       E+  +LF  M   G
Sbjct: 887  LLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQG 946

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YT+ I  LC  G + +S+  FR L  L  E D+  Y+ LI GL +SGRLE A+
Sbjct: 947  INPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAV 1006

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             LF+ + +  +  ++ TY+ +I  L  +G+  +A  ++ ++ +N   PNV T+  LI G+
Sbjct: 1007 SLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGY 1066



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 102/177 (57%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G  K+K +  A++LY +++S+G  P    +  L  GL +  ++E A  LFDEM   G
Sbjct: 852  IISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYG 911

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +   Y I ++G    G   +  ELF+ +       DI++Y+ LI  LC +GRL  +L
Sbjct: 912  CKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSL 971

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
              F  L    L  D++TY+++IHGL   G++++A  LF DME++ +APN+ T+ +LI
Sbjct: 972  SYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLI 1028



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 113/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + IN Y K+ E   A+  Y  M SKGI PDVV  N +   L +  ++  A ++F E++  
Sbjct: 431 LFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSI 490

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TYT+ I    K     E++++F  +   +C  D+ A + LID L K+GR   A
Sbjct: 491 GVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEA 550

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++FH L    L     TY+ ++ GL  +G++ +   L  +M  N+  PN+IT+ T++  
Sbjct: 551 WKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDC 610

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  E +  + +L+ M  K  MPD S  +  +  L K +
Sbjct: 611 LCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKED 650



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 106/203 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  C+   ++ A +++ +M  KGI+P    +N+L  G  +  ++  A +LF+ M   G
Sbjct: 362 VVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY +FI+   K+G  +++++ +  ++      D+ A + ++  L KSGRL +A 
Sbjct: 422 PTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAK 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH L    +  D +TY++MI         D+A  +F +M E    P+V+   +LI   
Sbjct: 482 RVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTL 541

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +    ++  ++ H++KE N+ P
Sbjct: 542 YKAGRGNEAWKIFHELKEMNLDP 564



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 110/218 (50%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++++   K+  IE  L +  EM  KG +   V +NT+  GL +   +  A  L+ ++  +
Sbjct: 816  LILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSE 875

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G +    TY   +DGL K+G I ++ +LF  +    C+ +   Y+ L++G   +G  E  
Sbjct: 876  GFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKV 935

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ELF ++    +  D+ +Y+++I  L   G+++ +   F  + E  + P++IT+  LIHG
Sbjct: 936  CELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHG 995

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              R     + + L + M++  + P+    + ++  L K
Sbjct: 996  LGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGK 1033



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 104/215 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK+K+   A  L  +  S G+      +N L  GL + + ++ A  LF EM+R G
Sbjct: 747 LIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLG 806

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + +D + K+  I + +++ + +     E     Y+ +I GL KS  L  A+
Sbjct: 807 CDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAM 866

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ L          TY  ++ GL  DG+++ A DLF +M +    PN   +  L++G+
Sbjct: 867 DLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGY 926

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
                  KV EL   M ++ + PD    ++++  L
Sbjct: 927 RLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGAL 961



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 109/220 (49%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           +++E  + L  EM   G+KP+V  +      L +  + E A+K+  +M+ +G   D  T 
Sbjct: 230 RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTN 289

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           T+ I  LC  G + ++ ++F  ++    + D   Y  L+D    +G     +E+++++  
Sbjct: 290 TVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKA 349

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                +VV Y+ ++  L   G++D+A D+F  M++  + P   ++ +LI GF++ +  + 
Sbjct: 350 DGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNH 409

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +EL + M      P+     + ++   K+  SL ++  +
Sbjct: 410 ALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRY 449



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
             E A  +  +M  +G KPDVV +  L   L +  +V  A  +F +M+      D  TY 
Sbjct: 266 RFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYI 325

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             +D    NG     +E++  ++      ++ AY+ ++D LC+ GR++ A ++F  + + 
Sbjct: 326 TLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQK 385

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +     +Y+ +I G     +++ A +LF  M  +   PN  T+   I+ + +  E  K 
Sbjct: 386 GIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKA 445

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I+    MK K ++PD    + V+  LAK+
Sbjct: 446 IKRYELMKSKGIVPDVVAGNAVLYSLAKS 474



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I    K    + A+ ++SEM+     PDV+  N+L   L++  +   A+K+F E++  
Sbjct: 501 MMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEM 560

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY   + GL + G + E + L   +       ++  Y+ ++D LCK+G +  A
Sbjct: 561 NLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYA 620

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L + +++     + D+ +Y+  +HGL  + ++ +A  +F  M++  +AP+  T  T++  
Sbjct: 621 LGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKK-VLAPDYTTLCTILPS 679

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
           F++      + E LH +KE  + P +
Sbjct: 680 FVK---NGLMNEALHTLKEYILQPGS 702



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 111/253 (43%), Gaps = 35/253 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C    +  A +++ +M +   KPD V + TL     +        ++++ M+ D
Sbjct: 291 VLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKAD 350

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   YT  +D LC+ G + E+ ++F  ++    E    +Y+ LI G  K+ RL  A
Sbjct: 351 GYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHA 410

Query: 121 LELFHSL------PRGV-----------------------------LVADVVTYSIMIHG 145
           LELF+ +      P G                              +V DVV  + +++ 
Sbjct: 411 LELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYS 470

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G++  A  +F +++   V P+ IT+  +I    + +   + +++  +M E   +PD
Sbjct: 471 LAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPD 530

Query: 206 ASIVSIVVDLLAK 218
              V+ ++D L K
Sbjct: 531 VLAVNSLIDTLYK 543



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G      I+ A  L+SEM   G  PD   +N +   + +  ++E   K+  EM   G
Sbjct: 782 LICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKG 841

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             +   TY   I GL K+  + E+++L+  L           Y  L+DGL K G++E A 
Sbjct: 842 YESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAE 901

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       +   Y+I+++G    G  +K  +LF +M +  + P++ ++  LI   
Sbjct: 902 DLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGAL 961

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                 +  +    ++ E  + PD    ++++  L ++
Sbjct: 962 CTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRS 999



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 3/198 (1%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M   GI  +   +N L   L +      A +++  M  DG+    RTY++ +    K   
Sbjct: 173 MKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRD- 231

Query: 82  IVES-VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
            VE+ V L R +     + ++ +Y+  I  L ++GR E A ++   +       DVVT +
Sbjct: 232 -VETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNT 290

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           ++I  L + G++  A D+F  M+ +   P+ +T+ TL+       +   VIE+ + MK  
Sbjct: 291 VLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKAD 350

Query: 201 NVMPDASIVSIVVDLLAK 218
               +    + VVD L +
Sbjct: 351 GYNDNVVAYTAVVDALCQ 368



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 70/283 (24%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-------- 58
           CKN E+  AL +   M  KG  PD+  +NT   GL +  ++  AF++F +M+        
Sbjct: 612 CKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLAPDYT 671

Query: 59  ---------------------------RDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
                                      + G  AD  ++   ++G+ K   + +S+E    
Sbjct: 672 TLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAEN 731

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           + + +  LD    S LI  LCKS +   A EL        +     +Y+ +I GL ++  
Sbjct: 732 IALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENL 791

Query: 152 MDKAHDLFLDMEENAVAPN-----------------------------------VITFGT 176
           +D A  LF +M+     P+                                    +T+ T
Sbjct: 792 IDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNT 851

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +I G ++     + ++L +K+  +   P       ++D L K+
Sbjct: 852 IISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKD 894



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 78/170 (45%), Gaps = 2/170 (1%)

Query: 50  AFKLFDEM-QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           A +LF  + Q+  +   T +    ++ +  +G + +  ++F  ++    + ++  +  + 
Sbjct: 95  ALQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIF 154

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
             L   G L  A      +    +V +  TY+ +I+ L   G   +A +++  M  + + 
Sbjct: 155 RSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIV 214

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           P+V T+  L+  F +  +   V+ LL +M++  V P+    +I + +L +
Sbjct: 215 PSVRTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQ 263


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 112/199 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+  +++ AL ++++M  +G +P+ V ++TL  GL +  +V  AF L  EM   G
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T T  I  LC  G   ++  LF  ++   CE ++  Y+ LI GLC SG L++A+
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH + R  +  + VTY+ +I+ L  + ++  A  +   M  N  +PN++T+  +I G+
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGY 435

Query: 182 IRINEPSKVIELLHKMKEK 200
             + +P K + +++ M ++
Sbjct: 436 CILGDPKKAMLVMNNMLQR 454



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 36/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYC +     AL +   M   G KPD   +  L  G  +I ++E AF LF+EM  DG
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY----------------- 104
           +  +  TYT  IDG CK+  +  +  L   ++   C  ++Q Y                 
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 105 ------------------SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                             + +IDGLCK+G   +ALE+F+ +     + +++TYS +I  L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++++A +LF ++E + + P+ IT+  +I  +I   +       L +M +    P  
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTL 705

Query: 207 SIVSIVVDLLAKNE 220
               +++  L KNE
Sbjct: 706 WTYGVLIKGL-KNE 718



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN   +N+ I+ A  + + M   G  P++V +N +  G   +   ++A  + + M + G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +A+  TY   I G C +G    ++ +   +R   C+ D  +Y+ LI G CK  ++E A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    L  + VTY+ +I G   D ++D A  L   M+ +   PNV T+  LIHG 
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N  S   EL   M E+ + P+    + ++D L KN
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKN 613



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYC   + + A+ + + ML +G   ++V +NT+  G  +      A ++ D M+  G
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +YT  I G CK   +  +  LF  +       +   Y+ LIDG CK  +L+ A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R     +V TY+++IHGL        A +L   M E  + PNV+T+  +I G 
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  +E+ +KM E+  +P+    S ++  L +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           ++ Y  MLS+G++P+++I+N +   L +   V  A  +  ++    ++ DT TYT  I G
Sbjct: 200 MDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
            C+   +  ++++F  +    CE +   YS LI+GLC SGR+  A +L   +    ++  
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
             T +  I  L + G  + A  LF+DM+     PNV T+  LI G          I L H
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNE 220
           +M    V P+    + ++++L +N 
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENR 404



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 1/224 (0%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E A  L+ +M +KG +P+V  +  L  GL     ++ A  LF  M RDGV  +T TY   
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+ L +N  I  +  +   +    C  +I  Y+ +I G C  G  + A+ + +++ +   
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
            A++VTY+ +I G  + G    A  +   M +    P+  ++  LI GF +I++      
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
           L ++M +  + P+    + ++D   K+E  L++  S   H ++ 
Sbjct: 517 LFNEMVDDGLCPNEVTYTALIDGYCKDE-KLDTATSLLEHMKRS 559



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           + R     D + + G+      Y+  +  L + G     ++ +  +     + ++  Y+ 
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +I+ LCK G +  A  +   +    +  D  TY+ MI G      +D A  +F  M +  
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             PN +T+ TLI+G       ++  +L+ +M    ++P A
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L   M+S+G+ PD   +N+L   L  +  V+ A  +F  M   G       Y   I  LC
Sbjct: 786 LLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 845

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
           +     E+   F  + +     D    + LIDGL + G  ++ +E  H
Sbjct: 846 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLH 893


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + K  + +G    + +M+  G KP V  +N +   + +   VE A  LF+EM+  G
Sbjct: 66  LLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 125

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   IDG  K G + ++V  F  ++ + CE D+  Y+ LI+  CK G+L   L
Sbjct: 126 LIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGL 185

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F  + R  L  +VV+YS ++     +G M +A   ++DM    + PN  T+ +LI  +
Sbjct: 186 EFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAY 245

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +I   S    L ++M +  V  +    + ++D L   E
Sbjct: 246 CKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWE 284



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 118/229 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK  ++E A  L+ EM  +G+ PD V +N++  G  ++ +++     F+EM+  
Sbjct: 100 IMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 159

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   I+  CK G + + +E FR ++    + ++ +YS L+D  CK G ++ A
Sbjct: 160 CCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQA 219

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++ +  + R  LV +  TY+ +I      G +  A  L  +M +  V  NV+T+  LI G
Sbjct: 220 IKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDG 279

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
                 P++ + LL +M E ++        +++D L KN++   ++  F
Sbjct: 280 LCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYF 328



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ YCK   +  A  L +EML  G++ +VV +  L  GL           L DEM    
Sbjct: 241 LIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELD 300

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     T+ + IDGLCKN  + ++++ F R       + +   Y+ +IDGLCK  ++E A
Sbjct: 301 IKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAA 360

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + +  LV D   Y+ ++ G +  G + +A  L   M E  +  +++ + +L+ G
Sbjct: 361 TTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWG 420

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
               N+  K    L +M  + + PD
Sbjct: 421 LSHCNQLQKARSFLEEMIGEGIHPD 445



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A+  +S+M    + P     N L     ++ + +   + F +M   G      TY I
Sbjct: 41  VEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNI 100

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            ID +CK G +  +  LF  ++      D   Y+ +IDG  K GRL+  +  F  +    
Sbjct: 101 MIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 160

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+     G++ K  + F +M+ N + PNV+++ TL+  F +     + I
Sbjct: 161 CEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAI 220

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    M+   ++P+    + ++D   K
Sbjct: 221 KFYVDMRRVGLVPNEYTYTSLIDAYCK 247



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P   + + LF  L ++  VE A + F +M+R  V   TR+    +    K G        
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F+ +     +  +  Y+ +ID +CK G +E A  LF  +    L+ D VTY+ MI G   
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGK 142

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++D     F +M++    P+VIT+  LI+ F +  +  K +E   +MK   + P+   
Sbjct: 143 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVS 202

Query: 209 VSIVVDLLAK 218
            S +VD   K
Sbjct: 203 YSTLVDAFCK 212



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 1/172 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           LI+G C  +     L+L  EM+   IK  VV    L  GL +   V +A   F  +  D 
Sbjct: 276 LIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDF 335

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+   YT  IDGLCK   +  +  LF  +       D  AY+ L+DG  K G +  A
Sbjct: 336 GLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEA 395

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           L L   +    +  D++ Y+ ++ GL +  Q+ KA     +M    + P+ +
Sbjct: 396 LALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 447



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 78/144 (54%), Gaps = 2/144 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI+G CKNK +  A++ +  + +  G++ +  I+  +  GL + +QVE A  LF++M +
Sbjct: 310 VLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQ 369

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT  +DG  K G ++E++ L   +     +LD+ AY+ L+ GL    +L+ 
Sbjct: 370 KGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQK 429

Query: 120 ALELFHSL-PRGVLVADVVTYSIM 142
           A      +   G+   +V+  S++
Sbjct: 430 ARSFLEEMIGEGIHPDEVLCISVL 453


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 105/199 (52%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y +ML  G  PDV+ +N +    F + + +R ++L DEM +DG + D  TY I +  L 
Sbjct: 321 VYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLA 380

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
                + ++ L   +R +  E  +  ++ LIDGL ++G+LE          +     DVV
Sbjct: 381 TGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVV 440

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y++MI G  + G+++KA ++F +M E    PNV T+ ++I GF    +  +   LL +M
Sbjct: 441 CYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEM 500

Query: 198 KEKNVMPDASIVSIVVDLL 216
           + +   P+  + S +V+ L
Sbjct: 501 ESRGCNPNFVVYSTLVNNL 519



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%)

Query: 14  GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
            ALNL + M   G++P V+   TL  GL    ++E      DE  + G   D   YT+ I
Sbjct: 387 AALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMI 446

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
            G    G + ++ E+F+ +       ++  Y+ +I G C +G+ + A  L   +      
Sbjct: 447 TGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCN 506

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
            + V YS +++ L N G++ +AH++  DM E  
Sbjct: 507 PNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 539



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 79/167 (47%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           +L DEM +DG      T+ + I    + G   + VE F   +         +Y+ ++  L
Sbjct: 250 RLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSL 309

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
               + ++   ++  +       DV+TY+I++   +  G+ D+ + L  +M ++  +P++
Sbjct: 310 LGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDL 369

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+  L+H     N+P   + LL+ M+E  V P     + ++D L++
Sbjct: 370 YTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSR 416



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  +  ++E       E +  G  PDVV +  +  G     ++E+A ++F EM   G
Sbjct: 410 LIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I G C  G   E+  L + +    C  +   YS L++ L  +G++  A 
Sbjct: 470 QLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAH 529

Query: 122 EL 123
           E+
Sbjct: 530 EV 531



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I GY    E+E A  ++ EM  KG  P+V  +N++  G     + + A  L  EM+  
Sbjct: 444 VMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESR 503

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G   +   Y+  ++ L   G ++E+ E+ + +
Sbjct: 504 GCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDM 535


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   I  A N++ +M    + P V ++N+L  G F     + A   F E+ R  
Sbjct: 284 LIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKE 343

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T +I + GLC  G +  +      ++     L+  AY+ LID  CKSG L+ AL
Sbjct: 344 LRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEAL 403

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  +VVTYS +I G   +G+M+ A  ++ +M    V PNV+T+  LIHG 
Sbjct: 404 VTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGH 463

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +      L  +M+EK +  +A  VS++VD L +
Sbjct: 464 AKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCR 500



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  ++   + AL  + E++ K ++PD    + +  GL +  Q++ A +  + MQ+ G
Sbjct: 319 LIHGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSG 378

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +   Y + ID  CK+G + E++     +  +  E ++  YS LIDG  K+G +EIA+
Sbjct: 379 IALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAM 438

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +    +  +VVTY+ +IHG   +G MD A  L  +MEE  +  N IT   L+ G 
Sbjct: 439 AIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGL 498

Query: 182 IRINEPSKVIELL-----HKMKEKN 201
            R N     +  +      K  EKN
Sbjct: 499 CRENRVQDAVRFIMEYSGQKKSEKN 523



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 105/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G  K   +     L+ EML +G+ P VV +NTL         V +A++++D+M    
Sbjct: 144 ILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARR 203

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I  LC+   I ++  LF  ++      ++  Y+ L+    K   ++ AL
Sbjct: 204 IDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHAL 263

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             ++ L +  LV + V ++ +I GL    ++ +A ++FLDM    VAP V  + +LIHG 
Sbjct: 264 VFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGA 323

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R     + +    ++  K + PD    SIVV
Sbjct: 324 FRSGYAQEALAFFQEIIRKELRPDEFTCSIVV 355



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 102/218 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C+   I  A  L+ EM   G++P++  +N L    F+   ++ A   + ++ + G
Sbjct: 214 MIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCG 273

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   +T  IDGLCK   I E+  +F  +   +    +  Y+ LI G  +SG  + AL
Sbjct: 274 LVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEAL 333

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + R  L  D  T SI++ GL + GQM  A      M+++ +A N   +  LI  +
Sbjct: 334 AFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEY 393

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     + +    +M E  V P+    S ++D  +KN
Sbjct: 394 CKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKN 431



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 6/210 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ YCK+  ++ AL   + M   G++P+VV +++L  G  +  ++E A  ++ EM   
Sbjct: 388 VLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAK 447

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TYT  I G  KNG +  +  L + +       +    S L+DGLC+  R++ A
Sbjct: 448 GVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507

Query: 121 LELFHSLP------RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           +             +   +A+ VTY  +I+GLY DGQ ++A   F  M ++ + P+  T+
Sbjct: 508 VRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTY 567

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
             +I G   +      + L   M +  V P
Sbjct: 568 TLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 103/232 (44%), Gaps = 6/232 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C   +++ A      M   GI  +   +N L     +   ++ A      M   
Sbjct: 353 IVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEV 412

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY+  IDG  KNG +  ++ ++  +     E ++  Y+ LI G  K+G ++ A
Sbjct: 413 GVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAA 472

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM------EENAVAPNVITF 174
             L   +    + ++ +T S+++ GL  + ++  A    ++       E+N    N +T+
Sbjct: 473 FWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTY 532

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            TLI+G     + ++       M++  ++PD    ++V+  L      LN++
Sbjct: 533 MTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAM 584



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E++ +F  LR L     + A + ++DGL K+  L    ELF  +    +V  VVTY+ +I
Sbjct: 124 EALSVFGRLRELPA---LPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLI 180

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           +   + G + KA +++  M    + PNV+T+ T+I+     +       L  +MKE  + 
Sbjct: 181 NACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMR 240

Query: 204 PD 205
           P+
Sbjct: 241 PN 242


>gi|115457858|ref|NP_001052529.1| Os04g0350000 [Oryza sativa Japonica Group]
 gi|113564100|dbj|BAF14443.1| Os04g0350000, partial [Oryza sativa Japonica Group]
          Length = 263

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK+  I+ AL L+ +ML K +    V +N +  GLF+  +   A ++F EM   G
Sbjct: 19  LVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESG 78

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY   + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 79  MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAK 138

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV  ++TY +MI  L  +   + A +LF  ME+++  P+      +I   
Sbjct: 139 ELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRML 198

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   E +K    L K+ +K ++P+A+  S+++ L + N
Sbjct: 199 LNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVN 236



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 81/167 (48%)

Query: 54  FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
            D M+  GV  D  TY   +DG CK+G I +++ LFR +   +  L   +Y+ ++ GL +
Sbjct: 1   LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQ 60

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           + R  +A E+FH +    +   + TY+ ++ GL  +   D+A+ L   +    V  +++T
Sbjct: 61  ARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILT 120

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F  +I    ++    +  EL   +    ++P      +++  L K E
Sbjct: 121 FNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEE 167


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 111/204 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K+K ++ A+NLY +++S+G  P    +  L  GL +   +E A  LFDEM   G
Sbjct: 145 IISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG 204

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y I ++G    G   +  ELF ++       DI++Y+ +ID LC  GRL   L
Sbjct: 205 CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGL 264

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  L    L  D++TY+++IHGL   G++++A  L+ DME+  +APN+ T+ +LI   
Sbjct: 265 SYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 324

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  + ++  ++  ++  K   P+
Sbjct: 325 GKAGKAAEAGKMYEELLAKGWKPN 348



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 106/206 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K+  IE A  L+ EML  G +P+  I+N L  G       E+  +LF+ M   G
Sbjct: 180 LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 239

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D ++YT+ ID LC +G + + +  F+ L  +  E D+  Y+ LI GL KSGRLE AL
Sbjct: 240 MNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEAL 299

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ + +  +  ++ TY+ +I  L   G+  +A  ++ ++      PNV T+  LI G+
Sbjct: 300 SLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGY 359

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
                P        +M      P++S
Sbjct: 360 SVSGSPENAFAAYGRMIVGGCRPNSS 385



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++   K+  IE  L +  EM +KG K   V +NT+  GL +   ++ A  L+ ++  +
Sbjct: 109 LILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE 168

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    TY   +DGL K+G I ++  LF  +    CE +   Y+ L++G   +G  E  
Sbjct: 169 GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKV 228

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF S+    +  D+ +Y+++I  L  DG+++     F  + +  + P++IT+  LIHG
Sbjct: 229 CELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHG 288

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + + L + M++K + P+    + ++  L K
Sbjct: 289 LGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGK 326



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 97/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K    E ++     + S G+  D +  + +   L +  +   A +L  + +  G
Sbjct: 5   LMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLG 64

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+  T +Y   I GL     I  + ELF  ++ L C+ D   Y  ++D + KS R+E  L
Sbjct: 65  VSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDML 124

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +      +  VTY+ +I GL     +D+A +L+  +     +P   T+G L+ G 
Sbjct: 125 KIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGL 184

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++         L  +M E    P+ +I +I+++
Sbjct: 185 LKDGNIEDAEALFDEMLECGCEPNCAIYNILLN 217



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 80/185 (43%)

Query: 35  NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           ++L  G+ +    E++ +  + +   G+  D    +  I  LCK+   + + EL +    
Sbjct: 3   HSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFEN 62

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
           L   L   +Y+ LI GL     ++IA ELF  + R     D  TY +++  +    +++ 
Sbjct: 63  LGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIED 122

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
              +  +M         +T+ T+I G ++     + I L +++  +   P       ++D
Sbjct: 123 MLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLD 182

Query: 215 LLAKN 219
            L K+
Sbjct: 183 GLLKD 187


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+CK  ++  A +L  +M  KG + D + +NTL  G   + +++RA++L +EM+ + 
Sbjct: 263 VIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSND 322

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCKSGRLEIA 120
              D  TY I I GLC+   + E+ +L  TLR    C  ++ +Y+ LIDG  K+ R+  A
Sbjct: 323 FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDA 382

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +       DVVTYS +I GL N G+  +AH    +M    + P V  + ++I G
Sbjct: 383 YQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISG 442

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             R  E      +   M      P+ ++ + ++  L K 
Sbjct: 443 LCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKT 481



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C   +++ A +LY EM+ +G++P V+    L   L +   +E A + F++M   
Sbjct: 130 ILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSI 189

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             AA   T+TI IDGL +   + E+   F  ++      +   Y+ +I+GL K+G++  A
Sbjct: 190 PCAA---TWTILIDGLFRAIRVDEACYYFEEMKHTAIP-NNWTYTVVINGLVKAGKVAEA 245

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +P    V  +  Y+ +I G    G M KA+ L  DM+      + +T+ TLIHG
Sbjct: 246 ERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHG 301

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ E  +  ELL +MK  + +PD     I++  L +
Sbjct: 302 HCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCR 339



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 1/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ILI G C+ K +  A +L   + ++    P+VV +NTL  G  +  +V  A++LF EM  
Sbjct: 332 ILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVT 391

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  TY+  I GLC  G   E+      +   K    +  YS +I GLC++G L+ 
Sbjct: 392 AGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDA 451

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +F S+       ++  Y+ +I+GL   G++  A     +M E   +P+ +T+GTLI 
Sbjct: 452 ASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIV 511

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           G  R +   +  +L  +  E+ +    +  ++V+  L
Sbjct: 512 GLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASL 548



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 9/218 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N  CK+  +E AL  + +M S    P       L  GLF   +V+ A   F+EM+   
Sbjct: 166 LLNALCKSGNLELALRYFEKMSSI---PCAATWTILIDGLFRAIRVDEACYYFEEMKHTA 222

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT+ I+GL K G + E+  + + + +      +  Y+ +I G CK+G +  A 
Sbjct: 223 IP-NNWTYTVVINGLVKAGKVAEAERVLQEMPVPT----LANYTSVIGGHCKAGDMGKAY 277

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R     D +TY+ +IHG     ++D+A++L  +M+ N   P++ T+  LI G 
Sbjct: 278 HLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGL 337

Query: 182 IRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDLLAK 218
            R    S+  +LL  ++ E +  P+    + ++D  +K
Sbjct: 338 CRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSK 375



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK   +  A  L  +M+  GIKPD    + L   +    +   A    +EM R G
Sbjct: 576 VIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLG 635

Query: 62  VAADTRTYTIFIDGLCKNGYIVES-VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                 TY+  ++ L K G   E+ V L R +    C  D   Y  LI       ++E A
Sbjct: 636 SKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEA 695

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   L     +  +V Y+ ++ GL+    +   ++L  +M+ N    N  TF  LI G
Sbjct: 696 RNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQG 755

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F R+ +  + + +L +MK K + P A+I+  +VD LA+ E
Sbjct: 756 FCRLGQTDRAVRVLSEMK-KVLTPSAAIIKFLVDELARAE 794



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 18/171 (10%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF---- 89
           +N  +  L    Q E A++LF E     +  D+ TY I I GLC  G +  +  L+    
Sbjct: 93  YNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMV 152

Query: 90  -RTLR--ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            R LR  +L C+        L++ LCKSG LE+AL  F  +     +    T++I+I GL
Sbjct: 153 DRGLRPVVLTCKF-------LLNALCKSGNLELALRYFEKMSS---IPCAATWTILIDGL 202

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           +   ++D+A   F +M+  A+ PN  T+  +I+G ++  + ++   +L +M
Sbjct: 203 FRAIRVDEACYYFEEMKHTAI-PNNWTYTVVINGLVKAGKVAEAERVLQEM 252



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 3/116 (2%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           +  Y+C  + L ++G+ E A  LF       L+ D +TY I+I GL N G++  A  L+ 
Sbjct: 90  VHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYE 149

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +M +  + P V+T   L++   +       +    KM     +P A+  +I++D L
Sbjct: 150 EMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSS---IPCAATWTILIDGL 202



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 33/232 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------- 54
           LI G CK   +  A     EM  +G  PD V + TL +GL    + + A  L+       
Sbjct: 474 LIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQG 533

Query: 55  ------------------DEMQR-------DGVAADTRTYTIFIDGLCKNGYIVESVELF 89
                             ++ QR        G +     Y   I+ LCK   + E+ +L 
Sbjct: 534 IEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLL 593

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             +     + D      L+  +C+  +  +A+     + R      V TYS +++ L+  
Sbjct: 594 EDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKA 653

Query: 150 GQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           G+  +AH +   +    +  P+ + +  LI  +   ++  +   +L ++K K
Sbjct: 654 GKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSK 705



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY  F + L + G   E+  LF+     +   D   Y  LI GLC  G+L++A  L+  +
Sbjct: 92  TYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEM 151

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               L   V+T   +++ L   G ++ A   F   E+ +  P   T+  LI G  R    
Sbjct: 152 VDRGLRPVVLTCKFLLNALCKSGNLELALRYF---EKMSSIPCAATWTILIDGLFRAIRV 208

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +      +MK    +P+    ++V++ L K
Sbjct: 209 DEACYYFEEMKH-TAIPNNWTYTVVINGLVK 238



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 38/84 (45%)

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V TY+     L   GQ ++A+ LF +     + P+ IT+G LI G     +      L  
Sbjct: 90  VHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYE 149

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
           +M ++ + P       +++ L K+
Sbjct: 150 EMVDRGLRPVVLTCKFLLNALCKS 173


>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 376

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK  ++E A+++ + M+  G KP+  ++N L  GL    + + A ++F EM    
Sbjct: 135 MINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGTTD 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+I IDGLCK     E+ +L + +        +  YS L+ GLC   ++E+AL
Sbjct: 195 CPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ + +     DV  ++I+IHGL + G+   A  L+LDM     APN++T  TL+ GF
Sbjct: 255 QLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +       + +  ++ +  + PD    +I +  L + N IS
Sbjct: 315 YKDGNVRNALVIWARILKNELQPDIISYNITLKGLCSCNRIS 356



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 4/245 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ +   ++    L+ EM+ +     V   N +  GLF+  +VE A  +++ M + G
Sbjct: 31  MLNGFYRAGRMKDCFELW-EMMGREGSRSVASFNIMMRGLFDNRKVEEAMSIWELMTKSG 89

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNGYI +S+ +          LD  AYS +I+ LCK  +LE A+
Sbjct: 90  FVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYSAMINALCKESKLEKAV 149

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + R     +   Y+ +I GL    + D A  +F +M      PN+ T+  LI G 
Sbjct: 150 SVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSILIDGL 209

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLNSLPSFTVHERQEEV 238
            +     +  +L+ +M EK + P     S+++  L    K E++L      T    + +V
Sbjct: 210 CKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDV 269

Query: 239 DESNV 243
              N+
Sbjct: 270 QMHNI 274



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C++ +I+GA  +Y +++   + PD V++N +  G +   +++  F+L++ M R+G +   
Sbjct: 1   CESGDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREG-SRSV 59

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            ++ I + GL  N  + E++ ++  +       D   Y  L+ G CK+G +  +L +   
Sbjct: 60  ASFNIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEI 119

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
             +   V D   YS MI+ L  + +++KA  +   M  +   PN   +  LI G I  ++
Sbjct: 120 AEQKGGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASK 179

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               + +  +M   +  P+ +  SI++D L K E
Sbjct: 180 RDDAVRIFREMGTTDCPPNIATYSILIDGLCKGE 213



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK +    A +L  EML KG+ P V+ ++ L  GL   H+VE A +L++++ + 
Sbjct: 204 ILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKK 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D + + I I GLC  G    ++ L+  +    C  ++   + L++G  K G +  A
Sbjct: 264 GFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNA 323

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           L ++  + +  L  D+++Y+I + GL +  ++  A     D     + P  IT
Sbjct: 324 LVIWARILKNELQPDIISYNITLKGLCSCNRISDAIWFLHDAVRKKIIPTKIT 376


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G     ++  AL+L+  M+  G +P+VV +NTL  GL     +E A ++ D+MQR G
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+I IDG  K+G +V + E +  +    C  ++  Y+C++D LCK+   + A 
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       + +T++  I GL  +G+++ A  L   M+ +   PN+ T+  L+   
Sbjct: 440 SLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R+N+  +   L  +++ +N+ P+
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPN 523



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   IE A+ L  EM+  G+ P+VV ++ +   L     VE AF LF +M   G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  T+T  I G    G + E+++L++ +    CE ++ AY+ LI GLC +G LE AL
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + R   + +V TYSI+I G    G +  A + +  M  +   PNV+T+  ++   
Sbjct: 370 QVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVL 429

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + +   +   L+ KM  +   P+    +  +  L  N
Sbjct: 430 CKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGN 467



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 30/251 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVV---------------------------- 32
           IL+   CKN  ++ A  L+ EM +KG  PD V                            
Sbjct: 184 ILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPS 243

Query: 33  --IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
             ++N L  G+ +  ++E A KL  EM  +GV  +  +Y+  I+ LC +G +  +  LF 
Sbjct: 244 VPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFA 303

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            + +  C+ +I  ++ LI G    G+L  AL+L+  + +     +VV Y+ +IHGL ++G
Sbjct: 304 QMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNG 363

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            +++A  +   M+ +   PNV T+  LI GF +  +     E  ++M      P+    +
Sbjct: 364 SLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYT 423

Query: 211 IVVDLLAKNEI 221
            +VD+L KN +
Sbjct: 424 CMVDVLCKNSM 434



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 112/208 (53%), Gaps = 5/208 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ K+ ++ GA   ++ M+S G +P+VV +  +   L +    ++A  L ++M  +
Sbjct: 389 ILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE 448

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T T+  FI GLC NG +  +++L   ++   C  +I  Y+ L+D L +  + E A
Sbjct: 449 GCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA 508

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    L  ++VTY+ +++G    G M +A  LF        AP+ IT+ T+IH 
Sbjct: 509 FGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHA 568

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPD 205
           +    ++   ++++E +  MKE +  PD
Sbjct: 569 YCKQGKVKIAAQLVERVSSMKEWH--PD 594



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C N  +E AL +  +M   G  P+V  ++ L  G  +   +  A + ++ M   G
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  +D LCKN    ++  L   + +  C  +   ++  I GLC +GR+E A+
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAM 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +     + ++ TY+ ++  L+   + ++A  LF ++E   + PN++T+ T+++GF
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGF 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     + ++L  K   +   PD+   + ++    K
Sbjct: 535 SRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  C +  +E A  L+++M  +G   ++     L  G F   ++  A  L+  M +DG
Sbjct: 285 IINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   I GLC NG + E++++   ++   C  ++  YS LIDG  KSG L  A 
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGAS 404

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E ++ +       +VVTY+ M+  L  +   D+A+ L   M      PN ITF T I G 
Sbjct: 405 ETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGL 464

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                    ++LL +M+    +P+ +  + ++D L +
Sbjct: 465 CGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 65/283 (22%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGY +    E AL ++  +   G KP V I+N L   L   ++ +    L+  M++DG
Sbjct: 115 IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDG 174

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD--------------------- 100
           +  +  TY I +  LCKN  +  + +LF  +    C  D                     
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR 234

Query: 101 ---------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH------- 144
                    +  Y+ LIDG+CK GR+E+A++L   +    +  +VV+YS +I+       
Sbjct: 235 ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 145 ----------------------------GLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
                                       G +  G++ +A DL+  M ++   PNV+ + T
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LIHG        + +++  +M+    +P+ +  SI++D  AK+
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKS 397



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 3/182 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G C N  +E A+ L   M   G  P++  +N L   LF +++ E AF LF E++   
Sbjct: 460 FIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARN 519

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   + G  + G + E+++LF    +     D   Y+ +I   CK G+++IA 
Sbjct: 520 LQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAA 579

Query: 122 ELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
           +L   +        D++TY+ +I G  N   +++A   FLD   N  + PN  T+  L+ 
Sbjct: 580 QLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAM-AFLDKAINQGICPNFATWNALVR 638

Query: 180 GF 181
            F
Sbjct: 639 CF 640



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +  +M+ DG+      +   I+G  + G   +++++F  +    C+  ++ Y+ L+D L 
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
              + ++   L+ ++ +  L+ +V TY+I++  L  + ++D AH LF++M      P+ +
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T+ T++    +  +     EL  + K     P   + + ++D + K
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCK 256


>gi|255660974|gb|ACU25656.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 372

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ A+++ + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 134 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 193

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   R+E AL
Sbjct: 194 CSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERAL 253

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 254 XLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 313

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I ++ L + N IS
Sbjct: 314 YKDGDIRNALVIWARILRNGLEPDIISYNITLEGLCSCNRIS 355



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 110/212 (51%), Gaps = 1/212 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGY +  +I+    L+  M S+G +  V   N +  GLF+  +V+    +++ M+  G
Sbjct: 30  MLNGYFRVAKIKDCFELWEMMGSEGNRS-VSSFNIMMRGLFDNGKVDEVISIWELMKESG 88

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNGYI +S+ +          LD  AYS +I+GLCK   L+ A+
Sbjct: 89  FVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRAV 148

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + +     +V  Y+ +I+GL    + + A  +F +M     +P +IT+ TLI+G 
Sbjct: 149 SVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGL 208

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     +   L+ ++ +K + P     S+++
Sbjct: 209 CKNKMFGEAYNLVKELLDKGLDPGVITYSMLM 240



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 1/211 (0%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +I+GA  +Y E++   + PD V++N +  G F + +++  F+L++ M  +G  +   ++ 
Sbjct: 4   DIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRS-VSSFN 62

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I + GL  NG + E + ++  ++      D   Y  L+ G CK+G ++ +L +     + 
Sbjct: 63  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 122

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
             V D   YS MI+GL  +  +D+A  +   M ++   PNV  + TLI+G +  ++    
Sbjct: 123 GGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDA 182

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           I +  +M   +  P     + +++ L KN++
Sbjct: 183 IRVFREMGTMHCSPTIITYNTLINGLCKNKM 213



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 105/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 63  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 122

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  +V +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 123 GGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDA 182

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 183 IRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKG 242

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               +   + + L +++  K   PD  + +I++
Sbjct: 243 LCLDHRVERALXLWNQVTSKGFKPDVQMHNILI 275



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C +  +E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 238 MLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRW 297

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  ++GLC   R+ 
Sbjct: 298 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLEGLCSCNRIS 355

Query: 119 IALELFH 125
            A+   H
Sbjct: 356 DAILFLH 362


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y  MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+   M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPD 275


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 97/182 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C    +  A+ +   M+   ++P++V  NTL  GL    QV  A  L D M   G
Sbjct: 157 LVNGLCLEGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHG 216

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   ++ +CK+G  V +++L R +   K +  +  Y+ +ID LCK+G  + AL
Sbjct: 217 CQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEAL 276

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ + R  + ADV+TY+ +I G  N G+ D    L  DM    + PNV+TF  LI  F
Sbjct: 277 SLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCF 336

Query: 182 IR 183
           ++
Sbjct: 337 VK 338



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 107/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +C+ +++  A ++  ++L  G +PD V  +TL  GL    +V  A  + D M   
Sbjct: 121 IVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEM 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +  T    ++GLC    + E+  L   +    C+ D   Y  +++ +CKSG    A
Sbjct: 181 KVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    +   VVTY+++I  L  +G  D+A  LF +ME   +  +VIT+ +LI G
Sbjct: 241 LDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGG 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F          +LL  M  +N+ P+    S ++D   K
Sbjct: 301 FCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCFVK 338



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 107/223 (47%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           + A++L+  M+     P ++  + LF  + +  Q E    L  +M+  G+A    T +I 
Sbjct: 63  DDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIV 122

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I+  C+   +  +  +   +  L  E D   +S L++GLC  GR+  A+ +   +    +
Sbjct: 123 INCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKV 182

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             ++VT + +++GL    Q+ +A  L   M E+   P+  T+G +++   +       ++
Sbjct: 183 RPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALD 242

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           LL KM++K V P     ++++D L KN     +L  F   ER+
Sbjct: 243 LLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMERE 285



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C   ++  A  L   M+  G +PD   +  +   + +      A  L  +M+   
Sbjct: 192 LVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKK 251

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V     TY + ID LCKNG   E++ LF  +     + D+  Y+ LI G C +GR +   
Sbjct: 252 VKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGA 311

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           +L   +    +  +VVT+S +I     +G++   H
Sbjct: 312 QLLRDMITRNITPNVVTFSALIDCFVKEGKLINEH 346


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY KN  I   L L+ EM  KG+KP+ V +  +  GLF   +   A K F EM   G
Sbjct: 622 LLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y I + GLC+N    E++ LF+ L  +  +  I   + +I+ + K  R E A 
Sbjct: 682 TTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAK 741

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    L+ +  TY +MI  L  DG ++ A+++F  ME++ + P       +I   
Sbjct: 742 ELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRML 801

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   E +K    L K+  K ++ +AS  S+++ L ++
Sbjct: 802 LEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSR 838



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 2/237 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           I++   C N   + AL+L   M  +G    PDVV ++T+  G F   +  +A  LF EM 
Sbjct: 233 IVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMT 292

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R GV  D  TY + ID LCK   + ++  + R +     + D   YSC+I G    GRL+
Sbjct: 293 RQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLK 352

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A ++F  + +  L+ ++VT +  +  L   G+  +A + F  M      P++ ++ TL+
Sbjct: 353 EAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLL 412

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           HG+      + +I L + MK   +  +  + +I++   AK  +  +++  FT  ++Q
Sbjct: 413 HGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQ 469



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 115/214 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK + ++ A  +  +M + G +PD V ++ +  G   + +++ A K+F EM++ 
Sbjct: 305 LIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKR 364

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T   F+  LCK+G   E+ E F ++     + DI +Y  L+ G    G     
Sbjct: 365 GLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADM 424

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF+S+    + A+   ++I+IH     G +D A  +F +M++  V+P+V+T+ T+I  
Sbjct: 425 IGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIST 484

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F R+   +  +E  ++M  + + P+ ++ S ++ 
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQ 518



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+    E   A +L+ EM  +G+KPDVV +N +   L +   +++A  +  +M  DG
Sbjct: 271 VIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDG 330

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY+  I G    G + E+ ++FR ++      +I   +  +  LCK GR + A 
Sbjct: 331 AQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAA 390

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E F S+       D+ +Y  ++HG  ++G       LF  M+ N +A N   F  LIH +
Sbjct: 391 EFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAY 450

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       + +  +M+++ V PD    S V+   ++
Sbjct: 451 AKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR 487



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 124/259 (47%), Gaps = 38/259 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ Y K   ++ A+ +++EM  +G+ PDVV ++T+      + ++  A + F++M   
Sbjct: 445 ILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVAR 504

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQAYSCLIDGLCKSGRL- 117
           G+  +T  Y+  I G C +G +V++ EL   + I K     DI  +S +I+ LCK GR+ 
Sbjct: 505 GIQPNTAVYSSIIQGFCMHGGLVKAKELVSEM-INKGIPRPDIVFFSSVINSLCKDGRVM 563

Query: 118 ------EIALEL--------FHSLPRGVLV--------------------ADVVTYSIMI 143
                 ++A ++        F+SL  G  +                     D+VTY+ ++
Sbjct: 564 DAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLL 623

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            G + +G+++    LF +M+   V PN +T+G ++ G  R        +  H+M E    
Sbjct: 624 DGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTT 683

Query: 204 PDASIVSIVVDLLAKNEIS 222
              SI  I++  L +N  +
Sbjct: 684 VTVSIYGIILGGLCRNNCA 702



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I G+C +  +  A  L SEM++KGI +PD+V  +++   L +  +V  A  +FD     
Sbjct: 516 IIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDI 575

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+   IDG C  G + ++ ++   + ++  E DI  Y+ L+DG  K+GR+   
Sbjct: 576 GERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDG 635

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  + R  +  + VTY IM+ GL+  G+   A   F +M E+     V  +G ++ G
Sbjct: 636 LTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGG 695

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   + I L  K+   NV    +I++ +++ + K
Sbjct: 696 LCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 18/244 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQR 59
           IL++  C+ +  +  L L+  +L  G+K D +  NTL   L   ++ E A   L   M  
Sbjct: 162 ILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSE 221

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRL 117
            G   +  +Y+I +  LC N     +++L + +  +   C  D+ AYS +I G    G  
Sbjct: 222 LGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGET 281

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A  LFH + R  +  DVVTY+++I  L     MDKA  +   M  +   P+ +T+  +
Sbjct: 282 GKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCM 341

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS-LPSFTVHERQE 236
           IHG+  +    +  ++  +MK++ ++P              N ++ NS L S   H R +
Sbjct: 342 IHGYATLGRLKEAAKMFREMKKRGLIP--------------NIVTCNSFLASLCKHGRSK 387

Query: 237 EVDE 240
           E  E
Sbjct: 388 EAAE 391



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 1/235 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY         + L++ M S GI  +  +   L     +   V+ A  +F EMQ+ G
Sbjct: 411 LLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY+  I    + G + +++E F  +     + +   YS +I G C  G L  A 
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK 530

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL   +  +G+   D+V +S +I+ L  DG++  AHD+F    +    P VITF +LI G
Sbjct: 531 ELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDG 590

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
           +  + +  K  ++L  M+   V PD    + ++D   KN    + L  F   +R+
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRK 645



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 105/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK+  +  A +++      G +P V+  N+L  G   + ++++AFK+ D M+  G
Sbjct: 552 VINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVG 611

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +DG  KNG I + + LFR ++    + +   Y  ++ GL ++GR   A 
Sbjct: 612 VEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAAR 671

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH +        V  Y I++ GL  +   D+A  LF  +    V  ++    T+I+  
Sbjct: 672 KKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAM 731

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  EL   +    ++P+ S   +++  L K+
Sbjct: 732 YKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKD 769



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY     ++ A  ++ EM  +G+ P++V  N+    L +  + + A + FD M   G
Sbjct: 341 MIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKG 400

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y   + G    G   + + LF +++      +   ++ LI    K G ++ A+
Sbjct: 401 HKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAM 460

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +  DVVTYS +I      G++  A + F  M    + PN   + ++I GF
Sbjct: 461 LIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGF 520

Query: 182 IRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAKN 219
                  K  EL+ +M  K +  PD    S V++ L K+
Sbjct: 521 CMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKD 559



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 51/220 (23%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCK----NGYIVESVELFRTL--RILKCELDIQ- 102
           A  +FDE+ R       R+   F+  L +    +  I +   L   L  R+ + E   Q 
Sbjct: 93  AHHMFDELFRQATPVPGRSLNGFLAALARATSSSACITDGPALALALFNRVCREEAGTQV 152

Query: 103 ------AYSCLIDGLCKSGRLEIALELFHSLPRGVL------------------------ 132
                  Y+ L+D  C++ R ++ L LF  + R  L                        
Sbjct: 153 AVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAV 212

Query: 133 ------------VADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLI 178
                       V + V+YSI++  L ++    +A DL   M  +  A +P+V+ + T+I
Sbjct: 213 NVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVI 272

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           HGF    E  K   L H+M  + V PD    ++++D L K
Sbjct: 273 HGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCK 312



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 51/92 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C+N   + A+ L+ ++ +  +K  + I NT+   ++++ + E A +LF  +   
Sbjct: 691 IILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISAS 750

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G+  +  TY + I  L K+G + ++  +F ++
Sbjct: 751 GLLPNESTYGVMIINLLKDGGVEDANNMFSSM 782


>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
          Length = 238

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 111/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+  +I  A+ +Y EM   G  P ++ +NTL  GL +  + + A  L  EM   G
Sbjct: 16  LINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERG 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D RTY   I GLC+   I  ++ ++  +     ++D+  ++ LI GLC +G++  A 
Sbjct: 76  FKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCSAGKVNDAF 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +       ++VTY+ ++ G Y  G +D A  L+  + +N + P+++T+ T I G 
Sbjct: 136 CIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIVTYNTRIKGL 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              N   + + LL+++    +MP     SI+V
Sbjct: 196 CSCNRTPEGVLLLNEVLATGIMPSVITWSILV 227



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 98/184 (53%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M+  G KP+  ++N L  G     ++  A K++ EM  +G      TY   IDGLCK   
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEK 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
             E+  L + +     + DI+ Y  LI GLC+  +++ AL +++ +    +  DV+ ++I
Sbjct: 61  YQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNI 120

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +IHGL + G+++ A  ++L+M+E   +PN++T+ TL+ GF  I        L   + +  
Sbjct: 121 LIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNG 180

Query: 202 VMPD 205
           + PD
Sbjct: 181 LKPD 184



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 98/182 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK ++ + A +L  EML +G KPD+  + +L  GL  + +++ A  +++E+   G
Sbjct: 51  LIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAG 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   + I I GLC  G + ++  ++  ++   C  ++  Y+ L+DG  + G ++ A 
Sbjct: 111 IQVDVIVHNILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAA 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+ ++    L  D+VTY+  I GL +  +  +   L  ++    + P+VIT+  L+   
Sbjct: 171 SLWAAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPSVITWSILVRAV 230

Query: 182 IR 183
           IR
Sbjct: 231 IR 232



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 79/151 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C+ K+I+ AL +++E+L  GI+ DV++HN L  GL    +V  AF ++ EM+   
Sbjct: 86  LIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCSAGKVNDAFCIYLEMKEKN 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   +DG  + G I  +  L+  +     + DI  Y+  I GLC   R    +
Sbjct: 146 CSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIVTYNTRIKGLCSCNRTPEGV 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
            L + +    ++  V+T+SI++  +   G +
Sbjct: 206 LLLNEVLATGIMPSVITWSILVRAVIRYGPI 236



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G C   ++  A  +Y EM  K   P++V +NTL  G +EI  ++ A  L+  +  +
Sbjct: 120 ILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDN 179

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+  D  TY   I GLC      E V L   +        +  +S L+  + + G ++I
Sbjct: 180 GLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPSVITWSILVRAVIRYGPIQI 238


>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           diamantinensis]
          Length = 284

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 106/180 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 92  ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXRLGDLDEGFRLKSAMLAS 151

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +Y++ I+GLCK   + ++ ELF  + +     +   ++ LIDG CK GR+++A
Sbjct: 152 GVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLA 211

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +A+DL  +M    + P+ IT+ TLI G
Sbjct: 212 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLIDG 271



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 89/156 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 128 LMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKG 187

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  T+T  IDG CK G +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 188 LAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAN 247

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
           +L   +    L  D +TY+ +I G   +G +D A +
Sbjct: 248 DLIDEMGMKGLKPDKITYTTLIDGCCKEGNLDTAFE 283



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 66/122 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 162 VLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQ 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 222 SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLIDGCCKEGNLDTA 281

Query: 121 LE 122
            E
Sbjct: 282 FE 283



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 84/165 (50%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E+   G  A    + I +   CK+G I  +  +F  +        
Sbjct: 62  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 121

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +Y+ L++G  + G L+    L  ++    +  DV +YS++I+GL  + +MD A++LF 
Sbjct: 122 VVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFD 181

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M    +APN +TF TLI G  +       +E+  +M  ++++PD
Sbjct: 182 EMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPD 226



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 72/155 (46%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G+  +++E +R  R  K  +       +++ L K    ++    
Sbjct: 15  SDIYVFSGLITAYLESGFXHDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 74

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+ R
Sbjct: 75  YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXR 134

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 135 LGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCK 169


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 112/199 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+C+  +++ AL ++++M  +G +P+ V ++TL  GL +  +V  AF L  EM   G
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     T T  I  LC  G   ++  LF  ++   CE ++  Y+ LI GLC SG L++A+
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAI 375

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH + R  +  + VTY+ +I+ L  + ++  A  +   M  N  +PN++T+  +I G+
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGY 435

Query: 182 IRINEPSKVIELLHKMKEK 200
             + +P K + +++ M ++
Sbjct: 436 CILGDPKKAMLVMNNMLQR 454



 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 36/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYC +     AL +   M   G KPD   +  L  G  +I ++E AF LF+EM  DG
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY----------------- 104
           +  +  TYT  IDG CK+  +  +  L   ++   C  ++Q Y                 
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 105 ------------------SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                             + +IDGLCK+G   +ALE+F+ +     + +++TYS +I  L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             +G++++A +LF ++E + + P+ IT+  +I  +I   +       L +M +    P  
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTL 705

Query: 207 SIVSIVVDLLAKNE 220
               +++  L KNE
Sbjct: 706 WTYGVLIKGL-KNE 718



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN   +N+ I+ A  + + M   G  P++V +N +  G   +   ++A  + + M + G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +A+  TY   I G C +G    ++ +   +R   C+ D  +Y+ LI G CK  ++E A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    L  + VTY+ +I G   D ++D A  L   M+ +   PNV T+  LIHG 
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N  S   EL   M E+ + P+    + ++D L KN
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKN 613



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYC   + + A+ + + ML +G   ++V +NT+  G  +      A ++ D M+  G
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +YT  I G CK   +  +  LF  +       +   Y+ LIDG CK  +L+ A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + R     +V TY+++IHGL        A +L   M E  + PNV+T+  +I G 
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    S  +E+ +KM E+  +P+    S ++  L +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           ++ Y  MLS+G++P+++I+N +   L +   V  A  +  ++    ++ DT TYT  I G
Sbjct: 200 MDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
            C+   +  ++++F  +    CE +   YS LI+GLC SGR+  A +L   +    ++  
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
             T +  I  L + G  + A  LF+DM+     PNV T+  LI G          I L H
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFH 379

Query: 196 KMKEKNVMPDASIVSIVVDLLAKNE 220
           +M    V P+    + ++++L +N 
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENR 404



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 1/230 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C     E A  L+ +M +KG +P+V  +  L  GL     ++ A  LF  M RDGV  +T
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNT 390

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY   I+ L +N  I  +  +   +    C  +I  Y+ +I G C  G  + A+ + ++
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + +    A++VTY+ +I G  + G    A  +   M +    P+  ++  LI GF +I++
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
                 L ++M +  + P+    + ++D   K+E  L++  S   H ++ 
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE-KLDTATSLLEHMKRS 559



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           + R     D + + G+      Y+  +  L + G     ++ +  +     + ++  Y+ 
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +I+ LCK G +  A  +   +    +  D  TY+ MI G      +D A  +F  M +  
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
             PN +T+ TLI+G       ++  +L+ +M    ++P A
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           L   M+S+G+ PD   +N+L   L  +  V+ A  +F  M   G       Y   I  LC
Sbjct: 786 LLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 845

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
           +     E+   F  + +     D    + LIDGL + G  ++ +E  H
Sbjct: 846 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLH 893


>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 376

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ A+++ + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   R+E AL
Sbjct: 195 CSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 255 XLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I ++ L + N IS
Sbjct: 315 YKDGDIRNALVIWARILRNGLEPDIISYNITLEGLCSCNRIS 356



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 34/245 (13%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------------ 54
           C++ +I+GA  +Y E++   + PD V++N +  G F + +++  F+L+            
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 55  ---------------DE-------MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
                          DE       M+  G   D+ TY I + G CKNGYI +S+ +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 LD  AYS +I+GLCK   L+ A+ + + + +     +V  Y+ +I+GL    + 
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKF 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M     +P +IT+ TLI+G  +     +   L+ ++ +K + P     S++
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 213 VDLLA 217
           +  L 
Sbjct: 241 MKGLC 245



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 105/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  +V +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               +   + + L +++  K   PD  + +I++
Sbjct: 244 LCLDHRVERALXLWNQVTSKGFKPDVQMHNILI 276



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C +  +E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 239 MLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  ++GLC   R+ 
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLEGLCSCNRIS 356

Query: 119 IALELFH 125
            A+   H
Sbjct: 357 DAILFLH 363


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 109/220 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK  +I+ A++ + EM  K   PDV  ++TL  GL +  +V+ A  L DEMQ +
Sbjct: 179 LIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAE 238

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+ + ID L KNG +  + +L   + +  C  +   Y+ LI GLC  G+L+ A
Sbjct: 239 GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 298

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +     V + VTY  +I+GL    + +    + + MEE     N   + +LI G
Sbjct: 299 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 358

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +    + L  +M EK   P+  +    +D L ++E
Sbjct: 359 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 398



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 104/209 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK + ++ A+ L  EM ++G  P+ V  N L   L +   + RA KL D M   G
Sbjct: 215 LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKG 274

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I GLC  G + +++ L   +   KC  +   Y  +I+GL K  R E  +
Sbjct: 275 CVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGV 334

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  S+      A+   YS +I GL+ +G+ + A  L+ +M E    PNV+ +G  I G 
Sbjct: 335 HILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGL 394

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
            R  +P +  ++L +M  K  +P+A   S
Sbjct: 395 CRDEKPDEAEDILQEMLSKGFLPNAFTYS 423



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K  + E A+ L+ EM  KG KP+VV++     GL    + + A  +  EM   G
Sbjct: 355 LISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  + G  K G   +++ +++ +       ++   S L++GLC+SGRL  AL
Sbjct: 415 FLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREAL 474

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLI 178
            ++ H L  G L  DVV YS MI GL + G +DK   LF +M  +E    P+V+T+  L 
Sbjct: 475 TVWTHMLGEG-LKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILF 533

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +   R +  ++ I+LL+ M ++   PD+   +I ++ L
Sbjct: 534 NALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 571



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 107/203 (52%)

Query: 24  SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
           SKG +P+++ +N +   L ++ Q++RA   F EM       D  TY+  ++GLCK   + 
Sbjct: 167 SKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD 226

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E+V L   ++   C  +   ++ LID L K+G L  A +L  ++     V + VTY+ +I
Sbjct: 227 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 286

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           HGL   G++DKA  L   M  +   PN +T+GT+I+G ++       + +L  M+E+   
Sbjct: 287 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 346

Query: 204 PDASIVSIVVDLLAKNEISLNSL 226
            +  I S ++  L K   S N++
Sbjct: 347 ANEYIYSSLISGLFKEGKSENAV 369



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+   KN ++  A  L   M  KG  P+ V +NTL  GL    ++++A  L ++M   
Sbjct: 249 VLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 308

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   I+GL K     + V +  ++     + +   YS LI GL K G+ E A
Sbjct: 309 KCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENA 368

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L+  +       +VV Y   I GL  D + D+A D+  +M      PN  T+ +L+ G
Sbjct: 369 VRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKG 428

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +  K I +  +M  +++  +    S++++ L ++
Sbjct: 429 FFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCES 467



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   +++ AL+L  +M+S    P+ V + T+  GL +  + E    +   M+  G
Sbjct: 285 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+   Y+  I GL K G    +V L++ +    C+ ++  Y   IDGLC+  + + A 
Sbjct: 345 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAE 404

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     + +  TYS ++ G +  G   KA  ++ +M    +  NV+    L++G 
Sbjct: 405 DILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGL 464

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  + + +   M  + + PD    S ++
Sbjct: 465 CESGRLREALTVWTHMLGEGLKPDVVAYSSMI 496



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           +L+NG C++  +  AL +++ ML +G+KPDVV ++++  GL ++  V++  KLF EM  Q
Sbjct: 459 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQ 518

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
                 D  TY I  + LC+   +  +++L  ++    C+ D
Sbjct: 519 EPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 560


>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
 gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
 gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
 gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 105/199 (52%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y +ML  G  PDV+ +N +    F + + +R ++L DEM +DG + D  TY I +  L 
Sbjct: 244 VYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLA 303

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
                + ++ L   +R +  E  +  ++ LIDGL ++G+LE          +     DVV
Sbjct: 304 TGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVV 363

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y++MI G  + G+++KA ++F +M E    PNV T+ ++I GF    +  +   LL +M
Sbjct: 364 CYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEM 423

Query: 198 KEKNVMPDASIVSIVVDLL 216
           + +   P+  + S +V+ L
Sbjct: 424 ESRGCNPNFVVYSTLVNNL 442



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%)

Query: 14  GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
            ALNL + M   G++P V+   TL  GL    ++E      DE  + G   D   YT+ I
Sbjct: 310 AALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMI 369

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
            G    G + ++ E+F+ +       ++  Y+ +I G C +G+ + A  L   +      
Sbjct: 370 TGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCN 429

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
            + V YS +++ L N G++ +AH++  DM E  
Sbjct: 430 PNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 79/167 (47%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           +L DEM +DG      T+ + I    + G   + VE F   +         +Y+ ++  L
Sbjct: 173 RLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSL 232

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
               + ++   ++  +       DV+TY+I++   +  G+ D+ + L  +M ++  +P++
Sbjct: 233 LGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDL 292

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            T+  L+H     N+P   + LL+ M+E  V P     + ++D L++
Sbjct: 293 YTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSR 339



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  +  ++E       E +  G  PDVV +  +  G     ++E+A ++F EM   G
Sbjct: 333 LIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKG 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I G C  G   E+  L + +    C  +   YS L++ L  +G++  A 
Sbjct: 393 QLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAH 452

Query: 122 EL 123
           E+
Sbjct: 453 EV 454



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I GY    E+E A  ++ EM  KG  P+V  +N++  G     + + A  L  EM+  
Sbjct: 367 VMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESR 426

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G   +   Y+  ++ L   G ++E+ E+ + +
Sbjct: 427 GCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDM 458


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 109/220 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK  +I+ A++ + EM  K   PDV  ++TL  GL +  +V+ A  L DEMQ +
Sbjct: 203 LIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAE 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+ + ID L KNG +  + +L   + +  C  +   Y+ LI GLC  G+L+ A
Sbjct: 263 GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 322

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +     V + VTY  +I+GL    + +    + + MEE     N   + +LI G
Sbjct: 323 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  +    + L  +M EK   P+  +    +D L ++E
Sbjct: 383 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 422



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 104/209 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG CK + ++ A+ L  EM ++G  P+ V  N L   L +   + RA KL D M   G
Sbjct: 239 LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKG 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I GLC  G + +++ L   +   KC  +   Y  +I+GL K  R E  +
Sbjct: 299 CVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGV 358

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  S+      A+   YS +I GL+ +G+ + A  L+ +M E    PNV+ +G  I G 
Sbjct: 359 HILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGL 418

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
            R  +P +  ++L +M  K  +P+A   S
Sbjct: 419 CRDEKPDEAEDILQEMLSKGFLPNAFTYS 447



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  K  + E A+ L+ EM  KG KP+VV++     GL    + + A  +  EM   G
Sbjct: 379 LISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 438

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+  + G  K G   +++ +++ +       ++   S L++GLC+SGRL  AL
Sbjct: 439 FLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREAL 498

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM--EENAVAPNVITFGTLI 178
            ++ H L  G L  DVV YS MI GL + G +DK   LF +M  +E    P+V+T+  L 
Sbjct: 499 TVWTHMLGEG-LKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILF 557

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +   R +  ++ I+LL+ M ++   PD+   +I ++ L
Sbjct: 558 NALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 595



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 107/203 (52%)

Query: 24  SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83
           SKG +P+++ +N +   L ++ Q++RA   F EM       D  TY+  ++GLCK   + 
Sbjct: 191 SKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVD 250

Query: 84  ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
           E+V L   ++   C  +   ++ LID L K+G L  A +L  ++     V + VTY+ +I
Sbjct: 251 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 310

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
           HGL   G++DKA  L   M  +   PN +T+GT+I+G ++       + +L  M+E+   
Sbjct: 311 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 370

Query: 204 PDASIVSIVVDLLAKNEISLNSL 226
            +  I S ++  L K   S N++
Sbjct: 371 ANEYIYSSLISGLFKEGKSENAV 393



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+   KN ++  A  L   M  KG  P+ V +NTL  GL    ++++A  L ++M   
Sbjct: 273 VLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 332

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   I+GL K     + V +  ++     + +   YS LI GL K G+ E A
Sbjct: 333 KCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENA 392

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L+  +       +VV Y   I GL  D + D+A D+  +M      PN  T+ +L+ G
Sbjct: 393 VRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKG 452

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +  +  K I +  +M  +++  +    S++++ L ++
Sbjct: 453 FFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCES 491



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   +++ AL+L  +M+S    P+ V + T+  GL +  + E    +   M+  G
Sbjct: 309 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 368

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+   Y+  I GL K G    +V L++ +    C+ ++  Y   IDGLC+  + + A 
Sbjct: 369 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAE 428

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +     + +  TYS ++ G +  G   KA  ++ +M    +  NV+    L++G 
Sbjct: 429 DILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGL 488

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  + + +   M  + + PD    S ++
Sbjct: 489 CESGRLREALTVWTHMLGEGLKPDVVAYSSMI 520



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           +L+NG C++  +  AL +++ ML +G+KPDVV ++++  GL ++  V++  KLF EM  Q
Sbjct: 483 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQ 542

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
                 D  TY I  + LC+   +  +++L  ++    C+ D
Sbjct: 543 EPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 584


>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 114/204 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  + +E++ AL L+ ++ ++G  PDV+ +N L  GL+E H+ E A  LF+EM   G
Sbjct: 377 LLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY + IDG CKNG I +++    ++   + E ++  Y+ LIDGLCK+GR + A+
Sbjct: 437 LIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAV 496

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ + R     + V +   IHGL    + + A   F +MEE  + P+   + +L+  F
Sbjct: 497 MLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPDTYVYISLVSAF 556

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           + I+      E+L KM ++   PD
Sbjct: 557 VNISNFPMAFEILKKMVDRRNFPD 580



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 119/241 (49%), Gaps = 3/241 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING  +  +++ A+ L+ +M   G   D++++N L  GL    ++E ++KL  EM+  
Sbjct: 236 IVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEMEES 295

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T       LCK   +  +++L + +R+  CE  ++ Y+ L+  LCK G+   A
Sbjct: 296 GFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLCKHGKAAEA 355

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 + +     +++ YS ++ GL    ++D+A  LF D+      P+VI +  L+ G
Sbjct: 356 SIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKG 415

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEE 237
               +   +   L ++M  K ++P     ++++D   KN   + ++N L S +  ER+  
Sbjct: 416 LYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPN 475

Query: 238 V 238
           V
Sbjct: 476 V 476



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 4/219 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CK+ +   A    ++M+ +G  P+++ ++ L  GL E+ +V++A KLF ++   
Sbjct: 341 LLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISAR 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y I + GL +     E+  LF  + +      +  Y+ LIDG CK+G ++ A
Sbjct: 401 GRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +    S+       +V TY+ +I GL   G+ D A  L+ +M      PN + F   IHG
Sbjct: 461 MNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHG 520

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA----SIVSIVVDL 215
             + ++P   +   H+M+E+ + PD     S+VS  V++
Sbjct: 521 LCKCDKPEAALIHFHEMEEEEMEPDTYVYISLVSAFVNI 559



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING C +  +E +  L  EM   G KP     N++F  L +   V  A  L  +M+  G
Sbjct: 272 LINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYG 331

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                + YT+ +  LCK+G   E+      +       +I AYS L+ GL +   ++ AL
Sbjct: 332 CEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQAL 391

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       DV+ Y+I++ GLY   + ++A +LF +M    + P+V+T+  LI G+
Sbjct: 392 KLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGW 451

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       +  L  M  K   P+    + ++D L K
Sbjct: 452 CKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCK 488



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 113/236 (47%), Gaps = 24/236 (10%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G+C NK+++ AL+LY+EM    I+PD+ + + L      I       KL D ++  
Sbjct: 119 VLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKL------ISSFPEEGKLIDILEET 172

Query: 61  GVAADTRTYTIF----IDGLCKNGYIVESVELFRTL--------------RILKCELDIQ 102
               +  T T+     +  L  +G I ++  L R +              R  K   +  
Sbjct: 173 LEDMNIETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGNGDDDDVQYKLFRDEKIRPNTA 232

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           ++S +I+GL ++ +L++A+ LF  +       D++ Y+ +I+GL N  ++++++ L  +M
Sbjct: 233 SFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEM 292

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           EE+   P   T  ++     +  + S  ++L+ KM+     P     +++V  L K
Sbjct: 293 EESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLCK 348



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 104/233 (44%), Gaps = 16/233 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K   ++  + L+ +M   G+ PD+ +++ L  G     ++++A  L+ EM+   
Sbjct: 85  LIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLK 144

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D    +  I    + G +++ +E   TL  +  E      + ++  L  SG ++ A 
Sbjct: 145 IQPDIGVVSKLISSFPEEGKLIDILE--ETLEDMNIETQTLLCNSVLSSLVNSGLIDKAC 202

Query: 122 ELFHSLPRG--------------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
            L  ++                  +  +  ++SI+I+GL    ++D A  LF DM E   
Sbjct: 203 CLLRNMMGNGDDDDVQYKLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGC 262

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +++ +  LI+G    +   +  +LL +M+E    P    ++ +   L K +
Sbjct: 263 NRDLLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQ 315



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 16/213 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  + K  +++ +     +M  +  + +      L  G  +  +V++  +LF +MQ+ 
Sbjct: 49  ILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKY 108

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D   Y + I G C N  + +++ L+  +++LK + DI   S LI    + G+L   
Sbjct: 109 GLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEGKLIDI 168

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-------------- 166
           LE   +L    +    +  + ++  L N G +DKA  L  +M  N               
Sbjct: 169 LE--ETLEDMNIETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGNGDDDDVQYKLFRDEK 226

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           + PN  +F  +I+G ++  +    + L   M E
Sbjct: 227 IRPNTASFSIVINGLMQACKLDLAVCLFQDMAE 259



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 112 CKSGRLEIALELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           C +G+ + AL +F+ +   G L  D   +SI++      GQ+DK+ +    MEE     N
Sbjct: 21  CNAGKFDEALNVFNEIQDHGWL--DAYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLN 78

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             TF  LIHGF++ +   K ++L +KM++  + PD S+  +++     N+
Sbjct: 79  EKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNK 128



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           YC   + + ALN+++E+   G   D  + + L +   +  QV+++F+  ++M+      +
Sbjct: 20  YCNAGKFDEALNVFNEIQDHGWL-DAYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLN 78

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
            +T+   I G  K   + + V+LF  ++      DI  Y  LI G C + +L+ AL L+ 
Sbjct: 79  EKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYA 138

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQM 152
            +    +  D+   S +I     +G++
Sbjct: 139 EMKMLKIQPDIGVVSKLISSFPEEGKL 165



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 4/154 (2%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           + + A  +F+E+Q  G   D   ++I +    K G + +S E    +      L+ + + 
Sbjct: 25  KFDEALNVFNEIQDHG-WLDAYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEKTFC 83

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI G  K  R++  ++LF+ + +  L  D+  Y ++I G  ++ ++DKA  L+ +M+  
Sbjct: 84  NLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKML 143

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
            + P++     LI  F    E  K+I++L +  E
Sbjct: 144 KIQPDIGVVSKLISSF---PEEGKLIDILEETLE 174



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 1/157 (0%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G++    T T  +   C  G   E++ +F  ++     LD   +S L+    K G+
Sbjct: 1   MRDQGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQD-HGWLDAYVFSILVLSFSKWGQ 59

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           ++ + E    +       +  T+  +IHG     ++DK   LF  M++  ++P++  +  
Sbjct: 60  VDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDV 119

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           LI GF    +  K + L  +MK   + PD  +VS ++
Sbjct: 120 LIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLI 156


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 111/204 (54%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G  K+K ++ A+NLY +++S+G  P    +  L  GL +   +E A  LFDEM   G
Sbjct: 842  IISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG 901

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +   Y I ++G    G   +  ELF ++       DI++Y+ +ID LC  GRL   L
Sbjct: 902  CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGL 961

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
              F  L    L  D++TY+++IHGL   G++++A  L+ DME+  +APN+ T+ +LI   
Sbjct: 962  SYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 1021

Query: 182  IRINEPSKVIELLHKMKEKNVMPD 205
             +  + ++  ++  ++  K   P+
Sbjct: 1022 GKAGKAAEAGKMYEELLAKGWKPN 1045



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 106/206 (51%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L++G  K+  IE A  L+ EML  G +P+  I+N L  G       E+  +LF+ M   G
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YT+ ID LC +G + + +  F+ L  +  E D+  Y+ LI GL KSGRLE AL
Sbjct: 937  MNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEAL 996

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             L++ + +  +  ++ TY+ +I  L   G+  +A  ++ ++      PNV T+  LI G+
Sbjct: 997  SLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGY 1056

Query: 182  IRINEPSKVIELLHKMKEKNVMPDAS 207
                 P        +M      P++S
Sbjct: 1057 SVSGSPENAFAAYGRMIVGGCRPNSS 1082



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + IN + K+ E   AL  Y  M SKGI PDVV  N +  GL +  ++  A ++F E++  
Sbjct: 421 LFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAM 480

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TYT+ I    K     E++++F  +   +C  D+ A + LID L K+GR   A
Sbjct: 481 GISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEA 540

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F+ L    L     TY+ ++ GL  +G++ +   L   M  N+  PN+IT+ T++  
Sbjct: 541 WKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDC 600

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  E +  +++L+ M     MPD S  + V+  L K +
Sbjct: 601 LCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKED 640



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 108/202 (53%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           ++  C+   ++ AL+++ EM  KGI P    +N+L  G  +  +  RA +LF+ M   G 
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             +  T+ +FI+   K+G  +++++ +  ++      D+ A + ++ GL K+GRL +A  
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +FH L    +  D +TY++MI         D+A  +F +M EN  AP+V+   +LI    
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY 532

Query: 183 RINEPSKVIELLHKMKEKNVMP 204
           +    ++  ++ +++KE N+ P
Sbjct: 533 KAGRGNEAWKIFYELKEMNLEP 554



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++++   K+  IE  L +  EM +KG K   V +NT+  GL +   ++ A  L+ ++  +
Sbjct: 806  LILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE 865

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G +    TY   +DGL K+G I ++  LF  +    CE +   Y+ L++G   +G  E  
Sbjct: 866  GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKV 925

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ELF S+    +  D+ +Y+++I  L  DG+++     F  + +  + P++IT+  LIHG
Sbjct: 926  CELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHG 985

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +     + + L + M++K + P+    + ++  L K
Sbjct: 986  LGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGK 1023



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 117/229 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  + K ++ E  + L  EM ++G++P+V  +      L +  ++E A+++  +M+ +
Sbjct: 211 VLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEE 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T T+ I  LC  G + ++ ++F  ++    + D   Y  L+D    SG     
Sbjct: 271 GCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSV 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E++++L       +VV+Y+  +  L   G++D+A D+F +M++  + P   ++ +LI G
Sbjct: 331 SEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISG 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           F++ +  ++ +EL + M      P+     + ++   K+  SL +L  +
Sbjct: 391 FLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRY 439



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 111/208 (53%), Gaps = 4/208 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I    K    + A+ +++EM+     PDV+  N+L   L++  +   A+K+F E++  
Sbjct: 491 MMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM 550

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY   + GL + G + E ++L   +       +I  Y+ ++D LCK+G +  A
Sbjct: 551 NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYA 610

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++ +S+     + D+ +Y+ +++GL  + ++D+A  +F  M++  +AP+  T  T++  
Sbjct: 611 LDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKK-VLAPDYATVCTILPS 669

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
           F+R      + E LH ++E  + PD+ +
Sbjct: 670 FVR---SGLMKEALHTVREYILQPDSKV 694



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 115/241 (47%), Gaps = 3/241 (1%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           G  K   +  A  ++ E+ + GI PD + +  +     +    + A K+F EM  +  A 
Sbjct: 460 GLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAP 519

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D       ID L K G   E+ ++F  L+ +  E     Y+ L+ GL + G+++  ++L 
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL 579

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +       +++TY+ ++  L  +G+++ A D+   M  N   P++ ++ T+++G ++ 
Sbjct: 580 EGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKE 639

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH--ERQEEVDESN 242
           +   +   +  +MK K + PD + V  ++    ++ +   +L +   +  +   +VD S+
Sbjct: 640 DRLDEAFWMFCQMK-KVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSS 698

Query: 243 V 243
           V
Sbjct: 699 V 699



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 100/218 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C    +  A +++ +M +   KPD V + TL     +        ++++ ++ D
Sbjct: 281 VLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKAD 340

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  +YT  +D LC+ G + E++++F  ++         +Y+ LI G  K+ R   A
Sbjct: 341 GYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRA 400

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF+ +       +  T+ + I+     G+  KA   +  M+   + P+V+    +++G
Sbjct: 401 LELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYG 460

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +         + H++K   + PD    ++++   +K
Sbjct: 461 LAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSK 498



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 97/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K    E ++     + S G+  D +  + +   L +  +   A +L  + +  G
Sbjct: 702 LMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLG 761

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+  T +Y   I GL     I  + ELF  ++ L C+ D   Y  ++D + KS R+E  L
Sbjct: 762 VSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDML 821

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +      +  VTY+ +I GL     +D+A +L+  +     +P   T+G L+ G 
Sbjct: 822 KIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGL 881

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++         L  +M E    P+ +I +I+++
Sbjct: 882 LKDGNIEDAEALFDEMLECGCEPNCAIYNILLN 914



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 9/209 (4%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNT----LFIGLFEIH-QVERAFKLFDEMQRDGVAADTR 67
           E AL L+   LS   +P VV H T      + L   H +V    ++FD MQR  + A+  
Sbjct: 82  EEALELF---LSVARQPRVV-HTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVG 137

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+      +   G +  +      ++     L+   Y+ LI  L KSG    A++++ ++
Sbjct: 138 TFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAM 197

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +V  V TYS+++         +    L  +ME   V PNV ++   I    +    
Sbjct: 198 AADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRL 257

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +   +L KM+E+   PD    ++++ +L
Sbjct: 258 EEAYRILRKMEEEGCKPDVVTNTVLIQIL 286



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 68/149 (45%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G+  +  TY   I  L K+G+  E++++++ +        ++ YS L+    K   
Sbjct: 162 MKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRD 221

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            E  + L   +    +  +V +Y+I I  L   G++++A+ +   MEE    P+V+T   
Sbjct: 222 AETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTV 281

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           LI         +   ++  KMK  +  PD
Sbjct: 282 LIQILCDAGRLADAKDVFWKMKASDQKPD 310



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 85/197 (43%), Gaps = 4/197 (2%)

Query: 27  IKPDVVIH----NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           ++PD  +     ++L  G+ +    E++ +  + +   G+  D    +  I  LCK+   
Sbjct: 688 LQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEA 747

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
           + + EL +    L   L   +Y+ LI GL     ++IA ELF  + R     D  TY ++
Sbjct: 748 LAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLI 807

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           +  +    +++    +  +M         +T+ T+I G ++     + I L +++  +  
Sbjct: 808 LDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF 867

Query: 203 MPDASIVSIVVDLLAKN 219
            P       ++D L K+
Sbjct: 868 SPTPCTYGPLLDGLLKD 884



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 48  ERAFKLFDEMQRDG-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           E A +LF  + R   V   T +    ++ +  +G + +  ++F  ++    + ++  +  
Sbjct: 82  EEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCT 141

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +   +   G L  A      +    +V +  TY+ +I+ L   G   +A D++  M  + 
Sbjct: 142 VFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADG 201

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V P V T+  L+  F +  +   V+ LL +M+ + V P+    +I + +L +
Sbjct: 202 VVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQ 253


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     +   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + +  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++PDV  ++ L  GL +  +++ A +LFDEM  + 
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNX 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A      M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML   + P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    +  DV TYS++I+GL  + +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 112/214 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GYCK    + AL + +++  KG++PD+  +N+L  G  +   +  A ++   M +DG
Sbjct: 567 FIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDG 626

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y  FI G      + E++ L+  +     +LD   Y+ LIDG  K G +  AL
Sbjct: 627 LLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFAL 686

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +     + D +T++ + HGL  +G +D A  L  +M    + PNV+ +  LI+G+
Sbjct: 687 KLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGY 746

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           +R  +  +   L  +M E+ +MPD +   I+V +
Sbjct: 747 LRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGM 780



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 35/249 (14%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           YC N  ++ A+ LY+EM  KG  P+VV + TL  G       ++A+ L  EM+++GV+ +
Sbjct: 431 YCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCN 490

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLR-----------------ILKCEL--------- 99
             TY   I+GLC  G + E  E+ +                     +K  +         
Sbjct: 491 DYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQ 550

Query: 100 ---------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
                    +I  Y+  IDG CK+   ++AL++ + +    L  D+  Y+ +I G   +G
Sbjct: 551 QMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEG 610

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            M  A  + + M ++ + PN+  + + I G+  +    + + L  KM ++ +  D +  +
Sbjct: 611 NMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYT 670

Query: 211 IVVDLLAKN 219
            ++D  +K+
Sbjct: 671 TLIDGFSKD 679



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           L++GYC  +E+  AL+++ E L  G+ P  V +  L  G  E    E+A++L        
Sbjct: 288 LMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHG 347

Query: 54  ---------------------------FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                      F EM   G+  D  TY I I  LC+   I E++
Sbjct: 348 LLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREAL 406

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L+  +     +  I  Y  L+   C +G ++ A++L+  +P      +VVTY+ ++ G 
Sbjct: 407 NLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGH 466

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N    DKA+ L  +M++N V+ N  T+ TLI+G   +    +V E+L + + +  +P A
Sbjct: 467 INKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTA 526

Query: 207 SIVSIVVD 214
              + +++
Sbjct: 527 MTYNSIIN 534



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           LING C    + G +    EML +    G  P  + +N++  G  +   +  AF ++ +M
Sbjct: 497 LINGLC----VVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              G+  +  TYT FIDG CK      ++++   +R      DI AY+ LI G C+ G +
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNM 612

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             AL++   + +  L+ ++  Y+  I G  N   M++A  L+  M +  +  +  T+ TL
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTL 672

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I GF +    +  ++L  +M  K  +PD    + +   L +N
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRN 714



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 108/220 (49%), Gaps = 4/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K   +  A  +Y +M +KGI P++V + +   G  +    + A K+ ++++  G
Sbjct: 532 IINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
           +  D   Y   I G C+ G +  ++++   + +LK  L  +I  Y+  I G      +E 
Sbjct: 592 LRPDIAAYNSLIFGFCQEGNMSHALQVL--VLMLKDGLLPNISVYNSFITGYKNLKMMEE 649

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL L+  + +  +  D  TY+ +I G   DG +  A  L+ +M      P+ ITF  L H
Sbjct: 650 ALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTH 709

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  R  +     +LL +M   ++ P+  + +++++   +N
Sbjct: 710 GLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRN 749



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 7/230 (3%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ L+ EM +  I+PD  + +     L ++    RA  +  +MQ  G      T+   +D
Sbjct: 196 AVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVD 255

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            L K G + E++ +   L     ++ +   + L+ G C    +  AL++F    R  LV 
Sbjct: 256 VLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVP 315

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
             VTY+++I G   +G  +KA++L   M ++ + P+   F  +I G +        + L 
Sbjct: 316 TDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLF 375

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESNVK 244
            +M +  + PDA   +I++  L +      +L  +      E+++E+ VK
Sbjct: 376 KEMADSGI-PDAFTYNILIHWLCQRRKIREALNLW------EKMNETGVK 418



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 77/193 (39%)

Query: 21  EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
            M ++G+ PD      L            A  L  EM+  G   D   + + +    K G
Sbjct: 132 SMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEG 191

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
              ++V LF  +   + E D +  S  I  LCK      AL +   +     V    T++
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            ++  L   G+M++A  +  ++       +V+   TL+HG+    E  K +++  +    
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 201 NVMPDASIVSIVV 213
            ++P     ++++
Sbjct: 312 GLVPTDVTYTVLI 324


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 111/204 (54%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G  K+K ++ A+NLY +++S+G  P    +  L  GL +   +E A  LFDEM   G
Sbjct: 842  IISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG 901

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               +   Y I ++G    G   +  ELF ++       DI++Y+ +ID LC  GRL   L
Sbjct: 902  CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGL 961

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
              F  L    L  D++TY+++IHGL   G++++A  L+ DME+  +APN+ T+ +LI   
Sbjct: 962  SYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 1021

Query: 182  IRINEPSKVIELLHKMKEKNVMPD 205
             +  + ++  ++  ++  K   P+
Sbjct: 1022 GKAGKAAEAGKMYEELLAKGWKPN 1045



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 106/206 (51%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L++G  K+  IE A  L+ EML  G +P+  I+N L  G       E+  +LF+ M   G
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YT+ ID LC +G + + +  F+ L  +  E D+  Y+ LI GL KSGRLE AL
Sbjct: 937  MNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEAL 996

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             L++ + +  +  ++ TY+ +I  L   G+  +A  ++ ++      PNV T+  LI G+
Sbjct: 997  SLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGY 1056

Query: 182  IRINEPSKVIELLHKMKEKNVMPDAS 207
                 P        +M      P++S
Sbjct: 1057 SVSGSPENAFAAYGRMIVGGCRPNSS 1082



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + IN + K+ E   AL  Y  M SKGI PDVV  N +  GL +  ++  A ++F E++  
Sbjct: 421 LFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAM 480

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TYT+ I    K     E++++F  +   +C  D+ A + LID L K+GR   A
Sbjct: 481 GISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEA 540

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F+ L    L     TY+ ++ GL  +G++ +   L   M  N+  PN+IT+ T++  
Sbjct: 541 WKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDC 600

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  E +  +++L+ M     MPD S  + V+  L K
Sbjct: 601 LCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK 638



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 108/202 (53%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           ++  C+   ++ AL+++ EM  KGI P    +N+L  G  +  +  RA +LF+ M   G 
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             +  T+ +FI+   K+G  +++++ +  ++      D+ A + ++ GL K+GRL +A  
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +FH L    +  D +TY++MI         D+A  +F +M EN  AP+V+   +LI    
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY 532

Query: 183 RINEPSKVIELLHKMKEKNVMP 204
           +    ++  ++ +++KE N+ P
Sbjct: 533 KAGRGNEAWKIFYELKEMNLEP 554



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ++++   K+  IE  L +  EM +KG K   V +NT+  GL +   ++ A  L+ ++  +
Sbjct: 806  LILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE 865

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G +    TY   +DGL K+G I ++  LF  +    CE +   Y+ L++G   +G  E  
Sbjct: 866  GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKV 925

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ELF S+    +  D+ +Y+++I  L  DG+++     F  + +  + P++IT+  LIHG
Sbjct: 926  CELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHG 985

Query: 181  FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +     + + L + M++K + P+    + ++  L K
Sbjct: 986  LGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGK 1023



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 117/229 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  + K ++ E  + L  EM ++G++P+V  +      L +  ++E A+++  +M+ +
Sbjct: 211 VLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEE 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T T+ I  LC  G + ++ ++F  ++    + D   Y  L+D    SG     
Sbjct: 271 GCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSV 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E++++L       +VV+Y+  +  L   G++D+A D+F +M++  + P   ++ +LI G
Sbjct: 331 SEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISG 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           F++ +  ++ +EL + M      P+     + ++   K+  SL +L  +
Sbjct: 391 FLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRY 439



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 112/208 (53%), Gaps = 4/208 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I    K    + A+ +++EM+     PDV+  N+L   L++  +   A+K+F E++  
Sbjct: 491 MMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM 550

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY   + GL + G + E ++L   +       +I  Y+ ++D LCK+G +  A
Sbjct: 551 NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYA 610

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++ +S+     + D+ +Y+ +++GL  +G++D+A  +F  M++  +AP+  T  T++  
Sbjct: 611 LDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKK-VLAPDYATVCTILPS 669

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI 208
           F+R      + E LH ++E  + PD+ +
Sbjct: 670 FVR---SGLMKEALHTVREYILQPDSKV 694



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 114/241 (47%), Gaps = 3/241 (1%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           G  K   +  A  ++ E+ + GI PD + +  +     +    + A K+F EM  +  A 
Sbjct: 460 GLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAP 519

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D       ID L K G   E+ ++F  L+ +  E     Y+ L+ GL + G+++  ++L 
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL 579

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +       +++TY+ ++  L  +G+++ A D+   M  N   P++ ++ T+++G ++ 
Sbjct: 580 EGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKE 639

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH--ERQEEVDESN 242
               +   +  +MK K + PD + V  ++    ++ +   +L +   +  +   +VD S+
Sbjct: 640 GRLDEAFWMFCQMK-KVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSS 698

Query: 243 V 243
           V
Sbjct: 699 V 699



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 96/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K    E ++     + S G+  D +  + +     +  +   A +L  + +  G
Sbjct: 702 LMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLG 761

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+  T +Y   I GL     I  + ELF  ++ L C+ D   Y  ++D + KS R+E  L
Sbjct: 762 VSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDML 821

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +      +  VTY+ +I GL     +D+A +L+  +     +P   T+G L+ G 
Sbjct: 822 KIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGL 881

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++         L  +M E    P+ +I +I+++
Sbjct: 882 LKDGNIEDAEALFDEMLECGCEPNCAIYNILLN 914



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 9/209 (4%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNT----LFIGLFEIH-QVERAFKLFDEMQRDGVAADTR 67
           E AL L+   LS   +P VV H T      + L   H +V    ++FD MQR  + A+  
Sbjct: 82  EEALELF---LSVARQPRVV-HTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVG 137

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+      +   G +  +      ++     L+   Y+ LI  L KSG    A++++ ++
Sbjct: 138 TFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAM 197

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +V  V TYS+++         +    L  +ME   V PNV ++   I    +    
Sbjct: 198 AADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRL 257

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +   +L KM+E+   PD    ++++ +L
Sbjct: 258 EEAYRILRKMEEEGCKPDVVTNTVLIQIL 286



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 68/149 (45%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M+  G+  +  TY   I  L K+G+  E++++++ +        ++ YS L+    K   
Sbjct: 162 MKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRD 221

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            E  + L   +    +  +V +Y+I I  L   G++++A+ +   MEE    P+V+T   
Sbjct: 222 AETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTV 281

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           LI         +   ++  KMK  +  PD
Sbjct: 282 LIQILCDAGRLADAKDVFWKMKASDQKPD 310



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 84/197 (42%), Gaps = 4/197 (2%)

Query: 27  IKPDVVIH----NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           ++PD  +     ++L  G+ +    E++ +  + +   G+  D    +  I   CK+   
Sbjct: 688 LQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEA 747

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
           + + EL +    L   L   +Y+ LI GL     ++IA ELF  + R     D  TY ++
Sbjct: 748 LAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLI 807

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           +  +    +++    +  +M         +T+ T+I G ++     + I L +++  +  
Sbjct: 808 LDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF 867

Query: 203 MPDASIVSIVVDLLAKN 219
            P       ++D L K+
Sbjct: 868 SPTPCTYGPLLDGLLKD 884



 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 48  ERAFKLFDEMQRDG-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           E A +LF  + R   V   T +    ++ +  +G + +  ++F  ++    + ++  +  
Sbjct: 82  EEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCT 141

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +   +   G L  A      +    +V +  TY+ +I+ L   G   +A D++  M  + 
Sbjct: 142 VFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADG 201

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           V P V T+  L+  F +  +   V+ LL +M+ + V P+    +I + +L +
Sbjct: 202 VVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQ 253


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G      +  A   + EMLSKG++PD   +NT       +  + RA +L + +  +
Sbjct: 420 ILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLE 479

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+++DT TY I I GLCK G + ++ EL   +     + D   Y+CLI   C+ G L  A
Sbjct: 480 GISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREA 539

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F+++    L+   VT++++IH     G +  A+  F  M E  V PN IT+  LIH 
Sbjct: 540 RKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 599

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R+          H+M E+ ++ +    ++++D
Sbjct: 600 LCRMGRTQLASHHFHEMLERGLVANKYTYTLLID 633



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 2/237 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I+GYC+  ++E A  L  EM  +G  P+V  +  L  G   +  +  A + FDEM   
Sbjct: 385 IRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSK 444

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I      G I  ++EL   L +     D   Y+ LI GLCK+G L+ A
Sbjct: 445 GLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDA 504

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L  D +TY+ +IH     G + +A  +F +M  + + P+ +TF  +IH 
Sbjct: 505 KELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHA 564

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
           + R            KM E+ V P+    ++++  L +  +    L S   HE  E 
Sbjct: 565 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCR--MGRTQLASHHFHEMLER 619



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 92/181 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G CK   ++ A  L  +M+S G++PD + +  L     E   +  A K+F+ M  D
Sbjct: 490 ILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISD 549

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T+T+ I   C+ G +  +   FR +     E +   Y+ LI  LC+ GR ++A
Sbjct: 550 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 609

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              FH +    LVA+  TY+++I G    G  + A   + +M +N + P+ +T   L+ G
Sbjct: 610 SHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKG 669

Query: 181 F 181
           F
Sbjct: 670 F 670



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I G  +  ++E A  L   M LSK  K     +N L  GL     V++ + L  EM+ 
Sbjct: 246 VVITGLTRKGDLEEAAELVEGMRLSK--KASSFTYNPLITGLLARGCVKKVYDLQLEMEN 303

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G+     TY   I GL ++G +  +   F  +R +    D+  Y+ L++G CK+G L+ 
Sbjct: 304 EGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKE 363

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL LF  L R  L   V+TY+I I G    G +++A  L  +M E    PNV T+  L+ 
Sbjct: 364 ALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMK 423

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
           G + +   +   E   +M  K + PD
Sbjct: 424 GSLNVCSLAMAREFFDEMLSKGLQPD 449



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGYCK   ++ AL L+ ++   G+ P V+ +N    G   +  +E A  L +EM   G
Sbjct: 351 LLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQG 410

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYTI + G      +  + E F  +     + D  AY+  I      G +  AL
Sbjct: 411 CLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAL 470

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   L    + +D VTY+I+IHGL   G +  A +L + M  N + P+ IT+  LIH  
Sbjct: 471 ELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAH 530

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                  +  ++ + M    ++P A   ++++
Sbjct: 531 CERGLLREARKIFNNMISDGLLPSAVTFTVII 562



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G      ++   +L  EM ++GI P VV +N +  GL +   VE A   F EM+  G
Sbjct: 281 LITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMG 340

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   ++G CK G + E++ LF  LR       +  Y+  IDG C+ G LE A 
Sbjct: 341 LLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEAR 400

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     + +V TY+I++ G  N   +  A + F +M    + P+   + T I   
Sbjct: 401 ILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAE 460

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + + + ++ +EL   +  + +  D    +I++  L K 
Sbjct: 461 LILGDIARALELREVLMLEGISSDTVTYNILIHGLCKT 498



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 3/199 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA--DTRTYTIFIDG 75
           ++ EML  GI+P +V +NTL     +  + ++   L  EM+  G     +  TY + I G
Sbjct: 191 VHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITG 250

Query: 76  LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           L + G + E+ EL   +R+ K +     Y+ LI GL   G ++   +L   +    ++  
Sbjct: 251 LTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPT 309

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           VVTY+ MIHGL   G ++ A   F +M    + P+VIT+ +L++G+ +     + + L  
Sbjct: 310 VVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFG 369

Query: 196 KMKEKNVMPDASIVSIVVD 214
            ++   + P     +I +D
Sbjct: 370 DLRRAGLAPTVLTYNIRID 388



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 16  LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
           L+ + EM S G+ PDV   N +   L +  + +    + +EM + G+     TY   +D 
Sbjct: 154 LSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDS 213

Query: 76  LCKNGYIVESVELFRTL--RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
             K G   +   L + +  R   C  +   Y+ +I GL + G LE A EL   + R    
Sbjct: 214 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGM-RLSKK 272

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
           A   TY+ +I GL   G + K +DL L+ME   + P V+T+  +IHG ++          
Sbjct: 273 ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVK 332

Query: 194 LHKMKEKNVMPD 205
             +M+   ++PD
Sbjct: 333 FAEMRAMGLLPD 344



 Score = 36.6 bits (83), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA--PNVITFGTLIHGFIRINEPSKVIE 192
            +VTY+ ++     +G+ DK   L  +ME       PN +T+  +I G  R  +  +  E
Sbjct: 203 SIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAE 262

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L+  M+        +   ++  LLA+ 
Sbjct: 263 LVEGMRLSKKASSFTYNPLITGLLARG 289


>gi|326487712|dbj|BAK05528.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 455

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM---LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           ILI  Y KN + E A  +  EM       ++P++V ++TL  GL    +++ AF+LF+ M
Sbjct: 205 ILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEAFELFEGM 264

Query: 58  -QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
            ++D +  D  TY + IDG C+ G + ++  +F  +R  +CE +   Y+ LI+G CK G 
Sbjct: 265 IEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLINGHCKKGD 324

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +E A  +F  +    +  D V+Y+ +I  L   G +D+  DL ++M E     +V+T+  
Sbjct: 325 VENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKADVVTYNL 384

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L+ G  +    ++V++LL ++ E+ V  + +   IV++ L  +
Sbjct: 385 LLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSS 427



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 88/155 (56%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+C+  ++E A  ++  M     +P+   + TL  G  +   VE A  +F+EM+  
Sbjct: 279 VIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSA 338

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +YT  I  LC++G + E ++L   +R   C+ D+  Y+ L++GLCK GR+   
Sbjct: 339 GVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEV 398

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           ++L   LP   +  +V +Y I+++ L + G M+KA
Sbjct: 399 MDLLGRLPEEGVQLNVASYRIVMNTLCSSGDMEKA 433



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 1/191 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C+  +++ A  L+  M+ K  I PD + +N +  G   + QVE+A  +F  M+++
Sbjct: 244 LLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKN 303

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   Y   I+G CK G +  +  +F  +R    E D  +Y+ LI  LC+ G ++  
Sbjct: 304 ECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEG 363

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +      ADVVTY++++ GL  DG+M +  DL   + E  V  NV ++  +++ 
Sbjct: 364 IDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNT 423

Query: 181 FIRINEPSKVI 191
                +  K +
Sbjct: 424 LCSSGDMEKAV 434


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 115/219 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK  ++E A +++ EM+ KG KPD++ +++L  GL +  +V+ A KL D M   
Sbjct: 203 VLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVAR 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G       YT  + GLCK G I E+V+  + +R  +    +  YS ++ G    G++E A
Sbjct: 263 GPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKA 322

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D ++Y++ I  LY+ G+ ++A  +F  M E    P++ T+G +I  
Sbjct: 323 FAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDN 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +    +    +L  M +  V P+  I ++++D   K+
Sbjct: 383 FCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKS 421



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 37/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ GY    ++E A  +  EM  +   PD + +      L+ I + E A K+F+ M   G
Sbjct: 309 IVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG 368

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ID  CK G +  +  + R +     + +   Y+ ++DG  KS RLE AL
Sbjct: 369 CKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEAL 428

Query: 122 ELFHS------LPRGV-------------------------------LVADVVTYSIMIH 144
           EL+        LP  V                               L   +VTYS++IH
Sbjct: 429 ELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIH 488

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL   G  ++A DL  +M +N V P+  T+ +LI       + S+ +ELL +M +  + P
Sbjct: 489 GLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFP 548

Query: 205 DASIVSIVVDLLAKNEI 221
           D      +V +L ++++
Sbjct: 549 DDHTYGTLVQILCRSDV 565



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G CK   I+ A+    EM  + ++P V  ++ +  G   + +VE+AF + +EM    
Sbjct: 274 IVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRD 333

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG------ 115
            A DT +YT+FI+ L   G   E+ ++F T+    C+ D+  Y  +ID  CK G      
Sbjct: 334 CAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAAT 393

Query: 116 -----------------------------RLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                        RLE ALEL+  + +  ++   VTY+ +I+ L
Sbjct: 394 HVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINAL 453

Query: 147 YNDGQMDKAHDLFLDMEENA--VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
               +MD+A +L  +M+     + P+++T+  +IHG  ++    +  +LL +M +  V+P
Sbjct: 454 CKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIP 513

Query: 205 DASIVSIVVDLLA 217
           D    + ++  LA
Sbjct: 514 DCFTYTSLIQTLA 526



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 3/207 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ +CK   +  A ++   M    +KP+  I+  +  G  +  ++E A +L+  + +D
Sbjct: 378 IIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKD 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD--IQAYSCLIDGLCKSGRLE 118
           G+   T TY   I+ LCK   + E++EL R ++  K EL+  I  YS +I GL K G  E
Sbjct: 438 GILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 497

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L   +    ++ D  TY+ +I  L   G++ +A +L  +M +  + P+  T+GTL+
Sbjct: 498 RAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLV 557

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
               R ++     +LL +M      P+
Sbjct: 558 QILCR-SDVDAAWDLLQEMMRNGHTPN 583



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 104/216 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+    + E    L  EM S+GI  +   H  +   L     +++A   F+ +  +
Sbjct: 133 ILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPN 192

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  TYT+ +DGLCK   +  + ++F  +     + DI AYS LIDGL K+GR++ A
Sbjct: 193 KCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEA 252

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +         V Y+ ++ GL   G++ +A     +M    + P V T+  ++ G
Sbjct: 253 RKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTG 312

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +I + +  K   ++ +M +++  PD    ++ ++ L
Sbjct: 313 YIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEAL 348



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +   +  AL  +   +S+   P+V   N L  G       E    L  EM+  G+ ++  
Sbjct: 108 RGGHLSDALGFFQSSISE---PNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGA 164

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T+ + +  LC    + ++V  F ++   KCE  +  Y+ L+DGLCK+ ++E A ++F  +
Sbjct: 165 THGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEM 224

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RI 184
            R     D++ YS +I GL   G++D+A  L   M      P  + + +++ G     RI
Sbjct: 225 IRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRI 284

Query: 185 NEPSKVIE 192
            E  K I+
Sbjct: 285 QEAVKTIQ 292



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 3/183 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR- 59
           ++++G+ K+  +E AL LY  +L  GI P  V +NT+   L ++ +++ A +L  EMQR 
Sbjct: 413 MIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRR 472

Query: 60  -DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
            + +     TY++ I GL K G    + +L   +       D   Y+ LI  L  +G++ 
Sbjct: 473 KEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVS 532

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+EL   + +  +  D  TY  ++  L     +D A DL  +M  N   PN  TF  + 
Sbjct: 533 RAMELLEEMLKAGIFPDDHTYGTLVQILCRS-DVDAAWDLLQEMMRNGHTPNEFTFKAVE 591

Query: 179 HGF 181
            GF
Sbjct: 592 KGF 594


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 110/212 (51%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CK      AL ++ EML  G++ DV + NTL      +  + +A +L   M       D 
Sbjct: 58  CKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDV 117

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TY+  +D L K G   +++E+F  ++   C  D   Y+ LI  L K G+++ ALEL   
Sbjct: 118 FTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLED 177

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           + R  ++ D  TY+I+I  L + G+ +KA+  F  M+    +P+V+T+ TL++G  ++  
Sbjct: 178 MNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRR 237

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +L  +M+    MPD +    ++D LAK
Sbjct: 238 TDEACDLFDEMQANKCMPDLTTFGTLIDTLAK 269



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+   K  +++ AL L  +M  KGI PD   +N +   L    + E+A+  F  M+R 
Sbjct: 157 VLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRR 216

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + D  TY   ++GL K     E+ +LF  ++  KC  D+  +  LID L K+GR+E A
Sbjct: 217 KHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDA 276

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE    L +   V +   Y+ +I G    GQ+DK ++LF DM E +  P+ IT+  L+ G
Sbjct: 277 LEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLG 336

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           F R    S  +ELL +M  +   P  +  ++++  L+
Sbjct: 337 FSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLS 373



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E A + +  M  +   PDVV +NTL  GL ++ + + A  LFDEMQ +    D  T+   
Sbjct: 204 EKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTL 263

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           ID L K G + +++E    L  +    +   Y+ LI G C+SG+++   ELF  +     
Sbjct: 264 IDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSC 323

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             D +TY+I++ G    G    A +L  +M      P + T+  LI       +      
Sbjct: 324 FPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYT 383

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           L  +M  K   PD    S + +L   N+
Sbjct: 384 LFKEMIAKGFNPDMQTYSALPNLSTPNK 411



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 104/218 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  C+   +  A  L   M +     DV  ++ L   L +  +  +A ++F  MQ+ G
Sbjct: 88  LIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAG 147

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT  Y + I  L K G + E++EL   +       D + Y+ +ID L   GR E A 
Sbjct: 148 CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAY 207

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + R     DVVTY+ +++GL    + D+A DLF +M+ N   P++ TFGTLI   
Sbjct: 208 SFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTL 267

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +       +E   ++ +   +P++ I + ++    ++
Sbjct: 268 AKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRS 305



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 1/190 (0%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADTRTYTIFIDGLCKNGYIVESVE 87
           PDVV +NTL  G  +    +RA  +F  ++++G    +  ++   +  LCK     +++ 
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           +F+ +     + D+   + LI   C+ G L  A  L H +     V DV TYS ++  L 
Sbjct: 69  VFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALG 128

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G+  KA ++F +M++    P+ + +  LI    +  +  + +ELL  M  K +MPD  
Sbjct: 129 KAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCR 188

Query: 208 IVSIVVDLLA 217
             +IV+D+L+
Sbjct: 189 TYNIVIDVLS 198



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 4/190 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG  K +  + A +L+ EM +    PD+    TL   L +  ++E A +    + + G
Sbjct: 228 LLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMG 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++  Y   I G C++G + +  ELF+ +    C  D   Y+ L+ G  + G   +A+
Sbjct: 288 HVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAM 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + R      + TY+++I  L   GQ++ A+ LF +M      P++ T+  L +  
Sbjct: 348 ELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPN-- 405

Query: 182 IRINEPSKVI 191
             ++ P+K +
Sbjct: 406 --LSTPNKSV 413



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 36/159 (22%)

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSL-------PRGV------------------ 131
           C  D+ AY+ LI G CK+G  + AL++F  L       P  V                  
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 66

Query: 132 -----------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                      L ADV   + +IH     G + +A  L   M  +A   +V T+  L+  
Sbjct: 67  LAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDA 126

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +    +K +E+   M++   MPD  + ++++  L K 
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQ 165



 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+ +      A+ L  EM+ +G  P +  +N L   L    QVE A+ LF EM   
Sbjct: 332 ILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 391

Query: 61  GVAADTRTYT 70
           G   D +TY+
Sbjct: 392 GFNPDMQTYS 401


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 112/217 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  C+   +  A+++  +M   G  P+ + +N L  G  +  ++ERA +   +M   
Sbjct: 194 ILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSR 253

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   +  LCK+G +  +VEL   L    C   +  Y+ +IDGL K G+ + A
Sbjct: 254 GCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQA 313

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L  D++TYS ++ GL  +G++D+A   F D+E   V PN IT+  ++ G
Sbjct: 314 AKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLG 373

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  +  + I+ L  M ++   P  +  +I+++ LA
Sbjct: 374 LCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLA 410



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK  +   A  +   +   G  PDV+ +N L  G+    +   A KL  +M R G
Sbjct: 125 LIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRG 184

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    T+ I I+ LC+ G +  ++++   +    C  +  +Y+ L+ G CK  ++E A+
Sbjct: 185 CSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAI 244

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +       D+VTY+ ++  L  DG++D A +L   +     +P +IT+ T+I G 
Sbjct: 245 EYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 304

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++ +  +  +LL +M+ K + PD    S +V  L++
Sbjct: 305 SKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSR 341



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 112/214 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK K++E A+    +M S+G  PD+V +NTL   L +  +V+ A +L +++   G
Sbjct: 230 LLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKG 289

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   IDGL K G   ++ +L   +R    + DI  YS L+ GL + G+++ A+
Sbjct: 290 CSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAI 349

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + FH L    +  + +TY+ ++ GL    + D+A D    M +    P   ++  LI G 
Sbjct: 350 KFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGL 409

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
                  + +ELL+++  + V+  +S   + V +
Sbjct: 410 AYEGLAKEALELLNELCLRGVVKKSSAEKVAVRM 443



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 102/206 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G C       A  L ++M+ +G  P VV  N L   L     + RA  + ++M + 
Sbjct: 159 VLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKH 218

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ +Y   + G CK   +  ++E    +    C  DI  Y+ L+  LCK G+++ A
Sbjct: 219 GCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAA 278

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL + L        ++TY+ +I GL   G+ D+A  L  +M    + P++IT+ +L+ G
Sbjct: 279 VELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGG 338

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R  +  + I+  H ++   V P+A
Sbjct: 339 LSREGKVDEAIKFFHDLEVLGVKPNA 364



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 105/211 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +N E+E        M+ +G  PD++   +L  G  +I +  +A ++ + ++  G   D  
Sbjct: 96  RNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVI 155

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + I G+C  G  +++ +L   +    C   +  ++ LI+ LC+ G L  A+++   +
Sbjct: 156 TYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKM 215

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
           P+     + ++Y+ ++HG   + +M++A +    M      P+++T+ TL+    +  + 
Sbjct: 216 PKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKV 275

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +ELL+++  K   P     + V+D L+K
Sbjct: 276 DAAVELLNQLSSKGCSPVLITYNTVIDGLSK 306



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           ++E  F+  + M   G   D    T  I G CK G   ++  +   +       D+  Y+
Sbjct: 99  ELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYN 158

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI G+C +GR   A +L   + R      VVT++I+I+ L   G + +A D+   M ++
Sbjct: 159 VLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKH 218

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              PN +++  L+HGF +  +  + IE L KM  +   PD    + ++  L K+
Sbjct: 219 GCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKD 272



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 47/108 (43%)

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L ++G LE       S+     + D++  + +I G    G+  KA  +   +E++   P+
Sbjct: 94  LVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD 153

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           VIT+  LI G           +LL  M  +   P     +I+++ L +
Sbjct: 154 VITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCR 201


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 116/215 (53%), Gaps = 3/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +++ A  L  +M+    +PD + +N +  G F  H  + AF+L  EM+  G
Sbjct: 368 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAG 427

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+I I GLC++G   ++ +L   +     + +   Y+ LI G C+ G + +A 
Sbjct: 428 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLAC 487

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  ++ D+  Y+ +I GL   G+++++   F  M+E  + PN  T+  LIHG+
Sbjct: 488 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 547

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           ++  +     +L+ +M +  + P+     I +DLL
Sbjct: 548 LKNGDLESAEQLVQRMLDTGLKPND---VIYIDLL 579



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 102/214 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C++  +E A     +M   G+ PD   +  L  GL +  +   A  L DEM   
Sbjct: 262 VLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA 321

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y   IDG  + G   E+ ++ + +     + +   Y  L+ GLCK G+++ A
Sbjct: 322 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 381

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R     D +TY+++I G +       A  L  +ME   ++PNV T+  +IHG
Sbjct: 382 SLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHG 441

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             +  EP K  +LL +M  K + P+A + + ++ 
Sbjct: 442 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 475



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 110/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+ ++   + A  L SEM + GI P+V  ++ +  GL +  + E+A  L +EM   
Sbjct: 402 LIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 461

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   I G C+ G +  + E+F  +  +    D+  Y+ LI GL K GR+E +
Sbjct: 462 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 521

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +    L+ +  TYS +IHG   +G ++ A  L   M +  + PN + +  L+  
Sbjct: 522 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 581

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + + ++  KV      M ++ VM D  I  I++  L+ +
Sbjct: 582 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSS 620



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+    +  +E A  + S +   G  PDV ++++L  GL +    E+AF + DEM + 
Sbjct: 612 ILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKK 671

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   Y   IDGLCK+G I  +  +F ++       +   Y+ LIDG CK G +  A
Sbjct: 672 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 731

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L++ +    +  D   YS++  G  + G +++A  L  +M     A ++ +F  L+ G
Sbjct: 732 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDG 790

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  + ++LLH +  + ++P+A  +  ++  L++
Sbjct: 791 FCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 828



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+   +  A  ++ +M    + PD+  +N+L  GL ++ +VE + K F +MQ  G
Sbjct: 473 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 532

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I G  KNG +  + +L + +     + +   Y  L++   KS  +E   
Sbjct: 533 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 592

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             F S L +GV++ D   Y I+IH L + G M+ A  +   +E+N   P+V  + +LI G
Sbjct: 593 STFKSMLDQGVML-DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 651

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  K   +L +M +K V P+    + ++D L K+
Sbjct: 652 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 690



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +    + A  +  EM++ G++P+ + ++ L  GL ++ Q++RA  L  +M RD 
Sbjct: 333 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 392

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY + I+G  ++    ++  L   +       ++  YS +I GLC+SG  E A 
Sbjct: 393 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 452

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +   Y+ +I G   +G +  A ++F  M +  V P++  + +LI G 
Sbjct: 453 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 512

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  +   +M+E+ ++P+    S ++    KN
Sbjct: 513 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 550



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 97/181 (53%), Gaps = 1/181 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ +I  A N+++ +L+KG+ P+ V + +L  G  ++  +  AF L++EM   G
Sbjct: 683 LIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATG 742

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y++   G    G + +++ L   +  L+    I +++ L+DG CK G+++  L
Sbjct: 743 ITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM-FLRGHASISSFNNLVDGFCKRGKMQETL 801

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H +    LV + +T   +I GL   G++ + H +F+++++         F +L    
Sbjct: 802 KLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDM 861

Query: 182 I 182
           I
Sbjct: 862 I 862



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 4/225 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  + E A  +  EM  KG+ P++V +N L  GL +   +  A  +F+ +   G
Sbjct: 648 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 707

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  IDG CK G I  +  L+  +       D   YS L  G   +G LE A+
Sbjct: 708 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 767

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   +  RG   A + +++ ++ G    G+M +   L   +    + PN +T   +I G
Sbjct: 768 FLIEEMFLRGH--ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISG 825

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS-IVSIVVDLLAKNEISLN 224
                + S+V  +  ++++K     A    S+ +D++ + +I L+
Sbjct: 826 LSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLD 870



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           H +      ++ + + A K+  EM+  G   +T TY + I GLC++G + E+    + + 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
                 D   Y  LI+GLCKS R   A  L   +    L  +VV Y+ +I G   +G  D
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +A  +  +M    V PN IT+  L+ G  ++ +  +   LL +M   +  PD    ++++
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 214 D 214
           +
Sbjct: 405 E 405



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  +++  L L   ++ +G+ P+ +    +  GL E  ++     +F E+Q+  
Sbjct: 787 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 846

Query: 62  VAADTRTYT-IFIDGL-----------------CKNGYIVESVELFRTLRILKCELDIQA 103
             +  R ++ +F+D +                 CK G + +++ L   +      +   +
Sbjct: 847 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 906

Query: 104 YSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVT 138
           Y  ++D LC+ G+L  AL L   +  RG L   +V 
Sbjct: 907 YLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA 942


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 110/216 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY K+  I+  L L+ EML K +KP  V ++ +  GLF   +   A K+F EM   G
Sbjct: 629 LINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESG 688

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A    TYTI + GLC+N    E++ LF  L  +  + +I   + +I  L K  R E A 
Sbjct: 689 TAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAH 748

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF S+    LV +  TY +MI  L  +G +++A  +F  ME+   AP+      +I   
Sbjct: 749 DLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRML 808

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           ++  E  K    + K+    +  +AS  S+++ L A
Sbjct: 809 LQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFA 844



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A  +   M+S G +PDVV ++TL  G F+  +++    LF EM    
Sbjct: 594 LIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKR 653

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V   T TY++ +DGL + G    + ++F  +      + I  Y+ ++ GLC++   + A+
Sbjct: 654 VKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAI 713

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFH L    L  ++   + MIH LY   + ++AHDLF  +  + + PN  T+G +I   
Sbjct: 714 TLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINL 773

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEI 221
           ++     +   +   M++    P + +++ I+  LL K EI
Sbjct: 774 LKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEI 814



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 107/207 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK + ++ A  +  +M    I+PD V +  +  G   + + + A K+F EM R+G
Sbjct: 313 IVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREG 372

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T+   +D LCK+    E+ E+F ++     + DI +YS L+ G    GR     
Sbjct: 373 LIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMN 432

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LFHS+    +VAD   ++I+I+     G MD+A  +F +M    V+PNV+T+ T+I   
Sbjct: 433 NLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASI 208
            R+   +  +E L +M    + P+  +
Sbjct: 493 CRMGRLADAMEKLSQMISIGLKPNTVV 519



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 1/229 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C+   +  A+   S+M+S G+KP+ V++++L  G      + +A +L  EM   G
Sbjct: 488 VIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG 547

Query: 62  VAADTRTY-TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +     T+ +  I  LC  G ++ + ++F  +  +    DI  ++ LIDG C  G+++ A
Sbjct: 548 IPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKA 607

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +  ++       DVVTYS +I+G +  G++D    LF +M    V P  +T+  ++ G
Sbjct: 608 FGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDG 667

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             R    S   ++ H+M E       S  +I++  L +N  +  ++  F
Sbjct: 668 LFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLF 716



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI G+C + ++  A  L SEM+ +GI +P++   +++   L    +V  A  +F+ +   
Sbjct: 523 LIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHI 582

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+   IDG C  G + ++  +   +     E D+  YS LI+G  KSGR++  
Sbjct: 583 GDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDG 642

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    VTYS+++ GL+  G+   A  +F +M E+  A ++ T+  ++ G
Sbjct: 643 LILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQG 702

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N   + I L HK+   N+  + +I++ ++  L K
Sbjct: 703 LCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYK 740



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 110/221 (49%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C    +  A ++++ ++  G +PD+   N+L  G   + ++++AF + D M   G
Sbjct: 559 IIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+  I+G  K+G I + + LFR +   + +     YS ++DGL ++GR   A 
Sbjct: 619 TEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAK 678

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++FH +        + TY+I++ GL  +   D+A  LF  +    +   +    T+IH  
Sbjct: 679 KMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHAL 738

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSI-VVDLLAKNEI 221
            ++    +  +L   +    ++P+AS   + +++LL +  +
Sbjct: 739 YKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSV 779



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 110/230 (47%), Gaps = 1/230 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I   C     + AL++   M    G  PDVV +  +  GLF   ++ +A  LF+EM + 
Sbjct: 242 VIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQK 301

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  TY   +  LCK   + ++  + R +     + D   Y+ +I G    GR + A
Sbjct: 302 GVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEA 361

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  + R  L+ D+VT++ ++  L    +  +A ++F  +      P++I++  L+HG
Sbjct: 362 AKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHG 421

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           +        +  L H M +  ++ D+   +I+++  AK  +   +L  FT
Sbjct: 422 YATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFT 471



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++GY          NL+  M   GI  D    N L     +   ++ A  +F EM+  
Sbjct: 417 ILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQ 476

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY   I  LC+ G + +++E    +  +  + +   Y  LI G C  G L  A
Sbjct: 477 GVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKA 536

Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            EL    + +G+   ++  +S +IH L N+G++  A D+F  +      P++ TF +LI 
Sbjct: 537 KELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLID 596

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G+  + +  K   +L  M      PD    S +++
Sbjct: 597 GYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLIN 631



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGL 111
            F  + R G+  D      F+  LC      E++  L   +  L C  D  +Y+ +I  L
Sbjct: 187 FFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSL 246

Query: 112 CKSGRLEIALELFHSLPRG-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           C   R + AL++   + +G     DVV+Y+++IHGL+ +G++ KA +LF +M +  V PN
Sbjct: 247 CGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPN 306

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           V+T+ +++H   +     K   +L +M + ++ PD
Sbjct: 307 VVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPD 341



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 1/231 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY      + A  ++ EM  +G+ PD+V  N+L   L +  + + A ++F  +   G
Sbjct: 348 MIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKG 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y+I + G    G  V+   LF ++       D   ++ LI+   K G ++ AL
Sbjct: 408 HKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEAL 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    +  +VVTY+ +I  L   G++  A +    M    + PN + + +LI GF
Sbjct: 468 LIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGF 527

Query: 182 IRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAKNEISLNSLPSFTV 231
               +  K  EL+ +M ++ +  P+ +  S ++  L      +N+   F +
Sbjct: 528 CTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNL 578



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 72/151 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C+N   + A+ L+ ++ +  +K ++ I NT+   L+++ + E A  LF  +   
Sbjct: 698 IILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSAS 757

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY + I  L K G + E+  +F ++    C    +  + +I  L + G +  A
Sbjct: 758 GLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKA 817

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
                 +   ++  +  T S++I    + G+
Sbjct: 818 GYYMSKVDGTIISLEASTTSLLISLFASKGR 848



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 84/224 (37%), Gaps = 53/224 (23%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE-------SVELFRTLRILKCE 98
             E A  LFDE+ R       R    F+  L +    V        +V LF   RI + E
Sbjct: 98  STEDAHHLFDELLRQDTPVHGRALNGFLAALARARDSVACSDAPALAVALFN--RICREE 155

Query: 99  -------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL------------------- 132
                  L +  Y  L+D  C++ R ++    F  L R  L                   
Sbjct: 156 AGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKR 215

Query: 133 -----------------VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE-NAVAPNVITF 174
                            V D  +Y+ +I  L    +  +A D+ L M + +  +P+V+++
Sbjct: 216 TDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSY 275

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +IHG     E SK   L ++M +K V+P+    + +V  L K
Sbjct: 276 TMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCK 319


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +CK+ +I  A +++  +   G++P VV +NTL  G   +  ++  F+L   M   
Sbjct: 147 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++ ELF  + +     +   ++ LI G CK+GR+++A
Sbjct: 207 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L+ D++TY+ +I+GL   G + +AH L  +M    + P+  T+ TLI G
Sbjct: 267 MEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     +   +M + N+  D    + ++  L +   S+++
Sbjct: 327 CCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDA 371



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 99/179 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CKN  ++ A+ +Y  MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 253 LIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + +  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++   +    L  D+ TY+++I+     G + K   L  +M+ N   P+V+T+  L++G
Sbjct: 373 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++  M   
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQ 276

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I GLCK G + ++  L   + +   + D   Y+ LIDG CK G L+ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 336

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    + +G +  D V Y+ +I GL  +G+   A  +  +M    + P++ T+  +I+ 
Sbjct: 337 FKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINE 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +  +  K  +LL +M+    +P     +++++
Sbjct: 397 FCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMN 430



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY +  +++    L S ML+ G++PDV  ++ L  GL +  +++ A +LFDEM   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  I G CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 243 LIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D  TY+ +I G   +G +D A      M +  +  + + +  LI G 
Sbjct: 303 XLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + PD    +++++   K 
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 400



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 49  RAFKL----FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           R FKL    ++E+   G  A    + I +   CK+G I  +  +F  +        + +Y
Sbjct: 121 RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + L++G  + G L+    L  ++    +  DV TYS++I+GL  + +MD A++LF +M  
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLV 240

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + PN +TF TLI G  +       +E+   M  ++++PD
Sbjct: 241 KGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPD 281



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 74/155 (47%)

Query: 64  ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123
           +D   ++  I    ++G++ +++E +R  R  K  +       +++ L K    ++    
Sbjct: 70  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGF 129

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
           +  +      A +  ++I++H    DG +  A  +F  + +  + P+V+++ TL++G+IR
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +   L   M    V PD    S++++ L K
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQAY--SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           IL+C      Y  + L+   CK G + +A  +F ++ +  L   VV+Y+ +++G    G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           +D+   L   M  + V P+V T+  LI+G  + ++     EL  +M  K ++P+    + 
Sbjct: 193 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 252

Query: 212 VVDLLAKN 219
           ++    KN
Sbjct: 253 LIXGHCKN 260


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 10/233 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+    +++ AL+    M   G  P V+ +N L  GL   HQVERA  + D+M   G
Sbjct: 539 IIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAG 598

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  TYTI + G   +G I ++ E F  ++    +LD+  Y  L+   CKSGR++ AL
Sbjct: 599 IAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSAL 658

Query: 122 EL-----FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            +     F  +PR   +     Y+I+I G    G + +A DL   M+E+ + PN+ TF +
Sbjct: 659 AVTREMSFQKIPRNTFI-----YNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTS 713

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            I+   +  +  +   ++ +M +  + P+    + ++   AK  +   +L  F
Sbjct: 714 YINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCF 766



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 112/240 (46%), Gaps = 11/240 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  ++  AL +  EM S GIK +   ++ L  G   +H    AF +F++M + G
Sbjct: 434 LINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSG 493

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y + ++  CK G +  ++ +F  ++  + +   + +  +I+G   +G ++ AL
Sbjct: 494 LQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRAL 553

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    + R      V+TY+ +IHGL    Q+++A  +   M    +APN  T+  ++ G+
Sbjct: 554 DTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGY 613

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-----------EISLNSLPSFT 230
               +  K  E   K+KE  +  D  I   ++    K+           E+S   +P  T
Sbjct: 614 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 673



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 109/219 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+    +   A +++ +M+  G++PD  I+N L     ++  ++RA ++F+ M+++
Sbjct: 468 MLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKE 527

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +    RT+   I+G    G +  +++    +R   C   +  Y+ LI GL +  ++E A
Sbjct: 528 RMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERA 587

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   +    +  +  TY+I++ G    G + KA + F  ++E+ +  +V  + TL+  
Sbjct: 588 VSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 647

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +       + +  +M  + +  +  I +I++D  A+ 
Sbjct: 648 CCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARR 686



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 102/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++GY   ++ +  L ++  +   G +P ++ +  L     +I +V +A  +  EM+  G
Sbjct: 399 MMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHG 458

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  + +TY++ I+G         +  +F  +     + D   Y+ L++  CK G ++ A+
Sbjct: 459 IKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAI 518

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  +     T+  +I G    G M +A D    M  +  AP V+T+  LIHG 
Sbjct: 519 RIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGL 578

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           IR ++  + + +L KM    + P+    +I++
Sbjct: 579 IRKHQVERAVSVLDKMSIAGIAPNEHTYTIIM 610



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ GY  + +I  A   ++++   G+K DV I+ TL     +  +++ A  +  EM   
Sbjct: 608 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 667

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +T  Y I IDG  + G + E+ +L + ++      +I  ++  I+  CK+G ++  
Sbjct: 668 KIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQ-- 725

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                                            +A ++  +M +  + PNV TF TLI G
Sbjct: 726 ---------------------------------RAENVIQEMADVGLKPNVKTFTTLIKG 752

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
           + +++ P + ++   +MK   + PD A+   +V  LL++  +
Sbjct: 753 WAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATV 794



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ Y   +++ GAL+   EM S+G++  VV ++ L  G  + +  E A KLF E +   
Sbjct: 294 LVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKL 353

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y+  I   C++G +  + EL R +     +  I  Y  ++ G   +   +  L
Sbjct: 354 DNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCL 413

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L        +++Y  +I+     G++ KA  +  +ME + +  N  T+  LI+GF
Sbjct: 414 IVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGF 473

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I +++ +    +   M +  + PD +I +++V+   K
Sbjct: 474 IHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCK 510



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 96/209 (45%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           Y K  +   A   +  M ++GI+P+  +  +L         +  A    +EM+ +G+   
Sbjct: 263 YAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMT 322

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             TY+I I G  K      + +LF+  +     L+   YS +I   C+SG ++ A EL  
Sbjct: 323 VVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVR 382

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    + A +  Y  M+HG        K   +F  ++E    P++I++G LI+ +++I 
Sbjct: 383 EMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIG 442

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +  K + +  +M+   +  +    S++++
Sbjct: 443 KVPKALAVSKEMESHGIKHNNKTYSMLIN 471



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           IN  CK  +++ A N+  EM   G+KP+V    TL  G  ++   +RA K F+EM+  G+
Sbjct: 715 INACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGL 774

Query: 63  AADTRTYTIFIDGLCKNGYIVE 84
             D   Y   +  L     ++E
Sbjct: 775 KPDEAAYHCLVTSLLSRATVME 796



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ +  ++  A +L  +M   GI P++    +      +   ++RA  +  EM   
Sbjct: 678 ILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADV 737

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI----------DG 110
           G+  + +T+T  I G  K      +++ F  ++    + D  AY CL+          +G
Sbjct: 738 GLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEG 797

Query: 111 LCKSGRLEIALELFHS 126
              +G L +  E+F +
Sbjct: 798 STYTGILSVCREMFEN 813



 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 35/187 (18%)

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           R + + +    K G    +   F  +R    E +   ++ L+     +  +  AL     
Sbjct: 254 REFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEE 313

Query: 127 LPRGVLVADVVTYSIMI--HGLYND---------------------------------GQ 151
           +    L   VVTYSI+I  +G  ND                                 G 
Sbjct: 314 MKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGN 373

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           MD+A +L  +MEE+ +   +  + +++HG+    +  K + +  ++KE    P       
Sbjct: 374 MDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGC 433

Query: 212 VVDLLAK 218
           +++L  K
Sbjct: 434 LINLYVK 440


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 1/214 (0%)

Query: 7   CKN-KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           C N ++ E A+ L + M ++G  PDV+ +++      ++ + + A  L   M+  GV  +
Sbjct: 196 CGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPN 255

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
              Y+  I    K G    +V+L + +  +    D+  YS +ID   K G+ E A  L  
Sbjct: 256 VIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLM 315

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +P   +VA+++TYSI+I      GQ ++A  L  +M+EN VAP+VIT+ + I    +  
Sbjct: 316 EMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKG 375

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  + + LL +M  + V P+A    IV+   AK 
Sbjct: 376 QWEEAVGLLREMPMEGVTPNAISYGIVISACAKR 409



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 103/215 (47%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  + E A++L  EM + G+ PDV+ ++T+     +  Q E AF+L  EM   GV A+  
Sbjct: 268 KGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANII 327

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY+I I    K G   E+V L R ++      D+  YS  I    K G+ E A+ L   +
Sbjct: 328 TYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREM 387

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
           P   +  + ++Y I+I      G+  +A DL  +M+ + V P+VI +   I    + +  
Sbjct: 388 PMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRW 447

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
            + + LL +M    + P+    +  +D  AK   S
Sbjct: 448 EQALWLLREMPATGLTPNVISYNSAIDACAKTGRS 482



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 94/205 (45%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL++   M  +G+KPD   +++         Q ERA +L   M   G   D  TY+  I 
Sbjct: 170 ALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIA 229

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
              K     E+V L R+++    + ++  YS  I    K G+ E A++L   +P   L  
Sbjct: 230 ACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAP 289

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DV+TYS +I      GQ + A  L ++M    V  N+IT+  +I    +  +  + + LL
Sbjct: 290 DVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALL 349

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +M+E  V PD    S  +   AK 
Sbjct: 350 REMQENGVAPDVITYSSTISACAKK 374



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 104/218 (47%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I+   K  + E A+ L  EM  +G+ P+ + +  +     +  +   A  L  EMQ  GV
Sbjct: 368 ISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGV 427

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D   Y+  ID   +     +++ L R +       ++ +Y+  ID   K+GR +IA+E
Sbjct: 428 PPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVE 487

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           L   +P   L  DV+TYS +I       Q ++A DLF +M+   + P+V++  T I+   
Sbjct: 488 LLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACA 547

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +     + +++L +M    ++PDA      +D  AK +
Sbjct: 548 QGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGD 585



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I    K  + E A+ L  EM   G+ PDV+ +++      +  Q E A  L  EM  +
Sbjct: 331 IVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPME 390

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  +Y I I    K G   E+++L + ++      D+  YS  ID   ++ R E A
Sbjct: 391 GVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQA 450

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   +P   L  +V++Y+  I      G+   A +L  +M  + +AP+VIT+  +I  
Sbjct: 451 LWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIAS 510

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                +  + ++L  +M+ + + PD    +  ++  A+ 
Sbjct: 511 CAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQG 549



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 92/204 (45%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ L   M  +G+KP+V++++       +  Q E A  L  EM   G+A D  TY+  ID
Sbjct: 240 AVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVID 299

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
              K G    +  L   +       +I  YS +I    K G+ E A+ L   +    +  
Sbjct: 300 ACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAP 359

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DV+TYS  I      GQ ++A  L  +M    V PN I++G +I    +     + I+LL
Sbjct: 360 DVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLL 419

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
            +M+   V PD    S  +D  A+
Sbjct: 420 QEMQAHGVPPDVINYSAAIDACAQ 443



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+   K  + E A  L  EM +KG+  +++ ++ +     +  Q E A  L  EMQ +G
Sbjct: 297 VIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENG 356

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TY+  I    K G   E+V L R + +     +  +Y  +I    K GR   A+
Sbjct: 357 VAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAI 416

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +  DV+ YS  I       + ++A  L  +M    + PNVI++ + I   
Sbjct: 417 DLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDAC 476

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
            +       +ELL +M    + PD    S V+   A       +L  F   +RQ
Sbjct: 477 AKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQ 530



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 7/229 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+   K      A++L  EM + G+ PDV+ ++       +  + E+A  L  EM   
Sbjct: 401 IVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPAT 460

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-LEI 119
           G+  +  +Y   ID   K G    +VEL R +       D+  YS +I   C  GR  E 
Sbjct: 461 GLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVI-ASCAMGRQWEE 519

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+LF  + R  +  DVV+ +  I+     G  ++A D+  +M    + P+ I++ T I 
Sbjct: 520 ALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAID 579

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA-----SIVSIVVDLLAKNEISL 223
              + +   ++I+LL +M    + PDA     ++ +  VD L K  + L
Sbjct: 580 ACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVL 628



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 90/206 (43%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ L  EM + G+ PDV+ ++ +        Q E A  LF EMQR G+  D  +    I+
Sbjct: 485 AVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAIN 544

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
              + G+  E++++   +  +    D  +Y   ID   K  R +  ++L   +    L  
Sbjct: 545 ACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTP 604

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D ++Y   +     DG   +A  L  DM    ++P+V+T+ + I+   +     +   LL
Sbjct: 605 DAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLL 664

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNE 220
            +M    + PD +  +  +D     +
Sbjct: 665 RQMPTFGLAPDVNSFNAAIDACGNGD 690



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 10/202 (4%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
            ++ E AL+L+ EM  +GI PDVV  NT      +    E A  +  EM   G+  D  +
Sbjct: 514 GRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAIS 573

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY-----SCLIDGLCKSGRLEIALEL 123
           Y   ID   K     E ++L R +  +    D  +Y     +C +DGL K      AL L
Sbjct: 574 YRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKE-----ALVL 628

Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
              +    L  DVVTY+  I+     G+  +A  L   M    +AP+V +F   I     
Sbjct: 629 LRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGN 688

Query: 184 INEPSKVIELLHKMKEKNVMPD 205
            ++    +E+L +M+   V P+
Sbjct: 689 GDQWGTAVEVLFEMRALGVSPN 710



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 3/146 (2%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + KEI   ++L  EM + G+ PD + +             + A  L  +M   G++ D  
Sbjct: 586 RWKEI---IDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVV 642

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   I+   K G   E+  L R +       D+ +++  ID      +   A+E+   +
Sbjct: 643 TYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEM 702

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMD 153
               +  +  TY   ++     G+ D
Sbjct: 703 RALGVSPNEATYLTAMYACKRCGEKD 728


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  C++ ++  A  ++  M   G+ P+ V +  L  G F     E  F LF EM+RDG
Sbjct: 44  LVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDG 103

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I   C+ G    +  LF  + +     ++ +Y+ LI GLC+  +L+ A+
Sbjct: 104 VEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAV 163

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF ++ R  +   +VT++++I G    G+M  A   F  M+   + P+V+T+  LI GF
Sbjct: 164 QLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGF 223

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEI 221
            R+ + ++ +     MKE+ + P     +I++   AK NE+
Sbjct: 224 CRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEM 264



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY      E    L++EM   G++P++  +N L        + + A  LFDEM   G
Sbjct: 79  LINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKG 138

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y I I GLC++  + ++V+LF  +R       I  ++ LIDG  K+G++  AL
Sbjct: 139 VVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANAL 198

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ +    L   VVTY+ +I G      + +A   FLDM+E  +AP  +T+  LI  F
Sbjct: 199 HFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAF 258

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            + NE  +   +L +M++  +  D     +++  L
Sbjct: 259 AKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHAL 293



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GY K  ++  AL+ +++M + G+ P VV +N L  G   +  + RA + F +M+  
Sbjct: 183 LLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKER 242

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A    TYTI I    K   +  +  +   +     E+D+Q+Y  L+  LC  G++  A
Sbjct: 243 GLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHA 302

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF S+    +  + V Y +MI+G   +G   KA  L ++M +N + PNV ++   I  
Sbjct: 303 RKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRL 362

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
                +  +   L+  M+   +    +I  I++D  AK  +  ++  SFT
Sbjct: 363 LCNEGKCQEAEALIDDMEHAGLQTSETICRILLD--AKARLHGSTDDSFT 410



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 106/216 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C++ +++ A+ L+  M  +GI+P +V  N L  G  +  ++  A   F++M+  
Sbjct: 148 ILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAA 207

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY   I G C+   I  +V  F  ++          Y+ LI    K   ++ A
Sbjct: 208 GLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRA 267

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  L  DV +Y +++H L  +G+M  A  LF  M+   V PN + +  +I+G
Sbjct: 268 FMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYG 327

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           + R     K + L+ +M++  ++P+ +   + + LL
Sbjct: 328 YGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLL 363



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 46  QVERAFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           +V  A  +     + G AA D    T  +   C++G + E+  +F  +  L    +   Y
Sbjct: 17  EVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTY 76

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LI+G    G  E+   LF  + R  +  ++ TY+ +I      G+   A  LF +M  
Sbjct: 77  TALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPV 136

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
             V  NV+++  LI G  R ++    ++L   M+ + + P     ++++D   K     N
Sbjct: 137 KGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMAN 196

Query: 225 SLPSF 229
           +L  F
Sbjct: 197 ALHFF 201



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%)

Query: 99  LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
           LD+ A + L+   C+SG +  A  +F  +PR  +  + VTY+ +I+G +  G  +    L
Sbjct: 36  LDVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFAL 95

Query: 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +M  + V PN+ T+  LI  + R  E      L  +M  K V+ +    +I++  L +
Sbjct: 96  FAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCR 155

Query: 219 NEISLNSLPSFTVHERQ 235
           +    +++  F    R+
Sbjct: 156 HSKLKDAVQLFEAMRRE 172


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK      A   + EM+ KG+ P VV + +L  G     +  +AFK+++EM   G
Sbjct: 268 LINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKG 327

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T T+T  I GLC+   + E++ LF  ++  K       Y+ +I+G C+SG +  A 
Sbjct: 328 ISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAF 387

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +     V D  TY  +I GL + G++ +A +   D+ ++    N + +  L+HG+
Sbjct: 388 HLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGY 447

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +       +     M E+ V  D    +I++D  A+
Sbjct: 448 CKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAR 484



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 9/214 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK++ I  AL + + ++ KG++ +VV +   F           A  LF EM   
Sbjct: 171 VLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKF---------NEAELLFKEMGEK 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+  TY+I ID  C+ G +  ++     +     E  +  Y+ LI+G CK G    A
Sbjct: 222 GLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAA 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  +    L   VVTY+ +I G  N+G+  KA  ++ +M    ++PN  TF  +I G
Sbjct: 282 KYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISG 341

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             R N  ++ I L  +MKE+ +MP     +++++
Sbjct: 342 LCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIE 375



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 1/213 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  +  +      L  EM + G++PD VI+  +     +   ++ AF L+D M  +
Sbjct: 477 ILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDE 536

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TYT  I+GLCK G + ++  L +   +     +   Y C +D L + G +E A
Sbjct: 537 GCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKA 596

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L H++ +G L A  V+Y+I+I G    G++++A  L   M +N + P+ IT+ T+I+ 
Sbjct: 597 VQLHHAMLKGFL-ATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYE 655

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             + +   + I+L H M +K + PD    S +V
Sbjct: 656 QCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLV 688



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 96/217 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+   +  A+ L+ EM  + I P  V +N +  G      +  AF L DEM   G
Sbjct: 338 IISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKG 397

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY   I GLC  G + E+ E    L     +L+   YS L+ G CK GR + A+
Sbjct: 398 FVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAV 457

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    +  D+V Y+I+I G   +        L  +M  + + P+ + +  +I   
Sbjct: 458 SACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRH 517

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   L   M ++  +P+    + +++ L K
Sbjct: 518 SKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCK 554



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 113/282 (40%), Gaps = 69/282 (24%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+C++  I  A +L  EM+ KG  PD   +  L  GL  + +V  A +  D++ +D
Sbjct: 372 VMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKD 431

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC-------- 112
               +   Y+  + G CK G   ++V   R +      +D+  Y+ LIDG          
Sbjct: 432 HHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRAL 491

Query: 113 ---------------------------KSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                                      K+G L+ A  L+  +     + +VVTY+ +I+G
Sbjct: 492 FGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALING 551

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGT----------------------------- 176
           L   G MDKA  L  +   + V PN IT+G                              
Sbjct: 552 LCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATT 611

Query: 177 -----LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                LI GF R+ +  +  +LLH M + +++PD    S ++
Sbjct: 612 VSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTII 653



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 3/199 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+  E++ A+    +M    I+  V  +N+L  G  ++     A   FDEM   
Sbjct: 232 ILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDK 291

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT  I G C  G   ++ +++  +       +   ++ +I GLC++  +  A
Sbjct: 292 GLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEA 351

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + LF  +    ++   VTY++MI G    G + +A  L  +M      P+  T+  LI G
Sbjct: 352 IRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISG 411

Query: 181 FI---RINEPSKVIELLHK 196
                R++E  + ++ LHK
Sbjct: 412 LCSVGRVSEAKEFVDDLHK 430



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P+V   + L  GL    +      LFD++    V  D   Y+  +  LC+     ++ E+
Sbjct: 94  PEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEM 153

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
              +   +C+L I  Y+ LI GLCKS R+  ALE+ + L +  L A+VVTY    +G +N
Sbjct: 154 IHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY----YGKFN 209

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           + ++     LF +M E  +  N IT+  LI  F R  E    I  L KM + ++
Sbjct: 210 EAEL-----LFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASI 258



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 1/172 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   ++ A  L  E L   + P+ + +      L     +E+A +L   M + G
Sbjct: 548 LINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-G 606

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A T +Y I I G C+ G I E+ +L   +       D   YS +I   CK   L+ A+
Sbjct: 607 FLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAI 666

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           +L+H++    L  D + YS ++HG    G+++KA +L  +M    +  N +T
Sbjct: 667 KLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+  +IE A  L   M    I PD + ++T+     +   ++ A KL+  M   
Sbjct: 616 ILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDK 675

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVEL 88
           G+  DT  Y+  + G C  G + ++ EL
Sbjct: 676 GLKPDTLAYSFLVHGCCIAGELEKAFEL 703


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 112/215 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC++  +E AL + + M   GI+ D+  +NTL  GL  ++++E A KL   M   G
Sbjct: 329 MIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKG 388

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +  +YT  I    K G +VE+  LFR +        +  Y+ +IDG  K+G +  A 
Sbjct: 389 VAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAE 448

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  LV D+ TY+ ++HG   +G++D A  LF +M+     PNV+ +  L+ G 
Sbjct: 449 RFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGL 508

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +     +  +L   M    + PD ++ S++V  L
Sbjct: 509 AKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSL 543



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN YC+   +  A  ++ E +  G++P+   +  L  G  +I Q+E A  L  +MQ  G
Sbjct: 259 VINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRG 318

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   +   IDG C++G + +++E+   +  +  ELDI  Y+ L  GLC+  R+E A 
Sbjct: 319 VGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAK 378

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H +    +  + V+Y+ +I     +G M +A  LF DME     P+V+T+  +I G+
Sbjct: 379 KLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGY 438

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           I+     +      +M++K ++PD
Sbjct: 439 IKNGSIREAERFKKEMEKKGLVPD 462



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 104/219 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G  +  +I     +Y EM  K +  DV  ++ +         V RA ++FDE    
Sbjct: 223 ILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGH 282

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  + RTY   I+G CK G I  +  L   +++     +   ++ +IDG C+ G +E A
Sbjct: 283 GVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKA 342

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+   + +  +  D+ TY+ +  GL    +M+ A  L   M E  VAPN +++ TLI  
Sbjct: 343 LEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISI 402

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  +   L   M+ K   P     ++++D   KN
Sbjct: 403 HAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKN 441



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 95/202 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G+CK+  ++ A  L  E+   G+  +   +N+L          +    L  EM+  
Sbjct: 153 VVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENR 212

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TYTI +DGL + G I +   ++  ++      D+  YS +I+  C+ G +  A
Sbjct: 213 GVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRA 272

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F       +  +  TY  +I+G    GQ++ A  L  DM+   V  N I F T+I G
Sbjct: 273 SEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDG 332

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
           + R     K +E+   M++  +
Sbjct: 333 YCRHGMVEKALEIKAVMEKMGI 354



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ + K  ++  A  L+ +M  KG +P VV +N +  G  +   +  A +   EM++ G
Sbjct: 399 LISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKG 458

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G C NG +  ++ LF  ++    + ++ AY+ L+ GL K GR E A 
Sbjct: 459 LVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAF 518

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
           +L+  +    L  D   YS+++  L+ D + D
Sbjct: 519 QLYDDMLAAGLTPDDTLYSVLVGSLHTDSRKD 550



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 5/206 (2%)

Query: 14  GALNLYSEMLSKGIK--PDVVIHNTLFI---GLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           G L   +++L K I   P  V   +  +   G  +   V+ A  L DE+ R GV  +   
Sbjct: 126 GQLPAAADLLGKAIASCPASVTPLSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACC 185

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y   +D   +         L + +     E  +  Y+ L+DGL ++G +     ++  + 
Sbjct: 186 YNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMK 245

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           R  +  DV  YS +I+     G + +A ++F +   + V PN  T+G LI+GF +I +  
Sbjct: 246 RKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIE 305

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVD 214
               LL  M+ + V  +  + + ++D
Sbjct: 306 AAEMLLADMQLRGVGHNQIVFNTMID 331



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GY KN  I  A     EM  KG+ PD+  +  L  G     +V+ A +LF+EM+  
Sbjct: 433 VMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHR 492

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           G   +   YT  + GL K G   E+ +L+  +       D   YS L+  L    R
Sbjct: 493 GTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSR 548



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 94  ILKCELDIQ--AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           I  C   +   + S ++DG CKSG ++ A  L   LPR  +  +   Y+ ++        
Sbjct: 139 IASCPASVTPLSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRN 198

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
            D    L  +ME   V P V T+  L+ G  R  + SKV  +  +MK KNV  D    S 
Sbjct: 199 DDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSA 258

Query: 212 VVDLLAKN 219
           V++   + 
Sbjct: 259 VINAYCRG 266


>gi|326497659|dbj|BAK05919.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 523

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM---LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           ILI  Y KN + E A  +  EM       ++P++V ++TL  GL    +++ AF+LF+ M
Sbjct: 214 ILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEAFELFEGM 273

Query: 58  -QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
            ++D +  D  TY + IDG C+ G + ++  +F  +R  +CE +   Y+ LI+G CK G 
Sbjct: 274 IEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLINGHCKKGD 333

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +E A  +F  +    +  D V+Y+ +I  L   G +D+  DL ++M E     +V+T+  
Sbjct: 334 VENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKADVVTYNL 393

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L+ G  +    ++V++LL ++ E+ V  + +   IV++ L  +
Sbjct: 394 LLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSS 436



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 113/220 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+C+  ++E A  ++  M     +P+   + TL  G  +   VE A  +F+EM+  
Sbjct: 288 VIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSA 347

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  +YT  I  LC++G + E ++L   +R   C+ D+  Y+ L++GLCK GR+   
Sbjct: 348 GVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEV 407

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   LP   +  +V +Y I+++ L + G M+KA  L   M      P+      L+ G
Sbjct: 408 MDLLGRLPEEGVQLNVASYRIVMNTLCSSGDMEKAVGLLGLMLGRGFLPHYAASNKLLIG 467

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
              +   +     L+ + +   MP+AS  + +++ + ++ 
Sbjct: 468 LCDVGRVADATAALYGLAKFGFMPEASCWAKLIEAVCRDR 507



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 1/191 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C+  +++ A  L+  M+ K  I PD + +N +  G   + QVE+A  +F  M+++
Sbjct: 253 LLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKN 312

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   Y   I+G CK G +  +  +F  +R    E D  +Y+ LI  LC+ G ++  
Sbjct: 313 ECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEG 372

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +      ADVVTY++++ GL  DG+M +  DL   + E  V  NV ++  +++ 
Sbjct: 373 IDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNT 432

Query: 181 FIRINEPSKVI 191
                +  K +
Sbjct: 433 LCSSGDMEKAV 443



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 35/193 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK  ++E A  ++ EM S G++PD V +  L   L     V+    L  EM+  G
Sbjct: 324 LINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKG 383

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID------------ 109
             AD  TY + ++GLCK+G + E ++L   L     +L++ +Y  +++            
Sbjct: 384 CKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSSGDMEKAV 443

Query: 110 -----------------------GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                  GLC  GR+  A    + L +   + +   ++ +I  +
Sbjct: 444 GLLGLMLGRGFLPHYAASNKLLIGLCDVGRVADATAALYGLAKFGFMPEASCWAKLIEAV 503

Query: 147 YNDGQMDKAHDLF 159
             D ++ ++ +L 
Sbjct: 504 CRDRKLRRSVELL 516



 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N  C + ++E A+ L   ML +G  P     N L IGL ++ +V  A      + + 
Sbjct: 428 IVMNTLCSSGDMEKAVGLLGLMLGRGFLPHYAASNKLLIGLCDVGRVADATAALYGLAKF 487

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G   +   +   I+ +C++  +  SVEL   L
Sbjct: 488 GFMPEASCWAKLIEAVCRDRKLRRSVELLDIL 519


>gi|255661022|gb|ACU25680.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 376

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  +++ A+++ + M+  G KP   ++N L  GL    + E AF++F EM    
Sbjct: 135 MINGLCKEAKLDKAVSVLNGMIKSGCKPKAHVYNALINGLVGASKFEDAFRVFHEMGTTH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCK     E+ +L + +        +  YS LI GLC   ++E+AL
Sbjct: 195 CSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWNSSVITYSLLIKGLCLGHKVEMAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M  A  L+ D+     APN++T  TL+ GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDINHWNCAPNLVTHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I +  L + N IS
Sbjct: 315 YKDGDIRNALVIWARILRNGLQPDIISYNITLKGLCSCNRIS 356



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 102/203 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING     + E A  ++ EM +    P +V +NTL  GL +  +   A+ L  EM   G
Sbjct: 170 LINGLVGASKFEDAFRVFHEMGTTHCSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             +   TY++ I GLC    +  +++L+  +     + D+Q ++ LI GLC  G++++AL
Sbjct: 230 WNSSVITYSLLIKGLCLGHKVEMALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLAL 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +       ++VT++ ++ G Y DG +  A  ++  +  N + P++I++   + G 
Sbjct: 290 SLYFDINHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRNGLQPDIISYNITLKGL 349

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
              N  S  I  LH    K ++P
Sbjct: 350 CSCNRISDSILFLHDALTKKIVP 372



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 127/274 (46%), Gaps = 37/274 (13%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG---VA 63
           C++ +I+GA  +Y E++   + PD V++NT+  G F + +++  F+L++ M R+G   VA
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGFFRVGRIKDCFELWELMGREGSRNVA 60

Query: 64  A-------------------------------DTRTYTIFIDGLCKNGYIVESVELFRTL 92
           +                               D+ TY I + G CKN YI +S+ +    
Sbjct: 61  SFNIMMRGLFDNGEVDEVISIWELMKNSGFVEDSITYGILVHGFCKNEYINKSLHVLEMA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 LD  AYS +I+GLCK  +L+ A+ + + + +         Y+ +I+GL    + 
Sbjct: 121 ERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPKAHVYNALINGLVGASKF 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M     +P ++T+ TLI+G  +     +  +L+ +M EK         S++
Sbjct: 181 EDAFRVFHEMGTTHCSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWNSSVITYSLL 240

Query: 213 VDLLA---KNEISLNSLPSFTVHERQEEVDESNV 243
           +  L    K E++L      T    + +V   N+
Sbjct: 241 IKGLCLGHKVEMALQLWNQVTSKGFKPDVQMHNI 274



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 104/213 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N E++  ++++  M + G   D + +  L  G  +   + ++  + +  +R 
Sbjct: 64  IMMRGLFDNGEVDEVISIWELMKNSGFVEDSITYGILVHGFCKNEYINKSLHVLEMAERK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   + ++V +   +    C+     Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPKAHVYNALINGLVGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +FH +        +VTY+ +I+GL    +  +A+DL  +M E     +VIT+  LI G
Sbjct: 184 FRVFHEMGTTHCSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWNSSVITYSLLIKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               ++    ++L +++  K   PD  + +I++
Sbjct: 244 LCLGHKVEMALQLWNQVTSKGFKPDVQMHNILI 276



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK +    A +L  EML KG    V+ ++ L  GL   H+VE A +L++++   G
Sbjct: 205 LINGLCKGERFGEAYDLVKEMLEKGWNSSVITYSLLIKGLCLGHKVEMALQLWNQVTSKG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + + I I GLC  G +  ++ L+  +    C  ++  ++ L++G  K G +  AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDINHWNCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            ++  + R  L  D+++Y+I + GL +  ++  +     D     + P +IT
Sbjct: 325 VIWARILRNGLQPDIISYNITLKGLCSCNRISDSILFLHDALTKKIVPTIIT 376



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 76/140 (54%), Gaps = 4/140 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C   ++E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ ++   
Sbjct: 239 LLIKGLCLGHKVEMALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDINHW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
             A +  T+   ++G  K+G I  ++ ++   RIL+  L  DI +Y+  + GLC   R+ 
Sbjct: 299 NCAPNLVTHNTLMEGFYKDGDIRNALVIWA--RILRNGLQPDIISYNITLKGLCSCNRIS 356

Query: 119 IALELFHSLPRGVLVADVVT 138
            ++   H      +V  ++T
Sbjct: 357 DSILFLHDALTKKIVPTIIT 376


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 116/215 (53%), Gaps = 3/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +++ A  L  +M+    +PD + +N +  G F  H  + AF+L  EM+  G
Sbjct: 390 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAG 449

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+I I GLC++G   ++ +L   +     + +   Y+ LI G C+ G + +A 
Sbjct: 450 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLAC 509

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  ++ D+  Y+ +I GL   G+++++   F  M+E  + PN  T+  LIHG+
Sbjct: 510 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 569

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           ++  +     +L+ +M +  + P+     I +DLL
Sbjct: 570 LKNGDLESAEQLVQRMLDTGLKPND---VIYIDLL 601



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 102/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C++  +E A     +M   G+ PD   +  L  GL +  +   A  L DEM   
Sbjct: 284 VLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA 343

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y   IDG  + G   E+ ++ + +     + +   Y  L+ GLCK G+++ A
Sbjct: 344 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 403

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R     D +TY+++I G +       A  L  +ME   ++PNV T+  +IHG
Sbjct: 404 SLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHG 463

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  EP K  +LL +M  K + P+A + + ++
Sbjct: 464 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 496



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 110/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+ ++   + A  L SEM + GI P+V  ++ +  GL +  + E+A  L +EM   
Sbjct: 424 LIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 483

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   I G C+ G +  + E+F  +  +    D+  Y+ LI GL K GR+E +
Sbjct: 484 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 543

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +    L+ +  TYS +IHG   +G ++ A  L   M +  + PN + +  L+  
Sbjct: 544 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 603

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + + ++  KV      M ++ VM D  I  I++  L+ +
Sbjct: 604 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSS 642



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+    +  +E A  + S +   G  PDV ++++L  GL +    E+AF + DEM + 
Sbjct: 634 ILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKK 693

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   Y   IDGLCK+G I  +  +F ++       +   Y+ LIDG CK G +  A
Sbjct: 694 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 753

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L++ +    +  D   YS++  G  + G +++A  L  +M     A ++ +F  L+ G
Sbjct: 754 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDG 812

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  + ++LLH +  + ++P+A  +  ++  L++
Sbjct: 813 FCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 850



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+   +  A  ++ +M    + PD+  +N+L  GL ++ +VE + K F +MQ  G
Sbjct: 495 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 554

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I G  KNG +  + +L + +     + +   Y  L++   KS  +E   
Sbjct: 555 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 614

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             F S L +GV++ D   Y I+IH L + G M+ A  +   +E+N   P+V  + +LI G
Sbjct: 615 STFKSMLDQGVML-DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 673

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  K   +L +M +K V P+    + ++D L K+
Sbjct: 674 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 712



 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +    + A  +  EM++ G++P+ + ++ L  GL ++ Q++RA  L  +M RD 
Sbjct: 355 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY + I+G  ++    ++  L   +       ++  YS +I GLC+SG  E A 
Sbjct: 415 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +   Y+ +I G   +G +  A ++F  M +  V P++  + +LI G 
Sbjct: 475 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  +   +M+E+ ++P+    S ++    KN
Sbjct: 535 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 572



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 97/181 (53%), Gaps = 1/181 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ +I  A N+++ +L+KG+ P+ V + +L  G  ++  +  AF L++EM   G
Sbjct: 705 LIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATG 764

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y++   G    G + +++ L   +  L+    I +++ L+DG CK G+++  L
Sbjct: 765 ITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM-FLRGHASISSFNNLVDGFCKRGKMQETL 823

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H +    LV + +T   +I GL   G++ + H +F+++++         F +L    
Sbjct: 824 KLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDM 883

Query: 182 I 182
           I
Sbjct: 884 I 884



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y K+  ++ A  +   M  +G+ P +   N L   L     +   +K+ + M   
Sbjct: 179 VLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 238

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TY+  I+  CK      + ++   +R   C L+   Y+ LI GLC+SG +E A
Sbjct: 239 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 298

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 +    LV D  TY  +I+GL    + ++A  L  +M    + PNV+ +  LI G
Sbjct: 299 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 358

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F+R     +  +++ +M    V P+
Sbjct: 359 FMREGNADEAFKMIKEMVAAGVQPN 383



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 4/225 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  + E A  +  EM  KG+ P++V +N L  GL +   +  A  +F+ +   G
Sbjct: 670 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 729

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  IDG CK G I  +  L+  +       D   YS L  G   +G LE A+
Sbjct: 730 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 789

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   +  RG   A + +++ ++ G    G+M +   L   +    + PN +T   +I G
Sbjct: 790 FLIEEMFLRGH--ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISG 847

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDAS-IVSIVVDLLAKNEISLN 224
                + S+V  +  ++++K     A    S+ +D++ + +I L+
Sbjct: 848 LSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLD 892



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  +++  L L   ++ +G+ P+ +    +  GL E  ++     +F E+Q+  
Sbjct: 809 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 868

Query: 62  VAADTRTYT-IFIDGL-----------------CKNGYIVESVELFRTLRILKCELDIQA 103
             +  R ++ +F+D +                 CK G + +++ L   +      +   +
Sbjct: 869 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 928

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
           Y  ++D LC+ G+L  AL L   + +  +        I++  L+  G + + H+  LD
Sbjct: 929 YLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQE-HNTVLD 985



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 65/152 (42%)

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           + +D   K+G + ++ E+   +R       I+  + L+  L ++  + +  ++   +   
Sbjct: 179 VLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 238

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +  DV TYS +I       + D A  + ++M E     N +T+  LI G  R     + 
Sbjct: 239 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 298

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                 M++  ++PD      +++ L K+  S
Sbjct: 299 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 330


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 126/238 (52%), Gaps = 3/238 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK+ ++   L  Y EM   G+KP+VV ++TL     +   +++A K + +M+R G
Sbjct: 209 LINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVG 268

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  +D  CK G + ++  L   +  +  E ++  Y+ LIDGLC + R++ A 
Sbjct: 269 HVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAE 328

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    ++ ++ +Y+ +IHG      MD+A +L  +++   + P+++ +GT I G 
Sbjct: 329 KLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGL 388

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
             + +      ++++M+E  +  +  I + ++D   K   S N      + E  +E+D
Sbjct: 389 CGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFK---SGNPTEGLHLLEEMQELD 443



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ + K  + +G    + +M+  G KP V  +N +   +++   +E A  LF+EM+  G
Sbjct: 104 LLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRG 163

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT TY   IDG  K G + ++V  F  ++ + CE D+  Y+ LI+  CKSG+L   L
Sbjct: 164 LIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGL 223

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E +  + +  L  +VV+YS ++     +  M +A   ++DM      PN  T+ +L+   
Sbjct: 224 EFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDAN 283

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +I   S    L ++M E  V  +    + ++D L   E
Sbjct: 284 CKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAE 322



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+   K  +IE A  L+ EM  +G+ PD V +N++  G  ++ +++     F+EM+  
Sbjct: 138 IMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSM 197

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TY   I+  CK+G + + +E +R ++    + ++ +YS L+D  CK   ++ A
Sbjct: 198 SCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQA 257

Query: 121 LELFHSLPR--------------------GVLV---------------ADVVTYSIMIHG 145
           ++ +  + R                    G L                 +VVTY+ +I G
Sbjct: 258 IKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDG 317

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L +  +M +A  LF  M    V PN+ ++  LIHGF++     + +ELL+++K + + PD
Sbjct: 318 LCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPD 377



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 36/240 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K K ++ AL L +E+  +GI+PD++++ T   GL  + ++E A  + +EMQ +G
Sbjct: 349 LIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENG 408

Query: 62  VAADTRTYT-----------------------------------IFIDGLCKNGYIVESV 86
           + A+T  YT                                   + IDGLCKN  + +++
Sbjct: 409 IKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAI 468

Query: 87  ELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           + F R       + +   Y+ +IDGLCK  +++ A  LF  + +  LV D   Y+ ++ G
Sbjct: 469 DYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDG 528

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G M +A  L   M E  +  +++ + +L+ GF + N+  K    L +M  + ++PD
Sbjct: 529 NLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPD 588



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 115/228 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +CK   ++ A+  Y +M   G  P+   + +L     +I  +  AF+L +EM   G
Sbjct: 244 LVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  IDGLC    + E+ +LF  +       ++ +Y+ LI G  K+  ++ AL
Sbjct: 304 VEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRAL 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + L    +  D++ Y   I GL    +++ A  +  +M+EN +  N + + TL+  +
Sbjct: 364 ELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAY 423

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +   P++ + LL +M+E +         +++D L KN++   ++  F
Sbjct: 424 FKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYF 471



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C  + ++ A  L+ +M++ G+ P++  +N L  G  +   ++RA +L +E++  G
Sbjct: 314 LIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA----YSCLIDGLCKSGRL 117
           +  D   Y  FI GLC     +E +E  + +     E  I+A    Y+ L+D   KSG  
Sbjct: 374 IQPDLLLYGTFIWGLCG----LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNP 429

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGT 176
              L L   +        VVT+ ++I GL  +  + KA D F  M  +  + PN   +  
Sbjct: 430 TEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTA 489

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +I G  + N+      L  +M ++ ++PD +  + ++D
Sbjct: 490 MIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMD 527



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK   +  A  L +EML  G++ +VV +  L  GL +  +++ A KLF +M   G
Sbjct: 279 LVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAG 338

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +Y   I G  K   +  ++EL   L+    + D+  Y   I GLC   ++E A 
Sbjct: 339 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAK 398

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +    + A+ + Y+ ++   +  G   +   L  +M+E      V+TF  LI G 
Sbjct: 399 VVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGL 458

Query: 182 IRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAK 218
            +    SK I+   +M     + P+A++ + ++D L K
Sbjct: 459 CKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCK 496



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 92/193 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P   + + LF  L ++  +E A + F +M+R  V   TR+    +    K G        
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 120

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F+ +     +  +  Y+ +ID + K G +E A  LF  +    L+ D VTY+ MI G   
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G++D     F +M+  +  P+VIT+ +LI+ F +  +  K +E   +MK+  + P+   
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVS 240

Query: 209 VSIVVDLLAKNEI 221
            S +VD   K ++
Sbjct: 241 YSTLVDAFCKEDM 253



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A   +S+M    + P     N L     ++ + +   + F +M   G      TY I
Sbjct: 79  LEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNI 138

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            ID + K G I  +  LF  ++      D   Y+ +IDG  K GRL+  +  F  +    
Sbjct: 139 MIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              DV+TY+ +I+     G++ K  + + +M+++ + PNV+++ TL+  F + +   + I
Sbjct: 199 CEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAI 258

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    M+    +P+    + +VD   K
Sbjct: 259 KFYVDMRRVGHVPNEFTYTSLVDANCK 285



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI+G CKNK +  A++ +  M +  G++P+  ++  +  GL + +QV+ A  LF++M +
Sbjct: 453 VLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQ 512

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G+  D   YT  +DG  K G ++E++ L   +  +  +LD+ AY+ L+ G  +  +L+ 
Sbjct: 513 EGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQK 572

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
           A      +    ++ D V    ++   Y  G +D+A
Sbjct: 573 ARSFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEA 608



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 2/178 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L++ Y K+      L+L  EM     +  VV    L  GL +   V +A   F  M  D 
Sbjct: 419 LMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDF 478

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   YT  IDGLCK   +  +  LF  +       D  AY+ L+DG  K G +  A
Sbjct: 479 GLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEA 538

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN-VITFGTL 177
           L L   +    +  D++ Y+ ++ G     Q+ KA     +M    + P+ V+  G L
Sbjct: 539 LALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVL 596


>gi|255660968|gb|ACU25653.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 376

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ A+++ + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+G CKN    E+  L + L     +  +  YS L++GLC   ++E AL
Sbjct: 195 CSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M+ A  L+ DM     APN+++  TL+ GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMELALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I ++ L + N IS
Sbjct: 315 YKDGDIRNALVIWARILRNGLEPDIISYNITLEGLCSCNRIS 356



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 34/245 (13%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------------ 54
           C++ +I+GA  +Y E++   + PD V++N +  G F + +++  F+L+            
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 55  ---------------DE-------MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
                          DE       M+  G   D+ TY I + G CKNGYI +S+ +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 L   AYS +I+GLCK   L+ A+ + + + +     +V  Y+ +I+GL    + 
Sbjct: 121 EQKGGVLGAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKF 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M     +P +IT+ TLI+GF +     +   L+ ++ +K + P     S++
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 213 VDLLA 217
           ++ L 
Sbjct: 241 MEGLC 245



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 112/227 (49%), Gaps = 3/227 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G       Y+  I+GLCK   +  +V +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLGAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+G   +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL---AKNEISLN 224
               ++  + ++L +++  K   PD  + +I++  L    K E++L+
Sbjct: 244 LCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMELALS 290



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C + ++E AL L++++ SKG KPDV +HN L  GL  + ++E A  L+ +M R 
Sbjct: 239 MLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMELALSLYFDMNRW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  ++GLC   R+ 
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLEGLCSCNRIS 356

Query: 119 IALELFH 125
            A+   H
Sbjct: 357 DAILFLH 363


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+    + AL L   M   G  PD + HN L  GL    QV R   L   +QRD
Sbjct: 223 VVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRD 282

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV   +  TYT  I G CK G + +++ ++  +       +   Y+ LI+G  K+  +E 
Sbjct: 283 GVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMES 342

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ ++  L       DVVT+S +I G    GQ+D A  ++ +M ++ + PNV TF  +IH
Sbjct: 343 AVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIH 402

Query: 180 GFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKN 219
              + N  ++ +  L ++  + ++ P   I + V+D+L K 
Sbjct: 403 SLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKG 443



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 2/227 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+N        + A+ L+   +  G+  PD    N +  G+  +   ++A +L + M   
Sbjct: 188 LLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEF 247

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G + DT T+ I +DGLC+   +    +L R L R   C  ++  Y+ +I G CK+GR+E 
Sbjct: 248 GCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMED 307

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL +++ +       + VTY+++I+G      M+ A  ++  +      P+V+TF +LI 
Sbjct: 308 ALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLID 367

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           G+ R  +    + +  +M + ++ P+    SI++  L K   S  +L
Sbjct: 368 GYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEAL 414



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 36/204 (17%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGY K  ++E A+ +Y +++ +   PDVV  ++L  G     Q++ A +++ EM + 
Sbjct: 329 VLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQH 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK------------------------ 96
            +  +  T++I I  LCK     E++   R L +                          
Sbjct: 389 HIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEE 448

Query: 97  ------------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
                       C  D   Y+ LI G C  GR+  A+ LFH +       D +T +  I 
Sbjct: 449 ANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFIS 508

Query: 145 GLYNDGQMDKAHDLFLDMEENAVA 168
            +   G  ++   + L    +A A
Sbjct: 509 CVLKAGMPNEVDQIMLIASGHASA 532



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 50  AFKLFDEMQ-RDGVAADTRTYTIFIDGLCKN-GYIVESVELFRTLRILKCELDIQAYSCL 107
           A KLFD+M  + G   D   ++ F+ G C N G +  +V L          ++  AY+ L
Sbjct: 130 ALKLFDQMTDQSGYLPDAVFFS-FVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNL 188

Query: 108 IDGLCKSGRLEIALELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           ++ L   GR + A+ LF S  + G+   D  +++++I G+   G   KA +L   M E  
Sbjct: 189 LNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFG 248

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
            +P+ IT   L+ G  R  + ++  +LL +++   V MP+    + V+    K
Sbjct: 249 CSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCK 301


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K    E A+ +   +  +GI P++  +NT+ I      Q + A ++++ M   G
Sbjct: 271 LIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAG 330

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  I    KNG +  ++++F+ +    CE ++  YS LI    K+GR E+AL
Sbjct: 331 AQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELAL 390

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       +VVTY+ +I       Q +KA ++F  M+     P+ +TFG LI  +
Sbjct: 391 ELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAY 450

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
            R     + +    +MK  N  PD+ + + +V  L K  +    +  FT   RQE
Sbjct: 451 DRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLVWAQI--FTPPCRQE 503



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 93/196 (47%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           +++  AL L +EM S+GI+ +V  ++ L     + ++++ A  ++ +M  +G   +  TY
Sbjct: 209 QQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTY 268

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
              ID   K G   E++ +   L     + +I+ Y+ +I     SG+ + AL ++  +  
Sbjct: 269 NTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLA 328

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                   TY+ +I     +GQ+D+A  +F DM       NVIT+ +LI    +      
Sbjct: 329 AGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWEL 388

Query: 190 VIELLHKMKEKNVMPD 205
            +EL  +M  +   P+
Sbjct: 389 ALELFREMHTEGCRPN 404



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 46  QVERAFKLFDEMQRDGVAAD------TRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
            V RA +LFD ++    + D      T TYT  I        +  ++EL   +R    + 
Sbjct: 169 HVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQC 228

Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
           ++  YS L++   K   L++AL+++  +       ++VTY+ +I      G  ++A  + 
Sbjct: 229 NVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVL 288

Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +E   + P + T+ T+I       +  + + +  +M      P A+  + ++    KN
Sbjct: 289 DALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKN 348


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C   ++E AL+L  E+  KG+ P+V   N L   L ++     A +LF+EM+  G
Sbjct: 377 LIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ID LC +G + ++++L + + +  C      Y+ +IDGLCK  R+E A 
Sbjct: 437 CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAE 496

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  + +T++ +I GL N  ++D A +L   M    + PN +T+ +++  +
Sbjct: 497 EVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHY 556

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +    SK  ++L  M       D    + +++ L K
Sbjct: 557 CKQGNISKAADILQTMTANGFEVDVVTYATLINGLCK 593



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 110/229 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  +   A+ L+ EM S G  PD V +N L   L    ++ +A  L  EM+  
Sbjct: 411 ILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVS 470

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T TY   IDGLCK   I E+ E+F  + +     +   ++ LIDGLC + R++ A
Sbjct: 471 GCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDA 530

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +    L  + VTY+ ++      G + KA D+   M  N    +V+T+ TLI+G
Sbjct: 531 AELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLING 590

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             +       ++LL  M+ K + P     + V+  L +     ++L  F
Sbjct: 591 LCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLF 639



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   IE AL L + M   G  P  V  N L  G  ++ +V  A     +   DG
Sbjct: 237 LMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADG 296

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T++ F++GLC+NG++  ++++   +    CE D+  YS +I+ LC +G LE A 
Sbjct: 297 FEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAK 356

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + +     + D  T++ +I  L  + Q+++A DL  ++    ++PNV TF  LI+  
Sbjct: 357 GIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINAL 416

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++ +P   + L  +MK     PD    +I++D L  +
Sbjct: 417 CKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSS 454



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  C N E+E A  + ++M+  G  PD    NTL + L   +Q+E A  L  E+   G
Sbjct: 342 VINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKG 401

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  T+ I I+ LCK G    +V LF  ++   C  D   Y+ LID LC SG+L  AL
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKAL 461

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +         VTY+ +I GL    ++++A ++F  M+   +  N ITF TLI G 
Sbjct: 462 DLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGL 521

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
                     EL+ +M  + + P+
Sbjct: 522 CNAERIDDAAELVDQMISEGLQPN 545



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 110/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +NG C+N  ++ AL +   ML +G +PDV  ++T+   L    ++E A  + ++M   G
Sbjct: 307 FVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSG 366

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT T+   I  LC    + E+++L R L +     ++  ++ LI+ LCK G   +A+
Sbjct: 367 CLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAV 426

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       D VTY+I+I  L + G++ KA DL  +ME +    + +T+ T+I G 
Sbjct: 427 RLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGL 486

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     +  E+  +M    +  +A   + ++D L   E
Sbjct: 487 CKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAE 525



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   +  AL    + ++ G +PD V  +T   GL +   V+ A K+   M ++
Sbjct: 271 VLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQE 330

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY+  I+ LC NG + E+  +   +    C  D   ++ LI  LC   +LE A
Sbjct: 331 GCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEA 390

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   L    L  +V T++I+I+ L   G    A  LF +M+ +   P+ +T+  LI  
Sbjct: 391 LDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDN 450

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                + +K ++LL +M+           + ++D L K
Sbjct: 451 LCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + IE A  ++ +M   GI  + +  NTL  GL    +++ A +L D+M  +G
Sbjct: 482 IIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEG 541

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   +   CK G I ++ ++ +T+     E+D+  Y+ LI+GLCK+ R + AL
Sbjct: 542 LQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAAL 601

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    +      Y+ +I  L+       A  LF +M E    P+  T+  +  G 
Sbjct: 602 KLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGL 661

Query: 182 IRINEPSK-VIELLHKMKEKNVMPDASIVSIVVDLL 216
            R   P K   + L +M +   +P+ S   ++ + L
Sbjct: 662 CRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGL 697



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 1/204 (0%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
           Y+EM S+GI+PDVV  NT+   L    Q   A  + +EM    VA D  T+T  ++G  +
Sbjct: 184 YTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVE 243

Query: 79  NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138
            G I  ++ L   +  + C       + LI+G CK GR+  AL             D VT
Sbjct: 244 EGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVT 303

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           +S  ++GL  +G +D A  +   M +    P+V T+ T+I+      E  +   ++++M 
Sbjct: 304 FSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMV 363

Query: 199 EKNVMPDASIV-SIVVDLLAKNEI 221
           +   +PD +   +++V L  +N++
Sbjct: 364 DSGCLPDTTTFNTLIVALCTENQL 387



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 2/184 (1%)

Query: 38  FIGLFEIHQV-ERAFKLF-DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95
           FIG +   Q+ + AF L  +++   GV A+T  Y   +  L +   I      +  +   
Sbjct: 131 FIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQ 190

Query: 96  KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
             E D+  ++ +ID LC++ +   A+ +   +    +  D  T++ ++ G   +G ++ A
Sbjct: 191 GIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAA 250

Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
             L   M E   +P  +T   LI+G+ ++      +  + +       PD    S  V+ 
Sbjct: 251 LRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNG 310

Query: 216 LAKN 219
           L +N
Sbjct: 311 LCQN 314


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 13/247 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING CK   +  A NL +  ++KG  PD+   NTL  G  +  +++ A  + D M   
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY   ++GLCK     + +E F+ +    C  +I  Y+ LI+ LCK+ ++  A
Sbjct: 463 GVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEA 522

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
           L+L   +    L+ D V++  +I G  N+G +D+A+ LF  ME+   +   V T+  +I+
Sbjct: 523 LDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMIN 582

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK------------NEISLNSLP 227
            F    +     +L H+M +K   PD+    +++D   K             EI +  +P
Sbjct: 583 AFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVP 642

Query: 228 SFTVHER 234
           S T   R
Sbjct: 643 SLTTFGR 649



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GY K  +I+ A  +  +   KG  PD   + +L IG+ +   ++ A  LF+E    G
Sbjct: 299 IIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKG 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y   I GL + G ++++++L   +       DI  Y+ +I+GLCK G +  A 
Sbjct: 359 LKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDAN 418

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L ++      + D+ T++ +I G     +MD A  +   M  + V P+VIT+ ++++G 
Sbjct: 419 NLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGL 478

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +P  V+E    + EK  +P+    +I+++ L K
Sbjct: 479 CKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCK 515



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 1   ILINGYCKNKEIEGA-------LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL 53
           I I G C+   +EGA        N   +M++KG++PD   +NT+  G  ++ +++ A ++
Sbjct: 256 IFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRI 315

Query: 54  FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
             + +  G   D  TY   I G+C++G I  ++ LF        +  I  Y+ LI GL +
Sbjct: 316 LKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQ 375

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            G +  AL+L + + +  +  D+ TY+++I+GL   G +  A++L          P++ T
Sbjct: 376 QGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFT 435

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F TLI G+ +  +    I +L  M    V PD    + +++ L K
Sbjct: 436 FNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCK 480



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 112/235 (47%), Gaps = 14/235 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  + E  +  +  ++ KG  P+++ +N L   L +  +V  A  L +E++  G
Sbjct: 474 ILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRG 533

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +  D  ++   I G C NG + E+ +LFR + +  +    +  Y+ +I+   +   +++A
Sbjct: 534 LIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMA 593

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LFH +       D  TY +MI G    G ++  +D  L   E    P++ TFG +I+ 
Sbjct: 594 QKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINC 653

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-------------SIVVDLLAKNEIS 222
               +   + + ++H M    V+P+A +               IV DLL K+ I+
Sbjct: 654 LCVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDADKKAVAAPKIIVEDLLKKSHIT 708



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           +  Y +  +++ A++++  M     +P +  +N +   L E     +A K++  M+ +G+
Sbjct: 83  MRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGI 142

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           A D  T+TI I   C+    + ++ L   +    CEL+   Y  +I G  +      A E
Sbjct: 143 APDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYE 202

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF+ + R  +   + T++ ++H L   G + +   L   + +N V PN+ TF   I G  
Sbjct: 203 LFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLC 262

Query: 183 RI----NEPSKVIE---LLHKMKEKNVMPD 205
           R        SKV+E    LHKM  K + PD
Sbjct: 263 RKGVLEGANSKVVEAENYLHKMVNKGLEPD 292



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I  +C+ K    AL L + M S+G + + V++ T+  G +E +    A++LF++M R 
Sbjct: 151 IRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRL 210

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G+     T+   +  LCK G++ E  +L  + L+   C  ++  ++  I GLC+ G LE 
Sbjct: 211 GIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCP-NLFTFNIFIQGLCRKGVLEG 269

Query: 120 -------ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
                  A    H +    L  D  TY+ +I+G    G++  A  +  D +     P+  
Sbjct: 270 ANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEF 329

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           T+ +LI G  +  +    + L  +   K + P   + + ++  L++  + L +L
Sbjct: 330 TYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKAL 383



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           + G + E+V++F  +    CE  I +Y+ +++ L + G    A +++  +    +  DV 
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVC 147

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           T++I I       +   A  L  +M       N + + T+I GF   N   +  EL +KM
Sbjct: 148 TFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKM 207

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
               + P  +  + ++ +L K
Sbjct: 208 LRLGIFPHIATFNKLMHILCK 228


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI--KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++ G C+   +  AL+ + E  +  +  + + V ++TL       + V  A +LF EM  
Sbjct: 281 IVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMAD 340

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D   Y   I GL + G +V++  +  +++    +LD +AY+ LI G C+  RL  
Sbjct: 341 QGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHE 400

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +LF  +    L  DV TY+ ++  L   G      +L  +M ++   P+V+TFGTL+H
Sbjct: 401 AHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVH 460

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G+ +  +  + +++   M E  + P+  I + ++D L K+ 
Sbjct: 461 GYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSR 501



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  +   +  A N+ + M   G K D   +N L  G     ++  A +LF+EM+  G
Sbjct: 353 MISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAG 412

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   +  LCK G      EL   +    C+  +  +  L+ G CK+G+ + AL
Sbjct: 413 LQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEAL 472

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+    +  + V Y+ +I  L    ++D A  LF +M EN V  NV T+  L+ G 
Sbjct: 473 KIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGL 532

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              N P K  EL+ +MKE+   PD   + ++++ L +
Sbjct: 533 QDKNMPEKAFELMDQMKEERCTPDYVTMDVLMEWLPE 569



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+ K +  A  L+ EM   G++PDV  +NTL   L +        +L   M  D
Sbjct: 387 ILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDD 446

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      T+   + G CK G   E++++FR++   + + +   Y+ LID LCKS  +++A
Sbjct: 447 GCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVA 506

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  +    + A+V TY+ ++ GL +    +KA +L   M+E    P+ +T   L+  
Sbjct: 507 IKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLMEW 566

Query: 181 FIRINEPSKVIELLHKMKEKN 201
              I E  ++   + +  EK 
Sbjct: 567 LPEIGETERLKCFMEQRDEKG 587



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 99/201 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +     +  A+ L+ EM  +G  PD V++ T+  GL +  ++  A  +   M++ G
Sbjct: 318 LVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAG 377

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + Y I I G C+   + E+ +LF  ++    + D+  Y+ L+  LCK+G      
Sbjct: 378 FKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVD 437

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL  ++        VVT+  ++HG    G+ D+A  +F  M E  + PN + + TLI   
Sbjct: 438 ELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFL 497

Query: 182 IRINEPSKVIELLHKMKEKNV 202
            +  E    I+L  +M+E NV
Sbjct: 498 CKSREVDVAIKLFDEMRENNV 518



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 6/211 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   +   + G   L++ M    +KPD+V +  L   L +   V  A K+ D M   G
Sbjct: 137 LLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALKVLDRMSSPG 196

Query: 62  --VAADTRTYTIFIDGLCKNGYIVESVELF--RTLRILKCELDIQAYSCLIDGLCKSGRL 117
             V AD       +DGLCK G + +++     R  ++  C  +   Y+CL D  C+ G +
Sbjct: 197 SDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDI 256

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP--NVITFG 175
           ++A ++   + +  +  +V+T + ++ GL   G++  A D F +     +    N +T+ 
Sbjct: 257 DMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYS 316

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           TL+  F+  N  +  +EL H+M ++   PDA
Sbjct: 317 TLVSAFLHCNNVALAMELFHEMADQGYPPDA 347



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +++G CK   ++ A+    E + +  G  P+ V +N L      +  ++ A ++ + M++
Sbjct: 209 VVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEK 268

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRL 117
           +GV  +  T    + GLC+ G +  +++ FR  R    E    A  YS L+        +
Sbjct: 269 EGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNV 328

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            +A+ELFH +       D V Y  MI GL   G++  A ++   M++     +   +  L
Sbjct: 329 ALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNIL 388

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I GF R     +  +L  +MK   + PD    + ++  L K
Sbjct: 389 IGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCK 429



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 4/190 (2%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           + A  L   + +    PDV   N+L   L     +    +LF  M+   V  D  TY I 
Sbjct: 113 DAASFLRDSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGIL 172

Query: 73  IDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           ++ LCK G + +++++   +     ++  DI   + ++DGLCK GRL+ A+       R 
Sbjct: 173 LNRLCKAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQ 232

Query: 131 V--LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
           V     + VTY+ +       G +D A  +   ME+  V PNVIT  T++ G  R+    
Sbjct: 233 VHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVG 292

Query: 189 KVIELLHKMK 198
             ++   + +
Sbjct: 293 AALDFFREKR 302



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           L D +     A D  T+   +  L + G +    ELF ++R    + DI  Y  L++ LC
Sbjct: 118 LRDSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLC 177

Query: 113 KSGRLEIALELFH--SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD---MEENAV 167
           K+G +  AL++    S P   + AD+V  + ++ GL   G++  A  +F+D    + +  
Sbjct: 178 KAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAI-VFVDERMRQVHGC 236

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           APN +T+  L     R+ +     +++ +M+++ V P+   ++ +V  L +
Sbjct: 237 APNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCR 287


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+  +++ A  L  EMLS+G  P +V +NT+  GL +  +V  A KL D M    
Sbjct: 266 LIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKN 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +Y   I G  + G I E+  LF  LR       +  Y+ LIDGLC+ G L++A+
Sbjct: 326 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAM 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     DV T++I++ G    G +  A +LF +M    + P+   + T I G 
Sbjct: 386 RLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGE 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +++ +PSK   +  +M  +   PD    ++ +D L K
Sbjct: 446 LKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHK 482



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+CK   +  A  L+ EML++G++PD   + T  +G  ++    +AF + +EM   
Sbjct: 405 ILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLAR 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY +FIDGL K G + E+ EL + +       D   Y+ +I     +G L  A
Sbjct: 465 GFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKA 524

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    +   VVTY+++IH     G++  A   F +M E  V PNVIT+  LI+G
Sbjct: 525 RAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 584

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             ++ +  +  +   +M+ K + P+    +I+++
Sbjct: 585 LCKVRKMDQAYKFFTEMQAKGISPNKYTYTILIN 618



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ +CK  +++ AL L  +M   G  P+ V +N L  GL    ++E+A +L  EM R G
Sbjct: 196 MLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLG 255

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I G C+ G + E+  L   +        +  Y+ ++ GLCK GR+  A 
Sbjct: 256 LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDAR 315

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L+ D+V+Y+ +I+G    G + +A  LF ++    + P+V+T+ TLI G 
Sbjct: 316 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGL 375

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227
            R+ +    + L  +M +    PD    +I+V    K    L +LP
Sbjct: 376 CRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCK----LGNLP 417



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY +   I  A  L++E+  +G+ P VV +NTL  GL  +  ++ A +L DEM + G
Sbjct: 336 LIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL--------------RI------------- 94
              D  T+TI + G CK G +  + ELF  +              RI             
Sbjct: 396 PDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAF 455

Query: 95  -LKCEL-------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++ E+       D+  Y+  IDGL K G L+ A EL   +    LV D VTY+ +IH  
Sbjct: 456 GMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAH 515

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G + KA  +FL+M    + P+V+T+  LIH +         I    +M EK V P+ 
Sbjct: 516 LMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNV 575

Query: 207 SIVSIVVDLLAK 218
              + +++ L K
Sbjct: 576 ITYNALINGLCK 587



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 114/212 (53%), Gaps = 2/212 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           ++  I+ A  +Y+ M+  GI+P VV +NT+     +  +V+ A +L  +MQ+ G   +  
Sbjct: 167 RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDV 226

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS- 126
           TY + ++GL  +G + ++ EL + +  L  E+    Y  LI G C+ G+L+ A  L    
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEM 286

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           L RG  V  +VTY+ +++GL   G++  A  L   M    + P+++++ TLI+G+ R+  
Sbjct: 287 LSRGA-VPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN 345

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +   L  +++ + ++P     + ++D L +
Sbjct: 346 IGEAFLLFAELRFRGLVPSVVTYNTLIDGLCR 377



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 1/201 (0%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI-HQVERAFKLFDEMQRDGVAA 64
           Y K   +E  L ++ +M+SKG+ PD+   N +   L +    ++ A ++++ M   G+  
Sbjct: 129 YAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRP 188

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
              TY   +D  CK G + E+++L   ++ + C  +   Y+ L++GL  SG LE A EL 
Sbjct: 189 TVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELI 248

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             + R  L     TY  +I G    GQ+D+A  L  +M      P ++T+ T+++G  + 
Sbjct: 249 QEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKW 308

Query: 185 NEPSKVIELLHKMKEKNVMPD 205
              S   +LL  M  KN+MPD
Sbjct: 309 GRVSDARKLLDVMVNKNLMPD 329



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG   + E+E A  L  EML  G++     ++ L  G  E  Q++ A +L +EM   
Sbjct: 230 VLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSR 289

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G      TY   + GLCK G + ++ +L   +       D+ +Y+ LI G  + G +  A
Sbjct: 290 GAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEA 349

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L    LV  VVTY+ +I GL   G +D A  L  +M ++   P+V TF  L+ G
Sbjct: 350 FLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRG 409

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD--ASIVSIVVDL 215
           F ++       EL  +M  + + PD  A I  IV +L
Sbjct: 410 FCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGEL 446



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ Y     ++ A+  + EM  KG+ P+V+ +N L  GL ++ ++++A+K F EMQ  
Sbjct: 545 VLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAK 604

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           G++ +  TYTI I+  C  G+  E++ L++ +     + +IQ  SC    L K
Sbjct: 605 GISPNKYTYTILINENCNLGHWQEALRLYKDM----LDREIQPDSCTHSALLK 653



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 82/178 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + I+G  K   ++ A  L  +ML  G+ PD V + ++         + +A  +F EM   
Sbjct: 475 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSK 534

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT+ I      G +  ++  F  +       ++  Y+ LI+GLCK  +++ A
Sbjct: 535 GIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQA 594

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            + F  +    +  +  TY+I+I+   N G   +A  L+ DM +  + P+  T   L+
Sbjct: 595 YKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALL 652



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +     +  A  ++ EMLSKGI P VV +  L        +++ A   F EM   G
Sbjct: 511 IIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKG 570

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   I+GLCK   + ++ + F  ++      +   Y+ LI+  C  G  + AL
Sbjct: 571 VHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEAL 630

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYND 149
            L+  +    +  D  T+S ++  L  D
Sbjct: 631 RLYKDMLDREIQPDSCTHSALLKHLNKD 658


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 111/205 (54%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           + ++ A  ++ EM+  G+ P+V  +N L  G      +E     F EM+R+G   +  TY
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTY 241

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
              ID  CK   I E+ +L R + +     ++ +Y+ +I+GLC+ G+++   E+   + +
Sbjct: 242 NTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSK 301

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
              V D VT++ +I+G  N G   +A  L  +M +N ++PNV+T+ TLI+   +    ++
Sbjct: 302 RRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNR 361

Query: 190 VIELLHKMKEKNVMPDASIVSIVVD 214
            +E L +M+++ + P+    + ++D
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLID 386



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+  +++    +  EM  +   PD V  NTL  G   +    +A  L  EM ++
Sbjct: 278 VVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TYT  I+ +CK G +  ++E    +R      + + Y+ LIDG  + G L+ A
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +        ++TY+ +I+G    G+M+ A  L  +M E    P+V+++ T+I G
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  E  K  +L  +M  K + PD +  S ++  L K
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 94/177 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C    +E A  L  EM+ +G  PDVV ++T+  G     ++E+AF+L  EM   G
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I GLCK   + E  +LF+ +  L    D   Y+ LI+  C  G L+ AL
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            L   + +     D+VTY+++I+G     +  +A  L L +      PN IT+ TLI
Sbjct: 539 RLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLI 595



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C    +E  L  + EM   G  P+VV +NT+     ++ ++  AFKL   M   
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +Y + I+GLC+ G + E+ E+   +   +   D   ++ LI+G C  G    A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  L  +VVTY+ +I+ +   G +++A +    M +  + PN  T+ TLI G
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +     +  +++ +M E    P
Sbjct: 388 FSQQGFLKQAYQIMKEMVENGFTP 411



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 107/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +   ++ A  +  EM+  G  P ++ +N L  G   + ++E A  L  EM   G
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y+  I G C+N  + ++ +L   +       D+  YS LI GLCK  RL    
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    L  D VTY+ +I+    +G +DKA  L  +M +   +P+++T+  LI+GF
Sbjct: 504 DLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + +   +   LL K+  +  +P+    + ++D
Sbjct: 564 NKQSRTKEAKRLLLKLLYEESVPNEITYNTLID 596



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 104/208 (50%), Gaps = 1/208 (0%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQRDGVAADTRTYT 70
           I  AL++ +   S G  P V+ +N +   +    Q V+ A  +F EM   GV+ +  TY 
Sbjct: 148 INKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I G C  G +   +  F  +    C  ++  Y+ +ID  CK  ++  A +L   +   
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            L  ++++Y+++I+GL  +GQM +  ++  +M +    P+ +TF TLI+G+  +    + 
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + L  +M +  + P+    + +++ + K
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCK 355



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 50/267 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C+N+E+E A  L  EM++KGI PDV  +++L  GL +  ++     LF EM   G
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I+  C  G + +++ L   +       DI  Y+ LI+G  K  R + A 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 122 ELF------HSLP-----------------------------RGVL-VADVV-------- 137
            L        S+P                             +G++  AD V        
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 138 ------TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                  Y+++IHG    G ++KA++L+ +M  +  AP+ +T   L        +  ++ 
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELN 693

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LL    +   + +A++  +++ + +K
Sbjct: 694 QLLDYTLKSCRITEAALAKVLIGINSK 720


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 116/215 (53%), Gaps = 3/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G CK  +++ A  L  +M+    +PD + +N +  G F  H  + AF+L  EM+  G
Sbjct: 263 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAG 322

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+I I GLC++G   ++ +L   +     + +   Y+ LI G C+ G + +A 
Sbjct: 323 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLAC 382

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + +  ++ D+  Y+ +I GL   G+++++   F  M+E  + PN  T+  LIHG+
Sbjct: 383 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           ++  +     +L+ +M +  + P+     I +DLL
Sbjct: 443 LKNGDLESAEQLVQRMLDTGLKPND---VIYIDLL 474



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 102/213 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C++  +E A     +M   G+ PD   +  L  GL +  +   A  L DEM   
Sbjct: 157 VLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA 216

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +   Y   IDG  + G   E+ ++ + +     + +   Y  L+ GLCK G+++ A
Sbjct: 217 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 276

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R     D +TY+++I G +       A  L  +ME   ++PNV T+  +IHG
Sbjct: 277 SLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHG 336

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +  EP K  +LL +M  K + P+A + + ++
Sbjct: 337 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 369



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 110/219 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G+ ++   + A  L SEM + GI P+V  ++ +  GL +  + E+A  L +EM   
Sbjct: 297 LIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 356

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   I G C+ G +  + E+F  +  +    D+  Y+ LI GL K GR+E +
Sbjct: 357 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 416

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F  +    L+ +  TYS +IHG   +G ++ A  L   M +  + PN + +  L+  
Sbjct: 417 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 476

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + + ++  KV      M ++ VM D  I  I++  L+ +
Sbjct: 477 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSS 515



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+    +  +E A  + SE+   G  PDV ++++L  GL +    E+AF + DEM + 
Sbjct: 507 ILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKK 566

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +   Y   IDGLCK+G I  +  +F ++       +   Y+ LIDG CK G +  A
Sbjct: 567 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 626

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L++ +    +  D   YS++  G  + G +++A  L  +M     A ++ +F  L+ G
Sbjct: 627 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDG 685

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  + ++LLH +  + ++P+A  +  ++  L++
Sbjct: 686 FCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 723



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC+   +  A  ++ +M    + PD+  +N+L  GL ++ +VE + K F +MQ  G
Sbjct: 368 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 427

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I G  KNG +  + +L + +     + +   Y  L++   KS  +E   
Sbjct: 428 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 487

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             F S L +GV++ D   Y I+IH L + G M+ A  +  ++E+N   P+V  + +LI G
Sbjct: 488 STFKSMLDQGVML-DNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISG 546

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +  K   +L +M +K V P+    + ++D L K+
Sbjct: 547 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 585



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +    + A  +  EM++ G++P+ + ++ L  GL ++ Q++RA  L  +M RD 
Sbjct: 228 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 287

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT TY + I+G  ++    ++  L   +       ++  YS +I GLC+SG  E A 
Sbjct: 288 HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 347

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +   Y+ +I G   +G +  A ++F  M +  V P++  + +LI G 
Sbjct: 348 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 407

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    +  +   +M+E+ ++P+    S ++    KN
Sbjct: 408 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 445



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 97/181 (53%), Gaps = 1/181 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ +I  A N+++ +L+KG+ P+ V + +L  G  ++  +  AF L++EM   G
Sbjct: 578 LIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATG 637

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y++   G    G + +++ L   +  L+    I +++ L+DG CK G+++  L
Sbjct: 638 ITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM-FLRGHASISSFNNLVDGFCKRGKMQETL 696

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L H +    LV + +T   +I GL   G++ + H +F+++++         F +L    
Sbjct: 697 KLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDM 756

Query: 182 I 182
           I
Sbjct: 757 I 757



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y K+  ++ A  +   M  +G+ P +   N L   L     +   +K+ + M   
Sbjct: 52  VLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 111

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  TY+  I+  CK      + ++   +R   C L+   Y+ LI GLC+SG +E A
Sbjct: 112 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 171

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                 +    LV D  TY  +I+GL    + ++A  L  +M    + PNV+ +  LI G
Sbjct: 172 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 231

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F+R     +  +++ +M    V P+
Sbjct: 232 FMREGNADEAFKMIKEMVAAGVQPN 256



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK  +++  L L   ++ +G+ P+ +    +  GL E  ++     +F E+Q+  
Sbjct: 682 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 741

Query: 62  VAADTRTYT-IFIDGL-----------------CKNGYIVESVELFRTLRILKCELDIQA 103
             +  R ++ +F+D +                 CK G + +++ L   +      +   +
Sbjct: 742 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 801

Query: 104 YSCLIDGLCKSGRLEIALELFHSL-PRGVLVADVVT 138
           Y  ++D LC+ G+L  AL L   +  RG L   +V 
Sbjct: 802 YLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA 837



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 65/152 (42%)

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           + +D   K+G + ++ E+   +R       I+  + L+  L ++  + +  ++   +   
Sbjct: 52  VLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 111

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +  DV TYS +I       + D A  + ++M E     N +T+  LI G  R     + 
Sbjct: 112 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 171

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222
                 M++  ++PD      +++ L K+  S
Sbjct: 172 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 203


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 1/207 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           I +N YC    I+ A  L  EM   GI  PD   +N +  GL + HQ++RAF    +   
Sbjct: 411 IRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHME 470

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  +  I ID  CK   +  +++LF+ +     + D   Y  LI+GL   G   +
Sbjct: 471 VGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYYL 530

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E+F  + +  +V +V  Y+IM+H L   GQ ++A  +FL M +  V+P++ITF TLI+
Sbjct: 531 AEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIY 590

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA 206
              + +   + I+L   M  + + PD+
Sbjct: 591 WLGKCSRAIEAIDLFRDMTARGIEPDS 617



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G CK  +++ A    S+ +  G   D+V  N L     +  +V  A KLF EM   G
Sbjct: 448 MLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKG 507

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + AD  TY   I+GL   GY   + E+F  +   +   ++  Y+ ++  LCK+G+ E A 
Sbjct: 508 IQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQ 567

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  + +  +  D++T++ +I+ L    +  +A DLF DM    + P+ +TF  LI G 
Sbjct: 568 KIFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISGL 627

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   + ++  E+   M E  ++ D  +   ++ +   N
Sbjct: 628 LEEGKATQAYEVWEYMLENGIILDRDVSDRLISMFKSN 665



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 15/236 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ ++  I  A  + S M + G +PDVV +N           ++ A KL +EM+  G
Sbjct: 377 LISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSG 436

Query: 62  -VAADTRTYTIFIDGLCKN-------GYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
            V  D  +Y   + GLCK        G++ + +E+     I+ C +       LID  CK
Sbjct: 437 IVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNI-------LIDAFCK 489

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           + ++  AL+LF  +    + AD VTY  +I+GLY  G    A ++F  M +  V PNV  
Sbjct: 490 AKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNL 549

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           +  ++H   +  +  +  ++  +M +K V PD    + ++  L K   ++ ++  F
Sbjct: 550 YNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLF 605



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 1/230 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I ++  CK+  +  AL     M  +G  PDVV + T+   L +  Q   A +L++EM R 
Sbjct: 271 IYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRR 330

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D     + I GLCK+  + E+ EL   +  L  EL++  Y+ LI G  +SG +  A
Sbjct: 331 GLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKA 390

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIH 179
            ++   +       DVVTY+I ++   N G + +A  L  +ME +  V P+  ++  ++ 
Sbjct: 391 FKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLK 450

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           G  + ++  +    +    E     D    +I++D   K +   ++L  F
Sbjct: 451 GLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLF 500



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 90/167 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK K++  AL L+ EM  KGI+ D V + TL  GL+ +     A ++F++M + 
Sbjct: 482 ILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKA 541

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +   Y I +  LCK G   ++ ++F  +   +   DI  ++ LI  L K  R   A
Sbjct: 542 RVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEA 601

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
           ++LF  +    +  D +T+  +I GL  +G+  +A++++  M EN +
Sbjct: 602 IDLFRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEVWEYMLENGI 648



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 3/194 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+  C+++ IE    L ++M   G  PD+   N     L + +++  A K  + M   G
Sbjct: 237 WISALCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRG 296

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  +  LC N    E+VEL+  +     + DI A   LI GLCKS +++ A 
Sbjct: 297 TNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAF 356

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    L  +V  Y+ +I G    G ++KA  +   M  N   P+V+T+   ++ +
Sbjct: 357 ELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHY 416

Query: 182 IR---INEPSKVIE 192
                I E  K+IE
Sbjct: 417 CNTGMIKEAEKLIE 430



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%)

Query: 19  YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
           YS  L KG       ++     L +  ++E   +L  +M + G   D     I++D LCK
Sbjct: 219 YSVALDKGFCLTSFTYSRWISALCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCK 278

Query: 79  NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138
           +  + ++++    + I     D+  Y+ ++  LC + +   A+EL+  + R  L  D+V 
Sbjct: 279 HNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVA 338

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
             ++I GL    ++D+A +L L M    +  NV  +  LI GF+R    +K  +++  M+
Sbjct: 339 CGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMR 398

Query: 199 EKNVMPDASIVSI 211
                PD    +I
Sbjct: 399 TNGCEPDVVTYNI 411



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 8/209 (3%)

Query: 18  LYSEMLSKGIKPDVVIHNTLF----IGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
           L SE L +     V +H +L+     G     + +     FDEM   G       Y  FI
Sbjct: 144 LLSEFLERVRSQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFI 203

Query: 74  DGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
             L KN    + VE + ++ + K  C L    YS  I  LC+S R+E+   L   + +  
Sbjct: 204 GVLVKNC-CFDLVEKYYSVALDKGFC-LTSFTYSRWISALCQSERIELVERLLADMDKFG 261

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
              D+   +I +  L    ++  A     +M      P+V+T+ T++       + ++ +
Sbjct: 262 CFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAV 321

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           EL  +M  + + PD     +++  L K++
Sbjct: 322 ELWEEMVRRGLKPDIVACGVLIFGLCKSD 350


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE---IHQVERAFKLFDEM 57
           I+INGY    +I+ +L L   M   GI P + + N L  G  E    H+V++ FKL   M
Sbjct: 206 IVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKL---M 262

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  GV  D +T+ + ++  C  G I E+  +   ++    + D+ AYS L+ G  + GR 
Sbjct: 263 ENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRP 322

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           E      + +    L  +V+TY+ +I G  +  QMD A  +F +M   +V PN+ TF TL
Sbjct: 323 EEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTL 382

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           I GF     P +  E+L  +++    PD   + +V D
Sbjct: 383 IWGFKEARWPRRAEEILEYIRKAGFTPDLECIELVAD 419



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  +  +K  E A N+ S M + G+ PDVV +NTL     ++ +   A  +  EMQ  
Sbjct: 136 MLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNV 195

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  + RTY I I+G    G I ES+ L   +++      I  ++ L+ G  +S +    
Sbjct: 196 YLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKV 255

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    +  DV T+ ++++   + G +D+A  + L M+E  + P+V+ +  L+ G
Sbjct: 256 DKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKG 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + R   P +    L+ M ++N+ P+    + V+
Sbjct: 316 YSRQGRPEEGEAFLNIMIDENLKPNVITYTTVI 348



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           L+NGYC+  +++ A  L  EM  +G       +NTL  G     Q E A KL  EM +D 
Sbjct: 66  LLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDV 125

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + RT+ + I     +    ++  +   +R      D+ +Y+ L     K G+   A
Sbjct: 126 NSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDA 185

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  +  TY I+I+G    GQ+D++  L   M+ + ++P +  F  L+ G
Sbjct: 186 ENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKG 245

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    +P KV ++   M+   V PD     ++++
Sbjct: 246 YSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMN 279



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 87/190 (45%), Gaps = 1/190 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G +P    +  L   L    ++     L  +M+ D V  D   +   ++G C+ G + E+
Sbjct: 20  GHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEA 79

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMIH 144
             L   ++   C L   +Y+ LI G    G+ E A++L   + + V    +  T++++I 
Sbjct: 80  EALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIK 139

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
              +D   +KA ++   M    V P+V+++ TL   F ++ +P     ++ +M+   + P
Sbjct: 140 AWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRP 199

Query: 205 DASIVSIVVD 214
           +     IV++
Sbjct: 200 NERTYGIVIN 209



 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 94/202 (46%), Gaps = 2/202 (0%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           EG L L  +M    + PD +  NTL  G  E  +++ A  L  EM+  G    T +Y   
Sbjct: 43  EGPL-LLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTL 101

Query: 73  IDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
           I G   +G   E+++L + + + +  + + + ++ LI         E A  +   +    
Sbjct: 102 IKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAG 161

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  DVV+Y+ +       G+   A ++  +M+   + PN  T+G +I+G+I   +  + +
Sbjct: 162 VGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESL 221

Query: 192 ELLHKMKEKNVMPDASIVSIVV 213
            L+ +MK   + P  ++ + +V
Sbjct: 222 RLIERMKMDGISPTIAVFNHLV 243



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           ++RDG      TYT+ +  L  +G + E   L + +       D   ++ L++G C++G+
Sbjct: 16  LRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGK 75

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-PNVITFG 175
           ++ A  L   +          +Y+ +I G   DGQ ++A  L  +M ++  + PN  TF 
Sbjct: 76  MKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFN 135

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            LI  +     P K   ++  M+   V PD    + +  L AK
Sbjct: 136 MLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAK 178



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
           + Y+ L+  L   GRL     L   +    ++ D + ++ +++G    G+M +A  L L+
Sbjct: 26  ETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEAEALVLE 85

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAKNE 220
           M+E        ++ TLI G+    +P + ++LL +M K+ N  P+    ++++   A ++
Sbjct: 86  MKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDK 145


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG  K   +  A   ++EMLSKG+KPD   +NT  +G  +I     AF + +EM   
Sbjct: 430 ILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAA 489

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY +F+  LC+ G   E+ +L   +       D   Y+ +I+G  K+G L  A
Sbjct: 490 GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKA 549

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F+ +    +   VVTY+++IH       +D A   F  M E +V  NVIT+  +I+G
Sbjct: 550 REVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIING 609

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                   +  +   +M+EK ++P+    +I+++
Sbjct: 610 LCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN 643



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ YCK   ++ AL L SEM  +G  P+ V +N L  GL +  ++E+A  L +EM   G
Sbjct: 221 MLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I+G C+ G  VE+ +L   +   +    +  Y+ L+ GLCK  ++    
Sbjct: 281 LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVR 340

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + +     D+V+++ +++G    G + +A  LF +++   + P VIT+ TLIHG 
Sbjct: 341 LRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGL 400

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                    + L  +M ++ + PD    +I+V+
Sbjct: 401 CMWGYLDAALRLKKEMTDQGLFPDIFTYTILVN 433



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 108/220 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+   I  A  L+ E+  + + P V+ +NTL  GL     ++ A +L  EM   G
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQG 420

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYTI ++G  K GY+  +   F  +     + D  AY+  I G  K     +A 
Sbjct: 421 LFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAF 480

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       DV+TY++ +H L   G  ++A DL  +M  + + P+ +T+ ++I+GF
Sbjct: 481 SMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGF 540

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++     K  E+ ++M  K V P     ++++   A  ++
Sbjct: 541 VKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQM 580



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G  K  +   A ++  EML+ G  PDV+ +N     L +    E A  L + M  DG+
Sbjct: 467 IVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL 526

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  TYT  I+G  KNG++ ++ E+F  +        +  Y+ LI        L++A  
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
            F  +    + A+V+TY+ +I+GL    +MD+A+  F +MEE  + PN  ++  LI+   
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    + + L  +M ++ + PD+   S+ +  L ++
Sbjct: 647 NMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRD 683



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+      A +L  EM+++   P +  +NTL  GL +  QV      F +M +  
Sbjct: 291 LINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSK 350

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  ++   + G C+ G I E+  LF  L+       +  Y+ LI GLC  G L+ AL
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D+ TY+I+++G +  G +  A   F +M    + P+   + T I G 
Sbjct: 411 RLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGE 470

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++I + S    +  +M      PD    ++ V  L +
Sbjct: 471 MKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 96/205 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  K  E+E A  L  EML+ G+      +N L  G  +      AF L +EM   
Sbjct: 255 VLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  TY   + GLCK   +      F  +   K   DI +++ L+ G C++G +  A
Sbjct: 315 RAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEA 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L    LV  V+TY+ +IHGL   G +D A  L  +M +  + P++ T+  L++G
Sbjct: 375 FLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNG 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             ++   S      ++M  K + PD
Sbjct: 435 CFKLGYVSMARGFFNEMLSKGLKPD 459



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +  A N+Y  M   GIKP VV +NT+     +  +V++A +L  EMQ  G   +  TY +
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPR 129
            ++GL K G + ++  L     +L   L++ AY+   LI+G C+ G    A +L   +  
Sbjct: 256 LVNGLSKKGELEQAKGLIE--EMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVN 313

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                 + TY+ +++GL    Q+      F DM ++   P++++F +L++G+ R    S+
Sbjct: 314 RRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISE 373

Query: 190 VIELLHKMKEKNVMP 204
              L  ++K ++++P
Sbjct: 374 AFLLFDELKCRDLVP 388



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 88/188 (46%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++ +M+  G+ PDV   N +   L + + + +A  ++  M++ G+     TY   +D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K G + +++EL   ++   C  +   Y+ L++GL K G LE A  L   +    L     
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY+ +I+G    G   +A DL  +M      P + T+ TL++G  +  + + V      M
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 198 KEKNVMPD 205
            +    PD
Sbjct: 347 LKSKFTPD 354



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 61/111 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +   + ++ A   +S+ML K +  +V+ +N +  GL    +++ A+K FDEM+  
Sbjct: 570 VLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEK 629

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G+  +  +YTI I+  C  GY  E++ L+R +   K + D   +S  +  L
Sbjct: 630 GILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNL 680



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 82/166 (49%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +FD+M R+G+  D +     +  L     + ++  ++  +     +  +  Y+ ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K GR++ ALEL   +       + VTY+++++GL   G++++A  L  +M  + +  +  
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T+  LI+GF +     +  +L+ +M  +   P  S  + ++  L K
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 55/99 (55%)

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L +F  + R  L+ DV   + ++  L ++  + KA +++  ME+  + P V+T+ T++ 
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +     + +ELL +M+E+   P+    +++V+ L+K
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSK 262


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G     ++  AL+L+  M+  G +P+VV +NTL  GL     +E A ++ D+MQR G
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+I IDG  K+G +V + E +  +    C  ++  Y+C++D LCK+   + A 
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       + +T++  I GL  +G+++ A  L   M+ +   PN+ T+  L+   
Sbjct: 440 SLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R+N+  +   L  +++ +N+ P+
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPN 523



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   IE A+ L  EM+  G+ P+VV ++ +   L     VE AF LF +M   G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             A+  T+T  I G    G + E+++L++ +    CE ++ AY+ LI GLC +G LE AL
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + R   + +V TYSI+I G    G +  A + +  M  +   PNV+T+  ++   
Sbjct: 370 QVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVL 429

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + +   +   L+ KM  +   P+    +  +  L  N
Sbjct: 430 CKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGN 467



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 30/251 (11%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVV---------------------------- 32
           IL+   CKN  ++ A  L+ EM +KG  PD V                            
Sbjct: 184 ILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPS 243

Query: 33  --IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
             ++N L  G+ +  ++E A KL  EM  +GV  +  +Y+  I+ LC +G +  +  LF 
Sbjct: 244 VPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFA 303

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            + +  C+ +I  ++ LI G    G+L  AL+L+  + +     +VV Y+ +IHGL ++G
Sbjct: 304 QMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNG 363

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            +++A  +   M+ +   PNV T+  LI GF +  +     E  ++M      P+    +
Sbjct: 364 SLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYT 423

Query: 211 IVVDLLAKNEI 221
            +VD+L KN +
Sbjct: 424 CMVDVLCKNSM 434



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 112/208 (53%), Gaps = 5/208 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ K+ ++ GA   ++ M+S G +P+VV +  +   L +    ++A  L ++M  +
Sbjct: 389 ILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE 448

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T T+  FI GLC NG +  +++L   ++   C  +I  Y+ L+D L +  + E A
Sbjct: 449 GCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA 508

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    L  ++VTY+ +++G    G M +A  LF        AP+ IT+ T+IH 
Sbjct: 509 FGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHA 568

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPD 205
           +    ++   ++++E +  MKE +  PD
Sbjct: 569 YCKQGKVKIAAQLVERVSSMKEWH--PD 594



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C N  +E AL +  +M   G  P+V  ++ L  G  +   +  A + ++ M   G
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  +D LCKN    ++  L   + +  C  +   ++  I GLC +GR+E A+
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAM 474

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +     + ++ TY+ ++  L+   + ++A  LF ++E   + PN++T+ T+++GF
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGF 534

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R     + ++L  K   +   PD+   + ++    K
Sbjct: 535 SRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  C +  +E A  L+++M  +G   ++     L  G F   ++  A  L+  M +DG
Sbjct: 285 IINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   I GLC NG + E++++   ++   C  ++  YS LIDG  KSG L  A 
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGAS 404

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E ++ +       +VVTY+ M+  L  +   D+A+ L   M      PN +TF T I G 
Sbjct: 405 ETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGL 464

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                    ++LL +M+    +P+ +  + ++D L +
Sbjct: 465 CGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 65/283 (22%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +INGY +    E AL ++  +   G KP V I+N L   L   ++ +    L+  M++DG
Sbjct: 115 IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDG 174

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD--------------------- 100
           +  +  TY I +  LCKN  +  + +LF  +    C  D                     
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR 234

Query: 101 ---------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH------- 144
                    +  Y+ LIDG+CK GR+E+A++L   +    +  +VV+YS +I+       
Sbjct: 235 ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 145 ----------------------------GLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
                                       G +  G++ +A DL+  M ++   PNV+ + T
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           LIHG        + +++  +M+    +P+ +  SI++D  AK+
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKS 397



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 3/182 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G C N  +E A+ L   M   G  P++  +N L   LF +++ E AF LF E++   
Sbjct: 460 FIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARN 519

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   + G  + G + E+++LF    +     D   Y+ +I   CK G+++IA 
Sbjct: 520 LQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAA 579

Query: 122 ELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
           +L   +        D++TY+ +I G  N   +++A   FLD   N  + PN  T+  L+ 
Sbjct: 580 QLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAM-AFLDKAINQGICPNFATWNALVR 638

Query: 180 GF 181
            F
Sbjct: 639 CF 640



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +  +M+ DG+      +   I+G  + G   +++++F  +    C+  ++ Y+ L+D L 
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
              + ++   L+ ++ +  L+ +V TY+I++  L  + ++D AH LF++M      P+ +
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T+ T++    +  +     EL  + K     P   + + ++D + K
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCK 256


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK    E A  + S M S G+KP+VV +NT+  G+    + E+A +L  EM +  
Sbjct: 272 IIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKN 331

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I +D  C+NG +   +EL   +    C  D+  Y+ +I+G CK G ++ A+
Sbjct: 332 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAV 391

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  ++P      + ++Y+I++ GL +  +   A +L   M +    PN +TF T+I+  
Sbjct: 392 MLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFL 451

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IELL +M      PD    S V+D L K
Sbjct: 452 CKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGK 488



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   I+ A+ L   M S G KP+ + +  +  GL    +   A +L   M + G
Sbjct: 377 VINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQG 436

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   I+ LCK G + +++EL + + +  C  D+ +YS +IDGL K+G+ E AL
Sbjct: 437 CLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEAL 496

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +    +  +V+TYS M   L  +G++DK   +F ++++  +  + + +  +I   
Sbjct: 497 ELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSL 556

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E    I+ L  M     MP+ S  + ++  LA 
Sbjct: 557 CKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLAS 593



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ +C+N  ++  + L  +ML  G  PDV+ + T+  G  +   ++ A  L   M   
Sbjct: 341 ILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSC 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T +YTI + GLC     V++ EL   +    C  +   ++ +I+ LCK G +E A
Sbjct: 401 GCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL   +       D+++YS +I GL   G+ ++A +L   M    + PNVIT+ ++   
Sbjct: 461 IELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFA 520

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R     KVI++   +++  +  DA + + V+  L K
Sbjct: 521 LAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCK 558



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    I  AL +  EM S+   P   +++ +            A ++ + +   G
Sbjct: 122 VVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKG 181

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DT    + I+ +C  G + E +E+ R L +  CE DI +Y+ ++ GLC + R     
Sbjct: 182 STLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVE 241

Query: 122 EL----------FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           EL             + +     D+  Y+ +I G+  +G  + A+++   M    + PNV
Sbjct: 242 ELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNV 301

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + + T++ G    +   K  ELL +M +KN   D    +I+VD   +N
Sbjct: 302 VCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQN 349



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 10/230 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--- 57
           ++IN  C    ++  L +  ++   G + D+V +N +  GL    +     +L DEM   
Sbjct: 191 LVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKV 250

Query: 58  -------QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
                   + G   D R Y   IDG+CK G+   + E+   +     + ++  Y+ ++ G
Sbjct: 251 HEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKG 310

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +C + R E A EL   + +     D VT++I++     +G +D+  +L   M E+   P+
Sbjct: 311 ICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPD 370

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           VIT+ T+I+GF +     + + LL  M      P+    +IV+  L   E
Sbjct: 371 VITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTE 420



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   C++     AL +   + +KG   D    N +   + +   V+   ++  ++   
Sbjct: 156 VIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLF 215

Query: 61  GVAADTRTYTIFIDGLC--KNGYIVESV--------ELFRTLRILKCELDIQAYSCLIDG 110
           G  AD  +Y   + GLC  K    VE +        E    +    C  DI+ Y+ +IDG
Sbjct: 216 GCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDG 275

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +CK G  E+A E+   +P   L  +VV Y+ ++ G+ +  + +KA +L  +M +     +
Sbjct: 276 ICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLD 335

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +TF  L+  F +     +VIELL +M E   MPD    + V++   K
Sbjct: 336 DVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCK 383



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 94/199 (47%)

Query: 20  SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79
           S+M   G  PD+ ++ T+  G+ +    E A ++   M   G+  +   Y   + G+C  
Sbjct: 255 SQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSA 314

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
               ++ EL   +    C LD   ++ L+D  C++G ++  +EL   +     + DV+TY
Sbjct: 315 DRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITY 374

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           + +I+G   +G +D+A  L  +M      PN I++  ++ G           EL+ +M +
Sbjct: 375 TTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQ 434

Query: 200 KNVMPDASIVSIVVDLLAK 218
           +  +P+    + +++ L K
Sbjct: 435 QGCLPNPVTFNTIINFLCK 453



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 86/181 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C  +    A  L S M+ +G  P+ V  NT+   L +   VE+A +L  +M  +
Sbjct: 411 IVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVN 470

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y+  IDGL K G   E++EL   +       ++  YS +   L + GR++  
Sbjct: 471 GCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKV 530

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++F ++    + +D V Y+ +I  L    + D A D    M  N   PN  T+  LI G
Sbjct: 531 IQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKG 590

Query: 181 F 181
            
Sbjct: 591 L 591



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 82/161 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +E A+ L  +ML  G  PD++ ++T+  GL +  + E A +L + M   G
Sbjct: 447 IINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKG 506

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+     L + G I + +++F  ++      D   Y+ +I  LCK    ++A+
Sbjct: 507 ITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAI 566

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +    +     + +  TY+ +I GL ++G + +A DL  ++
Sbjct: 567 DFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSEL 607



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ GYC+  ++E A  L + +    + P+   +  +  GL    ++  A  + DEM    
Sbjct: 90  MVAGYCRVGQVEAARRLAAAV---PVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRS 146

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y + I+  C++G    ++ +   L      LD    + +I+ +C  G ++  L
Sbjct: 147 CVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGL 206

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL-----YND-----GQMDKAHDLFLDMEENAVAPNV 171
           E+   LP     AD+V+Y+ ++ GL     + D      +M K H+    M ++   P++
Sbjct: 207 EMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDI 266

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + T+I G  +        E+L +M    + P+
Sbjct: 267 RMYATIIDGICKEGHHEVANEILSRMPSYGLKPN 300


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  +I   L L  EM +KGI P VV +  +   L     + +   L  EM+  
Sbjct: 121 VLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRAR 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ + + Y   I+ LCK     ++ ++   +   +   D+  ++ +I G C+ G +  A
Sbjct: 181 GLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L     R  L  + ++Y+ +IHG    G+   A DL ++M      P++IT G LIHG
Sbjct: 241 LKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHG 300

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +   + +  + +  KM E+ VMPDA+I ++++  L K  +
Sbjct: 301 LVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRM 341



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK + +  A NL  EML + ++PD  I+ TL  G     ++  A K+F+ M+ +
Sbjct: 331 VLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFME-E 389

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D   Y + I G CK G + E+V    ++R   C  D   Y+ L+DG  K G +  +
Sbjct: 390 KACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISAS 449

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +     ++ TY+ +I G  N G    A DLF  M+   + PNV+ +  LI  
Sbjct: 450 LRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGS 509

Query: 181 FIRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEISLNSLPSFT--VHERQEE 237
             + ++  +       M   +  P DA++  +V  L+      +NS  S T   HE+   
Sbjct: 510 LFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSAL 569

Query: 238 VD 239
           +D
Sbjct: 570 LD 571



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 1/204 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   E   A +L  EM+ +G  PD++    L  GL    QV  A  + ++M    
Sbjct: 262 LIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQ 321

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y + I GLCK   +  +  L   +   K + D   Y+ LIDG  +S +L  A 
Sbjct: 322 VMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDAR 381

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       D+V Y++MI G    G M +A      M +    P+  T+ TL+ G+
Sbjct: 382 KIFEFMEEKA-CPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGY 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  + S  + LL  M ++   P+
Sbjct: 441 AKKGDISASLRLLCDMMKRRCKPN 464



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           +L  EM ++G+ P+V I+NT+   L +     +A  + ++M +     D  T+   I G 
Sbjct: 172 SLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGF 231

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C+ G + E+++L R       E +  +Y+ LI G C  G   +A +L   +       D+
Sbjct: 232 CREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDM 291

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           +T   +IHGL   GQ++ A  +   M E  V P+   +  LI G  +    S    LL +
Sbjct: 292 ITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEE 351

Query: 197 MKEKNVMPDASIVSIVVDLLAKNE 220
           M E+ V PD  I + ++D   +++
Sbjct: 352 MLEQKVQPDKFIYTTLIDGFVRSD 375



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 79/180 (43%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G  PD    N L   L E  + ERA  L+ EM      AD  +  + + GLC  G + E 
Sbjct: 41  GALPDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEG 100

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             L        C      Y+ LIDG C+ G +   L L   +    ++  VVTY  +IH 
Sbjct: 101 RGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHW 160

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G + K   L  +M    ++PNV  + T+I+   +    S+  ++L++M +    PD
Sbjct: 161 LGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPD 220



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 15/203 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY K  +I  +L L  +M+ +  KP++  + +L  G   I     A  LF +MQ +G
Sbjct: 436 LVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEG 495

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL--CKSGRL-- 117
           +  +   YT+ I  L K   ++++   F  + +  C  +      L++GL  C+ G +  
Sbjct: 496 LFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNS 555

Query: 118 -----------EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
                         L++F  L    L   +  Y+ +I  L     + KA DL   M    
Sbjct: 556 NRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKG 615

Query: 167 VAPNVITFGTLIHGFIRINEPSK 189
             P+ ITF +L++GF    E  K
Sbjct: 616 CLPDPITFLSLLYGFSSAGESGK 638


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 1/206 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK   IE A  +   M  KG  PDVV HN +        +++ A K+F+E+ +D 
Sbjct: 50  VISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDN 109

Query: 62  VAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               T  TYTI I+     G I E+++L   +     E D   Y+ +  GLCK G+++ A
Sbjct: 110 NCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRA 169

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E   +L       DV+TY+I++  L N G+ D+      ++      PNV+T+  LI  
Sbjct: 170 FEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISS 229

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
             R  +  + + L+  MKEK + PDA
Sbjct: 230 LCRDGKIEESVNLVKVMKEKGLTPDA 255



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++  G CK  +++ A      + S+G KPDV+ +N L   L    + +   K   E+   
Sbjct: 155 VITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSR 214

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY+I I  LC++G I ESV L + ++      D   Y  LI   C+ G+L++A
Sbjct: 215 GCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMA 274

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E    +     + D+V Y+ ++  L  +G  D A ++F  ++E    PNV ++ T++  
Sbjct: 275 IEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSA 334

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                +  + + ++ +M  K + PD    + ++  L ++
Sbjct: 335 LWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRD 373



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  C++ +IE ++NL   M  KG+ PD   ++ L        +++ A +  D M  D
Sbjct: 225 ILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICD 284

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   +  LCKNG    +VE+F  L  + C  ++ +Y+ ++  L  SG    A
Sbjct: 285 GFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRA 344

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   +    +  DV+TY+ +I  L  DG +D+A  L  DM      PN++++ T++ G
Sbjct: 345 LGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLG 404

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             + +     IE+L  M E    P+ +  +++++
Sbjct: 405 LCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIE 438



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+  ++ I+ A  +   +L K  KPDV  +N +  G  + +++E A  + D M+R G
Sbjct: 16  LIKGFFNSRNIDKATRVMG-ILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKG 74

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
            + D  T+ I I   C  G I  ++++F  L +   C+  +  Y+ LI+     G ++ A
Sbjct: 75  FSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEA 134

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   +    L  D  TY+++  GL  +G++D+A +    +      P+VIT+  L+  
Sbjct: 135 LKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRA 194

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +   +  +  + + ++  +   P+    SI++  L ++
Sbjct: 195 LLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRD 233


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y +ML  G  PDV+ +N L    + + +++R  +LFDEM RDG + D+ TY I +  L 
Sbjct: 241 VYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILG 300

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K    + ++     ++ +  +  +  Y+ LIDGL ++G LE        + +     DVV
Sbjct: 301 KGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVV 360

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y++MI G    G++DKA ++F +M      PNV T+ ++I G     E  +   LL +M
Sbjct: 361 CYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEM 420

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
           + +   P+  + S +V  L K
Sbjct: 421 ESRGCNPNFVVYSTLVSYLRK 441



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 84/176 (47%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           E  + +  ++L DEM +DG     RT+ + I    + G   ++V  F   +         
Sbjct: 161 ECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKH 220

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +Y+ +++ L    + ++   ++  +       DV+TY+I++   Y  G+MD+   LF +M
Sbjct: 221 SYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEM 280

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +P+  T+  L+H   + N+P   +  L+ MKE  + P     + ++D L++
Sbjct: 281 ARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSR 336



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++   K  +   AL   + M   GI P V+ + TL  GL     +E      DEM + 
Sbjct: 294 ILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKA 353

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   YT+ I G   +G + ++ E+FR + +     ++  Y+ +I GLC +G    A
Sbjct: 354 GCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREA 413

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             L   +       + V YS ++  L   G++ +A  +  +M
Sbjct: 414 CWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREM 455


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 97/176 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K    + A+NL++ M+  GI  ++  +  L       H++  A+ +F EM+  G
Sbjct: 642 LISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERG 701

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  +YT  I G C N  + ++  LF  +    C  ++  Y+C+IDG CKS R+++A 
Sbjct: 702 LCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLAT 761

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
            +F  + R  ++ DVVTY+++I   +  G  D+AH L+  M++  V P+ IT   L
Sbjct: 762 WVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDITHNVL 817



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+CK  E+  AL +  EM S GI PDV  ++ L         V +   L +EM+   
Sbjct: 397 VIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQ 456

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     +YT  I GLCK   +  +V++F ++    C+ D   Y  LIDG C  G ++ A+
Sbjct: 457 IKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAI 516

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI--------- 172
           +L   +    LV    +   +I G Y  G  D+A ++F  M  + + P+ I         
Sbjct: 517 KLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGS 576

Query: 173 --------------------------TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                                     ++  +I+   +   P + +ELL +M ++NV+P  
Sbjct: 577 CRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSV 636

Query: 207 SIVSIVVDLLAKNE 220
              S ++   AK  
Sbjct: 637 VNYSTLISGFAKQS 650



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 39/253 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +  N  +E AL+++S     G++PD+   N L   L E ++VE   ++F+E++  
Sbjct: 252 VLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDR 311

Query: 61  GVAADTRTYTI---------------------------------------FIDGLCKNGY 81
           G + +  TYTI                                       +I GLCK G 
Sbjct: 312 GPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGN 371

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +  ++ L R L      L+  +++ +I G CK G +  AL++   +    ++ DV +YSI
Sbjct: 372 VEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSI 431

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I+     G + K  DL  +ME + + P+++++ +LIHG  + N     +++ H +   +
Sbjct: 432 LINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASS 491

Query: 202 VMPDASIVSIVVD 214
              D+++   ++D
Sbjct: 492 CKYDSTVYETLID 504



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   +++ A+ L  EM+   + P      +L  G +++   ++A ++F+ M RDG
Sbjct: 502 LIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDG 561

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  DT      +DG C+ GY  E++ L    +     L+  +Y+ +I  LCK G  E AL
Sbjct: 562 IWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERAL 621

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  ++  VV YS +I G        +A +LF  M +  +  N+ T+  L+  F
Sbjct: 622 ELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIF 681

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
              ++  +   +  +MKE+ +  D  S  +++V      E+
Sbjct: 682 SHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREM 722



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK    E AL L   ML + + P VV ++TL  G  +    +RA  LF  M + G
Sbjct: 607 IIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVG 666

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYTI +     +  + E+  +F+ ++     LD  +Y+ LI G C +  ++ A 
Sbjct: 667 ITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAW 726

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R     +V+TY+ +I G     ++D A  +F  M  ++V P+V+T+  LI  +
Sbjct: 727 ALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWY 786

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L   MK+K V+PD
Sbjct: 787 HKHGYFDQAHKLYDVMKDKGVLPD 810



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 41/256 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GY K    + AL +++ ML  GI PD +  N +  G       + A  L ++ Q  G
Sbjct: 537 LIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHG 596

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
              +  +Y   I  LCK GY   ++EL    R+LK  +   +  YS LI G  K    + 
Sbjct: 597 FNLNPHSYNAIIYKLCKEGYPERALELLP--RMLKRNVLPSVVNYSTLISGFAKQSNFKR 654

Query: 120 ALELFHSL------------------------------------PRGVLVADVVTYSIMI 143
           A+ LF  +                                     RG L  D ++Y+ +I
Sbjct: 655 AVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERG-LCLDQISYTTLI 713

Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            G  N+ +M KA  LF +M     +PNVIT+  +I GF + N       +  KM   +V+
Sbjct: 714 VGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVI 773

Query: 204 PDASIVSIVVDLLAKN 219
           PD    ++++D   K+
Sbjct: 774 PDVVTYTVLIDWYHKH 789



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 101/212 (47%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I+G CK   +E AL L   +       +    N +  G  +  +V  A ++ +EM+  G+
Sbjct: 363 IHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGI 422

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  +Y+I I+  C  G +++ ++L   +   + +  I +Y+ LI GLCK   L+ A++
Sbjct: 423 LPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVD 482

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           +FHS+       D   Y  +I G    G MD A  L  +M  N + P   +  +LI G+ 
Sbjct: 483 IFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYY 542

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++    + +E+ + M    + PD    + ++D
Sbjct: 543 KLGLFDQALEVFNAMLRDGIWPDTIACNYILD 574



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 4/210 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK----GIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
           I++N YC +   +  +   + +L K    G KP VV ++T   GL ++  VE A  L   
Sbjct: 322 IMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRN 381

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           +       ++ ++   I G CK G + E++++   ++      D+ +YS LI+  C  G 
Sbjct: 382 LHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGD 441

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +   L+L   +    +   +V+Y+ +IHGL     +  A D+F  +  ++   +   + T
Sbjct: 442 VMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYET 501

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           LI GF    +    I+LL +M    ++P A
Sbjct: 502 LIDGFCMQGDMDSAIKLLEEMICNELVPTA 531



 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           ++R GV  D     + I     N  +  ++++F   + +  E DI+  + L+  L ++ R
Sbjct: 243 VERSGVVFD-----VLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANR 297

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYN----DGQMDKAHDLFLDMEENAVAPNVI 172
           +E    +F  L       ++ TY+IM++   +    D  M +A  +   +  +   P V+
Sbjct: 298 VEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVV 357

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           T+ T IHG  ++      + L+  +   N
Sbjct: 358 TYSTYIHGLCKVGNVEAALMLIRNLHYTN 386


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 109/213 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C + ++  A  L+++M  +G  PDV  ++ L  GL    QV+ A  + DEM   
Sbjct: 243 ILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNK 302

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   ++ LC+   + E+  L   ++++ C  D+  Y+ +I G C+ GR   A
Sbjct: 303 GYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDA 362

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +P    + + ++Y  +++GL N+G+ D+A D   +M  N   P++  +  LI G
Sbjct: 363 CQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITG 422

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                +  +  E+L  M ++ + P  S  S+++
Sbjct: 423 LCNEGKVGEACEVLVMMTKQTLAPHESTWSVLL 455



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 98/203 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+  + +ML  G +P     N L I L E   +E A  LF ++   G++ +TRTY I I 
Sbjct: 187 AIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIR 246

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             C +  +  +  LF  +    C  D++ YS L+ GLC+  +++ AL +   +     V 
Sbjct: 247 AHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVP 306

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D +TY+ +++ L     + +A+ L   M+     P+VI + T+I GF R        ++L
Sbjct: 307 DALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQIL 366

Query: 195 HKMKEKNVMPDASIVSIVVDLLA 217
             M E   +P+A     +V+ L 
Sbjct: 367 RDMPENGCLPNALSYRTLVNGLC 389



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 35/188 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C+  +++ AL +  EML+KG  PD + +NTL   L     +  A++L  +M+  
Sbjct: 278 ILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVM 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------ELD-- 100
           G   D   Y   I G C+ G  +++ ++ R +    C                  + D  
Sbjct: 338 GCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEA 397

Query: 101 ---------------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                          I  Y  LI GLC  G++  A E+   + +  L     T+S+++  
Sbjct: 398 KDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMR 457

Query: 146 LYNDGQMD 153
           +  D Q +
Sbjct: 458 ICEDSQTE 465



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G K     ++TL   L    Q +    L  +M++DG       +   I+   + G   E+
Sbjct: 128 GFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEA 187

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           ++ F  +     E   + ++ L+  L +   LE AL LF  L    +  +  TY+I+I  
Sbjct: 188 IKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRA 247

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             +  ++  A+ LF  M +    P+V T+  L+ G  R ++    + +L +M  K  +PD
Sbjct: 248 HCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPD 307

Query: 206 ASIVSIVVDLLAK 218
           A   + +++ L +
Sbjct: 308 ALTYNTLLNSLCR 320


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 115/217 (52%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
           LI  Y K    + ++ +++ M S G+ P VV  N+L + L +  +   A  +FDEM    
Sbjct: 162 LIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTY 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  DT T+ I I G CKN  + E    F+ +   KC+ D+  Y+ L+DGLC++G++ IA
Sbjct: 222 GVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIA 281

Query: 121 LELFHSLPRGV--LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             + + + +    L  DVVTY+ ++ G     ++D+A  +F +M    + PN IT+ TLI
Sbjct: 282 HNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLI 341

Query: 179 HGFIRINEPSKVIELLH-KMKEKNVMPDASIVSIVVD 214
            G   + +  K+ ++    +     +PD   ++ +++
Sbjct: 342 KGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMN 378



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 10/228 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD-EMQRD 60
           L+ GYC   EI+ AL ++ EM+SKG+KP+ + +NTL  GL E+ ++++  ++F+  +   
Sbjct: 305 LVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGG 364

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT T    ++  C  G + +++E+F  + +L    D   YS LI  LC+ G  E A
Sbjct: 365 GFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERA 424

Query: 121 LELFHSLP-RGVLVAD------VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            +LF  L  + +L+ D      V  Y  M   L  +G+  KA  +F  + +     + ++
Sbjct: 425 EQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQ-DPLS 483

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNE 220
           F  LI G  R        ELL  M  ++ +PD      ++D LL K E
Sbjct: 484 FKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGE 531



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
           L+N +C    +  AL ++ +M+   ++PD   ++ L   L +    ERA +LFDE+    
Sbjct: 376 LMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKE 435

Query: 60  -----DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
                DG       Y    + LC+NG   ++  +FR L + +   D  ++  LI G C+ 
Sbjct: 436 ILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQL-MKRGTQDPLSFKILIKGHCRE 494

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G  E   EL   + R   V D+ TY  +I GL   G+   A+     M +++  P   TF
Sbjct: 495 GTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTF 554

Query: 175 GTLI 178
            +++
Sbjct: 555 HSIL 558



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM--Q 58
           ILI G+CKN  ++     + EM      PD+V +NTL  GL    +V  A  + + M  +
Sbjct: 232 ILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKK 291

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
              +  D  TYT  + G C    I E++ +F  +     + +   Y+ LI GLC+  +++
Sbjct: 292 STNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKID 351

Query: 119 IALELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              ++F  +L  G  + D  T + +++   N G ++ A ++F  M    V P+  T+  L
Sbjct: 352 KIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVL 411

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVM 203
           I    +     +  +L  ++ EK ++
Sbjct: 412 IRNLCQRGNFERAEQLFDELSEKEIL 437



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 7/181 (3%)

Query: 47  VERAFKLFDEMQRDG-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           V R F    + + +G V  + R +   I    K G   ESV++F +++ +     +  ++
Sbjct: 136 VARNFLFSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFN 195

Query: 106 CLIDGLCKSGRLEIALELFHSL--PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
            L+  L K GR  +A  +F  +    GV   D  T++I+I G   +  +D+    F +M 
Sbjct: 196 SLLLILLKRGRTNMAQSVFDEMLSTYGV-TPDTYTFNILIRGFCKNSMVDEGFRFFKEMS 254

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM--KEKNVMPD-ASIVSIVVDLLAKNE 220
                P+++T+ TL+ G  R  + +    +++ M  K  N+ PD  +  ++V     K+E
Sbjct: 255 RFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHE 314

Query: 221 I 221
           I
Sbjct: 315 I 315



 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C+    E    L   ML +   PD+  + +L  GL +  +   A++  ++M + 
Sbjct: 486 ILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKS 545

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +T T+   +  L   G   ES      +   K   +I   +  +  L  SG  + A
Sbjct: 546 SHVPETSTFHSILARLLAKGCAHESARFIMLMLEGKIRQNINLSTHTVRLLFGSGLRDKA 605

Query: 121 LELFHSLPRGVLVAD--VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            ++      G+L A+  VV    +I  L ++ +   AH L L   E     ++    T+I
Sbjct: 606 FKIV-----GLLYANGYVVDMEELIGFLSHNRKFLLAHKLLLFCLEKHQNVDIDMCDTVI 660

Query: 179 HGFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNEI 221
            G  ++   S+   L +++ EK N  P   + ++ V L A+  +
Sbjct: 661 EGLCKMKRHSEAFGLYYELVEKGNNQPLRCLENLRVALEARGRL 704


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 1/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSE-MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LING+C+  EI    +L  E ML KG+ PDV+ + ++  G  ++  ++ A +LFDEM   
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ + IDG  K G +  ++ ++  + +L C  D+  ++ LIDG C+ G +   
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L+  +    L  +V TY+++I+ L  + ++ +A +    ++ + V P    +  +I G
Sbjct: 375 LKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDG 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +  +  +   ++ +M+EK   PD    +I++
Sbjct: 435 FCKAGKVDEANFIVAEMQEKKCRPDKITFTILI 467



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  +++ A  L+ EM+S GIKP+    N L  G  ++  +  A  ++++M   G
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLG 350

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  IDG C+ G + + ++L+  +++     ++  Y+ LI+ LCK  R+  A 
Sbjct: 351 CLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR 410

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                L    +V     Y+ +I G    G++D+A+ +  +M+E    P+ ITF  LI G 
Sbjct: 411 NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGN 470

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + I   +KM E N +PD   ++ ++  L K
Sbjct: 471 CMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 2/238 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K   ++ A+ L+ E L     PDV   N L  GL  I ++++AF+ F  M   G
Sbjct: 185 LLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFG 244

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIA 120
              D  +Y   I+G C+   I +  +L +   ++K    D+  Y+ +I G CK G ++ A
Sbjct: 245 CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAA 304

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    +  +  T++++I G    G M  A  ++  M      P+V+TF +LI G
Sbjct: 305 SELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           + R  E ++ ++L  +MK +N+ P+    +++++ L K E  +    +F  H +  EV
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCK-ENRIREARNFLRHLKSSEV 421



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 3/216 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y +  +++ A N  +E+   GIK    ++N L   L + + V+ A  LF E    
Sbjct: 149 LLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEP 208

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  ++ I I GLC+ G I ++ E F+ +    C  DI +Y+ LI+G C+   +   
Sbjct: 209 YFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKG 268

Query: 121 LELFHS--LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            +L     L +GV   DV+TY+ +I G    G M  A +LF +M  + + PN  TF  LI
Sbjct: 269 HDLLKEDMLIKGV-SPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLI 327

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            GF ++      + +  KM     +PD    + ++D
Sbjct: 328 DGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLID 363



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 100/200 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+ K   +  A+ +Y +ML  G  PDVV   +L  G     +V +  KL++EM+  
Sbjct: 325 VLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR 384

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ +  TY + I+ LCK   I E+    R L+  +       Y+ +IDG CK+G+++ A
Sbjct: 385 NLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEA 444

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D +T++I+I G    G+M +A   F  M E    P+ IT  +LI  
Sbjct: 445 NFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISC 504

Query: 181 FIRINEPSKVIELLHKMKEK 200
            ++   P++  ++     +K
Sbjct: 505 LLKAGMPNEASQIKQAALQK 524



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CK    + A  ++  M S GI PD  I   L      + +++ A    +E+   
Sbjct: 114 LLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCY 173

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   ++ L K   + E+V LFR         D+ +++ LI GLC+ G ++ A
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEENAVAPNVITFGTLIH 179
            E F ++       D+V+Y+ +I+G     ++ K HDL   DM    V+P+VIT+ ++I 
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G+ ++ +     EL  +M    + P+    ++++D   K
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGK 332



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 6/177 (3%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           D+++ N   +GL +  ++     +FD M+ DG+  D+    + +    + G +  +    
Sbjct: 113 DLLMRNLCKVGLNDSAKI-----VFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFL 167

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             +     ++    Y+ L++ L K   ++ A+ LF        V DV +++I+I GL   
Sbjct: 168 NEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRI 227

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK-MKEKNVMPD 205
           G++DKA + F +M      P+++++ TLI+GF R+NE SK  +LL + M  K V PD
Sbjct: 228 GEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 128/240 (53%), Gaps = 1/240 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+N++++ A  ++  M+  G  P+ V ++TL  GL    ++  A  + +EM   G
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYT+ I  LC  G + +++ L R++    C   +Q Y+ +I GL ++G++E+A+
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAI 357

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++H + +  LV + VTY+ +I+ L  +G+   A  +F  ME +    N  T+  +I G 
Sbjct: 358 GMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGL 417

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
             +++  K + + +KM +    P   +  +++V+ L +  ++  +   + + E   E DE
Sbjct: 418 FGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDE 477



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 107/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  C       AL ++  M   G   +   +N +  GLF +  +E+A  +F++M +DG
Sbjct: 378 LINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDG 437

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I    K GY+  +      ++   CE D + Y  LI G CK G+L+ A 
Sbjct: 438 PSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSAT 497

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F+ + +  +  +  TY+ MI G   +G++D A  LF  MEEN  + ++ T+  +I G 
Sbjct: 498 SFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGL 557

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N  S+  +   KM E+ + P+    + +++ L KN
Sbjct: 558 SKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKN 595



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 99/178 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK  +++ A+ +++++    + PD   + +L +G     ++++AF++FD M +DG
Sbjct: 203 MINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDG 262

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++ TY+  I+GLC  G I E++++   +     E  +  Y+  I  LC  GR++ A+
Sbjct: 263 CNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAI 322

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L  S+ +      V TY+ +I GL+  G+M+ A  ++  M +  + PN +T+  LI+
Sbjct: 323 NLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALIN 380



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 110/206 (53%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +  A N+Y+++ S G+KP ++  NT+   L +  +V+ A  +F+++ +  +  D  TYT 
Sbjct: 178 VTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTS 237

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I G C+N  + ++ E+F  +    C  +   YS LI+GLC  GR+  A+++   +    
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +   V TY++ I  L + G++D A +L   M +   +P+V T+  +I G  R  +    I
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAI 357

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLA 217
            + HKM ++ ++P+    + +++ L 
Sbjct: 358 GMYHKMLKEGLVPNTVTYNALINELC 383



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 7/226 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  +I+ AL+L+  M   G    +  +N +  GL + ++   A K   +M   G
Sbjct: 518 MIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQG 577

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T TYT  I+GLCKN     + ++F  +    C  +   Y+ LI GLC+ G+++ A 
Sbjct: 578 LQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA- 636

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                L        + TYS ++ GL  +G+ ++A  L  +M+E  ++P++  + +L+   
Sbjct: 637 ---ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAH 693

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL---AKNEISLN 224
            +  +    +E+ + M  K   P   I  +++  L   ++ E +LN
Sbjct: 694 CKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALN 739



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 113/277 (40%), Gaps = 74/277 (26%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFI---------------------- 39
           +I G     +IE A+ ++++ML  G  P VV +NTL +                      
Sbjct: 413 IIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESN 472

Query: 40  -------------GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                        G  +  +++ A   F EM + G++ +  TYT  IDG CK G I  ++
Sbjct: 473 CEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVAL 532

Query: 87  ELFRTLRILKCELDIQ-----------------------------------AYSCLIDGL 111
            LF  +    C   I+                                    Y+ LI+GL
Sbjct: 533 SLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGL 592

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           CK+    +A ++FH + +   + +  TY+ +I+GL  +G++D A  L     EN   P +
Sbjct: 593 CKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERL----TENGCEPTI 648

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            T+ TL+ G  R    ++  +L+  MKEK + P   I
Sbjct: 649 DTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEI 685



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 88/184 (47%)

Query: 35  NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           NTL + L +   V  A  ++ ++   GV     T+   I+ LCK G + E+V +F  +  
Sbjct: 166 NTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQ 225

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
                D   Y+ LI G C++ +L+ A E+F  + +     + VTYS +I+GL N+G++ +
Sbjct: 226 FDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGE 285

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A D+  +M E  + P V T+   I     I      I L+  M +K   P     + ++ 
Sbjct: 286 AMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIIS 345

Query: 215 LLAK 218
            L +
Sbjct: 346 GLFR 349



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 101/217 (46%), Gaps = 4/217 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CKN     A  ++ EM  K   P+   + +L  GL +  +V+ A    + +  +G
Sbjct: 588 LINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTENG 643

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY+  + GLC+ G   E+ +L   ++       ++ Y  L+   CKS +++ AL
Sbjct: 644 CEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCAL 703

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F+ +        +  Y ++I  L    + ++A ++F  + +     ++I +  L+ G 
Sbjct: 704 EIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGL 763

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +    ++ L+ M+ +N  P      I+   L+K
Sbjct: 764 LQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSK 800


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+N  ++ A  ++  M+  G  P+ V ++TL  GL    ++E A  + +EM + G
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYTI +  LC  G   E+VEL   ++   C  +IQ ++ LI GL + G+ EIA+
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAI 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL---------------------------YND----- 149
            L+H +    LV   VTY+ +I+ L                           YN+     
Sbjct: 363 GLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCF 422

Query: 150 ---GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G + KA  +F  M +   +PNVIT+ TLI+G+ +    +  + LL  MK   + PDA
Sbjct: 423 CLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDA 482

Query: 207 SIVSIVVDLLAK 218
              + ++   ++
Sbjct: 483 WTYTELISGFSR 494



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  ++ + E A+ LY +ML+ G+ P  V +N L   L    + E AF +F  M   G
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T+TY   I   C  G I +++ +F  +       ++  Y+ LI G CK G L  A+
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D  TY+ +I G    G+++ A  LF  M E+ ++PN +T+  +I G+
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEIS 222
             + +    + L  KM E   +P +   ++++   +K N IS
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSIS 569



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  C     E A  ++  MLS G  P    +N +      +  +++A  +FD+M + G
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   I G CK G +  ++ L   ++    + D   Y+ LI G  + G+LE A 
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  + VTY+ +I G +N  ++D A  LF  M E+   P+  T+  +I GF
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N  S+      KM ++ ++P+    +  +D L +N
Sbjct: 563 SKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 102/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  +C   +I+ A+ ++ +ML  G  P+V+ +NTL  G  +   +  A +L + M+ +G
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNG 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I G  + G +  +  LF  +       +   Y+ +IDG     +++ AL
Sbjct: 478 LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDAL 537

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +     +    TY++MI G      + +A +    M +  + PNVIT+ + I G 
Sbjct: 538 ALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGL 597

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R        ++ H+M+++N  P+    S ++
Sbjct: 598 CRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI 629



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A ++Y +ML+ GI+P ++  NT+   L +  +V+ A  +   + R     +  TYT  I 
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLIL 245

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+N  +  +  +F  +    C+ +   YS LI+GLC  GRLE A+++   + +  +  
Sbjct: 246 GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V TY+I +  L + G   +A +L   M++    PN+ TF  LI G  R  +    I L 
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 195 HKMKEKNVMPDASIVSIVVDLLA------------KNEISLNSLPS 228
           HKM    ++P     + +++ L             K  +S  SLPS
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPS 411



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY    +++ AL L+ +M+  G  P    +N +  G  + + +  A     +M + G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT FIDGLC+NG    + ++F  +       ++  YS LI GLC+ GR E A 
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA- 641

Query: 122 ELFHSLPRGVLVA---DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           E+++ L R        +V TY+ ++ GL  +G+  +A  L + M++  + P+   +  L+
Sbjct: 642 EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALL 701

Query: 179 HG 180
            G
Sbjct: 702 IG 703



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 4/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+ K   I  A N   +M+ +G+ P+V+ + +   GL    +   AFK+F EM++ 
Sbjct: 557 VMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK---CELDIQAYSCLIDGLCKSGRL 117
               +  TY+  I GLC+ G   E  E++  L  L    CE ++  Y+ L+ GLC  GR 
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGR-AEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +L  S+ +  L      Y  ++ G   + +++ A ++F  M+      ++  +  L
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKAL 735

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I    + N   +   +   M EK+   D    ++++D L K
Sbjct: 736 ICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLK 776



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNK-EIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           IL+   C+N+ E++      SE+ SK      +    TL I L +   V+ A  ++ +M 
Sbjct: 135 ILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKML 194

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+     T+   I+ LCK G + E+  +   +       +   Y+ LI G C++  L+
Sbjct: 195 NSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLD 254

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +A  +F  + +     + VTYS +I+GL ++G++++A D+  +M +  + P V T+   +
Sbjct: 255 LAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPL 314

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                    S+ +ELL KMK++  +P+    + ++  L+++
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRD 355



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 2/202 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA--FKLFDEMQR 59
            I+G C+N     A  ++ EM  +   P++  +++L  GL +  + E A  + L   +  
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  TYT  + GLC  G   E+ +L  +++    +   + Y  L+ G CK+ ++E 
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVES 712

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL +F+S+        +  Y  +I  L  +  +++A  +F  M E     + + +  L+ 
Sbjct: 713 ALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLD 772

Query: 180 GFIRINEPSKVIELLHKMKEKN 201
           G ++  E    ++LLH M+ +N
Sbjct: 773 GLLKEGETDLCLKLLHVMESRN 794



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 2/175 (1%)

Query: 2   LINGYCKNKEIEGA--LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           LI G C+    E A   NL + +   G +P+V  + TL  GL    +   A +L   MQ+
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK 687

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+      Y   + G CKN  +  ++ +F ++  L  +L +  Y  LI  LCK   +E 
Sbjct: 688 KGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEE 747

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           A  +F ++      +D V +++++ GL  +G+ D    L   ME      N  T+
Sbjct: 748 AQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTY 802



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C       A  L   M  KG++P   I+  L IG  +  +VE A  +F  M   G
Sbjct: 665 LVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLG 724

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y   I  LCK  +I E+  +F+T+       D  A++ L+DGL K G  ++ L
Sbjct: 725 FQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCL 784

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL 146
           +L H +       +  TY ++   L
Sbjct: 785 KLLHVMESRNCTLNFQTYVMLAREL 809


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 108/216 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++N YC+   + GA+ ++  M  KG +P+V  +N +  G     +V +A  L D+M+  
Sbjct: 305 IVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMREC 364

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY + I G C +G+I  +  L R +       D   Y+ LID LCK+G+++ A
Sbjct: 365 GVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEA 424

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L    +  + VT++ +I+GL   G+ D A     +M     AP+  T+   I  
Sbjct: 425 CSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIEN 484

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +     + +  + +M +K+V P     +IV++ L
Sbjct: 485 LCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRL 520



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 3/243 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +C+ ++ E A  + +EM   G+ P VV    +        ++  A ++F+ M+  G
Sbjct: 271 LVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKG 330

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   + G C  G + +++ L   +R    E D+  Y+ LI G C  G +  A 
Sbjct: 331 CEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAF 390

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L AD  TY+++I  L   G++D+A  LF  +E   + PN +TF T+I+G 
Sbjct: 391 RLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER-QEEVDE 240
            +  +       L  M      PD    S  ++ L K + S   L  F + E  Q++V  
Sbjct: 451 CKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGL--FFIDEMLQKDVKP 508

Query: 241 SNV 243
           S V
Sbjct: 509 STV 511



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 4/212 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+ +++E A +L+ +M  +G   D V +  L  G  E  +++ A +LF EM +  
Sbjct: 170 LILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ-- 227

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   + GLC  G   E + + + ++ L      +AY+ L+D  C+  + E A 
Sbjct: 228 --PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAE 285

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +    L+  VVT +I+++    +G+M  A  +F  M      PNV T+  ++ GF
Sbjct: 286 KILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGF 345

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               +  K + LL +M+E  V PD    ++++
Sbjct: 346 CNAGKVYKAMALLDQMRECGVEPDVVTYNLLI 377



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+C   ++  A+ L  +M   G++PDVV +N L  G      +  AF+L   M+ +G
Sbjct: 341 IVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNG 400

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF-----RTLRI-------------------LKC 97
           +AAD  TY + ID LCK G + E+  LF     R +R                    + C
Sbjct: 401 LAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVAC 460

Query: 98  EL-----------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D   YS  I+ LCK+   +  L     + +  +    V Y+I+I+ L
Sbjct: 461 TFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRL 520

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIELLHKMKEKNVM 203
           +N+     A  ++  M     +P+V+T+ T +  +    R++E   V+    +MK+   +
Sbjct: 521 FNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVT---EMKKCRTI 577

Query: 204 PDASIVSIVVD 214
            DA   + ++D
Sbjct: 578 VDAMAYNTLID 588



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 5/171 (2%)

Query: 51  FKLFDEMQRDGVAADT-RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
            +LF  M R    A T  TY   I  LC+   +  +      +       D   ++ LI 
Sbjct: 113 LRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C++ +LE+A +LF  +P      D V+Y+ +I G    G++D+A +LF +M +    P
Sbjct: 173 GYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ----P 228

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           ++ T   L+ G        + + +L KMKE    P     + +VDL  + +
Sbjct: 229 DMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQ 279



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 5/204 (2%)

Query: 16  LNLYSEMLSKGIK-PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           L L++ M       P    +N L   L     +  A +    M R G   D  T+   I 
Sbjct: 113 LRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+   +  + +LF  +       D  +Y+ LI+G C++GR++ ALELF    R +   
Sbjct: 173 GYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELF----REMTQP 228

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D+ T++ ++ GL + G+ ++   +   M+E    P    +  L+  + R  +  +  ++L
Sbjct: 229 DMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKIL 288

Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
           ++M +  +MP     +IVV+   +
Sbjct: 289 NEMFDSGLMPCVVTCTIVVNAYCR 312



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 16/233 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I   CK K  +  L    EML K +KP  V +  +   LF       A +++ +M   G
Sbjct: 481 FIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQG 540

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TYT  +   C  G + E+  +   ++  +  +D  AY+ LIDG    G+ + A+
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAV 600

Query: 122 ELFHSLPRGVLVADVVTYSIMIH----------------GLYNDGQMDKAHDLFLDMEEN 165
            +   +     + +  T+ I++                  ++   ++    +LF  M++N
Sbjct: 601 TILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKN 660

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +V  +  T+ +++ GF       +V  L+  MKE+N+  +  I + +V+   K
Sbjct: 661 SVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCK 713



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 76/170 (44%)

Query: 51  FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           F+LF+ M+++ V +  RTY   ++G  +   + E   L   ++     L+   Y+ L++ 
Sbjct: 651 FELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNC 710

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK      A  L  S+     + +++ Y  ++ GL  +GQ D+A ++F          +
Sbjct: 711 FCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTD 770

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            I +  +I GFIR        +++  +++    P     +++ + L   E
Sbjct: 771 EIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAMLTEELPTRE 820


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 35/240 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+N  ++ A  ++  M+  G  P+ V ++TL  GL    ++E A  + +EM + G
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYTI +  LC  G   E+VEL   ++   C  +IQ ++ LI GL + G+ EIA+
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAI 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL---------------------------YND----- 149
            L+H +    LV   VTY+ +I+ L                           YN+     
Sbjct: 363 GLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCF 422

Query: 150 ---GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G + KA  +F  M +   +PNVIT+ TLI+G+ +    +  + LL  MK   + PDA
Sbjct: 423 CLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDA 482



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  ++ + E A+ LY +ML+ G+ P  V +N L   L    + E AF +F  M   G
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               T+TY   I   C  G I +++ +F  +       ++  Y+ LI G CK G L  A+
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D  TY+ +I G    G+++ A  LF  M E+ ++PN +T+  +I G+
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-NEIS 222
             + +    + L  KM E   +P +   ++++   +K N IS
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSIS 569



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  C     E A  ++  MLS G  P    +N +      +  +++A  +FD+M + G
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY   I G CK G +  ++ L   ++    + D   Y+ LI G  + G+LE A 
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +  + VTY+ +I G +N  ++D A  LF  M E+   P+  T+  +I GF
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + N  S+      KM ++ ++P+    +  +D L +N
Sbjct: 563 SKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 102/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  +C   +I+ A+ ++ +ML  G  P+V+ +NTL  G  +   +  A +L + M+ +G
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNG 477

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I G  + G +  +  LF  +       +   Y+ +IDG     +++ AL
Sbjct: 478 LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDAL 537

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +     +    TY++MI G      + +A +    M +  + PNVIT+ + I G 
Sbjct: 538 ALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGL 597

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R        ++ H+M+++N  P+    S ++
Sbjct: 598 CRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI 629



 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A ++Y +ML+ GI+P ++  NT+   L +  +V+ A  +   + R     +  TYT  I 
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLIL 245

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G C+N  +  +  +F  +    C+ +   YS LI+GLC  GRLE A+++   + +  +  
Sbjct: 246 GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            V TY+I +  L + G   +A +L   M++    PN+ TF  LI G  R  +    I L 
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 195 HKMKEKNVMPDASIVSIVVDLLA------------KNEISLNSLPS 228
           HKM    ++P     + +++ L             K  +S  SLPS
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPS 411



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY    +++ AL L+ +M+  G  P    +N +  G  + + +  A     +M + G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT FIDGLC+NG    + ++F  +       ++  YS LI GLC+ GR E A 
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA- 641

Query: 122 ELFHSLPRGVLVA---DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           E+++ L R        +V TY+ ++ GL  +G+  +A  L + M++  + P+   +  L+
Sbjct: 642 EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALL 701

Query: 179 HG 180
            G
Sbjct: 702 IG 703



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 4/221 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G+ K   I  A N   +M+ +G+ P+V+ + +   GL    +   AFK+F EM++ 
Sbjct: 557 VMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK---CELDIQAYSCLIDGLCKSGRL 117
               +  TY+  I GLC+ G   E  E++  L  L    CE ++  Y+ L+ GLC  GR 
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGR-AEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A +L  S+ +  L      Y  ++ G   + +++ A ++F  M+      ++  +  L
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKAL 735

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           I    + N   +   +   M EK+   D  + ++++D L K
Sbjct: 736 ICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLK 776



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 1   ILINGYCKNK-EIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           IL+   C+N+ E++      SE+ SK      +    TL I L +   V+ A  ++ +M 
Sbjct: 135 ILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKML 194

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+     T+   I+ LCK G + E+  +   +       +   Y+ LI G C++  L+
Sbjct: 195 NSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLD 254

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           +A  +F  + +     + VTYS +I+GL ++G++++A D+  +M +  + P V T+   +
Sbjct: 255 LAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPL 314

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                    S+ +ELL KMK++  +P+    + ++  L+++
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRD 355



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 2/202 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA--FKLFDEMQR 59
            I+G C+N     A  ++ EM  +   P++  +++L  GL +  + E A  + L   +  
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  TYT  + GLC  G   E+ +L  +++    +   + Y  L+ G CK+ ++E 
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVES 712

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL +F+S+        +  Y  +I  L  +  +++A  +F  M E     + + +  L+ 
Sbjct: 713 ALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLD 772

Query: 180 GFIRINEPSKVIELLHKMKEKN 201
           G ++  E    ++LLH M+ +N
Sbjct: 773 GLLKEGETDLCLKLLHVMESRN 794



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 2/175 (1%)

Query: 2   LINGYCKNKEIEGA--LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           LI G C+    E A   NL + +   G +P+V  + TL  GL    +   A +L   MQ+
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK 687

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+      Y   + G CKN  +  ++ +F ++  L  +L +  Y  LI  LCK   +E 
Sbjct: 688 KGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEE 747

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           A  +F ++      +D V +++++ GL  +G+ D    L   ME      N  T+
Sbjct: 748 AQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTY 802



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C       A  L   M  KG++P   I+  L IG  +  +VE A  +F  M   G
Sbjct: 665 LVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLG 724

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                  Y   I  LCK  +I E+  +F+T+       D   ++ L+DGL K G  ++ L
Sbjct: 725 FQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCL 784

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL 146
           +L H +       +  TY ++   L
Sbjct: 785 KLLHVMESRNCTLNFQTYVMLAREL 809


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 35/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
           L++GYC+  ++  A  L  EML  GI P VV +NT+  GL                    
Sbjct: 408 LLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERG 467

Query: 42  ---------------FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                          F++   +RA  L+ E+   G    T  +   I GLCK G ++E+ 
Sbjct: 468 VTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAG 527

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +F  ++ L    D   Y  L DG CK+G ++ A ++   + R  + A +  Y+ +I GL
Sbjct: 528 AVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGL 587

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
           +   +++   DL ++M+   ++PNV+T+GTLI G+    +  K   L  +M E+   P+ 
Sbjct: 588 FKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNV 647

Query: 207 SIVSIVVDLLAKNE 220
            + S +V  L +++
Sbjct: 648 VVCSKIVSSLYRDD 661



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ + K  + + A+ L+ E+L +G     V  NT+  GL ++ ++  A  +FD M+  G
Sbjct: 478 MLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELG 537

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY    DG CKNG + E+ ++   +        I+ Y+ LIDGL K  +L    
Sbjct: 538 LSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVT 597

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +VVTY  +I G  ++ ++DKA  L+ +M E    PNV+    ++   
Sbjct: 598 DLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSL 657

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            R +  S+   +L KM + +++   ++ +   D L KN+++L +
Sbjct: 658 YRDDRISEATVILDKMLDFDIL---AVHNKCSDKLVKNDLTLEA 698



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 11/219 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL---FIGLFEIHQVERAFKLFDEM 57
           I++N +C+   ++ A+ +  +M+ +G++P+VV +N L   ++G  +   VER  +L  E 
Sbjct: 231 IVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSE- 289

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL---DIQAYSCLIDGLCKS 114
              GV+ +  T T+ + G CK G + E+ +L R +   + EL   D + Y  L+DG C+ 
Sbjct: 290 --RGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVE--EDELLVVDERVYGVLVDGYCQM 345

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR+E A+ +   + R  L  ++V  + +I G    GQ+ +A  +F+ M +  + P+  ++
Sbjct: 346 GRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSY 405

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            TL+ G+ R  + SK   L  +M    + P     + V+
Sbjct: 406 NTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVI 444



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C  ++++ A +LY EM+ +G  P+VV+ + +   L+   ++  A  + D+M    
Sbjct: 618 LISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFD 677

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR---ILKCELDIQAYSCLIDGLCKSGRLE 118
           + A    +    D L KN   +E+ ++  +L    I     +   Y+  IDGLCKSG+L+
Sbjct: 678 ILA---VHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLD 734

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   L     + D  TY  +IH     G +D+A  L  +M E  + PN+  +  LI
Sbjct: 735 EARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALI 794

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +G  ++    +   L +K+ +K ++P+A   +I++    +
Sbjct: 795 NGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCR 834



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY    + EG   +   M  +G+  +VV    L  G  +  +++ A KL  E++ D 
Sbjct: 267 LVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDE 326

Query: 62  V-AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           +   D R Y + +DG C+ G + ++V +   +  +  ++++   + LI G CK G++  A
Sbjct: 327 LLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEA 386

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F  +    L  D  +Y+ ++ G   +G++ KA  L  +M  + + P V+T+ T+I G
Sbjct: 387 ERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKG 446

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +      + L H M E+ V P+      ++D   K
Sbjct: 447 LVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFK 484



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 109/235 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++GYC+   +E A+ +  EML  G+K ++VI NTL  G  ++ QV  A ++F  M   
Sbjct: 337 VLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDW 396

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  +Y   +DG C+ G + ++  L   +        +  Y+ +I GL   G  + A
Sbjct: 397 NLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDA 456

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L+H +    +  + ++   M+   +  G  D+A  L+ ++       + + F T+I G
Sbjct: 457 LHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISG 516

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
             ++ +  +   +  +MKE  + PD      + D   KN     +     V ERQ
Sbjct: 517 LCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQ 571



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L+ GYCK  +++ A  L  E+    +   D  ++  L  G  ++ ++E A ++ DEM R
Sbjct: 301 MLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLR 360

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  +       I G CK G + E+  +F  +     + D  +Y+ L+DG C+ G++  
Sbjct: 361 VGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSK 420

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  L   +    +   VVTY+ +I GL + G  D A  L+  M E  V PN I+  T++ 
Sbjct: 421 AFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLD 480

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            F ++ +  + + L  ++  +         + ++  L K
Sbjct: 481 CFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCK 519



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +GYCKN  ++ A  +   M  + +   + ++N+L  GLF+I ++     L  EMQ  G
Sbjct: 548 LSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRG 607

Query: 62  VAADTRTYTIFIDGLC----------------KNGYIVESV-------ELFRTLRILKC- 97
           ++ +  TY   I G C                + G+    V        L+R  RI +  
Sbjct: 608 LSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEAT 667

Query: 98  -------ELDIQA-YSCLIDGLCKSGRLEIALELFHSLPRGVL---VADVVTYSIMIHGL 146
                  + DI A ++   D L K+     A ++  SL +  +   +++ + Y+I I GL
Sbjct: 668 VILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGL 727

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D+A  +   +      P+  T+ TLIH         +  +L  +M EK ++P+ 
Sbjct: 728 CKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNI 787

Query: 207 SIVSIVVDLLAK 218
           +I + +++ L K
Sbjct: 788 TIYNALINGLCK 799



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 35/172 (20%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I+G CK+ +++ A ++ S ++S+G  PD   + TL         V+ AFKL DEM   
Sbjct: 722 IAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEK 781

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   I+GLCK G I                                   + A
Sbjct: 782 GLIPNITIYNALINGLCKLGNI-----------------------------------DRA 806

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
             LF+ L +  LV + VTY+I+I      G +DKA  L   M E  ++  +I
Sbjct: 807 QRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREKMTEEGISTRII 858



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 33  IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           + + L     E    + A  +FDEM R G     R+ +  +  L + G    +V +F  +
Sbjct: 158 VFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQI 217

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                  D+   S +++  C+ GR+++A+E+   + +  L  +VVTY+ +++G    G  
Sbjct: 218 VGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDF 277

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM-PDASIVSI 211
           +    +   M E  V+ NV+T   L+ G+ +  +  +  +LL +++E  ++  D  +  +
Sbjct: 278 EGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGV 337

Query: 212 VVD 214
           +VD
Sbjct: 338 LVD 340



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  + +    + AL ++ EM   G  P +   + L   L +  +   A  +FD++   
Sbjct: 161 MLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGT 220

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D    +I ++  C+ G +  ++E+   +     E ++  Y+ L++G    G  E  
Sbjct: 221 GIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGV 280

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIH 179
             +   +    +  +VVT ++++ G    G+MD+A  L  ++EE+  +  +   +G L+ 
Sbjct: 281 ERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVD 340

Query: 180 GFIRINEPSKVIELLHKM 197
           G+ ++      + +  +M
Sbjct: 341 GYCQMGRMEDAVRIRDEM 358


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 12/234 (5%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           ++G  K +E++ AL L+ ++ ++G  PDV+ +N L  GL +  ++  A  L  EM+  G+
Sbjct: 471 LDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGL 530

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIAL 121
                TY   IDGLCK  ++ E++ LF ++ I K  E ++  YS LI+GLC +GR + AL
Sbjct: 531 VPSAVTYNTLIDGLCKTDHLEEAM-LFLSMMIEKEREPNVITYSTLINGLCNAGRPDDAL 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L++ + R       + Y   IHGL N G+ ++A     +MEE  + P+   +  L++ F
Sbjct: 590 VLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAF 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL-NSLPSFTVHER 234
           +  +      E+L +M +K   P         DL  KN IS+ N++  F+   R
Sbjct: 650 LVDSNQPLAFEILQEMVDKGKFP---------DLHDKNHISVRNAILKFSEDAR 694



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 111/220 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING  K  +++ A+ L+ +M   G KPD++++N L  GL   ++++ +  L  EM+  
Sbjct: 329 IVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEES 388

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+   + T       LC+   I  ++ L + +RI      I+  + L+  LCK G+   A
Sbjct: 389 GIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEA 448

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    +       D+V YS  + GL    ++D+A  LF D+      P+VI +  LI G
Sbjct: 449 CKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKG 508

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +    ++   LLH+M+EK ++P A   + ++D L K +
Sbjct: 509 LCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTD 548



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 106/216 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C +  ++ +  L  EM   GI+P    +N +F  L   H +  A  L  +M+  G
Sbjct: 365 LIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHG 424

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                +  T  +  LCK+G  VE+ +    +     + DI AYS  +DGL K   ++ AL
Sbjct: 425 HVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQAL 484

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +       DV+ Y+I+I GL    ++ +A +L  +MEE  + P+ +T+ TLI G 
Sbjct: 485 KLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGL 544

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            + +   + +  L  M EK   P+    S +++ L 
Sbjct: 545 CKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLC 580



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 120/304 (39%), Gaps = 84/304 (27%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDV----------------------------- 31
           ++I G C NK+++ AL LYSEM    I+PDV                             
Sbjct: 210 VIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDP 269

Query: 32  ----VIHNTLFIGLFEIHQVERAFKLFDEMQ-----RDG-----------VAADTRTYTI 71
               +++N++   L +   V +A+ L   +       DG           V  ++ T++I
Sbjct: 270 KASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSI 329

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I+GL K G +  +V LFR +  + C+ D+  Y+ LIDGLC S RL+ +  L   +    
Sbjct: 330 VINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESG 389

Query: 132 LVADVVTYSIM---------------------IHG--------------LYNDGQMDKAH 156
           +     T + +                     IHG              L   G+  +A 
Sbjct: 390 IEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEAC 449

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
              +DM E    P+++ +   + G I+I E  + ++L   +  +   PD    +I++  L
Sbjct: 450 KFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGL 509

Query: 217 AKNE 220
            K +
Sbjct: 510 CKTQ 513



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 49/267 (18%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  + K  +++ A  L   M  K ++ +     +L  G  +  +V++A  LFD+M++ 
Sbjct: 140 ILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKS 199

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ------------------ 102
           G   D   Y + I GLC N  + +++ L+  ++  K + D++                  
Sbjct: 200 GFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCF 259

Query: 103 ---------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD------------ 135
                           Y+ +++ L  +G +  A  L  ++  G  + D            
Sbjct: 260 FEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAM 319

Query: 136 ----VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                 T+SI+I+GL   G +D A  LF DM      P+++ +  LI G    N   +  
Sbjct: 320 VPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESC 379

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
            LL +M+E  + P +   + +   L +
Sbjct: 380 GLLQEMEESGIEPTSFTNNCIFGCLCR 406



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 2/210 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G CK + I  A NL  EM  KG+ P  V +NTL  GL +   +E A      M   
Sbjct: 504 ILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEK 563

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY+  I+GLC  G   +++ L+  +    C     AY   I GL   GR   A
Sbjct: 564 EREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEA 623

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG--TLI 178
           L     +    +  D   Y  +++    D     A ++  +M +    P++      ++ 
Sbjct: 624 LVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDLHDKNHISVR 683

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           +  ++ +E ++    +  +  K  +P AS+
Sbjct: 684 NAILKFSEDARTSSSIKNLLAKGSIPSASL 713



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 89/171 (52%), Gaps = 6/171 (3%)

Query: 53  LFDEMQRDGVA-ADTRTYTIFIDGLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDG 110
           LFD++Q+ G+   ++ +YT  ++ L K+   ++ +E+  + +       D    + ++  
Sbjct: 52  LFDQVQKMGLCVPNSYSYTCLLEVLSKS-ICIDLLEMRLKEMHDHGWGFDKYTLTPVLQV 110

Query: 111 LCKSGRLEIALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
            C     + AL++F+ +  RG +  D   +SI++      G++DKA +L   MEE  V  
Sbjct: 111 YCNMAEFDKALDVFNEIHDRGWV--DEYVFSILVLAFSKWGKVDKACELIETMEEKNVRL 168

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           N  TF +LI+GF++ +   K + L  KMK+    PD S+  +++  L  N+
Sbjct: 169 NKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNK 219



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 1/151 (0%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           + ++A  +F+E+   G   D   ++I +    K G + ++ EL  T+      L+ + + 
Sbjct: 116 EFDKALDVFNEIHDRG-WVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFC 174

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI G  K  R++ AL LF  + +     D+  Y ++I GL  +  + KA  L+ +M+  
Sbjct: 175 SLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGF 234

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
            + P+V     LI  F +  E +   E +H+
Sbjct: 235 KIQPDVKIVTKLISSFSKEEELTCFFEEMHE 265



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 1/165 (0%)

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   G   D  T T  +   C      +++++F  +   +  +D   +S L+    K G
Sbjct: 91  EMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHD-RGWVDEYVFSILVLAFSKWG 149

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +++ A EL  ++    +  +  T+  +I+G   + ++DKA  LF  M+++   P++  + 
Sbjct: 150 KVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYD 209

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +I G     +  K + L  +MK   + PD  IV+ ++   +K E
Sbjct: 210 VIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEE 254


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CKN  +  A +++ +M   G+    V +NTL  GL +  +VE A +L D+M  +G
Sbjct: 483 LIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG 542

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  +   C+ G I  + ++ + + +  CE DI  Y  LI GLCK+GR+++A 
Sbjct: 543 LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVAS 602

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  S+    +V     Y+ +I  L    +  +A  LF +M E    P+VIT+  +  G 
Sbjct: 603 KLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGL 662

Query: 182 IRINEP-SKVIELLHKMKEKNVMPD 205
                P  + ++   +M EK ++P+
Sbjct: 663 CNGGGPIQEAVDFTVEMLEKGILPE 687



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 2/242 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C     E A+ L+ EM  KG  PD   ++ L   L    +++ A  L  EM+  G
Sbjct: 413 LIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG 472

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   Y   IDGLCKN  + ++ ++F  + +L        Y+ LI+GLCKS R+E A 
Sbjct: 473 CARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAA 532

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ M+      G + +A D+  +M  N   P+++T+GTLI G 
Sbjct: 533 QLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGL 592

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +        +LL  ++ K ++      + V+  L K + +  ++  F   E  E+ D  
Sbjct: 593 CKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLF--REMMEKGDPP 650

Query: 242 NV 243
           +V
Sbjct: 651 DV 652



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK   +E A  L   + SKG+ PDV   N+L  GL      E A +LF+EM+  G
Sbjct: 378 LIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKG 437

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY+I I+ LC    + E++ L + + +  C  ++  Y+ LIDGLCK+ R+  A 
Sbjct: 438 CDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAE 497

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +    +    VTY+ +I+GL    ++++A  L   M    + P+  T+ T++  F
Sbjct: 498 DIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYF 557

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  +  +++  M      PD      ++  L K
Sbjct: 558 CQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCK 594



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG CK   IE AL    E   +G  PD V  N L  GL     +++  ++ D M   
Sbjct: 274 VLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEK 331

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I GLCK G I E+VE+   +    CE +   Y+ LI  LCK   +E A
Sbjct: 332 GFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAA 391

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   L    ++ DV T++ +I GL      + A +LF +M+E    P+  T+  LI  
Sbjct: 392 TELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIES 451

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                   + + LL +M+      +  + + ++D L KN
Sbjct: 452 LCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKN 490



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 110/219 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG C+   I+  L +   ML KG + DV  +N+L  GL ++ +++ A ++   M    
Sbjct: 308 LVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRD 367

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +T TY   I  LCK  ++  + EL R L       D+  ++ LI GLC +   EIA+
Sbjct: 368 CEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAM 427

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       D  TYSI+I  L ++ ++ +A  L  +ME +  A NV+ + TLI G 
Sbjct: 428 ELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGL 487

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            + N      ++  +M+   V   +   + +++ L K++
Sbjct: 488 CKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSK 526



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 106/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  EI+ A+ +   M+S+  +P+ V +NTL   L + + VE A +L   +   G
Sbjct: 343 LISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKG 402

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T+   I GLC       ++ELF  ++   C+ D   YS LI+ LC   RL+ AL
Sbjct: 403 VLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEAL 462

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       +VV Y+ +I GL  + ++  A D+F  ME   V+ + +T+ TLI+G 
Sbjct: 463 MLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGL 522

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +  +L+ +M  + + PD
Sbjct: 523 CKSKRVEEAAQLMDQMIMEGLKPD 546



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 33/250 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   CK  ++  A+ +  +M + G++PD     TL  G  E   VE A ++ + M   
Sbjct: 204 ILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVES 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVE---------------------LFRTLRILKC-- 97
           G    + +  + ++GLCK G I E++                      L RT  I +   
Sbjct: 264 GCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLE 323

Query: 98  ----------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
                     ELD+  Y+ LI GLCK G ++ A+E+ H +       + VTY+ +I  L 
Sbjct: 324 MMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLC 383

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
            +  ++ A +L   +    V P+V TF +LI G    +     +EL  +MKEK   PD  
Sbjct: 384 KENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEF 443

Query: 208 IVSIVVDLLA 217
             SI+++ L 
Sbjct: 444 TYSILIESLC 453



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 101/202 (50%), Gaps = 2/202 (0%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
            L+S+M++  + PDV   N L   L + HQ+  A  + ++M   G+  D +T+T  + G 
Sbjct: 185 TLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGF 244

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
            +   +  ++ +   +    CEL   + + L++GLCK GR+E AL   +         D 
Sbjct: 245 IEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQ 302

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VT++ +++GL   G + +  ++   M E     +V T+ +LI G  ++ E  + +E+LH 
Sbjct: 303 VTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHH 362

Query: 197 MKEKNVMPDASIVSIVVDLLAK 218
           M  ++  P+    + ++  L K
Sbjct: 363 MVSRDCEPNTVTYNTLIGTLCK 384


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 4/231 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK+  +  A +LY EM++ GI P+VV +  L  G   + ++E A  LF +M  + 
Sbjct: 178 VIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISEN 237

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+   +D  CK G I E+  +  T+     + D+ AYS L++G C    +  A 
Sbjct: 238 INPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQ 297

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F ++    L  DV +Y+IMI+       +D+A  LF +M    + P+V+T+ TLI G 
Sbjct: 298 SIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGL 357

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE----ISLNSLPS 228
            +    S  +EL+ +M ++   P+      +VD+L KN      S  SLPS
Sbjct: 358 CKSGRLSYAMELVDEMDDRGEPPNIITYCPIVDVLCKNHDGVLSSGKSLPS 408



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   + G      ++L +  +PDVV++ T+   + +   V  AF L+ EM   G
Sbjct: 146 LINGLCK---VGGDTRAALQLLRQAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASG 202

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TYT  IDG C  G + E++ LF+ +       ++  ++ L+D  CK G++E A 
Sbjct: 203 ISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAK 262

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +++    L +DVV YS +++G     ++ KA  +F  M E  ++ +V ++  +I+ F
Sbjct: 263 NVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMINEF 322

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            ++    + I+L  +M  K + PD      ++D L K+
Sbjct: 323 CKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKS 360



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 70  TIFIDGLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDGLCK-SGRLEIALELFHSL 127
           T  I G+C+ G I  ++   ++ +     ++D  +Y  LI+GLCK  G    AL+L    
Sbjct: 108 TTPIKGICQTGDIQRALNFHYKVVVARGFDVDHYSYGTLINGLCKVGGDTRAALQLL--- 164

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            R     DVV Y+ +I  +  D  ++ A DL+ +M  + ++PNV+T+  LI GF  + + 
Sbjct: 165 -RQAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKL 223

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + + L  KM  +N+ P+    + +VD   K
Sbjct: 224 EEALGLFKKMISENINPNVYTFNGLVDAFCK 254



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 40  GLFEIHQVERAFKL-FDEMQRDGVAADTRTYTIFIDGLCK-NGYIVESVELFRTLRILKC 97
           G+ +   ++RA    +  +   G   D  +Y   I+GLCK  G    +++L R       
Sbjct: 113 GICQTGDIQRALNFHYKVVVARGFDVDHYSYGTLINGLCKVGGDTRAALQLLRQ----AF 168

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
           E D+  Y+ +ID +CK   +  A +L++ +    +  +VVTY+ +I G    G++++A  
Sbjct: 169 EPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALG 228

Query: 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           LF  M    + PNV TF  L+  F +  +  +   +L+ M EK++  D
Sbjct: 229 LFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSD 276



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+IN +CK K ++ A+ L+ EM  K I PDVV ++TL  GL +  ++  A +L DEM   
Sbjct: 317 IMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDR 376

Query: 61  GVAADTRTYTIFIDGLCKN 79
           G   +  TY   +D LCKN
Sbjct: 377 GEPPNIITYCPIVDVLCKN 395


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 25/257 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G  +   IE AL+    M  KG  PD   +NT+   L +   +ERA  L  EM ++
Sbjct: 352 IMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN 411

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D+ T TI I GLCK G + E++++F  +    C+  +  Y+ LIDG  + GRLE A
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 121 LELFHSLPRG-------------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LFH +  G               V D  +   ++H +   GQ+ KA+ L   + ++ V
Sbjct: 472 RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGV 531

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD------------L 215
            P+V+T+ TLI+G  +       + L  +++ K + PD      ++D            +
Sbjct: 532 VPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMM 591

Query: 216 LAKNEISLNSLPSFTVH 232
           L +N +   S PS +++
Sbjct: 592 LFQNILQSGSSPSLSIY 608



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL LY+ M++ G  P+   +N L  GL +      A K+FDEM   G+  + + YT+ + 
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            LC  G I E+V+L  +++   C  D   Y+  + GLCK GR+  A +    L  G    
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            +  YS +I GL+   + D+    +  M E  ++P+V+ +  +I G          +  L
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 195 HKMKEKNVMPDASIVSIVVDLL 216
             MK+K  +PD    + V+ +L
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVL 392



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK      AL ++ EML +GI P+V I+  L   L    +++ A +L   M+  
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY  F+ GLCK G + E+ +    L+     L ++ YSCLIDGL ++ R +  
Sbjct: 272 GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEG 331

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              + ++    +  DVV Y+IMI G    G+++ A      M++    P+   + T++  
Sbjct: 332 FGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKV 391

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +  +   L  +M + N++ D++  +I++  L K
Sbjct: 392 LCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCK 429



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 35/236 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  C   +I+ A+ L   M  KG  PD V +N    GL ++ +V  AF+    +Q  
Sbjct: 247 VLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDG 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A   + Y+  IDGL +     E    ++T+       D+  Y+ +I G  ++GR+E A
Sbjct: 307 GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDA 366

Query: 121 -------------------------------LELFHSLP----RGVLVADVVTYSIMIHG 145
                                          LE  H+L     +  LV D  T +IMI G
Sbjct: 367 LSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           L   G +D+A  +F +M E+   P V+T+  LI GF R     +   L HKM+  N
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGN 482



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 99/199 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+  +S M     +P   ++NT+   L +   +  A  L++ M   G A +  TY + +D
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMD 215

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLCK G   +++++F  +       +++ Y+ L+  LC +G+++ A++L  S+     + 
Sbjct: 216 GLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP 275

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY+  + GL   G++++A    + +++   A  +  +  LI G  +     +     
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335

Query: 195 HKMKEKNVMPDASIVSIVV 213
             M E+N+ PD  + +I++
Sbjct: 336 KTMLERNISPDVVLYTIMI 354



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  C++ ++  A  L   ++  G+ PDVV +NTL  GL +   ++ A +LF E+Q  G
Sbjct: 506 LVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   IDGL +     +++ LF+ +        +  Y+ ++  LC+  +L  A+
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-HDLF-LDMEENAVAPNVITFGTLI 178
            L+   LP+              H    DG +D    +L  +D E   ++ N  T   + 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLI- 684

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G  ++      + + H ++E  +    +  +++++ L  + 
Sbjct: 685 -GLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDR 725



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 70/161 (43%)

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           H  E  F    + +  G+ A +  +   +      G   ++V+ F  +   +       Y
Sbjct: 116 HADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVY 175

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + ++  L  SG + +AL L++ +       +  TY++++ GL   G    A  +F +M +
Sbjct: 176 NTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLD 235

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + PNV  +  L+       +  + ++LL  MK+K  +PD
Sbjct: 236 RGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPD 276



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 51/115 (44%)

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
            A++ L+     +GR   A++ F  +           Y+ ++  L + G +  A  L+  
Sbjct: 138 SAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNR 197

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           M     APN  T+  L+ G  +       +++  +M ++ +MP+  I ++++  L
Sbjct: 198 MVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSL 252


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 109/214 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG  K   +  A   ++EMLSKG+KPD   +NT  +G  +I     AF + +EM   
Sbjct: 430 ILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAA 489

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY +F+  LC+ G   E+ +L   +       D   Y+ +I+G  K+G L  A
Sbjct: 490 GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKA 549

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F+ +    +   VVTY+++IH       +D A   F  M E +V  NVIT+  +I+G
Sbjct: 550 REVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIING 609

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                   +  +   +M+EK ++P+    +I+++
Sbjct: 610 LCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN 643



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++ YCK   ++ AL L SEM  +G  P+ V +N L  GL +  ++E+A  L +EM   G
Sbjct: 221 MLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   I+G C+ G  VE+ +L   +   +    +  Y+ L+ GLCK  ++    
Sbjct: 281 LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVR 340

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + +     D+V+++ +++G    G + +A  LF +++   + P VIT+ TLIHG 
Sbjct: 341 LRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGL 400

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                    + L  +M ++ + PD    +I+V+
Sbjct: 401 CMWGYLDAALRLKKEMTDQGLFPDIFTYTILVN 433



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 108/220 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+   I  A  L+ E+  + + P V+ +NTL  GL     ++ A +L  EM   G
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQG 420

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYTI ++G  K GY+  +   F  +     + D  AY+  I G  K     +A 
Sbjct: 421 LFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAF 480

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       DV+TY++ +H L   G  ++A DL  +M  + + P+ +T+ ++I+GF
Sbjct: 481 SMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGF 540

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           ++     K  E+ ++M  K V P     ++++   A  ++
Sbjct: 541 VKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQM 580



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G  K  +   A ++  EML+ G  PDV+ +N     L +    E A  L + M  DG+
Sbjct: 467 IVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL 526

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
             D  TYT  I+G  KNG++ ++ E+F  +        +  Y+ LI        L++A  
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
            F  +    + A+V+TY+ +I+GL    +MD+A+  F +MEE  + PN  ++  LI+   
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    + + L  +M ++ + PD+   S+ +  L ++
Sbjct: 647 NMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRD 683



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 100/217 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C+      A +L  EM+++   P +  +NTL  GL +  QV      F +M +  
Sbjct: 291 LINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSK 350

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  ++   + G C+ G I E+  LF  L+       +  Y+ LI GLC  G L+ AL
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L  D+ TY+I+++G +  G +  A   F +M    + P+   + T I G 
Sbjct: 411 RLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGE 470

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++I + S    +  +M      PD    ++ V  L +
Sbjct: 471 MKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 96/205 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  K  E+E A  L  EML+ G+      +N L  G  +      AF L +EM   
Sbjct: 255 VLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                  TY   + GLCK   +      F  +   K   DI +++ L+ G C++G +  A
Sbjct: 315 RAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEA 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  L    LV  V+TY+ +IHGL   G +D A  L  +M +  + P++ T+  L++G
Sbjct: 375 FLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNG 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             ++   S      ++M  K + PD
Sbjct: 435 CFKLGYVSMARGFFNEMLSKGLKPD 459



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +  A N+Y  M   GIKP VV +NT+     +  +V++A +L  EMQ  G   +  TY +
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELFHSLPR 129
            ++GL K G + ++  L     +L   L++ AY+   LI+G C+ G    A +L   +  
Sbjct: 256 LVNGLSKKGELEQAKGLIE--EMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVN 313

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
                 + TY+ +++GL    Q+      F DM ++   P++++F +L++G+ R    S+
Sbjct: 314 RRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISE 373

Query: 190 VIELLHKMKEKNVMP 204
              L  ++K ++++P
Sbjct: 374 AFLLFDELKCRDLVP 388



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
            L ++ +M+  G+ PDV   N +   L + + + +A  ++  M++ G+     TY   +D
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
             CK G + +++EL   ++   C  +   Y+ L++GL K G LE A  L   +    L  
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNV 283

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
              TY+ +I+G    G   +A DL  +M      P + T+ TL++G  +  + + V    
Sbjct: 284 SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRF 343

Query: 195 HKMKEKNVMPD 205
             M +    PD
Sbjct: 344 SDMLKSKFTPD 354



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 61/111 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +   + ++ A   +S+ML K +  +V+ +N +  GL    +++ A+K FDEM+  
Sbjct: 570 VLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEK 629

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G+  +  +YTI I+  C  GY  E++ L+R +   K + D   +S  +  L
Sbjct: 630 GILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNL 680



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 82/166 (49%)

Query: 53  LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112
           +FD+M R+G+  D +     +  L     + ++  ++  +     +  +  Y+ ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
           K GR++ ALEL   +       + VTY+++++GL   G++++A  L  +M  + +  +  
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           T+  LI+GF +     +  +L+ +M  +   P  S  + ++  L K
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 55/99 (55%)

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L +F  + R  L+ DV   + ++  L ++  + KA +++  ME+  + P V+T+ T++ 
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + +     + +ELL +M+E+   P+    +++V+ L+K
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSK 262


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 41/276 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE----- 56
           LING+CK  E++ A +L+  M  +GI+PD++ ++TL  G F+   +    KLF +     
Sbjct: 292 LINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKG 351

Query: 57  ------------------------------MQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                         M   G++ +  TYTI I GLC++G I E+ 
Sbjct: 352 VKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF 411

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++  +     E  I  YS LIDG CK G L     L+  + +     DVV Y +++ GL
Sbjct: 412 GMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 471

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M  A    + M   ++  NV+ F +LI G+ R+N   + +++   M    + PD 
Sbjct: 472 SKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDV 531

Query: 207 SI------VSIVVDLLAKNEISLNSLPSFTVHERQE 236
           +       VSI+ D   K+      L  F + +R +
Sbjct: 532 ATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNK 567



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +IE A  L S +L  G  P+VV   TL  G  +  +++RAF LF  M++ G+  D   Y+
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             IDG  K G +    +LF        +LD+  +S  ID   KSG L  A  ++  +   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +  +VVTY+I+I GL  DG++ +A  ++  + +  + P+++T+ +LI GF +       
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSG 445

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             L   M +    PD  I  ++VD L+K  + L+++
Sbjct: 446 FALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAM 481



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 14/227 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF---------- 51
           LI+G+C+    + AL ++  M   GIKPDV    T+      +  +E AF          
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVM----RVSIMEDAFCKHMKPTIGL 557

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           +LFD MQR+ ++AD     + I  L K   I ++ + F  L   K E DI  Y+ +I G 
Sbjct: 558 QLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGY 617

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           C   RL+ A  +F  L       + VT +I+IH L  +  MD A  +F  M E    PN 
Sbjct: 618 CSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNA 677

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +T+G L+  F +  +     +L  +M+EK + P     SI++D L K
Sbjct: 678 VTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCK 724



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 122/263 (46%), Gaps = 47/263 (17%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C++  I  A  +Y ++L +G++P +V +++L  G  +   +   F L+++M + 
Sbjct: 396 ILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKM 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE-- 118
           G   D   Y + +DGL K G ++ ++     +      L++  ++ LIDG C+  R +  
Sbjct: 456 GYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEA 515

Query: 119 ---------------------------------------IALELFHSLPRGVLVADVVTY 139
                                                  I L+LF  + R  + AD+   
Sbjct: 516 LKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVC 575

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIELLHK 196
           +++IH L+   +++ A   F ++ E  + P+++T+ T+I G+    R++E  ++ ELL  
Sbjct: 576 NVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELL-- 633

Query: 197 MKEKNVMPDASIVSIVVDLLAKN 219
            K     P+   ++I++ +L KN
Sbjct: 634 -KVTPFGPNTVTLTILIHVLCKN 655



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CKN +++GA+ ++S M  KG KP+ V +  L     +   +E +FKLF+EMQ  
Sbjct: 647 ILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEK 706

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EI 119
           G++    +Y+I IDGLCK G + E+  +F      K   D+ AY+ LI G CK GRL E 
Sbjct: 707 GISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEA 766

Query: 120 ALELFHSLPRGVLVADVVTYSI 141
           AL   H L  GV   D++  ++
Sbjct: 767 ALLYEHMLRNGVKPDDLLQRAL 788



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 9/243 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G  K   +  A+    +ML + I+ +VV+ N+L  G   +++ + A K+F  M   
Sbjct: 466 VLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIY 525

Query: 61  GVAADTRTYT------IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           G+  D  T+T      I  D  CK+      ++LF  ++  K   DI   + +I  L K 
Sbjct: 526 GIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKC 585

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            R+E A + F++L  G +  D+VTY+ MI G  +  ++D+A  +F  ++     PN +T 
Sbjct: 586 HRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTL 645

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
             LIH   + N+    I +   M EK   P+A     ++D  +K   S++   SF + E 
Sbjct: 646 TILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSK---SVDIEGSFKLFEE 702

Query: 235 QEE 237
            +E
Sbjct: 703 MQE 705



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 101/198 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   IE A   ++ ++   ++PD+V +NT+  G   + +++ A ++F+ ++      +T 
Sbjct: 584 KCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTV 643

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T TI I  LCKN  +  ++ +F  +     + +   Y CL+D   KS  +E + +LF  +
Sbjct: 644 TLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEM 703

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +   +V+YSI+I GL   G++D+A ++F    +  + P+V+ +  LI G+ ++   
Sbjct: 704 QEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRL 763

Query: 188 SKVIELLHKMKEKNVMPD 205
            +   L   M    V PD
Sbjct: 764 VEAALLYEHMLRNGVKPD 781



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 100/213 (46%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ + +CK+ +    L L+  M    I  D+ + N +   LF+ H++E A K F+ +   
Sbjct: 542 IMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEG 601

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I G C    + E+  +F  L++     +    + LI  LCK+  ++ A
Sbjct: 602 KMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGA 661

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +       + VTY  ++        ++ +  LF +M+E  ++P+++++  +I G
Sbjct: 662 IRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDG 721

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
             +     +   + H+  +  ++PD    +I++
Sbjct: 722 LCKRGRVDEATNIFHQAIDAKLLPDVVAYAILI 754


>gi|255661010|gb|ACU25674.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 376

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  ++E A+++ + M+  G KP+  ++N L  GL    + E A ++F EM    
Sbjct: 135 MINGLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGFPH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY+I I+GLCK+    E+ +L + +        +  YS L+ GLC   ++E+AL
Sbjct: 195 CSPTIVTYSILINGLCKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ + +     DV  ++I+IHGL +  +   A  L+LDM     +PN++T  TL+ GF
Sbjct: 255 QLWNQVTKKGFKPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNCSPNLVTHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++ +  + PD    +I +  L + N IS
Sbjct: 315 YKDGDIRNALVMWARILKNELQPDIISYNITLKGLCSCNRIS 356



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 120/245 (48%), Gaps = 4/245 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ +   I+    L+ EM+ K     V   N +  GLF+  +V+    +++ M++ G
Sbjct: 31  MLNGFYRAGRIKDCFELW-EMMGKEGSRSVASFNIMMRGLFDNGRVDEVNSIWELMKKGG 89

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNGYI +S+ L           D  AY  +I+GLCK  +LE A+
Sbjct: 90  YVEDSITYGILVHGFCKNGYINKSLHLLEIXERKGRXXDALAYXPMINGLCKETKLEKAV 149

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + +     +   Y+ +I+GL    + + A  +F +M     +P ++T+  LI+G 
Sbjct: 150 SVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGFPHCSPTIVTYSILINGL 209

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA---KNEISLNSLPSFTVHERQEEV 238
            +    S+  +L+ +M EK + P     S+++  L    K E++L      T    + +V
Sbjct: 210 CKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDV 269

Query: 239 DESNV 243
              N+
Sbjct: 270 QMHNI 274



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 107/214 (50%), Gaps = 1/214 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C++ +I+GA  +Y +++   + PD V++N +  G +   +++  F+L++ M ++G +   
Sbjct: 1   CESGDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGKEG-SRSV 59

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            ++ I + GL  NG + E   ++  ++      D   Y  L+ G CK+G +  +L L   
Sbjct: 60  ASFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLHLLEI 119

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
             R     D + Y  MI+GL  + +++KA  +   M ++   PN   +  LI+G I  ++
Sbjct: 120 XERKGRXXDALAYXPMINGLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASK 179

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               I +  +M   +  P     SI+++ L K+E
Sbjct: 180 SEDAIRVFREMGFPHCSPTIVTYSILINGLCKSE 213



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 99/203 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING     + E A+ ++ EM      P +V ++ L  GL +  +   A+ L  EM   G
Sbjct: 170 LINGLIGASKSEDAIRVFREMGFPHCSPTIVTYSILINGLCKSERFSEAYDLVKEMLEKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY++ + GLC    +  +++L+  +     + D+Q ++ LI GLC   + + AL
Sbjct: 230 LTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVAKTQHAL 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  + R     ++VT++ ++ G Y DG +  A  ++  + +N + P++I++   + G 
Sbjct: 290 SLYLDMNRWNCSPNLVTHNTLMEGFYKDGDIRNALVMWARILKNELQPDIISYNITLKGL 349

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
              N  S  I  LH    K + P
Sbjct: 350 CSCNRISDAILFLHDAVRKKIFP 372



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK++    A +L  EML KG+ P V+ ++ L  GL   H+VE A +L++++ + 
Sbjct: 204 ILINGLCKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKK 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D + + I I GLC       ++ L+  +    C  ++  ++ L++G  K G +  A
Sbjct: 264 GFKPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNCSPNLVTHNTLMEGFYKDGDIRNA 323

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           L ++  + +  L  D+++Y+I + GL +  ++  A     D     + P  IT
Sbjct: 324 LVMWARILKNELQPDIISYNITLKGLCSCNRISDAILFLHDAVRKKIFPTKIT 376



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           C+SG ++ A  ++  +    +  D V Y+ M++G Y  G++    +L+ +M     + +V
Sbjct: 1   CESGDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELW-EMMGKEGSRSV 59

Query: 172 ITFGTLIHGFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
            +F  ++ G     R++E + + EL   MK+   + D+    I+V    KN     SL  
Sbjct: 60  ASFNIMMRGLFDNGRVDEVNSIWEL---MKKGGYVEDSITYGILVHGFCKNGYINKSLHL 116

Query: 229 FTVHERQ 235
             + ER+
Sbjct: 117 LEIXERK 123


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK+  I+ AL L+ +ML K +    V +N +  GLF+  +   A ++F EM   G
Sbjct: 581 LVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESG 640

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY   + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 641 MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAK 700

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV  ++TY +MI  L  +   + A +LF  ME+++  P+      +I   
Sbjct: 701 ELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRML 760

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   E +K    L K+ +K ++P+A+  S+++ L + N
Sbjct: 761 LNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVN 798



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 109/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK KE++ A  +  +M+  G++P+ + +N L  G       + + ++F EM    
Sbjct: 265 LINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL 324

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D      F+  LCK+G I E+ ++F ++ +   + D+ +Y  L+ G   +G +    
Sbjct: 325 LVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMD 384

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +V D   ++ +I+     G MDK+  +F DM +  V P++ITF T+I  F
Sbjct: 385 NLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAF 444

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R+      +E  + M +  V PD ++ S ++
Sbjct: 445 CRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLI 476



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y + +  +  L ++  +L  G+ PDV  +N L  G  +  +V++A  LF +M+  
Sbjct: 194 ILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQ 253

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I+GLCK   + ++  + R +       +   Y+CLI G   SG  + +
Sbjct: 254 GIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKES 313

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +   +LV DV   +  +  L   G++ +A D+F  M      P+VI++G L+HG
Sbjct: 314 VRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHG 373

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +      + +  L + M  + V+PD  + + +++  A+
Sbjct: 374 YATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYAR 411



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 13/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG-LFEIHQVERAFKLFDEMQRD 60
           LI G C  +++  A  L S+MLSKGI P  +   T  I  L +  +V     + D +   
Sbjct: 475 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 534

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   +DG C  G + E+V L  ++  +  E DI  Y+ L+DG CK GR++ A
Sbjct: 535 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA 594

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    V+Y+I++HGL+   +   A ++F +M E+ +A ++ T+ T++ G
Sbjct: 595 LTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGG 654

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             R N   +   LL K+   NV  D    +IV+  +            F V  RQE
Sbjct: 655 LCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM------------FKVGRRQE 698



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY     I G  NL++ M+ +G+ PD  + NTL      +  ++++  +F++M + G
Sbjct: 370 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 429

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T++  I   C+ G + +++E F  +       D   YSCLI G C    L  A 
Sbjct: 430 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAK 489

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL    L +G+    +  ++ +I+ L  +G++ +  D+   +      PN+ITF +L+ G
Sbjct: 490 ELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDG 549

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  +    + + LL  M+   V PD    + +VD   K+
Sbjct: 550 YCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKH 588



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 115/242 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   ++  G +P+++  N+L  G   +  ++ A  L D M+  G
Sbjct: 511 IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 570

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +DG CK+G I +++ LFR +   +  L   +Y+ ++ GL ++ R  +A 
Sbjct: 571 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 630

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+FH +    +   + TY+ ++ GL  +   D+A+ L   +    V  +++TF  +I   
Sbjct: 631 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM 690

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            ++    +  EL   +    ++P      +++  L K E   ++   F+  E+     +S
Sbjct: 691 FKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDS 750

Query: 242 NV 243
            +
Sbjct: 751 RI 752



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 85  SVELFRTLRILKCE---LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +VELF+ +    C      I  Y+ LI+   ++ R ++ L +F  L R  L  DV +Y+ 
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 229

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I G   +G++DKAHDLF  MEE  + PNV+T+ +LI+G  +  E  K   +L +M    
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289

Query: 202 VMPD 205
           V P+
Sbjct: 290 VRPN 293



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 50  AFKLFDEMQRDG---VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAY 104
           A +LF  M R      A    TY I I+  C        + L    R+L+  L  D+ +Y
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILIN--CYRRARRPDLGLPVFGRLLRTGLGPDVFSY 227

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LIDG  K G ++ A +LF+ +    ++ +VVTYS +I+GL    +MDKA  +   M  
Sbjct: 228 NALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVG 287

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             V PN +T+  LIHG+       + + +  +M    ++PD    +  +  L K+
Sbjct: 288 AGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 342



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 119 IALELFHSLPRGVL---VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +A+ELF  + R         + TY+I+I+      + D    +F  +    + P+V ++ 
Sbjct: 169 LAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYN 228

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LI GF +  E  K  +L +KM+E+ +MP+    S +++ L K +
Sbjct: 229 ALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTK 273


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 3/232 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  K  + E A++L+ +M  KG KP++V+++ L  GL    +   A ++ + M   
Sbjct: 367 VLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS 426

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY+  + G  K G   E+V++++ +    C  +   YS LIDGLC  GR++ A
Sbjct: 427 GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEA 486

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM---EENAVAPNVITFGTL 177
           + ++  +    +  D V YS +I GL   G MD A  L+ +M   EE    P+V+T+  L
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNIL 546

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           + G     + S+ ++LL+ M ++   PD    +  ++ L++   S +   SF
Sbjct: 547 LDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSF 598



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I   CK + ++ A+ ++  M  +   PD   + TL  GL +  +++ A  L DEMQ +
Sbjct: 192 LVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSE 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +     Y + IDGLCK G +    +L   + +  C  +   Y+ LI GLC  G+L+ A
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   +     + + VTY  +I+GL    +   A  L   MEE     N   +  LI G
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  + + L  KM EK   P+  + S++VD L +
Sbjct: 372 LFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 98/192 (51%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I P+ +  N +   L ++  V+RA ++F  M       D  TY   +DGLCK   I E+V
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L   ++   C      Y+ LIDGLCK G L    +L  ++     V + VTY+ +IHGL
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++DKA  L   M  +   PN +T+GTLI+G ++    +  + LL  M+E+    + 
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ 362

Query: 207 SIVSIVVDLLAK 218
            I S+++  L K
Sbjct: 363 HIYSVLISGLFK 374



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C   +++ A++L   M+S    P+ V + TL  GL +  +   A +L   M+  G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y++ I GL K G   E++ L+R +    C+ +I  YS L+DGLC+ G+   A 
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ + +     + +  TYS ++ G +  G  ++A  ++ +M++   + N   +  LI G 
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +    + + +  KM    + PD    S ++  L 
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 105/217 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK  ++     L   M  KG  P+ V +NTL  GL    ++++A  L + M   
Sbjct: 262 VLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSS 321

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  TY   I+GL K     ++V L  ++      L+   YS LI GL K G+ E A
Sbjct: 322 KCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEA 381

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L+  +       ++V YS+++ GL  +G+ ++A ++   M  +   PN  T+ +L+ G
Sbjct: 382 MSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKG 441

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           F +     + +++  +M +     +    S+++D L 
Sbjct: 442 FFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLC 478



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 120 ALELFHSL------PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVI 172
           A++LFH +       R V   + V   I+  GLY+ G   + +D  ++   N  ++PN +
Sbjct: 131 AVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGL--EFYDYVVNSNMNMNISPNGL 188

Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +F  +I    ++    + IE+   M E+  +PD      ++D L K E
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEE 236


>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
 gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
          Length = 540

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +  GY    +IE AL L  EM+ KG+  DV  +  L  GLF + + + A ++F+ M R G
Sbjct: 250 IFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              DTRTY + +   CK G +  + ++   +     E +   Y+ L+DG     R   A+
Sbjct: 310 CVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAI 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHG 180
            ++ ++ R ++   +VTY+I++ GL   GQ   A  +  +M E + + P ++++ TLIHG
Sbjct: 370 NVYSTMLRKMVKPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHG 429

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +     + I++  +M +  V+PD    + ++  LA
Sbjct: 430 LGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALA 466



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 105/197 (53%), Gaps = 6/197 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G CK  ++  A  ++ EM  KG KPD++++ +L  GL +   ++ A KL  E+   
Sbjct: 147 VVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSR 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT FI GLCKNG + E+ +L R +  + C  ++    C+  G    G++E A
Sbjct: 207 GMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKM-CAAEV--LHCIFGGYVLEGKIEEA 263

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  +  DV  Y+ +IHGL+   + D+A ++F  M      P+  T+G ++  
Sbjct: 264 LTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSH 323

Query: 181 FI---RINEPSKVIELL 194
           F    ++    KV+E++
Sbjct: 324 FCKQGKMQAACKVVEIM 340



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 38/240 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKP------------------------------- 29
           I+I G C       A  L  EM + GIK                                
Sbjct: 9   IVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSYFHSVSPR 68

Query: 30  ---DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
              DVV + TL +GL +  +++ A +LF+EM   G       YT  I+ L K     +++
Sbjct: 69  SDLDVVSYTTLIMGLADSGRIDVACELFEEMSSSGSQC-VVAYTAIINALFKAHRPDQAI 127

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
             F  +   KC+ D++ ++ +I GLCK+G+L  A E+F  + R     D++ Y+ ++ GL
Sbjct: 128 ACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGL 187

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIELLHKMKEKNVM 203
                MD+A  L  ++    + P  +T+ + I G     R+ E  K++  + KM    V+
Sbjct: 188 SKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVL 247



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 2/192 (1%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           DV  +N +  GL    +  RA++L  EM+  G+     T+ I +  LC+   + +++  F
Sbjct: 3   DVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSYF 62

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
            ++   + +LD+ +Y+ LI GL  SGR+++A ELF  +        VV Y+ +I+ L+  
Sbjct: 63  HSVSP-RSDLDVVSYTTLIMGLADSGRIDVACELFEEMSSSGSQC-VVAYTAIINALFKA 120

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
            + D+A   F  M      P++ TF  +I G  +  + ++  E+  +M  K   PD  + 
Sbjct: 121 HRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVY 180

Query: 210 SIVVDLLAKNEI 221
           + +VD L+K  +
Sbjct: 181 TSLVDGLSKASM 192



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 106/250 (42%), Gaps = 33/250 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G   +  I+ A  L+ EM S G +  VV +  +   LF+ H+ ++A   F+ M    
Sbjct: 79  LIMGLADSGRIDVACELFEEMSSSGSQC-VVAYTAIINALFKAHRPDQAIACFERMVARK 137

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D RT+T+ I GLCK G +  + E+F+ +     + DI  Y+ L+DGL K+  ++ A 
Sbjct: 138 CDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEAR 197

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME------------------ 163
           +L   +    +    VTY+  I GL  +G++++A  L  +M                   
Sbjct: 198 KLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVLHCIFGGYVLE 257

Query: 164 --------------ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
                         +  V  +V  +  LIHG   +    +  E+   M  +  +PD    
Sbjct: 258 GKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTY 317

Query: 210 SIVVDLLAKN 219
            ++V    K 
Sbjct: 318 GMIVSHFCKQ 327



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 103/212 (48%), Gaps = 9/212 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++ +CK  +++ A  +   M + G++ +  ++N+L  G   +++   A  ++  M R 
Sbjct: 319 MIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAINVYSTMLRK 378

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-----IQAYSCLIDGLCKSG 115
            V     TY I + GLCK G   ++  + R +R    E D     I +Y  LI GL K+G
Sbjct: 379 MVKPSIVTYNILMLGLCKLGQTADARLVLREMR----ERDGIVPTIVSYRTLIHGLGKAG 434

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R + A+++F  +    +V D  + + +I  L    +MD+A  L  DM    + P+ + + 
Sbjct: 435 RADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAYN 494

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
            L+       +     ++L +M + + +PD S
Sbjct: 495 ALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGS 526



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 39/156 (25%)

Query: 99  LDIQAYSCLIDGLCKSGRLEIALEL----------------------------------- 123
           LD+ +Y+ +I GLC +GR   A EL                                   
Sbjct: 2   LDVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSY 61

Query: 124 FHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           FHS+ PR  L  DVV+Y+ +I GL + G++D A +LF +M  +  +  V+ +  +I+   
Sbjct: 62  FHSVSPRSDL--DVVSYTTLIMGLADSGRIDVACELFEEMSSSG-SQCVVAYTAIINALF 118

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + P + I    +M  +   PD    ++V+  L K
Sbjct: 119 KAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCK 154



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL+ G CK  +   A  +  EM  + GI P +V + TL  GL +  + + A  +F EM  
Sbjct: 389 ILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVD 448

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +GV  D  + T  I  L     + E+ +L R +  +    D  AY+ L+  LC   ++  
Sbjct: 449 NGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGP 508

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           A ++   +     V D  T+  M  G   D
Sbjct: 509 AWDVLVEMMDNSCVPDGSTFRAMKLGFKAD 538



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 43/89 (48%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DV +Y+I+I GL   G+  +A++L  +ME   +  + +T G ++       E  + +   
Sbjct: 3   DVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSYF 62

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISL 223
           H +  ++ +   S  ++++ L     I +
Sbjct: 63  HSVSPRSDLDVVSYTTLIMGLADSGRIDV 91


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   +E A+ LY EM SK I P+  + + +  GLFE   +  A   FD + + 
Sbjct: 450 VLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKS 509

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            VA +   Y I IDG  K G I E+V  ++ +        I  ++ LI G CK G+L  A
Sbjct: 510 DVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEA 569

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L  ++    LV   VTY+ +++G   +G M    D+  +ME  A+ P  IT+  ++ G
Sbjct: 570 VKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKG 629

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + ++LL  M  + + PD    + V+    K
Sbjct: 630 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCK 667



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G C    +E AL   ++M + G++PD+V +N L  G   +  +  A+K+   M  +
Sbjct: 310 ILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLN 369

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TYTI I G C+ G I ES +L   +     +L I  Y+ L+  LCKSGR++ A
Sbjct: 370 GLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEA 429

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L H +    L  D++TYS++IHGL   G +++A +L+ +M    + PN      +I G
Sbjct: 430 VILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISG 489

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  S+       + + +V  +  + +I++D  AK
Sbjct: 490 LFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAK 527



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 106/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL NG+     I GA  +   ML  G+ PD+V +  L  G  ++  +E +FKL ++M   
Sbjct: 345 ILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQ 404

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT+ +  LCK+G I E+V L   + ++  + D+  YS LI GLCK G +E A
Sbjct: 405 GLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEA 464

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL+  +    +  +    S +I GL+  G + +A   F  + ++ VA  +I +  +I G
Sbjct: 465 IELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDG 524

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           + ++    + +    ++ EK + P
Sbjct: 525 YAKLGNIGEAVRSYKQIIEKGISP 548



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+CK   ++ A + +  M+  G+ PDV  +N L  GL     +E A +  ++M+  G
Sbjct: 276 LMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHG 335

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY I  +G    G I  + ++ + + +     D+  Y+ LI G C+ G +E + 
Sbjct: 336 VEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESF 395

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L   +VTY++++  L   G++D+A  L  +ME   + P+++T+  LIHG 
Sbjct: 396 KLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGL 455

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS-IVVDLLAKNEIS 222
            +     + IEL  +M  K + P++ + S I+  L  K  IS
Sbjct: 456 CKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAIS 497



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L   Y + + +  AL + ++M    ++  +  +N+L   L+ +   +  + +++E++  
Sbjct: 173 MLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSL---LYNLRHTDIMWDVYNEIKAS 229

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +  T  I IDGLC+   + ++V   R     +    + +++ L+ G CK G +++A
Sbjct: 230 GVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVA 289

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  + +  L+ DV +Y+I++HGL   G M++A +   DME + V P+++T+  L +G
Sbjct: 290 KSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANG 349

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F  +   S   +++ +M    + PD    +I++
Sbjct: 350 FRILGLISGAWKVVQRMLLNGLNPDLVTYTILI 382



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 102/220 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK  ++  A+ L   +   G+ P  V + TL  G  E   +   F +  EM+   
Sbjct: 556 LIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKA 615

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYT+ + GLCK G + ESV+L + +       D   Y+ +I   CK+  L+ A 
Sbjct: 616 IKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAF 675

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + + +  L    VTY+++I+GL   G +  A  L + +++ ++    + + T+I   
Sbjct: 676 QLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAH 735

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               +    +   H+M E+         S V++ L K  +
Sbjct: 736 CAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNL 775



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 98/204 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++ G CK   +  ++ L   M ++G+ PD + +NT+     + H +++AF+L ++M + 
Sbjct: 625 VVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQH 684

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY + I+GLC  G + ++  L  TL+     L   AY+ +I   C  G ++ A
Sbjct: 685 SLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNA 744

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L  FH +        +  YS +I+ L     +  A   F  M  + + P+      +++ 
Sbjct: 745 LVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNA 804

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F R  +P+ V E+   M +  ++P
Sbjct: 805 FHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  +++ AL + +EM  +GIK +   ++ +  G  ++     AF +F++M   G
Sbjct: 376 LINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAG 435

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY I ++  CKNG +  ++EL   +    C   ++ Y+ +IDG  K G L +A 
Sbjct: 436 IKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAF 495

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +          TY++++HGL   GQMD+A  +  +M    V PN  ++ TLI G+
Sbjct: 496 ETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGY 555

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             I +     +  +++KE  + PD
Sbjct: 556 ACIGDMGLAFKYFNRIKEVGLKPD 579



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 107/217 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+G+ K  ++  A     +M   G +P    +N +  GL +  Q++RA  + DEM   
Sbjct: 480 IIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVA 539

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  + R+YT  I+G    G +  + + F  ++ +  + D+ AY+ L+   CK+GR++  
Sbjct: 540 GVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQST 599

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L +   +    +  +   Y+I++ G    G M +A D+   M    + P++ ++ + I+ 
Sbjct: 600 LAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINA 659

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +  +  K  E + +MK++ V P+    + ++   A
Sbjct: 660 CCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWA 696



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 110/220 (50%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK---GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           +L++GY   + ++  LN++  + ++   G+ P VV +  L     ++ ++++A ++ +EM
Sbjct: 337 MLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEM 396

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +  G+  + +TY++ IDG  + G    +  +F  +     + D   Y+ L++  CK+G++
Sbjct: 397 EDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQM 456

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             ALEL   +  G     + TY+I+I G    G +  A +   DM+     P+  T+  +
Sbjct: 457 NRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVI 516

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           +HG  +  +  +   ++ +M    V P+    + +++  A
Sbjct: 517 MHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYA 556



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GY +  +   A +++ +M + GIKPD + +N L     +  Q+ RA +L   M+  
Sbjct: 410 MIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESG 469

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                 RTYTI IDG  K G +  + E  R +++         Y+ ++ GL ++G+++ A
Sbjct: 470 DCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRA 529

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    +  +  +Y+ +I G    G M  A   F  ++E  + P+VI + +L+  
Sbjct: 530 ASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKA 589

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       + +  +M    V  +  I +I++D  A+
Sbjct: 590 CCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQ 627



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ--- 58
           +I+ YCK   +E A  + + M  +G++  + ++N L  G      V++   +F  ++   
Sbjct: 303 IIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKART 362

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G++    +Y   I+   K G + +++++   +     + + + YS +IDG  + G   
Sbjct: 363 ETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTA 422

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +F  +    +  D +TY+I+++    +GQM++A +L   ME     P + T+  +I
Sbjct: 423 NAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIII 482

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            GF++I +     E +  MK     P A+  ++++  LA+
Sbjct: 483 DGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQ 522



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 3/221 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y   +++ GA+    EM ++G+ P+   ++ +  G   +  VE A + F     + 
Sbjct: 233 LIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSEN 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   I   CK G +  +  +   +     E  +  Y+ L+DG      ++  L
Sbjct: 293 WHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCL 352

Query: 122 ELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            +F  L       L   VV+Y  +I+     G+MDKA  +  +ME+  +  N  T+  +I
Sbjct: 353 NVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMII 412

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            G++++ + +    +   M    + PD    +I+++   KN
Sbjct: 413 DGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKN 453



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 108/217 (49%), Gaps = 3/217 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+N Y K  +   A   +  M + GI+P+V  +  L         +  A    +EM+ +
Sbjct: 197 LLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAE 256

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY++ I G  + G +  +   F+         +   Y+ +I   CK+G +E A
Sbjct: 257 GVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERA 316

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME---ENAVAPNVITFGTL 177
             +  ++    L A +  Y++++ G  +   +DK  ++F  ++   E  ++P V+++G L
Sbjct: 317 EAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCL 376

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           I+ + ++ +  K +++ ++M+++ +  +    S+++D
Sbjct: 377 INLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIID 413


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 12/221 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC   ++  A N++ EM  +GI+PD+V +N L  G       + A +L D +   G
Sbjct: 424 LIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQG 483

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  ++ T+   I+GLC  G + E+     TL   KC   ++ YS ++DG CK+     A 
Sbjct: 484 LKPNSATHNRIIEGLCMAGKVKEAEAFLNTLED-KC---LENYSAMVDGYCKANFTRKAY 539

Query: 122 ELFHSLPRG----VLVADV----VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ELF  L +     +L  DV    + Y  +I     DG M +A  +F  + E  + P+VIT
Sbjct: 540 ELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVIT 599

Query: 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +  +I+G+ R+N   +  ++ + MKE+ + PD    ++V+D
Sbjct: 600 YTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLD 640



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 16/234 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  Y +    + A++   +   +G  P ++  N L   L E  +++ A  ++  ++R 
Sbjct: 162 MLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRL 221

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY IFI  LC+ G   E+V++FR +       +    S  I+GLC   R ++ 
Sbjct: 222 GLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLG 281

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E   +L       D   Y+ +I G  ++ ++ +A D+F+DM    +AP+   +G LIH 
Sbjct: 282 YEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHA 341

Query: 181 FIRINE----------------PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +                    + +++   + ++  +  D  + +IVVD L K
Sbjct: 342 YCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCK 395



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 51/267 (19%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL------------------- 41
           I I   C+    E A++++ EM   G+ P+ V  +T   GL                   
Sbjct: 232 IFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAA 291

Query: 42  ------FEIHQVERAF----------KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                 F    V R F           +F +M  +G+A D   Y   I   CK G ++++
Sbjct: 292 NWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQA 351

Query: 86  VEL----------------FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           V L                F+  R     LD   Y+ ++D LCK G++E A+EL + +  
Sbjct: 352 VALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKG 411

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             +  DVV Y+ +I G    G++  A ++F +M+E  + P+++T+  L+ GF R     +
Sbjct: 412 RRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKE 471

Query: 190 VIELLHKMKEKNVMPDASIVSIVVDLL 216
            +ELL  +  + + P+++  + +++ L
Sbjct: 472 ALELLDCIGTQGLKPNSATHNRIIEGL 498



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 16/215 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           +I G+C   +++ A +++ +M+++GI PD  I+  L     +   + +A  L        
Sbjct: 303 VIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNG 362

Query: 54  --------FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
                   F E +  G+  D   Y I +D LCK G + E+VEL   ++  +  LD+  Y+
Sbjct: 363 IKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYT 422

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LI G C  G+L  A  +F  +    +  D+VTY+I++ G   +G   +A +L   +   
Sbjct: 423 TLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQ 482

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            + PN  T   +I G     +  +    L+ +++K
Sbjct: 483 GLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDK 517



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 109/218 (50%), Gaps = 20/218 (9%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKP----------------DVVIHNTLFIGLFEIH 45
           LI+ YCK   +  A+ L+++M+S GIK                 D V++N +   L ++ 
Sbjct: 338 LIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLG 397

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +VE A +L +EM+   ++ D   YT  I G C  G +V++  +F  ++    E DI  Y+
Sbjct: 398 KVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYN 457

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            L+ G  ++G  + ALEL   +    L  +  T++ +I GL   G++ +A + FL+  E+
Sbjct: 458 ILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEA-EAFLNTLED 516

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
               N   +  ++ G+ + N   K  EL  ++ ++ ++
Sbjct: 517 KCLEN---YSAMVDGYCKANFTRKAYELFSRLSKQGIL 551



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI--------KPDVVIHNTLFIGLFEIHQVERAFKL 53
           +++GYCK      A  L+S +  +GI        +P+ +++  L         ++RA  +
Sbjct: 525 MVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLV 584

Query: 54  FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           FD +   G+  D  TYT+ I+G C+   + E+ ++F  ++    + D+  Y+ ++DG  K
Sbjct: 585 FDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSK 644

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           +  L+ A+ L+  +    L  D+VTY+ ++ G  N G 
Sbjct: 645 TNNLQDAINLYDEMIARGLQPDIVTYTALLPGKCNFGS 682



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 47/80 (58%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++INGYC+   +  A +++++M  +GIKPDV+ +  +  G  + + ++ A  L+DEM   
Sbjct: 602 MMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIAR 661

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G+  D  TYT  + G C  G
Sbjct: 662 GLQPDIVTYTALLPGKCNFG 681



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 28/200 (14%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKN----------GYIVESVE---------LFR 90
           A+  F +++  G   +  TY   I  LC+             IV S E         LF 
Sbjct: 80  AWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFD 139

Query: 91  TLRILKCELDIQAYSCLI---DGLCKS----GRLEIALE-LFHSLPRGVLVADVVTYSIM 142
            LR    E++ +  S LI   D L K+    G  + A++ LF +  RG  V  +++ + +
Sbjct: 140 VLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRG-FVPHIMSCNFL 198

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           ++ L   G++D A  ++  ++   + PN  T+G  I    R     + +++  +M+E  V
Sbjct: 199 MNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGV 258

Query: 203 MPDASIVSIVVDLLAKNEIS 222
            P+A   S  ++ L  ++ S
Sbjct: 259 NPNAVTCSTYIEGLCSHKRS 278


>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 350

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ A+++ + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 109 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 168

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+G CKN    E+  L + L     +  +  YS L++GLC   ++E AL
Sbjct: 169 CSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERAL 228

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 229 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 288

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I ++ L + N IS
Sbjct: 289 YKDGDIRNALVIWARILRNGLEPDIISYNITLEGLCSCNRIS 330



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 113/216 (52%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ GY +  +I+    L+  M S+G +  V   NT+  GLF+  +V+    +++ M+  G
Sbjct: 5   MLKGYFRVAKIKDCFELWEMMGSEGNRS-VSSFNTMMRGLFDNGKVDEVISIWELMKESG 63

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNGYI +S+ +          LD  AYS +I+GLCK   L+ A+
Sbjct: 64  FVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRAV 123

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + +     +V  Y+ +I+GL    + + A  +F +M     +P +IT+ TLI+GF
Sbjct: 124 SVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGF 183

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +     +   L+ ++ +K + P     S++++ L 
Sbjct: 184 CKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLC 219



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 105/212 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ G
Sbjct: 39  MMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKG 98

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   Y+  I+GLCK   +  +V +   +    C+ ++  Y+ LI+GL  + + E A+
Sbjct: 99  GVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAI 158

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +        ++TY+ +I+G   +    +A++L  ++ +  + P VIT+  L+ G 
Sbjct: 159 RVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGL 218

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              ++  + ++L +++  K   PD  + +I++
Sbjct: 219 CFDHKVERALQLWNQVTSKGFKPDVQMHNILI 250



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 35  NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           N +  G F + +++  F+L++ M  +G  +   ++   + GL  NG + E + ++  ++ 
Sbjct: 3   NAMLKGYFRVAKIKDCFELWEMMGSEGNRS-VSSFNTMMRGLFDNGKVDEVISIWELMKE 61

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
                D   Y  L+ G CK+G ++ +L +     +   V D   YS MI+GL  +  +D+
Sbjct: 62  SGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDR 121

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A  +   M ++   PNV  + TLI+G +  ++    I +  +M   +  P     + +++
Sbjct: 122 AVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLIN 181

Query: 215 LLAKNEI 221
              KN++
Sbjct: 182 GFCKNKM 188



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 74/127 (58%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C + ++E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 213 MLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRW 272

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  ++GLC   R+ 
Sbjct: 273 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLEGLCSCNRIS 330

Query: 119 IALELFH 125
            A+   H
Sbjct: 331 DAILFLH 337


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 1/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSE-MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LING+C+  EI    +L  E ML KG+ PDV+ + ++  G  ++  ++ A +LFDEM   
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ + IDG  K G +  ++ ++  + +L C  D+  ++ LIDG C+ G +   
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L+  +    L  +V TY+++I+ L  + ++ +A +    ++ + V P    +  +I G
Sbjct: 375 LKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDG 434

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +  +  +   ++ +M+EK   PD    +I++
Sbjct: 435 FCKAGKVDEANFIVAEMQEKKCRPDKITFTILI 467



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  +++ A  L+ EM+S GIKP+    N L  G  ++  +  A  ++++M   G
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLG 350

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  IDG C+ G + + ++L+  +++     ++  Y+ LI+ LCK  R+  A 
Sbjct: 351 CLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR 410

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                L    +V     Y+ +I G    G++D+A+ +  +M+E    P+ ITF  LI G 
Sbjct: 411 NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGN 470

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + I   +KM E N +PD   ++ ++  L K
Sbjct: 471 CMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 2/238 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K   ++ A+ L+ E L     PDV   N L  GL  I ++++AF+ F  M   G
Sbjct: 185 LLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFG 244

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIA 120
              D  +Y   I+G C+   I +  +L +   ++K    D+  Y+ +I G CK G ++ A
Sbjct: 245 CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAA 304

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  +    +  +  T++++I G    G M  A  ++  M      P+V+TF +LI G
Sbjct: 305 SELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
           + R  E ++ ++L  +MK +N+ P+    +++++ L K E  +    +F  H +  EV
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCK-ENRIREARNFLRHLKSSEV 421



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 3/216 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ Y +  +++ A N  +E+   GIK    ++N L   L + + V+ A  LF E    
Sbjct: 149 LLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEP 208

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  ++ I I GLC+ G I ++ E F+ +    C  DI +Y+ LI+G C+   +   
Sbjct: 209 YFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKG 268

Query: 121 LELFHS--LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            +L     L +GV   DV+TY+ +I G    G M  A +LF +M  + + PN  TF  LI
Sbjct: 269 HDLLKEDMLIKGV-SPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLI 327

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            GF ++      + +  KM     +PD    + ++D
Sbjct: 328 DGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLID 363



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 100/200 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+ K   +  A+ +Y +ML  G  PDVV   +L  G     +V +  KL++EM+  
Sbjct: 325 VLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVR 384

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ +  TY + I+ LCK   I E+    R L+  +       Y+ +IDG CK+G+++ A
Sbjct: 385 NLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEA 444

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D +T++I+I G    G+M +A   F  M E    P+ IT  +LI  
Sbjct: 445 NFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISC 504

Query: 181 FIRINEPSKVIELLHKMKEK 200
            ++   P++  ++     +K
Sbjct: 505 LLKAGMPNEASQIKQAALQK 524



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+   CK    + A  ++  M S GI PD  I   L      + +++ A    +E+   
Sbjct: 114 LLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCY 173

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   ++ L K   + E+V LFR         D+ +++ LI GLC+ G ++ A
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEENAVAPNVITFGTLIH 179
            E F ++       D+V+Y+ +I+G     ++ K HDL   DM    V+P+VIT+ ++I 
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G+ ++ +     EL  +M    + P+    ++++D   K
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGK 332



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 6/177 (3%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           D+++ N   +GL +  ++     +FD M+ DG+  D+    + +    + G +  +    
Sbjct: 113 DLLMRNLCKVGLNDSAKI-----VFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFL 167

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             +     ++    Y+ L++ L K   ++ A+ LF        V DV +++I+I GL   
Sbjct: 168 NEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRI 227

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK-MKEKNVMPD 205
           G++DKA + F +M      P+++++ TLI+GF R+NE SK  +LL + M  K V PD
Sbjct: 228 GEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NGYC+   +  A+ L  +M   G++P+ V +  +     +  +   A  L D+M   
Sbjct: 276 ILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLER 335

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                +      ID LC+ G I E+ EL++ +    C  D    S LI  LCK G++  A
Sbjct: 336 QYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEA 395

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF    RG  +  ++TY+ +I G+   G++ +A  L+ DM E    PN  T+  LI G
Sbjct: 396 RKLFGEFERGA-IPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKG 454

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +I    + I +L +M +   MP+ S  +I+++ L K
Sbjct: 455 FSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCK 492



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 36/253 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   CK  ++E A+ +  EM + G+ P+VV + T+  G      +  A K+F E+   
Sbjct: 206 ILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDR 265

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL---------------------------- 92
           G   D  TYTI ++G C+ G + ++++L   +                            
Sbjct: 266 GWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEA 325

Query: 93  -RILKCELDIQ-----AYSC-LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             +L   L+ Q     A  C +ID LC++G++E A EL+  + +   + D    S +IH 
Sbjct: 326 RNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHW 385

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  +G++ +A  LF + E  A+ P+++T+ TLI G     E S+  +L   M EK   P+
Sbjct: 386 LCKEGKVWEARKLFGEFERGAI-PSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPN 444

Query: 206 ASIVSIVVDLLAK 218
           A   ++++   +K
Sbjct: 445 AFTYNMLIKGFSK 457



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 36/218 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+N + +NK  +    ++    SK G+ P+V   N L   L + + VE A K+ DEM   
Sbjct: 171 LLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAM 230

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TYT  + G    G +V + ++F                               
Sbjct: 231 GMIPNVVTYTTILGGYSSRGDMVNANKVFG------------------------------ 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF    RG L  D  TY+I+++G    G++  A  L  DM EN V PN +T+G ++  
Sbjct: 261 -ELFD---RGWL-PDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEA 315

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + +  +  +   LL  M E+  +P +++   V+D+L +
Sbjct: 316 YCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCE 353



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+  CK  ++  A  L+ E   +G  P ++ +NTL  G+ E  ++  A KL+D+M   G
Sbjct: 382 LIHWLCKEGKVWEARKLFGE-FERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKG 440

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
              +  TY + I G  K G   E + +   +   +C  +   Y+ LI+ LCK G
Sbjct: 441 YKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCKMG 494


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 36/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ +  E+  AL ++  M   G  P V  +N L +GL E  Q+ +A  + DEM   G
Sbjct: 570 IIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAG 629

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  + G    G   ++ + F  LR    E+D+  Y  L+   CKSGR++ AL
Sbjct: 630 VGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSAL 689

Query: 122 -----------------------------------ELFHSLPRGVLVADVVTYSIMIHGL 146
                                              +L   + +  L+ D+ TY+  I+  
Sbjct: 690 AVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINAC 749

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M KA ++  +ME + + PN+ T+ TLI+G+ R + P K +    +MK     PD 
Sbjct: 750 CKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDK 809

Query: 207 SIV-SIVVDLLAK 218
           ++   +V  LL++
Sbjct: 810 AVYHCLVTSLLSR 822



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K K+   A +++ +    G+KPDVV++N +      +  ++RA  +  +MQ++
Sbjct: 499 MLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKE 558

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                TRT+   I G  + G +  ++E+F  +R   C   +  Y+ LI GL +  ++  A
Sbjct: 559 RHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKA 618

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +   +    +  +  TY+ ++ G  + G  +KA   F  +    +  +V T+  L+  
Sbjct: 619 VAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKS 678

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       + +  +M  KN+  +  + +I++D  A+
Sbjct: 679 CCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWAR 716



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 91/193 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  ++  AL +   M   GIK ++  ++ L  G  ++     AF +F++  +DG
Sbjct: 465 LINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDG 524

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I   C  G +  ++ + R ++  +     + +  +I G  ++G +  AL
Sbjct: 525 LKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRAL 584

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R   +  V TY+ +I GL    QM KA  +  +M    V PN  T+ TL+ G+
Sbjct: 585 EIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGY 644

Query: 182 IRINEPSKVIELL 194
             + +  K  +  
Sbjct: 645 ASLGDTEKAFQYF 657



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  +C+   ++ A  L  EM  +GI   + I++T+  G   I   E+   +FD ++  G
Sbjct: 395 IIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECG 454

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y   I+   K G + +++E+ + +++   + +++ YS LI+G  K      A 
Sbjct: 455 FFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAF 514

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F    +  L  DVV Y+ +I      G MD+A  +   M++    P   TF  +IHGF
Sbjct: 515 SVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGF 574

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEIS 222
            R  E  + +E+   M+    +P   +  ++++ L+ K +++
Sbjct: 575 ARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMT 616



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 101/229 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  Y +  ++  A   +  M ++GI+P   ++++L         +E A     +M+ +
Sbjct: 289 LMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEE 348

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TY+I + G  K G    +   F   +     L+   Y  +I   C+   ++ A
Sbjct: 349 GIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRA 408

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    + A +  Y  M+ G    G  +K   +F  ++E    P+VI++G LI+ 
Sbjct: 409 EALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINL 468

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           + ++ + SK +E+   MK   +  +    S++++   K +   N+   F
Sbjct: 469 YTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVF 517



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 57/111 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ +  ++  A +L  +M  +G+ PD+  + +      +   +++A ++  EM+  
Sbjct: 709 ILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEAS 768

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           G+  + +TYT  I+G  +     +++  F  +++   + D   Y CL+  L
Sbjct: 769 GIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSL 819



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y   +++E AL+   +M  +GI+  +V ++ +  G  ++   + A   F+E +   
Sbjct: 325 LIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKL 384

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +   Y   I   C+   +  +  L R +     +  I  Y  ++DG    G  E  L
Sbjct: 385 PSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCL 444

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  L        V++Y  +I+     G++ KA ++   M+ + +  N+ T+  LI+GF
Sbjct: 445 IVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGF 504

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +++ + +    +     +  + PD
Sbjct: 505 LKLKDWANAFSVFEDFTKDGLKPD 528



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           + Y + +    + G +  + + F ++R    E     YS LI        +E AL     
Sbjct: 285 KEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRK 344

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +   +VTYSI++ G    G  D A   F + +E   + N + +G +I+   +I  
Sbjct: 345 MKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICN 404

Query: 187 PSKVIELLHKMKEKNVMPDASI 208
             +   L+ +M+E+ +  DA I
Sbjct: 405 MDRAEALVREMEEQGI--DAPI 424


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 121/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  +   F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++  LF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+    MP
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  ++     L + M + G++PDV  ++ L  GL +  +++ A  LFDEM   G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L     L +++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 60/116 (51%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+    K G + +A  +F ++ +  L   VV+++ +++G    G +++   L   M+
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++      L  +M +K ++P+    + ++D   KN
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKN 254


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 113/214 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +C+  +   AL+   +M+  GI+PD+V  ++L  G    + ++ A  +  +M++ 
Sbjct: 53  ILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKM 112

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D    TI ID LCKN  +V ++E+ + ++      ++  YS LI GLCKSGRL  A
Sbjct: 113 GIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADA 172

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
               H +    +  +V+T+S +I      G++ K   ++  M + ++ PNV T+ +LI+G
Sbjct: 173 ERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYG 232

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
               N   + I++L  M  K   P+    S + +
Sbjct: 233 LCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLAN 266



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 14/225 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C +  I+ A+ +  +M   GIK DVV+   L   L +   V  A ++   M+  G
Sbjct: 89  LVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRG 148

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+  I GLCK+G + ++      +   K   ++  +S LID   K G+L    
Sbjct: 149 ISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVD 208

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  + +  +  +V TYS +I+GL    ++D+A  +   M      PNV+T+ TL +GF
Sbjct: 209 SVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGF 268

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            + +     I+LL  M ++ V              A N +S N+L
Sbjct: 269 FKSSRVDDGIKLLDDMPQRGV--------------AANTVSCNTL 299



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 111/222 (50%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CKN+ +  AL +   M  +GI P+VV +++L  GL +  ++  A +   EM   
Sbjct: 123 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T++  ID   K G + +   +++ +  +  + ++  YS LI GLC   R++ A
Sbjct: 183 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 242

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   +       +VVTYS + +G +   ++D    L  DM +  VA N ++  TLI G
Sbjct: 243 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 302

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEI 221
           + +  +    + +   M    ++P+    +IV+  L A  E+
Sbjct: 303 YFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEV 344



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K  ++    ++Y  M+   I P+V  +++L  GL   ++V+ A K+ D M   G
Sbjct: 194 LIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 253

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+   +G  K+  + + ++L   +       +  + + LI G  ++G++++AL
Sbjct: 254 CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLAL 313

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    L+ ++ +Y+I++ GL+ +G+++KA   F  M++     ++IT+  +IHG 
Sbjct: 314 GVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGM 373

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI-----SLNSLPSFTVHERQE 236
            +     +  +L +K+K K V PD    +I++  L +  +     +LN    +  H RQ 
Sbjct: 374 CKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADALNRF--YQKHVRQN 431

Query: 237 EVDESNV 243
           E   + V
Sbjct: 432 ESAPAEV 438



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 1/196 (0%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I PD+   N L        Q   A     +M + G+  D  T +  ++G C +  I ++V
Sbjct: 44  ISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAV 103

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +   +  +  + D+   + LID LCK+  +  ALE+   +    +  +VVTYS +I GL
Sbjct: 104 YVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGL 163

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++  A     +M+   + PNVITF  LI  + +  + SKV  +   M + ++ P+ 
Sbjct: 164 CKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNV 223

Query: 207 -SIVSIVVDLLAKNEI 221
            +  S++  L   N +
Sbjct: 224 FTYSSLIYGLCMHNRV 239



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N E+E AL+ +  M       D++ +  +  G+ +   V+ A+ LF +++  
Sbjct: 333 IVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFK 392

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFR 90
            V  D + YTI I  L + G   E+  L R
Sbjct: 393 RVEPDFKAYTIMIAELNRAGMRTEADALNR 422


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 25/257 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G  +   IE AL+    M  KG  PD   +NT+   L +   +ERA  L  EM ++
Sbjct: 352 IMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN 411

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D+ T TI I GLCK G + E++++F  +    C+  +  Y+ LIDG  + GRLE A
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 121 LELFHSLPRG-------------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LFH +  G               V D  +   ++H +   GQ+ KA+ L   + ++ V
Sbjct: 472 RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGV 531

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD------------L 215
            P+V+T+ TLI+G  +       + L  +++ K + PD      ++D            +
Sbjct: 532 VPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMM 591

Query: 216 LAKNEISLNSLPSFTVH 232
           L +N +   S PS +++
Sbjct: 592 LFQNILQSGSSPSLSIY 608



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL LY+ M++ G  P+   +N L  GL +      A K+FDEM   G+  + + YT+ + 
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            LC  G I E+V+L  +++   C  D   Y+  + GLCK GR+  A +    L  G    
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            +  YS +I GL+   + D+    +  M E  ++P+V+ +  +I G          +  L
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 195 HKMKEKNVMPDASIVSIVVDLL 216
             MK+K  +PD    + V+ +L
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVL 392



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK      AL ++ EML +GI P+V I+  L   L    +++ A +L   M+  
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY  F+ GLCK G + E+ +    L+     L ++ YSCLIDGL ++ R +  
Sbjct: 272 GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEG 331

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLIH 179
              + ++    +  DVV Y+IMI G    G+++ A   FLD M++    P+   + T++ 
Sbjct: 332 FGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALS-FLDVMKKKGFVPDTFCYNTVLK 390

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 +  +   L  +M + N++ D++  +I++  L K
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCK 429



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 35/236 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  C   +I+ A+ L   M  KG  PD V +N    GL ++ +V  AF+    +Q  
Sbjct: 247 VLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDG 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A   + Y+  IDGL +     E    ++T+       D+  Y+ +I G  ++GR+E A
Sbjct: 307 GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDA 366

Query: 121 -------------------------------LELFHSLP----RGVLVADVVTYSIMIHG 145
                                          LE  H+L     +  LV D  T +IMI G
Sbjct: 367 LSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           L   G +D+A  +F +M E+   P V+T+  LI GF R     +   L HKM+  N
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGN 482



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 99/199 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+  +S M     +P   ++NT+   L +   +  A  L++ M   G A +  TY + +D
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMD 215

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLCK G   +++++F  +       +++ Y+ L+  LC +G+++ A++L  S+     + 
Sbjct: 216 GLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP 275

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY+  + GL   G++++A    + +++   A  +  +  LI G  +     +     
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335

Query: 195 HKMKEKNVMPDASIVSIVV 213
             M E+N+ PD  + +I++
Sbjct: 336 KTMLERNISPDVVLYTIMI 354



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  C++ ++  A  L   ++  G+ PDVV +NTL  GL +   ++ A +LF E+Q  G
Sbjct: 506 LVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   IDGL +     +++ LF+ +        +  Y+ ++  LC+  +L  A+
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-HDLF-LDMEENAVAPNVITFGTLI 178
            L+   LP+              H    DG +D    +L  +D E   ++ N  T   + 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLI- 684

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G  ++      + + H ++E  +    +  +++++ L  + 
Sbjct: 685 -GLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDR 725



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 70/161 (43%)

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           H  E  F    + +  G+ A +  +   +      G   ++V+ F  +   +       Y
Sbjct: 116 HADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVY 175

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + ++  L  SG + +AL L++ +       +  TY++++ GL   G    A  +F +M +
Sbjct: 176 NTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLD 235

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + PNV  +  L+       +  + ++LL  MK+K  +PD
Sbjct: 236 RGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPD 276



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 51/115 (44%)

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
            A++ L+     +GR   A++ F  +           Y+ ++  L + G +  A  L+  
Sbjct: 138 SAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNR 197

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           M     APN  T+  L+ G  +       +++  +M ++ +MP+  I ++++  L
Sbjct: 198 MVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSL 252


>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 376

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK+ +++ A+++ + M+  G KP+  ++N L  GL    + E A ++F EM    
Sbjct: 135 MINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCK     E+ +L + +        +  YS LI GLC   ++E+AL
Sbjct: 195 CSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKVEMAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       D+  ++I+IHGL + G+M  A  L+ DM     APN++T  TL+ GF
Sbjct: 255 QLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
            +  +    + +  ++    + PD    +I +  L + N IS
Sbjct: 315 YKDGDVRNALVIWARILRNGLQPDIISYNITLKGLCSCNRIS 356



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 103/203 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING   + + E A+ ++ EM S    P ++ +NTL  GL +  +   A+ L  EM   G
Sbjct: 170 LINGLVGSSKFEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKG 229

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY++ I GLC    +  +++L+  +     + DIQ ++ LI GLC  G++++AL
Sbjct: 230 WNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLAL 289

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L+  +       ++VT++ ++ G Y DG +  A  ++  +  N + P++I++   + G 
Sbjct: 290 SLYFDMNHWNCAPNLVTHNTLMEGFYKDGDVRNALVIWARILRNGLQPDIISYNITLKGL 349

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
              N  S  I  LH    K ++P
Sbjct: 350 CSCNRISGAILFLHDALTKKIVP 372



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+ +   I+    L+ E++ K    +V   N +  GLF   +V+    +++ M++ G
Sbjct: 31  MLNGFFRVGRIKDCFELW-ELMGKEGSRNVASFNIMMRGLFNNGKVDEVILIWELMKKSG 89

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNG + +S+ +     +    LD  AYS +I+GLCK  +L+ A+
Sbjct: 90  FVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGGVLDAFAYSAMINGLCKDSKLDKAV 149

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + +     +   Y+ +I+GL    + + A  +F +M     +P +IT+ TLI+G 
Sbjct: 150 SVLNGMIKSGCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTHCSPTIITYNTLINGL 209

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD---LLAKNEISLNSLPSFTVHERQEEV 238
            +     +  +L+ +M EK   P     S+++    L  K E++L      T    + ++
Sbjct: 210 CKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDI 269

Query: 239 DESNV 243
              N+
Sbjct: 270 QMHNI 274



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 108/214 (50%), Gaps = 1/214 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C++ +I+GA  +Y +++   +  D V++NT+  G F + +++  F+L++ M ++G + + 
Sbjct: 1   CESGDIDGAEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFELWELMGKEG-SRNV 59

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            ++ I + GL  NG + E + ++  ++      D   Y  L+ G CK+G +  +L +   
Sbjct: 60  ASFNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEI 119

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
                 V D   YS MI+GL  D ++DKA  +   M ++   PN   +  LI+G +  ++
Sbjct: 120 AEMKGGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSK 179

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               I +  +M   +  P     + +++ L K E
Sbjct: 180 FEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGE 213



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK +    A +L  EML KG  P V+ ++ L  GL   H+VE A +L+ ++   G
Sbjct: 205 LINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + + I I GLC  G +  ++ L+  +    C  ++  ++ L++G  K G +  AL
Sbjct: 265 FKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNTLMEGFYKDGDVRNAL 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            ++  + R  L  D+++Y+I + GL +  ++  A     D     + P +IT
Sbjct: 325 VIWARILRNGLQPDIISYNITLKGLCSCNRISGAILFLHDALTKKIVPTIIT 376



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 103/213 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  + ++  M   G   D + +  L  G  +   V ++  + +  +  
Sbjct: 64  IMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK+  + ++V +   +    C+ +   Y+ LI+GL  S + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL    +  +A+DL  +M E    P VIT+  LI G
Sbjct: 184 IRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               ++    ++L +++  K   PD  + +I++
Sbjct: 244 LCLCHKVEMALQLWYQVTSKGFKPDIQMHNILI 276



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI G C   ++E AL L+ ++ SKG KPD+ +HN L  GL  + +++ A  L+ +M   
Sbjct: 239 MLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
             A +  T+   ++G  K+G +  ++ ++   RIL+  L  DI +Y+  + GLC   R+ 
Sbjct: 299 NCAPNLVTHNTLMEGFYKDGDVRNALVIWA--RILRNGLQPDIISYNITLKGLCSCNRIS 356

Query: 119 IALELFHSLPRGVLVADVVT 138
            A+   H      +V  ++T
Sbjct: 357 GAILFLHDALTKKIVPTIIT 376


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYCK+  I+ AL L+ +ML K +    V +N +  GLF+  +   A ++F EM   G
Sbjct: 510 LVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESG 569

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    TY   + GLC+N    E+  L   L  +  + DI  ++ +I  + K GR + A 
Sbjct: 570 MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAK 629

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF ++    LV  ++TY +MI  L  +   + A +LF  ME+++  P+      +I   
Sbjct: 630 ELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRML 689

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +   E +K    L K+ +K ++P+A+  S+++ L + N
Sbjct: 690 LNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVN 727



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 109/212 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK KE++ A  +  +M+  G++P+ + +N L  G       + + ++F EM    
Sbjct: 194 LINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL 253

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D      F+  LCK+G I E+ ++F ++ +   + D+ +Y  L+ G   +G +    
Sbjct: 254 LVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMD 313

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +    +V D   ++ +I+     G MDK+  +F DM +  V P++ITF T+I  F
Sbjct: 314 NLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAF 373

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            R+      +E  + M +  V PD ++ S ++
Sbjct: 374 CRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLI 405



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN Y + +  +  L ++  +L  G+ PDV  +N L  G  +  +V++A  LF +M+  
Sbjct: 123 ILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQ 182

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY+  I+GLCK   + ++  + R +       +   Y+CLI G   SG  + +
Sbjct: 183 GIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKES 242

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +   +LV DV   +  +  L   G++ +A D+F  M      P+VI++G L+HG
Sbjct: 243 VRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHG 302

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +      + +  L + M  + V+PD  + + +++  A+
Sbjct: 303 YATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYAR 340



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 13/236 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG-LFEIHQVERAFKLFDEMQRD 60
           LI G C  +++  A  L S+MLSKGI P  +   T  I  L +  +V     + D +   
Sbjct: 404 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 463

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+   +DG C  G + E+V L  ++  +  E DI  Y+ L+DG CK GR++ A
Sbjct: 464 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA 523

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L LF  +    +    V+Y+I++HGL+   +   A ++F +M E+ +A ++ T+ T++ G
Sbjct: 524 LTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGG 583

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
             R N   +   LL K+   NV  D    +IV+  +            F V  RQE
Sbjct: 584 LCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM------------FKVGRRQE 627



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GY     I G  NL++ M+ +G+ PD  + NTL      +  ++++  +F++M + G
Sbjct: 299 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 358

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  T++  I   C+ G + +++E F  +       D   YSCLI G C    L  A 
Sbjct: 359 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAK 418

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           EL    L +G+    +  ++ +I+ L  +G++ +  D+   +      PN+ITF +L+ G
Sbjct: 419 ELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDG 478

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  +    + + LL  M+   V PD    + +VD   K+
Sbjct: 479 YCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKH 517



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 115/242 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  CK   +    ++   ++  G +P+++  N+L  G   +  ++ A  L D M+  G
Sbjct: 440 IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 499

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   +DG CK+G I +++ LFR +   +  L   +Y+ ++ GL ++ R  +A 
Sbjct: 500 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 559

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+FH +    +   + TY+ ++ GL  +   D+A+ L   +    V  +++TF  +I   
Sbjct: 560 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM 619

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            ++    +  EL   +    ++P      +++  L K E   ++   F+  E+     +S
Sbjct: 620 FKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDS 679

Query: 242 NV 243
            +
Sbjct: 680 RI 681



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 85  SVELFRTLRILKCE---LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +VELF+ +    C      I  Y+ LI+   ++ R ++ L +F  L R  L  DV +Y+ 
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 158

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I G   +G++DKAHDLF  MEE  + PNV+T+ +LI+G  +  E  K   +L +M    
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218

Query: 202 VMPD 205
           V P+
Sbjct: 219 VRPN 222



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 50  AFKLFDEMQRDG---VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAY 104
           A +LF  M R      A    TY I I+  C        + L    R+L+  L  D+ +Y
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILIN--CYRRARRPDLGLPVFGRLLRTGLGPDVFSY 156

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + LIDG  K G ++ A +LF+ +    ++ +VVTYS +I+GL    +MDKA  +   M  
Sbjct: 157 NALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVG 216

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             V PN +T+  LIHG+       + + +  +M    ++PD    +  +  L K+
Sbjct: 217 AGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 271



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 119 IALELFHSLPRGVL---VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           +A+ELF  + R         + TY+I+I+      + D    +F  +    + P+V ++ 
Sbjct: 98  LAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYN 157

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            LI GF +  E  K  +L +KM+E+ +MP+    S +++ L K +
Sbjct: 158 ALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTK 202


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 115/218 (52%), Gaps = 4/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
           LI  Y +    + ++ L+  M S  + P VV  N+L   L +  +   A +++DEM    
Sbjct: 154 LIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTY 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ DT TY + I G CKN  + E    FR +    C+ D+  Y+ L+DGLC++G++ IA
Sbjct: 214 GVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIA 273

Query: 121 LELFHSLPRGV--LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             L + + +    L  +VVTY+ +I G     ++++A  +  +M    + PN+IT+ TL+
Sbjct: 274 RNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLV 333

Query: 179 HGFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDL 215
            G    ++  K+ ++L +MK +    PD    + ++ L
Sbjct: 334 KGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHL 371



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 121/262 (46%), Gaps = 47/262 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC  +E+E AL +  EM S+G+KP+++ +NTL  GL E H++++   + + M+ DG
Sbjct: 297 LIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDG 356

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             + DT T+   I   C  G + E++++F +++  +   D  +YS LI  LC+ G  ++A
Sbjct: 357 GFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMA 416

Query: 121 LELFHSL-------------------------------------------PRGVLVADVV 137
            +LF  L                                            RG    D  
Sbjct: 417 EQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRG--TQDPQ 474

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           +Y+ +I G   +G  +  ++L + M      P++  +  LI GF++ ++P    E L KM
Sbjct: 475 SYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKM 534

Query: 198 KEKNVMPDASIV-SIVVDLLAK 218
            + +  P  S   S++  LL K
Sbjct: 535 LKSSYQPKTSTWHSVLAKLLEK 556



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 3/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR- 59
           +LI G+CKN  ++     + EM S     DVV +NTL  GL    +V  A  L + M + 
Sbjct: 224 VLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKK 283

Query: 60  -DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
            +G+  +  TYT  I G C    + E++ +   +     + ++  Y+ L+ GLC++ +L+
Sbjct: 284 CEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLD 343

Query: 119 IALELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              ++   +   G    D  T++ +IH     G +D+A  +F  M++  +  +  ++ TL
Sbjct: 344 KMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTL 403

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVM 203
           I    +  +     +L  ++ EK ++
Sbjct: 404 IRSLCQKGDYDMAEQLFDELFEKEIL 429



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 20  SEMLSKGIKPDVVI---HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID-- 74
           S+  S G+   ++I     T+   L  I    +A + F   Q+ G +    +Y I ++  
Sbjct: 61  SKPFSNGLLSSLLITISKTTVLRTLRLIKDPSKALRFFKWTQQKGFSHTPESYFIMLEIL 120

Query: 75  GLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           G  +N  +  +  LF   +  K   +L+ + ++ LI    ++G  + +++LF ++    +
Sbjct: 121 GRERNLNVARNF-LFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAV 179

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVI 191
              VVT++ ++  L   G+ + A +++ +M     V+P+  T+  LI GF + +   +  
Sbjct: 180 SPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGF 239

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
               +M+  N   D    + +VD L +
Sbjct: 240 RFFREMESFNCDADVVTYNTLVDGLCR 266


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   K  ++  A+ L+ E L+    P+    N L  GL  + +VE+ F+LF+ MQ  G
Sbjct: 169 LLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFG 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIA 120
              D  TY   I GLCK   +  + +L + ++    C  D+  Y+ +I G  K G+LE A
Sbjct: 229 CLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAA 288

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  + R  +   VVT++++I G    G M  A  +   M   +  P+V+TF +LI G
Sbjct: 289 SVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDG 348

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           + R  +    +++   MK +NV P+    S++++ L K+
Sbjct: 349 YCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKD 387



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 114/213 (53%), Gaps = 1/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LI+G CK  E++ A +L  E+ S+    PDV+ + ++  G  ++ ++E A  LF+EM R 
Sbjct: 239 LISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRS 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     T+ + IDG  K G +V +  +   +    C  D+  ++ LIDG C++G + + 
Sbjct: 299 GIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLG 358

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+++  +    +  ++ TYS++I+ L  D ++ +A DL   ++ + V P    +  +I G
Sbjct: 359 LKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDG 418

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +     +   ++ +M+EK   PD    +I++
Sbjct: 419 FCKAGNVDEANVIVTEMEEKRCRPDKVTFTILI 451



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-R 59
           ILI G C+  E+E    L++ M S G  PDVV +NTL  GL + ++++RA  L  E+Q R
Sbjct: 203 ILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSR 262

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +  + D  TYT  I G  K G +  +  LF  +     E  +  ++ LIDG  K G +  
Sbjct: 263 NDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVA 322

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +   +     + DVVT++ +I G    G +     ++  M+   V+PN+ T+  +I+
Sbjct: 323 AEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIIN 382

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + N   +  +LL ++K  +V P   I + V+D   K
Sbjct: 383 ALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCK 421



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++E A  L+ EM+  GI+P VV  N L  G  +I  +  A  + ++M    
Sbjct: 275 IISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYS 334

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  IDG C+ G I   ++++  ++      +I  YS +I+ LCK  R+  A 
Sbjct: 335 CIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEAR 394

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   L    +      Y+ +I G    G +D+A+ +  +MEE    P+ +TF  LI G 
Sbjct: 395 DLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGH 454

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + +++  KM      PD   +S +V  L K
Sbjct: 455 CMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLK 491



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  + +  + + A  L  E+  +  +    ++N L   L +  +V  A  LF E     
Sbjct: 134 LVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFH 193

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +T T+ I I GLC+ G + +  ELF  ++   C  D+  Y+ LI GLCK+  L+ A 
Sbjct: 194 SPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRAC 253

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +L   +  R     DV+TY+ +I G    G+++ A  LF +M  + + P V+TF  LI G
Sbjct: 254 DLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDG 313

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F +I        +  KM   + +PD    + ++D
Sbjct: 314 FGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLID 347



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+ K   +  A  ++ +M S    PDVV   +L  G      +    K++D M+  
Sbjct: 309 VLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKAR 368

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V+ +  TY++ I+ LCK+  I E+ +L R L+          Y+ +IDG CK+G ++ A
Sbjct: 369 NVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEA 428

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D VT++I+I G    G+M +A D+F  M     AP+ IT  +L+  
Sbjct: 429 NVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVAC 488

Query: 181 FIRINEPSKVIELLHKMKE 199
            ++  +PS+   ++    E
Sbjct: 489 LLKAGKPSEAFHIVQTASE 507



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 1/198 (0%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M S G   D  +   L     +  + + A KL  E+Q +     +  Y   ++ L K G 
Sbjct: 119 MRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGK 178

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           + E++ LF+         +   ++ LI GLC+ G +E   ELF+++     + DVVTY+ 
Sbjct: 179 VHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNT 238

Query: 142 MIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
           +I GL    ++D+A DL  +++  N  +P+V+T+ ++I GF ++ +      L  +M   
Sbjct: 239 LISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRS 298

Query: 201 NVMPDASIVSIVVDLLAK 218
            + P     ++++D   K
Sbjct: 299 GIEPTVVTFNVLIDGFGK 316


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ GYC   +++ A  L + M    ++PD   +NTL  GL    + + A  + D+M R G
Sbjct: 126 MVAGYCVTGQLDNARRLVAAM---PMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRG 182

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYTI ++  CK     ++V+L   +R   C  DI  Y+ +++G+C+ GR++ A+
Sbjct: 183 CVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAM 242

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E   SLP      + V+Y+I++ GL    + + A  L  +M      PNV+TF  LI   
Sbjct: 243 EFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFL 302

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R       +E+L ++ +    P++
Sbjct: 303 CRRGLVEPAMEILDQIPKYGCTPNS 327



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G C     + AL +  +ML +G  PDVV +  L     +    ++A KL DEM+  G
Sbjct: 158 LIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG----------- 110
            A D  TY + ++G+C+ G + +++E  ++L    CE +  +Y+ ++ G           
Sbjct: 218 CAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 277

Query: 111 ------------------------LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                   LC+ G +E A+E+   +P+     + ++Y+ ++H  
Sbjct: 278 KLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAF 337

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               +MD+A      M  +   P+++++ TL+    R  E    +ELLH++K+K   P  
Sbjct: 338 CKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVL 397

Query: 207 SIVSIVVDLLAK 218
              + V+D L K
Sbjct: 398 ISYNTVIDGLTK 409



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 110/217 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C+   +E A+ +  ++   G  P+ + +N +     +  +++RA    + M   
Sbjct: 297 MLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSS 356

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  +Y   +  LC+ G +  +VEL   L+   C   + +Y+ +IDGL K+G+ E A
Sbjct: 357 GCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEA 416

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL + +    L  D++TYS +  GL  +G++++A   F  +++  + PN + +  ++ G
Sbjct: 417 LELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLG 476

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
             +       I+L   M     MP+ S  +I+++ LA
Sbjct: 477 LCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLA 513



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG C+   ++ A+     + S G +P+ V +N +  GL    + E A KL  EM R 
Sbjct: 227 VVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRK 286

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  T+ + I  LC+ G +  ++E+   +    C  +  +Y+ ++   CK  +++ A
Sbjct: 287 GRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRA 346

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +     +       D+V+Y+ ++  L   G++D A +L   +++    P +I++ T+I G
Sbjct: 347 MAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 406

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +  +  + +ELL++M  K + PD    S +   L +
Sbjct: 407 LTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCR 444



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 113/230 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C  +  E A  L +EM  KG  P+VV  N L   L     VE A ++ D++ + 
Sbjct: 262 IVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKY 321

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   ++ +Y   +   CK   +  ++     +    C  DI +Y+ L+  LC+ G ++ A
Sbjct: 322 GCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAA 381

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +EL H L        +++Y+ +I GL   G+ ++A +L  +M    + P++IT+ T+  G
Sbjct: 382 VELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSG 441

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
             R     + I+   K+++  + P+  + + ++  L K   + +++  FT
Sbjct: 442 LCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFT 491



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 24  SKGIKPDVVIH-----NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
           +  + P+ V H     N     L     +E A +L + M     +A        I  LC 
Sbjct: 44  AGAVAPNAVPHRSAASNDRLRVLVRRGDLEEAIRLVESMAGLEPSA-AGPCAALIKKLCA 102

Query: 79  NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138
           +G   E+  +  +     CE D+ +Y+ ++ G C +G+L+ A  L  ++P   +  D  T
Sbjct: 103 SGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYT 154

Query: 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198
           Y+ +I GL   G+ D A  +  DM      P+V+T+  L+    + +   + ++LL +M+
Sbjct: 155 YNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMR 214

Query: 199 EKNVMPDASIVSIVVDLLAKNEIS------LNSLPSF 229
           +K   PD    ++VV+ + +          L SLPS+
Sbjct: 215 DKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSY 251


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G CK + +E A  + + M S G+ P+VV +NTL  GL    + E A  L  EM    
Sbjct: 293 IIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKD 352

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+ I +D LC+NG +   +E+   +    C  D+  Y+ +I+G CK G ++ A+
Sbjct: 353 CPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAV 412

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+       + V+Y+I++ GL +  +   A +L   M +    PN +TF TLI+  
Sbjct: 413 MLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFL 472

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     + IELL +M      PD    S V+D L K
Sbjct: 473 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 509



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+CK   I+ A+ L   M + G +P+ V +  +  GL    +   A +L  +M + G
Sbjct: 398 VINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQG 457

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+   I+ LCK G + +++EL + + +  C  D+ +YS +IDGL K+G  + AL
Sbjct: 458 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEAL 517

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + + +  +  + + YS +   L  +G+++K   +F ++++  V  + + +  +I   
Sbjct: 518 ELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSL 577

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  E  + IE L  M     +P+ S  +I++  LA 
Sbjct: 578 CKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLAS 614



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  C+N  ++  + +  +ML  G  PDV+ + T+  G  +   ++ A  L   M   
Sbjct: 362 ILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAAC 421

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T +YTI + GLC     V++ EL   +    C  +   ++ LI+ LCK G +E A
Sbjct: 422 GCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 481

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL--- 177
           +EL   +       D+++YS +I GL   G  D+A +L   M +  ++PN I + ++   
Sbjct: 482 IELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASA 541

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + G  RIN   KVI++   +++  V  DA + + V+  L K
Sbjct: 542 LSGEGRIN---KVIQMFENIQDTTVRSDAVLYNAVISSLCK 579



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +++   C    ++ A+ L  ++L S G +PDVV +N +  GL    +      L +EM  
Sbjct: 186 LVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVA 245

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   +  T++  I  LC+NG      E+   +    C  D++ Y+ +IDG+CK  RLE+
Sbjct: 246 AGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEV 305

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  + + +P   L  +VV Y+ ++ GL +  + ++A  L  +M +     + +TF  L+ 
Sbjct: 306 ARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVD 365

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +     +VIE+L +M E   MPD    + V++   K
Sbjct: 366 FLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCK 404



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 103/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   C+N   E    ++++M   G  PDV ++ T+  G+ +  ++E A  + + M   G
Sbjct: 258 LIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYG 317

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +   Y   + GLC      E+  L   +    C LD   ++ L+D LC++G ++  +
Sbjct: 318 LSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVI 377

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +     + DV+TY+ +I+G   +G +D+A  L   M      PN +++  ++ G 
Sbjct: 378 EVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGL 437

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                     EL+ +M ++   P+    + +++ L K
Sbjct: 438 CSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 474



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 10/235 (4%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ GYC+  +            S  + P+   +  L   L    ++  A  + D+M R G
Sbjct: 85  MVAGYCRAGQ---LAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRG 141

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A     Y + ++  C+      +V + R L    C LD+   + ++  +C  G ++ A+
Sbjct: 142 CAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAV 201

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   L P      DVV+Y+ ++ GL    +     DL  +M      PN++TF TLI  
Sbjct: 202 RLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGH 261

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS------LNSLPSF 229
             R     +V E+  +M E    PD  + + ++D + K E        LN +PS+
Sbjct: 262 LCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSY 316



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN  CK   +E A+ L  +ML  G  PD++ ++T+  GL +    + A +L + M + G
Sbjct: 468 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKG 527

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +T  Y+     L   G I + +++F  ++      D   Y+ +I  LCK G  + A+
Sbjct: 528 MSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAI 587

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           E    +     V +  TY+I+I GL ++G + +A ++  ++
Sbjct: 588 EFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTEL 628



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 36/254 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C    I  AL +  +M  +G  P   +++              A  +  ++   G
Sbjct: 117 LVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRG 176

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
            A D     + +  +C  G + E+V L R L     CE D+ +Y+ ++ GLC + R    
Sbjct: 177 CALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHV 236

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP----------- 169
            +L   +       ++VT+S +I  L  +G  ++ H++   M E+  AP           
Sbjct: 237 QDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDG 296

Query: 170 ------------------------NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                                   NV+ + TL+ G    +   +   LL +M +K+   D
Sbjct: 297 VCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLD 356

Query: 206 ASIVSIVVDLLAKN 219
               +I+VD L +N
Sbjct: 357 DVTFNILVDFLCQN 370


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC++K +E    L S M S+ I PDV  ++ L  GL +  +VE A  LFDEM   G
Sbjct: 267 LISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG 326

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CK+G I  ++  F  ++      D+  Y+ LI+GLC+ G L+ A 
Sbjct: 327 LVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEAR 386

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +       D +T++ ++ G   DG MD A ++   M E  +  + + F  LI G 
Sbjct: 387 KLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGL 446

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R         +L  M      PD    ++V+D   K
Sbjct: 447 CRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCK 483



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 8/223 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK  ++  A  ++ E+  +G++P VV  NTL  G      VE  F L   M+ +
Sbjct: 231 ILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESE 290

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ----AYSCLIDGLCKSGR 116
            ++ D  TY+  I+GLCK   + E+  LF  +    CE+ +      ++ LIDG CK G+
Sbjct: 291 RISPDVFTYSALINGLCKESRVEEANGLFDEM----CEMGLVPNGVTFTTLIDGQCKHGK 346

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
           +++AL  F  +    +  D++TY+ +I+GL  DG + +A  L  +M  N   P+ ITF T
Sbjct: 347 IDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTT 406

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           L+ G  +  +    +E+  +M E+ +  D    + ++  L ++
Sbjct: 407 LMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRD 449



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 116/223 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+ +I+ AL  +  M  +GI+PD++ +N L  GL     ++ A KL +EM  +G
Sbjct: 337 LIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNG 396

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  +DG CK+G +  ++E+   +     ELD  A++ LI GLC+ GR+  A 
Sbjct: 397 FKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAE 456

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +       D  TY+++I      G +     L  +M+ +   P V+T+  L++GF
Sbjct: 457 RMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGF 516

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
            +  +      LLH M    V+P+    +I++D   K+  S++
Sbjct: 517 CKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVD 559



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%)

Query: 9   NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
           N++       Y E+L  G  P+V + N L  G  +I  V  A  +FDE+ R G+     +
Sbjct: 204 NQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVS 263

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           +   I G C++  + E   L   +   +   D+  YS LI+GLCK  R+E A  LF  + 
Sbjct: 264 FNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMC 323

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              LV + VT++ +I G    G++D A   F  M++  + P++IT+  LI+G  R  +  
Sbjct: 324 EMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLK 383

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +  +LL++M      PD    + ++D   K+
Sbjct: 384 EARKLLNEMIGNGFKPDKITFTTLMDGCCKD 414



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +CK  +++    L  EM   G  P VV +N L  G  +  Q++ A  L   M   
Sbjct: 476 MVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNM 535

Query: 61  GVAADTRTYTIFIDGLCKNGYIVE 84
            V  +  T+ I +DG CK+G  V+
Sbjct: 536 EVVPNDITFNILLDGHCKHGSSVD 559


>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 376

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL++ + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   ++E AL
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 255 QLWNQVISKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I +  L + N IS
Sbjct: 315 YKDGDIRNALMIWARILRNGLEPDIISYNITLKGLCSCNRIS 356



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 34/245 (13%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------------ 54
           C++ +I+GA  +Y E++   + PD V++N +  G F + +++  F+L+            
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 55  ---------------DE-------MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
                          DE       M+  G   D+ TY I + G CKNGYI +S+ +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 LD  AYS +I+GLCK   L+ AL + + + +     +V  Y+ +I+GL    + 
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKF 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M     +P +IT+ TLI+G  +     +   L+ ++ +K + P     S++
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 213 VDLLA 217
           +  L 
Sbjct: 241 MKGLC 245



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CKN+    A NL  E+L KG+ P V+ ++ L  GL   H+VERA +L++++   G
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + + I I GLC  G +  ++ L+  +   KC  ++ +++ L++G  K G +  AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
            ++  + R  L  D+++Y+I + GL +  ++  A     D     + P  IT
Sbjct: 325 MIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVPTKIT 376



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  ++ +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               ++  + ++L +++  K   PD  + +I++
Sbjct: 244 LCLDHKVERALQLWNQVISKGFKPDVQMHNILI 276



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 74/127 (58%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C + ++E AL L+++++SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 239 MLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  + GLC   R+ 
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALMIWA--RILRNGLEPDIISYNITLKGLCSCNRIS 356

Query: 119 IALELFH 125
            A+   H
Sbjct: 357 DAILFLH 363


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 119/217 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK  EIE A +L+ EM   G+  +   +  L  GLF+    ++ F+++++MQ DG
Sbjct: 204 LIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDG 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY   ++  CK+G   ++ +LF  +R      +I  Y+ LI GLC+  +   A 
Sbjct: 264 VFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEAN 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +  +++TY+ +I G    G++ KA  L  D++   ++P+++T+  L+ GF
Sbjct: 324 KVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  + S   +++ +M+E+ + P     +I++D  A+
Sbjct: 384 CKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFAR 420



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 108/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  KN   +    +Y +M   G+ P++  +N +     +  + + AFKLFDEM+  
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRER 297

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ +  TY   I GLC+     E+ ++   ++      ++  Y+ LIDG C  G+L  A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   L    L   +VTY+I++ G    G    A  +  +MEE  + P+ IT+  LI  
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDT 417

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F R++   K I+L   M+E  + PD    S+++
Sbjct: 418 FARMDNMEKAIQLRSPMEELGLTPDVHTYSVLI 450



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 6/238 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N +CK+   + A  L+ EM  +G+  ++V +NTL  GL    +   A K+ D+M+ DG
Sbjct: 274 VMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDG 333

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG C  G + +++ L R L+       +  Y+ L+ G CK G    A 
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAG 393

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   +    +    +TY+I+I        M+KA  L   MEE  + P+V T+  LIHGF
Sbjct: 394 KVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGF 453

Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
               ++NE S++ +L   M  K + P+  I + +V    K   S  +L  F   E +E
Sbjct: 454 CIKGQMNEASRLFKL---MVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 109/202 (53%), Gaps = 1/202 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN Y +++ ++ +++ ++EM+ KG  P     N L   +       + ++ F+E  + 
Sbjct: 99  VMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNE-SKI 157

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  ++ I I G C+ G I +S +L   LR      ++  Y+ LIDG CK G +E A
Sbjct: 158 KVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  + +  LVA+  TY+++IHGL+ +G   +  +++  M+E+ V PN+ T+  +++ 
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQ 277

Query: 181 FIRINEPSKVIELLHKMKEKNV 202
             +        +L  +M+E+ V
Sbjct: 278 HCKDGRTKDAFKLFDEMRERGV 299



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 2/224 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   ++  AL+L  ++ S+G+ P +V +N L  G  +      A K+  EM+  G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TYTI ID   +   + ++++L   +  L    D+  YS LI G C  G++  A 
Sbjct: 404 IKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    L  + V Y+ M+ G   +G   +A  LF +MEE  + PNV ++  +I   
Sbjct: 464 RLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVL 523

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
            +  +  +   L+ KM +  + P  SI++++    AKN+  ++S
Sbjct: 524 CKERKSKEAEGLVEKMIDTGIDPSDSILNLISR--AKNDSHVSS 565



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 83/170 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CK  +  GA  +  EM  +GIKP  + +  L      +  +E+A +L   M+  
Sbjct: 378 ILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEEL 437

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY++ I G C  G + E+  LF+ +   K E +   Y+ ++ G CK G    A
Sbjct: 438 GLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRA 497

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           L LF  +    L  +V +Y  MI  L  + +  +A  L   M +  + P+
Sbjct: 498 LRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS 547



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           DV ++ I+I G    G+++K+ DL +++ E   +PNV+ + TLI G  +  E  K  +L 
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
            +M +  ++ +    ++++  L KN I       F ++E+ +E
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQ---GFEMYEKMQE 261


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 101/198 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+ +C +     A  L   M+ K I PD+V  + L     +  +V  A +++ EM R  
Sbjct: 51  MIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWS 110

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +   T TY   IDG CK   + ++  +  ++    C  D+  +S LI+G CK+ R++  +
Sbjct: 111 IFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGM 170

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R  +VA+ VTY+ +IHG    G +D A DL  +M    VAP+ ITF  ++ G 
Sbjct: 171 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGL 230

Query: 182 IRINEPSKVIELLHKMKE 199
               E  K   +L  +++
Sbjct: 231 CSKKELRKAFAILEDLQK 248



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 1/221 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK+     A NL++EM  KGI P+V+ +N +        +   A +L   M    
Sbjct: 16  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 75

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  T++  I+   K   + E+ E+++ +           Y+ +IDG CK  R++ A 
Sbjct: 76  INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAK 135

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  S+       DVVT+S +I+G     ++D   ++F +M    +  N +T+ TLIHGF
Sbjct: 136 RMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGF 195

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
            ++ +     +LL++M    V PD  +   ++  L +K E+
Sbjct: 196 CQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKEL 236



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 84/164 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN + K +++  A  +Y EML   I P  + +N++  G  +  +V+ A ++ D M   G
Sbjct: 86  LINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKG 145

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  T++  I+G CK   +   +E+F  +       +   Y+ LI G C+ G L+ A 
Sbjct: 146 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 205

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
           +L + +    +  D +T+  M+ GL +  ++ KA  +  D++++
Sbjct: 206 DLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKS 249



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 87/187 (46%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           IK DVVI   +   L +      A  LF EM   G+  +  TY   ID  C +G   ++ 
Sbjct: 6   IKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDAD 65

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +L R +   +   DI  +S LI+   K  ++  A E++  + R  +    +TY+ MI G 
Sbjct: 66  QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGF 125

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++D A  +   M     +P+V+TF TLI+G+ +       +E+  +M  + ++ + 
Sbjct: 126 CKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT 185

Query: 207 SIVSIVV 213
              + ++
Sbjct: 186 VTYTTLI 192



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
           M +  + AD    T  +D LCK+G  + +  LF  +       ++  Y+C+ID  C SGR
Sbjct: 1   MGQSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGR 60

Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
              A +L   +    +  D+VT+S +I+    + ++ +A +++ +M   ++ P  IT+ +
Sbjct: 61  WSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 120

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT-VHER 234
           +I GF + +       +L  M  K   PD    S +++   K +   N +  F  +H R
Sbjct: 121 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR 179


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 110/215 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC+   ++ AL + + M   G++ D+  +NTL  GL  +++++ A  L   M   G
Sbjct: 358 MIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMG 417

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  I   CK+G +VE+  LFR +        +  Y+ +IDG  K G +  A 
Sbjct: 418 VVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAE 477

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +   V DV TY+ ++HG   +G++D A  LF +M++    PNV+ +  LI G 
Sbjct: 478 RFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 537

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +        +L   M +  ++PD S+ S +V  L
Sbjct: 538 AKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 572



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN YC+   +  A  +  E +  G++P+   +  L  G  +I Q+E A  L  +MQ  G
Sbjct: 288 VINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQG 347

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   +   IDG C+ G + +++++   +  +  ELDI  Y+ L  GLC+  RL+ A 
Sbjct: 348 VGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAK 407

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L H +    +V + VTY+ +I     DG M +A  LF +M E    P+V+T+  +I G+
Sbjct: 408 TLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGY 467

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +     +      +M++K  +PD
Sbjct: 468 TKKGSIREAERFRKEMEKKGFVPD 491



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+CK  ++E A  L ++M  +G+  + +I NT+  G      V+ A K+   M++ 
Sbjct: 322 VLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKM 381

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY     GLC+   + E+  L   +  +    +   Y+ LI   CK G +  A
Sbjct: 382 GVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEA 441

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +        VVTY++MI G    G + +A     +ME+    P+V T+ +L+HG
Sbjct: 442 RRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHG 501

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +    ++L  +MK++   P+    + ++  LAK
Sbjct: 502 HCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAK 539



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK+ ++  A  L+ EM  KG  P VV +N +  G  +   +  A +   EM++ G
Sbjct: 428 LISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKG 487

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   + G C NG +  +++LF  ++    E ++ AY+ LI GL K GR E A 
Sbjct: 488 FVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAF 547

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
           +L+  + +  L+ D   YS ++  L+ D + D
Sbjct: 548 QLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 579



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 3/200 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G CK+  ++ A  L  +M   G+  + + +N+L           R  ++ + M+ +
Sbjct: 182 VVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENE 241

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A   TYTI +D L     I +   LF  ++      D+  Y+ +I+  C++G +  A
Sbjct: 242 GIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRA 301

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++        +  +  TY ++I+G    GQM+ A  L  DM+   V  N I F T+I G
Sbjct: 302 AKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDG 361

Query: 181 FIR---INEPSKVIELLHKM 197
           + R   +++  K+   + KM
Sbjct: 362 YCRKGMVDDALKIKAAMEKM 381



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 100/218 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ Y + K+      +   M ++GI+  V  +  L   L     + +   LF+EM+ + 
Sbjct: 218 LLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANN 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT  I+  C+ G +  + ++         E + + Y  LI+G CK G++E A 
Sbjct: 278 VVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAE 337

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  + + ++ MI G    G +D A  +   ME+  V  ++ T+ TL  G 
Sbjct: 338 MLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGL 397

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R+N   +   LLH M E  V+P+    + ++ +  K+
Sbjct: 398 CRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKD 435



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+GY K   I  A     EM  KG  PDV  + +L  G     +V+ A KLF+EM++ 
Sbjct: 462 VMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQR 521

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
           G   +   YT  I GL K G    + +L+  +  LK  L  D   YS L+  L    R +
Sbjct: 522 GTEPNVVAYTALISGLAKEGRSEAAFQLYDDM--LKAGLIPDDSLYSALVGSLHTDNRKD 579

Query: 119 I 119
           +
Sbjct: 580 V 580



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%)

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           A S ++DGLCKSGR++ A  L   +PR  +  + + Y+ ++          +  ++   M
Sbjct: 179 AASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM 238

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           E   +   V T+  L+       + SKV  L ++MK  NV+ D  + + V++
Sbjct: 239 ENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVIN 290



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 114 SGRLEIALELFH----SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           +GRL  A  L      S P  V     +  S+++ GL   G++D A  L  DM  + V+ 
Sbjct: 154 AGRLADAAGLLERALGSCPGSV---SPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSL 210

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           N + + +L+  ++R  +  +V E+L  M+ + +       +I+VD L+
Sbjct: 211 NALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLS 258


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 38/239 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   ++ A  + +E   +   PDVV +NTL   LF++ +V+ A   F +M  +G
Sbjct: 138 LVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG 197

Query: 62  VA-------------------ADTR----------------TYTIFIDGLCKNGYIVESV 86
                                AD                  TY++ IDGLCK+  + E+ 
Sbjct: 198 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQ 257

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +L   +    C  D+ AY+ L+ G   +GRL+ AL L   +     + DVVTY+++I  L
Sbjct: 258 QLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 317

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              G++D AH++F ++  N  +PNV+T+  LI G+ R    S+V E    M+E    P+
Sbjct: 318 CKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCR---ASRVDEGGKVMREMACRPN 373



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFD-EMQR 59
           +LI G+C   +++ A +L  EM  +G++ +    + +  GL    +V +A + FD  ++ 
Sbjct: 30  VLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLEL 89

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLE 118
                D  +YT  I+GLCK G +  + +LFR +     C  +   Y+ L+DGLCK  RL+
Sbjct: 90  AHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLD 149

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +     +     DVVTY+ ++  L+  G++D+A   F  M E    P +++F  +I
Sbjct: 150 AARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAII 209

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G  R    +  +E+ ++M +++  P+    S+V+D L K++
Sbjct: 210 TGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSD 251



 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 3/205 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+ + +  AL +++EM+ +   P++V ++ +  GL +  Q++ A +L D M  +G
Sbjct: 208 IITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  + G    G +  ++ L R +    C  D+  Y+ +ID LCK GR++ A 
Sbjct: 268 CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH 327

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L       +VVTYS +I G     ++D+   +   M E A  PNV+T+ T+I G 
Sbjct: 328 EIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGL 384

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
             ++   +   +  +M E   +PDA
Sbjct: 385 SMVDRNEEAYGMFREMSECGFVPDA 409



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+ +++ A  L   M+S+G +PD+V +  L +G     +++ A  L   M   
Sbjct: 242 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 301

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT+ ID LCK G + ++ E+FR L   KC  ++  YS LI G C++ R++  
Sbjct: 302 GCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEG 361

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       +VVTY+ MI GL    + ++A+ +F +M E    P+  T+  L   
Sbjct: 362 GKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRA 418

Query: 181 FIRINEPSKVI 191
              I++P  V+
Sbjct: 419 LRMIDQPPHVL 429



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LING CK   ++ A +L+ +M++ G  +P+   +N L  GL +  +++ A  +  E ++ 
Sbjct: 102 LINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKR 161

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D  TY   +  L + G + E++  F  +        + +++ +I GLC++ RL  A
Sbjct: 162 DFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADA 221

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+F+ +       ++VTYS++I GL    Q+D+A  L   M      P+++ +  L+ G
Sbjct: 222 LEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLG 281

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F         + LL +M  +  +PD    ++V+D L K
Sbjct: 282 FSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 3/192 (1%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL L+ E   + +    V +N L  G      ++ AF L  EM  +G+  + RT +I + 
Sbjct: 10  ALQLFRENPCQ-LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQ 68

Query: 75  GLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-PRGVL 132
           GLC+ G + +++E F  +L +   + D+ +Y+ LI+GLCK GR++ A +LF  +   G  
Sbjct: 69  GLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGC 128

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
             +  TY+ ++ GL    ++D A  +  +  +   AP+V+T+ TL+    ++    + + 
Sbjct: 129 RPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 188

Query: 193 LLHKMKEKNVMP 204
              +M E+  +P
Sbjct: 189 TFTQMTEEGYVP 200



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           +A +LF E     + A + TY + I G C    +  +  L R + +   + + +  S ++
Sbjct: 9   QALQLFRENPCQ-LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIIL 67

Query: 109 DGLCKSGRLEIALELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENA 166
            GLC+ GR+  ALE F  SL       DVV+Y+ +I+GL   G++D A DLF  M     
Sbjct: 68  QGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGG 127

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             PN  T+  L+ G  + +       ++ + ++++  PD
Sbjct: 128 CRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPD 166


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 118/224 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK  +++ AL  +  ML++G++PD+V +N L  GL ++  ++ A +L +EM   
Sbjct: 252 VLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSAS 311

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+T  IDG CK G +  ++E+ R +     ELD  A++ LI GLC+ GR+  A
Sbjct: 312 GLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDA 371

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D  TY++++      G +     L  +M+ +   P V+T+  L++G
Sbjct: 372 ERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNG 431

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
             +  +      LL  M    V P+    +I+++  +K+  S++
Sbjct: 432 LCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVD 475



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 118/219 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G+CK   +  A  ++ E+  +G++P VV  NTL  G  +   VE  F+L   M+ +
Sbjct: 147 VLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESE 206

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  D  T++  I+GLCK G + E   LF  +       +   ++ LIDG CK G++++A
Sbjct: 207 RVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLA 266

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+ F  +    +  D+VTY+ +I+GL   G + +A  L  +M  + + P+ ITF TLI G
Sbjct: 267 LKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDG 326

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             +  +    +E+  +M E+ +  D    ++++  L ++
Sbjct: 327 CCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRD 365



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 103/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK   +E    L   M S+ + PDV   + L  GL +  +++    LFDEM   G
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T+ IDG CK G +  +++ F+ +       D+  Y+ LI+GLCK G L+ A 
Sbjct: 243 LVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    L  D +T++ +I G    G M+ A ++   M E  +  + + F  LI G 
Sbjct: 303 RLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R         +L  M      PD    ++VVD   K
Sbjct: 363 CRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCK 399



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 102/208 (49%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           E+E +   Y E+L  G  P+    N L  G  ++  V  A  +FDE+ + G+     ++ 
Sbjct: 122 ELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFN 181

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             I G CK G + E   L   +   +   D+  +S LI+GLCK GRL+    LF  +   
Sbjct: 182 TLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK 241

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            LV + VT++++I G    G++D A   F  M    V P+++T+  LI+G  ++ +  + 
Sbjct: 242 GLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEA 301

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
             L+++M    + PD    + ++D   K
Sbjct: 302 RRLVNEMSASGLRPDRITFTTLIDGCCK 329



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 102/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK   ++    L+ EM  KG+ P+ V    L  G  +  +V+ A K F  M   G
Sbjct: 218 LINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQG 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I+GLCK G + E+  L   +       D   ++ LIDG CK G +E AL
Sbjct: 278 VRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESAL 337

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  D V ++++I GL  DG++  A  +  DM      P+  T+  ++  F
Sbjct: 338 EIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCF 397

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +        +LL +M+    +P     + +++ L K
Sbjct: 398 CKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCK 434


>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 376

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL++ + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   ++E AL
Sbjct: 195 CPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +    + +  ++    + PD
Sbjct: 315 YKDGDIRNALVIWARILRNGLEPD 338



 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 34/241 (14%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------------ 54
           C++ +I+GA  +Y E++   + PD V++N +  G F + +++  F+L+            
Sbjct: 1   CESGDIDGAERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 55  ---------------DE-------MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
                          DE       M+  G   D+ TY I + G CKNGYI +S+ +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 LD  AYS +I+GLCK   L+ AL + + + +     +V  Y+ +I+GL    + 
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKF 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M      P +IT+ TLI+G  +     +   L+ ++ +K + P     S++
Sbjct: 181 EDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 213 V 213
           +
Sbjct: 241 M 241



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  ++ +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               ++  + ++L +++  K   PD  + +I++
Sbjct: 244 LCLDHKVERALQLWNQVTSKGFKPDVQMHNILI 276



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C + ++E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 239 MLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  + GLC   R+ 
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLKGLCSCKRIS 356

Query: 119 IALELFH 125
            A+   H
Sbjct: 357 DAILFLH 363


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC+   ++ A  L + M    + PD   +  +  GL +  +V  A  L D+M + G
Sbjct: 115 LVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG 171

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT+ ++ +CK+    E++ +   +R   C  +I  Y+ +I+G+C+ GR++ A 
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+ + L       D+V+Y+ ++ GL    + D    LF +M +    PN +TF  L+  F
Sbjct: 232 EILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFF 291

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R     + I++L +M +    P+ ++ +IV++ + K 
Sbjct: 292 CRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQ 329



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C+    E A  L  EM+ K   P+ V  NT    L +   +E+A KL + M   G
Sbjct: 357 VLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG 416

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   + G C  G +  ++ELF  L    CE +   Y+ L+ GLC + RL+ A 
Sbjct: 417 CSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAA 473

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +     + VT+++++      G +++A +L   M E+   PN+ITF TL+ G 
Sbjct: 474 ELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGI 533

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + +ELLH +  K V  D    S VVD+L++ +
Sbjct: 534 TKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSRED 572



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 3/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  +C+   +E A+ +  +M   G  P+  + N +   + +  +V+ A+   + M   
Sbjct: 286 MLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMY 345

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   DT +YT  + GLC+ G    + EL   +    C  +   ++  I  LC+ G +E A
Sbjct: 346 GCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQA 405

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++L   +P       +VTY+ ++HG    G++D A +LF ++      PN IT+ TL+ G
Sbjct: 406 IKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTG 462

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                      ELL  M +K+   +A   +++V    +
Sbjct: 463 LCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQ 500



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C    +  AL L  +ML +G +P VV +  L   + +      A  + DEM+  G
Sbjct: 147 IIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG 206

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC--------- 112
              +  TY + I+G+C+ G + ++ E+   L     + DI +Y+ ++ GLC         
Sbjct: 207 CTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVK 266

Query: 113 --------------------------KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                     + G +E A+++   + +     +    +I+I+ +
Sbjct: 267 VLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAI 326

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++D A+D   +M      P+ I++ T++ G  R        ELL +M  KN  P+ 
Sbjct: 327 CKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNE 386

Query: 207 SIVSIVVDLLAK 218
              +  + +L +
Sbjct: 387 VTFNTFICILCQ 398



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 35/232 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-------------- 46
           ++ING C+   ++ A  + + + S G +PD+V + T+  GL    +              
Sbjct: 216 VIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDK 275

Query: 47  ---------------------VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                                VERA ++  +M + G   +T    I I+ +CK G + ++
Sbjct: 276 KCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDA 335

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            +    + +  C  D  +Y+ ++ GLC++GR E A EL   + R     + VT++  I  
Sbjct: 336 YDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICI 395

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           L   G +++A  L   M E   +  ++T+  L+HGF         +EL + +
Sbjct: 396 LCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL 447



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C    ++ AL L++ +     +P+ + + TL  GL    +++ A +L   M +  
Sbjct: 427 LVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKD 483

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+ + +   C+ G++ E++EL   +    C  ++  ++ L+DG+ K    E AL
Sbjct: 484 CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEAL 543

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL H L    +  D +TYS ++  L  + + ++A  +   +++  + P V  +  ++   
Sbjct: 544 ELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFAL 603

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +  E  + I+    M     MP+ S   I+++ LA
Sbjct: 604 CKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLA 639



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A +L +     G A D    T  I  LC+ G   ++  + RT       +D+ AY+ L+ 
Sbjct: 58  AARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVA 117

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G C+ GRL+ A  L  S+P   +  D  TY+ +I GL + G++  A  L  DM +    P
Sbjct: 118 GYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQP 174

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +V+T+  L+    + +   + + +L +M+ K   P+    +++++ + +
Sbjct: 175 SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCR 223



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 101/212 (47%), Gaps = 3/212 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+   IE A+ L   M   G    +V +N L  G     +V+ A +LF+ +       +T
Sbjct: 397 CQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNT 453

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  + GLC    +  + EL   +    C L+   ++ L+   C+ G +E A+EL + 
Sbjct: 454 ITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQ 513

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +       +++T++ ++ G+  D   ++A +L   +    V+ + IT+ +++    R + 
Sbjct: 514 MMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDR 573

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + I++LH +++  + P   + + ++  L K
Sbjct: 574 TEEAIQMLHAVQDMGMRPKVGMYNKILFALCK 605



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 81/156 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++ +C+   +E A+ L ++M+  G  P+++  NTL  G+ +    E A +L   +   
Sbjct: 493 VLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSK 552

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ DT TY+  +D L +     E++++   ++ +     +  Y+ ++  LCK    + A
Sbjct: 553 GVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQA 612

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           ++ F  +     + +  TY I+I GL ++G + +A 
Sbjct: 613 IDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAR 648


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N +C+  +   AL+   +M+  GI+PD+V  ++L  G    + ++ A  +  +M++ 
Sbjct: 128 ILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKM 187

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D    TI ID LCKN  +V ++E+ + ++      ++  YS LI GLCKSGRL  A
Sbjct: 188 GIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADA 247

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
               H +    +  +V+T+S +I      G++ K   ++  M + ++ PNV T+ +LI+G
Sbjct: 248 ERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYG 307

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               N   + I++L  M  K   P+    S + +   K+ 
Sbjct: 308 LCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSS 347



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 14/225 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C +  I+ A+ +  +M   GIK DVV+   L   L +   V  A ++   M+  G
Sbjct: 164 LVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRG 223

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TY+  I GLCK+G + ++      +   K   ++  +S LID   K G+L    
Sbjct: 224 ISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVD 283

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  + +  +  +V TYS +I+GL    ++D+A  +   M      PNV+T+ TL +GF
Sbjct: 284 SVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGF 343

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            + +     I+LL  M ++ V              A N +S N+L
Sbjct: 344 FKSSRVDDGIKLLDDMPQRGV--------------AANTVSCNTL 374



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 111/222 (50%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CKN+ +  AL +   M  +GI P+VV +++L  GL +  ++  A +   EM   
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  T++  ID   K G + +   +++ +  +  + ++  YS LI GLC   R++ A
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++   +       +VVTYS + +G +   ++D    L  DM +  VA N ++  TLI G
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 377

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEI 221
           + +  +    + +   M    ++P+    +IV+  L A  E+
Sbjct: 378 YFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEV 419



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K  ++    ++Y  M+   I P+V  +++L  GL   ++V+ A K+ D M   G
Sbjct: 269 LIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 328

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY+   +G  K+  + + ++L   +       +  + + LI G  ++G++++AL
Sbjct: 329 CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLAL 388

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    L+ ++ +Y+I++ GL+ +G+++KA   F  M++     ++IT+  +IHG 
Sbjct: 389 GVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGM 448

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI-----SLNSLPSFTVHERQE 236
            +     +  +L +K+K K V PD    +I++  L +  +     +LN    +  H RQ 
Sbjct: 449 CKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADALNRF--YQKHVRQN 506

Query: 237 EVDESNV 243
           E   + V
Sbjct: 507 ESAPAEV 513



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 1/196 (0%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           I PD+   N L        Q   A     +M + G+  D  T +  ++G C +  I ++V
Sbjct: 119 ISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAV 178

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            +   +  +  + D+   + LID LCK+  +  ALE+   +    +  +VVTYS +I GL
Sbjct: 179 YVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGL 238

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G++  A     +M+   + PNVITF  LI  + +  + SKV  +   M + ++ P+ 
Sbjct: 239 CKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNV 298

Query: 207 -SIVSIVVDLLAKNEI 221
            +  S++  L   N +
Sbjct: 299 FTYSSLIYGLCMHNRV 314



 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N E+E AL+ +  M       D++ +  +  G+ +   V+ A+ LF +++  
Sbjct: 408 IVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFK 467

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFR 90
            V  D + YTI I  L + G   E+  L R
Sbjct: 468 RVEPDFKAYTIMIAELNRAGMRTEADALNR 497


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K+  ++ A +L+ EM+  G +PDV+ H  +  GL +    E+A K F+EM R G
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  I GL K G +  +  + + +    C  D   Y CL+DG CK GRL+ A 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-HDLFLDMEENAVAPNVITFG---TL 177
           +L   L +     ++  YS +++GL + G ++K   DLF   E++  A   +  G   ++
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLF---EQSKAAAETLDPGLCCSI 512

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I G  +     +   +  +M  +   PDA+  +I+++ L ++ 
Sbjct: 513 IVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSR 555



 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 99/211 (46%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K ++ A  ++ +M   G  PD + +NT+  GL +    + A K+ D M          
Sbjct: 237 KAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEV 296

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY I ++ LCK G +  + ELFR +       +   Y+ LI G  KSGR++ A  LF  +
Sbjct: 297 TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV+T+++MI GL   G  ++A   F +M      PNV+T+ T+I G  +I   
Sbjct: 357 VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    ++  M      PD+     ++D   K
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNKE--IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           ILING C+++E  +E A  L  ++   G  PD V +  L IGL +I +V+RA K+ +E  
Sbjct: 546 ILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEAS 605

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G  AD   YT    GLC  G +  +V LF+ +       D  AY C+I+GL K  +LE
Sbjct: 606 SRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLE 665

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTL 177
            A + F  +        V TY+ ++  L + G +D+A   F  M     +  +V+ +  L
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDAL 725

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           IHGF +  +    ++L   M  +  +P A   + + D L ++
Sbjct: 726 IHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRS 767



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL++  CK    E A  ++ EM++ G + PD  +H  +   L +  +V+ A ++F +M++
Sbjct: 194 ILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEK 253

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D   Y   IDGL K G+  E++++   +    C      Y  L++ LCK+G LE 
Sbjct: 254 CGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLER 313

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +       + V Y+ +IHG    G+M +A  LF +M E    P+VIT   +I 
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +     +  +   +M      P+    + ++  L+K
Sbjct: 374 GLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412



 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 2/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  CK   +E A  L+  M + G +P+ VI+ +L  G  +  +++ A  LFDEM   
Sbjct: 300 ILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEA 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+T+ IDGLCK+G   ++ + F  +    C+ ++  Y+ +I GL K GR+  A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D VTY  ++ G    G++D+A  L  ++++ + +PN+  + +L++G
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNG 479

Query: 181 FIRINEPSKVI-ELLHKMKEKNVMPDASI-VSIVVDL 215
                   K + +L  + K      D  +  SI+V L
Sbjct: 480 LCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGL 516



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 3/197 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L  G C   +++ A++L+ EM+ +G  PD   +  +  GL ++ ++E A K FDEM   G
Sbjct: 619 LCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKG 678

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
                 TYT  +  LC  G + E+   F ++ + + EL   +  Y  LI G CK+ +++ 
Sbjct: 679 QKPTVATYTALVQALCHAGNVDEAFHRFESM-LARGELVGSVMIYDALIHGFCKALKVDA 737

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+LF  +     V   VT + +  GL   G+ +KA +L  +M      P+  TF  ++ 
Sbjct: 738 ALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILD 797

Query: 180 GFIRINEPSKVIELLHK 196
           G  + +E  K+++L+ +
Sbjct: 798 GLRKSDESGKLLKLVQE 814



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 107/215 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K    + AL +   ML+K   P  V +  L   L +   +ERA +LF  M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++  YT  I G  K+G + E+  LF  +       D+  ++ +IDGLCKSG  E A 
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + RG    +VVTY+ +I GL   G++  A  +   M  +   P+ +T+  L+ GF
Sbjct: 386 KSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGF 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            ++    +  +LL ++ + +  P+  + S +V+ L
Sbjct: 446 CKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGL 480



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 2/182 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI--HQVERAFKLFDEMQR 59
           +I G CK   ++ A  ++  M+S+G KPD   +N L  GL     ++VERAF L  ++++
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEK 571

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  TYT    GLCK G +  +V++           D+ AY+ L  GLC  G+++ 
Sbjct: 572 VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDR 631

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ LF  + R     D   Y  +I+GL    +++ A   F +M      P V T+  L+ 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 180 GF 181
             
Sbjct: 692 AL 693



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  + + +  + A+  +  M  K  KPD+     L   L +    E+AF++F EM   
Sbjct: 159 ILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAM 218

Query: 61  G-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G V  D   +T  +  L K   + E+ E+F  +       D  AY+ +IDGL K+G  + 
Sbjct: 219 GFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQE 278

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL++  ++     V   VTY I+++ L   G +++A +LF  M  +   PN + + +LIH
Sbjct: 279 ALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIH 338

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           GF +     +   L  +M E    PD    ++++D L K+
Sbjct: 339 GFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKS 378



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQRD 60
           L++G+CK   ++ A  L  E+      P++ ++++L  GL +   VE+    LF++ +  
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAA 500

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS--GRLE 118
               D       I GLCK G + E+  +F+ +    C+ D   Y+ LI+GLC+S   R+E
Sbjct: 501 AETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVE 560

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  L H L +   + D VTY+ +  GL   G++D+A  +  +        +V+ +  L 
Sbjct: 561 RAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALC 620

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G     +  + + L  +M  +   PDA+    +++ L K
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIK 660



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+NG C    +E  L+ L+ +  +     D  +  ++ +GL +  +++ A ++F  M  +
Sbjct: 476 LVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE 535

Query: 61  GVAADTRTYTIFIDGLCKN--GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   D  TY I I+GLC++    +  +  L   L  +    D   Y+ L  GLCK G ++
Sbjct: 536 GCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVD 595

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+++          ADVV Y+ +  GL   GQ+D+A  LF +M     AP+   +  +I
Sbjct: 596 RAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCII 655

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +G I++ +     +   +M  K   P  +  + +V  L
Sbjct: 656 NGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQAL 693



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G + DV  +N L   L       + + + +EM + G+A +T ++ I I    +     ++
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIH 144
           V  F  ++  +C+ D+  +  L+D LCK+G  E A E+FH  +  G +  D   ++ M+ 
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L    ++ +A ++F  ME+    P+ I + T+I G  +     + +++L  M  K  +P
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVP 293

Query: 205 DASIVSIVVDLLAK 218
                 I+V+ L K
Sbjct: 294 TEVTYGILVNSLCK 307


>gi|255660958|gb|ACU25648.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 348

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 107/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL + + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   ++E AL
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +    + +  ++    + PD
Sbjct: 315 YKDGDIRNALVIWARILRNGLEPD 338



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 34/245 (13%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------------ 54
           C++ +I+GA  +Y E++   + PD V++N +  G F + +++  F+L+            
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 55  ---------------DE-------MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
                          DE       M+  G   D+ TY I + G CKNGYI +S+ +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 LD  AYS +I+GLCK   L+ AL + + + +     +V  Y+ +I+GL    + 
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKF 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M     +P +IT+ TLI+G  +     +   L+ ++ +K + P     S++
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 213 VDLLA 217
           +  L 
Sbjct: 241 MKGLC 245



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 83/144 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CKN+    A NL  E+L KG+ P V+ ++ L  GL   H+VERA +L++++   G
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D + + I I GLC  G +  ++ L+  +   KC  ++ +++ L++G  K G +  AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 122 ELFHSLPRGVLVADVVTYSIMIHG 145
            ++  + R  L  D+++Y+I + G
Sbjct: 325 VIWARILRNGLEPDIISYNITLKG 348



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  ++ +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               ++  + ++L +++  K   PD  + +I++
Sbjct: 244 LCLDHKVERALQLWNQVTSKGFKPDVQMHNILI 276



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 4/112 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C + ++E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 239 MLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDG 110
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  + G
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLKG 348


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C+ + +  A  ++++M+ +  KPD+V HNT+  GL    +   A KLF+ M+  
Sbjct: 317 VLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAK 376

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D ++YTI +   CK   + E+V+ F  ++   C  D   Y+CLI G     R++  
Sbjct: 377 GPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTV 436

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +       D  TY+ +I  + N    D A  ++  M EN + P   T+  ++  
Sbjct: 437 YGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKS 496

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + +       +    +MK K   PD +  ++ +
Sbjct: 497 YFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFI 529



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 94/218 (43%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+  +CK  +++ A+  + EM   G +PD  I+  L  G     +++  + L  EM+ +
Sbjct: 387 ILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKAN 446

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D +TY   I  +       ++V +++ +     +     YS ++    ++   E+ 
Sbjct: 447 GCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMG 506

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +  +  +       D  +Y++ I GL + G+  +A     +M E  +    + +      
Sbjct: 507 VAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAAD 566

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R   P  + EL  KMK       +++++   +++ K
Sbjct: 567 FSRAGRPDILEELAQKMKFSGKFEASNVIARWAEMMRK 604



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 1/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +    +   KE + A+ +   M     K  V   N L   L      + A  +F+++   
Sbjct: 248 VCFKAFAAAKERKKAVGVLELMKKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKLH-G 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + +TYT+ ++G C+   ++E+ +++  +     + DI A++ +++GL +  +   A
Sbjct: 307 RFTPNLQTYTVLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDA 366

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF  +       DV +Y+I++       +M +A   F +M+     P+   +  LI G
Sbjct: 367 IKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITG 426

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           F        V  LL +MK     PD    + ++ L+    +
Sbjct: 427 FGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRM 467



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 2/194 (1%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G   D   +NT+   L +  Q E    L +EM    +     T+T+            ++
Sbjct: 204 GFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLT-METFTVCFKAFAAAKERKKA 262

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           V +   ++  K ++ ++  +CL+D L ++   + AL +F  L  G    ++ TY+++++G
Sbjct: 263 VGVLELMKKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKL-HGRFTPNLQTYTVLLNG 321

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                 + +A  ++  M +    P+++   T++ G +R  + S  I+L   MK K   PD
Sbjct: 322 WCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPD 381

Query: 206 ASIVSIVVDLLAKN 219
               +I+V    K 
Sbjct: 382 VKSYTILVRDFCKQ 395



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 85/201 (42%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G  + K+   A+ L+  M +KG  PDV  +  L     +  +++ A + F+EMQ  G
Sbjct: 353 MLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAG 412

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  I G      +     L + ++   C  D + Y+ LI  +      + A+
Sbjct: 413 CRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAV 472

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            ++  +    +     TYS+M+   +     +     + +M+     P+  ++   I G 
Sbjct: 473 RIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGL 532

Query: 182 IRINEPSKVIELLHKMKEKNV 202
           I +   ++  + L +M EK +
Sbjct: 533 ISLGRCAEAGKYLEEMIEKGM 553


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 15/243 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L+NG C     + AL L   M      G  PDVV + T+  G F+    ++A+  + EM 
Sbjct: 164 LLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 59  RDGVAADTRTYTIFIDGLCKN------------GYIVESVELFRTLRILKCELDIQAYSC 106
             G+  D  TY+  I  LCK             G ++ES +LF  +  +  + DI  YS 
Sbjct: 224 DRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 283

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LIDG C +G+++ A++L   +    L  + VTYS +I+G     +M+ A  LF +ME + 
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           V+P++IT+  ++ G  +    +   EL  ++ E     + S  +I++  L KN+++ ++L
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 403

Query: 227 PSF 229
             F
Sbjct: 404 QMF 406



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 94/165 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 319 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 378

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    +++++F+ L ++  +L+ + ++ +ID L K GR + A 
Sbjct: 379 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 438

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +LF +     LV +  TY +M   +   G +++   LFL ME+N 
Sbjct: 439 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 483



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 124/231 (53%), Gaps = 1/231 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A+ L S M+S G+KP+ V ++TL  G  +I ++E A  LF EM+  G
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     ++++  Y+ ++ GLCK+   + AL
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 403

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F +L    L  +  T++IMI  L   G+ D+A DLF+    N + PN  T+  +    
Sbjct: 404 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 463

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEISLNSLPSFTV 231
           I      ++ +L   M++     D+ +++ +V +LL +  + + S  S T 
Sbjct: 464 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGVVVVVSGESATT 514



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 12/229 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF---------- 51
           +ING+ K  + + A + Y EML +GI PDVV ++++   L +   +++ +          
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIE 261

Query: 52  --KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
             KLFD M R GV  D  TY+  IDG C  G + E+++L   +  +  + +   YS LI+
Sbjct: 262 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 321

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G CK  R+E AL LF  +    +  D++TY+I++ GL+   +   A +L++ + E+    
Sbjct: 322 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 381

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + T+  ++HG  +       +++   +   ++  +A   +I++D L K
Sbjct: 382 ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLK 430



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 19/220 (8%)

Query: 14  GALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
            A++ Y+ M   G   + PD+  +  L        +++  F     + + G   +  T+T
Sbjct: 67  AAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFT 126

Query: 71  IFIDGLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP- 128
             + GLC +    +++++  R +  L C  ++ +Y+ L++GLC   R + ALEL H +  
Sbjct: 127 PLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMAD 186

Query: 129 --RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR--- 183
              G    DVV+Y+ +I+G + +G  DKA+  + +M +  + P+V+T+ ++I    +   
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQA 246

Query: 184 INEP------SKVIE---LLHKMKEKNVMPDASIVSIVVD 214
           +++P       +VIE   L   M    V PD    S ++D
Sbjct: 247 MDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 286



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYS 105
           E A  +FDE+ R G  A        +  + ++          R  R    E+  D+  Y 
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     + +T++ ++ GL  D +   A D+ L  M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
               PNV ++  L++G    N   + +ELLH M +
Sbjct: 152 LGCIPNVFSYNNLLNGLCDENRSQEALELLHMMAD 186



 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 48/100 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKNK  + AL ++  +    +K +    N +   L ++ + + A  LF     +
Sbjct: 388 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 447

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G+  +  TY +  + +   G + E  +LF ++    C +D
Sbjct: 448 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 487


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 38/239 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   ++ A  + +E   +   PDVV +NTL   LF++ +V+ A   F +M  +G
Sbjct: 88  LVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG 147

Query: 62  VA-------------------ADTR----------------TYTIFIDGLCKNGYIVESV 86
                                AD                  TY++ IDGLCK+  + E+ 
Sbjct: 148 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQ 207

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           +L   +    C  D+ AY+ L+ G   +GRL+ AL L   +     + DVVTY+++I  L
Sbjct: 208 QLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 267

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
              G++D AH++F ++  N  +PNV+T+  LI G+ R    S+V E    M+E    P+
Sbjct: 268 CKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCR---ASRVDEGGKVMREMACRPN 323



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 3/205 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G C+ + +  AL +++EM+ +   P++V ++ +  GL +  Q++ A +L D M  +G
Sbjct: 158 IITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG 217

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D   YT  + G    G +  ++ L R +    C  D+  Y+ +ID LCK GR++ A 
Sbjct: 218 CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH 277

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  L       +VVTYS +I G     ++D+   +   M E A  PNV+T+ T+I G 
Sbjct: 278 EIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGL 334

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
             ++   +   +  +M E   +PDA
Sbjct: 335 SMVDRNEEAYGMFREMSECGFVPDA 359



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+ +++ A  L   M+S+G +PD+V +  L +G     +++ A  L   M   
Sbjct: 192 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 251

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TYT+ ID LCK G + ++ E+FR L   KC  ++  YS LI G C++ R++  
Sbjct: 252 GCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEG 311

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +       +VVTY+ MI GL    + ++A+ +F +M E    P+  T+  L   
Sbjct: 312 GKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRA 368

Query: 181 FIRINEPSKVI 191
              I+ P  V+
Sbjct: 369 LRMIDHPPHVL 379



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LING CK   ++ A +L+ +M++ G  +P+   +N L  GL +  +++ A  +  E ++ 
Sbjct: 52  LINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKR 111

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             A D  TY   +  L + G + E++  F  +        + +++ +I GLC++ RL  A
Sbjct: 112 DFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADA 171

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+F+ +       ++VTYS++I GL    Q+D+A  L   M      P+++ +  L+ G
Sbjct: 172 LEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLG 231

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F         + LL +M  +  +PD    ++V+D L K
Sbjct: 232 FSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 269



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 2/183 (1%)

Query: 40  GLFEIHQVERAFKLFD-EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-C 97
           GL    +V +A + FD  ++      D  +YT  I+GLCK G +  + +LFR +     C
Sbjct: 19  GLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGC 78

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
             +   Y+ L+DGLCK  RL+ A  +     +     DVVTY+ ++  L+  G++D+A  
Sbjct: 79  RPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 138

Query: 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            F  M E    P +++F  +I G  R    +  +E+ ++M +++  P+    S+V+D L 
Sbjct: 139 TFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC 198

Query: 218 KNE 220
           K++
Sbjct: 199 KSD 201



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 82/150 (54%), Gaps = 2/150 (1%)

Query: 57  MQRDGVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSG 115
           M  +G+  + RT +I + GLC+ G + +++E F  +L +   + D+ +Y+ LI+GLCK G
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 116 RLEIALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           R++ A +LF  +   G    +  TY+ ++ GL    ++D A  +  +  +   AP+V+T+
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTY 120

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            TL+    ++    + +    +M E+  +P
Sbjct: 121 NTLMAALFQLGRVDEALATFTQMTEEGYVP 150


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 117/257 (45%), Gaps = 36/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ +  E+  AL ++  M   G  P V   N L +GL E  Q+E+A ++ DEM   G
Sbjct: 559 IIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAG 618

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TYT  ++G    G   ++ E F  LR    ELD+  Y  L+   CKSGR++ AL
Sbjct: 619 VSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSAL 678

Query: 122 EL-----FHSLPRGVLV------------------------------ADVVTYSIMIHGL 146
            +       ++PR   V                               D+ TY+  I+  
Sbjct: 679 AVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINAC 738

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M +A     +ME   V PNV T+ TLIHG+   + P K +    +MK   + PD 
Sbjct: 739 CKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDK 798

Query: 207 SIV-SIVVDLLAKNEIS 222
           ++   ++  LL++  ++
Sbjct: 799 AVYHCLMTSLLSRATVA 815



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 108/218 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+ K K+   A  ++ +++  G+KPDVV++N +      +  ++RA  +  EMQ+ 
Sbjct: 488 MLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKK 547

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
                +RT+   I G  + G +  ++E+F  +R   C   +  ++ L+ GL +  ++E A
Sbjct: 548 RHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKA 607

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+   +    +  D  TY+ +++G    G   KA + F  +    +  +V T+  L+  
Sbjct: 608 VEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 667

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +       + +  +M  +N+  +  + +I++D  A+
Sbjct: 668 CCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWAR 705



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 102/201 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN Y K  ++  AL +   M S GIK ++  ++ L  G  ++     AF +F+++ +DG
Sbjct: 454 LINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDG 513

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   I   C  G +  ++ + + ++  +     + +  +I G  ++G +  AL
Sbjct: 514 LKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRAL 573

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  + R   +  V T++ ++ GL    QM+KA ++  +M    V+P+  T+ T+++G+
Sbjct: 574 EIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGY 633

Query: 182 IRINEPSKVIELLHKMKEKNV 202
             + +  K  E   K++ + +
Sbjct: 634 AALGDTGKAFEYFTKLRNEGL 654



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 7/228 (3%)

Query: 1   ILINGYCK------NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF 54
           I++ G+ K      +  ++ A +L  EM  +GI   + I++T+  G   I   E+   +F
Sbjct: 377 IVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVF 436

Query: 55  DEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
             ++  G A    +Y   I+   K G + +++E+ + +     + +++ YS LI+G  K 
Sbjct: 437 KRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKL 496

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
                A  +F  + +  L  DVV Y+ +I      G MD+A  +  +M++    P   TF
Sbjct: 497 KDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTF 556

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
             +IHGF R  E  + +E+   M+    +P   +  ++V+ L+ K ++
Sbjct: 557 MPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQM 604



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   CK+  ++ AL +  EM ++ I  +  ++N L  G      V  A  L  +M+++G
Sbjct: 664 LLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 723

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TYT FI+  CK G ++ + +  + +  L  + +++ Y+ LI G   +   E AL
Sbjct: 724 VQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKAL 783

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
             F  +    L  D   Y  ++  L +   + +A+
Sbjct: 784 RCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAY 818



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 92/211 (43%), Gaps = 6/211 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  Y +  ++  A   +  M  +GI P   ++ +L         +E A     +M+ +
Sbjct: 307 LMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEE 366

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK------CELDIQAYSCLIDGLCKS 114
           GV     TY+I + G  K G   +S  + R   +++       +  I  Y  +++G    
Sbjct: 367 GVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMI 426

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G  E  L +F  L        V++Y  +I+     G++ KA ++   ME   +  N+ T+
Sbjct: 427 GNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTY 486

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             LI+GF+++ + +    +   + +  + PD
Sbjct: 487 SMLINGFLKLKDWTNAFTVFEDVIKDGLKPD 517



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 54/111 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+ +  ++  A +L  +M  +G++PD+  + +      +   + RA K   EM+  
Sbjct: 698 ILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEAL 757

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           GV  + +TYT  I G        +++  F  +++   + D   Y CL+  L
Sbjct: 758 GVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSL 808


>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 376

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL + + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   ++E AL
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G+M  A  L+ DM     APN+++  TL+ GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I +  L + N IS
Sbjct: 315 YKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRIS 356



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGY +  +I+    L+  M S+G +  V   N +  GLF+  +V+    +++ M+  G
Sbjct: 31  MLNGYFRVAKIKDCFELWEMMGSEGNRS-VSSFNIMMRGLFDNGKVDEVISIWELMKESG 89

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D+ TY I + G CKNGY  +S+ +          LD  AYS +I+GLCK   L+ AL
Sbjct: 90  FVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRAL 149

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + + +     +V  Y+ +I+GL    + + A  +F +M     +P +IT+ TLI+G 
Sbjct: 150 YVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGL 209

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            +     +   L+ ++ +K + P     S+++  L 
Sbjct: 210 CKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLC 245



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 109/215 (50%), Gaps = 1/215 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C++ +I+GA  +Y E++   + PD V+ N +  G F + +++  F+L++ M  +G  +  
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVCNAMLNGYFRVAKIKDCFELWEMMGSEGNRS-V 59

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            ++ I + GL  NG + E + ++  ++      D   Y  L+ G CK+G  + +L +   
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEM 119

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
             +   V D   YS MI+GL  +  +D+A  +   M ++   PNV  + TLI+G +  ++
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
               I +  +M   +  P     + +++ L KNE+
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +    +++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  ++ +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               ++  + ++L +++  K   PD  + +I++
Sbjct: 244 LCLDHKVERALQLWNQVTSKGFKPDVQMHNILI 276



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C + ++E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 239 MLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  + GLC   R+ 
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLKGLCSCNRIS 356

Query: 119 IALELFH 125
            A+   H
Sbjct: 357 DAILFLH 363



 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           C+SG ++ A  ++  +    +  D V  + M++G +   ++    +L+ +M  +    +V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVCNAMLNGYFRVAKIKDCFELW-EMMGSEGNRSV 59

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231
            +F  ++ G     +  +VI +   MKE   + D+    I+V    KN  S  SL    +
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEM 119

Query: 232 HERQEEV 238
            E++  V
Sbjct: 120 AEQKGGV 126


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 122/225 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +    ++P VV  NTL  G  ++  ++  F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV +D  TY++ I+GLCK   + ++ ELF  +       +   ++ LIDG CK+ R+++A
Sbjct: 201 GVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+ IT+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN+ ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML  G+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F    +    ++LL +M+    MP
Sbjct: 391 FCEKGDVWTGLKLLKEMQRDGYMP 414



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  +++    L + M + G++ DV  ++ L  GL +  +++ A +LFDEM  +G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKN  +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D +TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +        ++L +M    + P+    +++++
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIIN 389



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 82/165 (49%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L+    L +++    + +DV TYS++I+GL    +MD A++LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +N + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPD 275


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+C    I+ AL L+  ML KGI P+ +  +TL  G F+  + E+A  L+ E    G
Sbjct: 460 LLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARG 519

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +T T+   I+GLCK   + E+ EL   ++  +C  DI  Y  L  G CK G ++ A 
Sbjct: 520 LAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRAS 579

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + + L        +  ++ +I G +   Q  K +D+  +M    ++PN + +G LI G+
Sbjct: 580 RILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGW 639

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +      L  +M EK ++P+  I S +V    +
Sbjct: 640 CKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYR 676



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 95/183 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G CK   IE A NL +++  KG   D   +++L  G      V+ AF L D M   
Sbjct: 730 IVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSV 789

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I GLCK+G +  +V LF+ L       +   Y+ LID  CK G +  A
Sbjct: 790 GLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEA 849

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +   V TYSI+I+GL   G M++A  L   M EN V PN +T+ TLI G
Sbjct: 850 FKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQG 909

Query: 181 FIR 183
           ++R
Sbjct: 910 YVR 912



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +L+ GYC  K +E A  +  E+  +K +  D  +   +  G  ++ ++E A +L +EM  
Sbjct: 318 LLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVD 377

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
             +  +   Y I I+G CK G +VE+  +   +  +    D  +Y+ L+DG CK G +  
Sbjct: 378 SRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNK 437

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A E ++++ R    A  +TY+ ++ G  + G +D A  L+  M +  +APN I+  TL+ 
Sbjct: 438 AFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLD 497

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           GF +  +  K + L  +   + +  + +  + V++ L K E
Sbjct: 498 GFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIE 538



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+INGYCK   +  A N+  EM   G++PD   +N+L  G  +   + +AF+ ++ M R+
Sbjct: 389 IMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRN 448

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-----------------------------RT 91
           G AA T TY   + G C  G I +++ L+                             + 
Sbjct: 449 GFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKA 508

Query: 92  LRILKCEL------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           L + K  L      +   ++ +I+GLCK  R+  A EL   + +     D++TY  +  G
Sbjct: 509 LNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSG 568

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G MD+A  +  ++E    AP +  F +LI G     +  KV ++L +M  + + P+
Sbjct: 569 YCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPN 628



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 23/220 (10%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+CK  ++  A NLY EM+ KG+ P++ I ++L    +   + + A  +   +    
Sbjct: 635 LIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTD 694

Query: 62  VAADTRTYTI-------FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           +  D     +       FID +    +         + +I+        ++ +I GLCK 
Sbjct: 695 MIPDISAPRLEIGKVANFIDTVAGGNH--------HSAKIM--------WNIVIFGLCKL 738

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR+E A  L   L     VAD  TYS +IHG    G +D A DL   M    + PN++T+
Sbjct: 739 GRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTY 798

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +LI+G  +  E S+ + L  K+  K + P+A   + ++D
Sbjct: 799 NSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLID 838



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%)

Query: 32  VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           ++ N +  GL ++ ++E A  L  +++  G  AD  TY+  I G   +G++  + +L  T
Sbjct: 726 IMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDT 785

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           +  +    +I  Y+ LI GLCKSG L  A+ LF  L    +  + +TY+ +I     DG 
Sbjct: 786 MLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGY 845

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           + +A  L   M E  + P V T+  LI+G        + I+LL +M E NV P+
Sbjct: 846 ITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPN 899



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+       +++GAL ++ EM + G +  +   N++   L +   +     +F++MQR 
Sbjct: 178 LLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRA 237

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T  I     CK   +V ++E    +  +  E+++ AY  +++G C+ G+   A
Sbjct: 238 GALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDA 297

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
             +  SLP      ++VTY++++ G  N+  M++A  +  ++ +N  +  +   FG +I+
Sbjct: 298 RRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVIN 357

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G+ ++        LL++M +  +  +  + +I+++   K
Sbjct: 358 GYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCK 396



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK+ E+  A++L+ ++ +KGI P+ + +NTL     +   +  AFKL   M  +G
Sbjct: 801 LIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEG 860

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY+I I+GLC  GY+ E+++L   +     + +   Y  LI G  +   +++ +
Sbjct: 861 IHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCESVDVPI 920


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 111/205 (54%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           + ++ A  ++ EM+  G+ P+V  +N L  G      +E     F EM+R+G   +  TY
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTY 241

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
              ID  CK   I E+ +L R + +     ++ +Y+ +I+GLC+ G+++   E+   + +
Sbjct: 242 NTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSK 301

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
              V D VT++ +I+G  N G   +A  L  +M +N ++PNV+T+ TLI+   +    ++
Sbjct: 302 RRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNR 361

Query: 190 VIELLHKMKEKNVMPDASIVSIVVD 214
            +E L +M+++ + P+    + ++D
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLID 386



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ING C+  +++    +  EM  +   PD V  NTL  G   +    +A  L  EM ++
Sbjct: 278 VVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ +  TYT  I+ +CK G +  ++E    +R      + + Y+ LIDG  + G L+ A
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   +        ++TY+ +I+G    G+M+ A  L  +M E    P+V+++ T+I G
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  E  K  +L  +M  K + PD +  S ++  L K
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 94/177 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+C    +E A  L  EM+ +G  PDVV ++T+  G     ++E+AF+L  EM   G
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY+  I GLCK   + E  +LF+ +  L    D   Y+ LI+  C  G L+ AL
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            L   + +     D+VTY+++I+G     +  +A  L L +      PN IT+ TLI
Sbjct: 539 RLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLI 595



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G+C    +E  L  + EM   G  P+VV +NT+     ++ ++  AFKL   M   
Sbjct: 208 ILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  +Y + I+GLC+ G + E+ E+   +   +   D   ++ LI+G C  G    A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L L   + +  L  +VVTY+ +I+ +   G +++A +    M +  + PN  T+ TLI G
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +     +  +++ +M E    P
Sbjct: 388 FSQQGFLKQAYQIMKEMVENGFTP 411



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 107/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ +   ++ A  +  EM+  G  P ++ +N L  G   + ++E A  L  EM   G
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  +Y+  I G C+N  + ++ +L   +       D+  YS LI GLCK  RL    
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +    L  D VTY+ +I+    +G +DKA  L  +M +   +P+++T+  LI+GF
Sbjct: 504 DLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            + +   +   LL K+  +  +P+    + ++D
Sbjct: 564 NKQSRTKEAKRLLLKLLYEESVPNEITYNTLID 596



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 104/208 (50%), Gaps = 1/208 (0%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQRDGVAADTRTYT 70
           I  AL++ +   S G  P V+ +N +   +    Q V+ A  +F EM   GV+ +  TY 
Sbjct: 148 INKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           I I G C  G +   +  F  +    C  ++  Y+ +ID  CK  ++  A +L   +   
Sbjct: 208 ILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            L  ++++Y+++I+GL  +GQM +  ++  +M +    P+ +TF TLI+G+  +    + 
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + L  +M +  + P+    + +++ + K
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCK 355



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 50/267 (18%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+C+N+E+E A  L  EM++KGI PDV  +++L  GL +  ++     LF EM   G
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I+  C  G + +++ L   +       DI  Y+ LI+G  K  R + A 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 122 ELF------HSLP-----------------------------RGVL-VADVV-------- 137
            L        S+P                             +G++  AD V        
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 138 ------TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
                  Y+++IHG    G ++KA++L+ +M  +  AP+ +T   L        +  ++ 
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELN 693

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LL    +   + +A++  +++ + +K
Sbjct: 694 QLLDYTLKSCRITEAALAKVLIGINSK 720


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G+C++ EIE A  L  EM  KG+ P+ V + T+  G  +   +  AF+LFDEM+  
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+  YT  +DG C+   +  ++ +F T +   C      ++ LI+ + K G+ E+ 
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELK 785

Query: 121 LELFHSLPRGVL----VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            E+ + L  G        + VTY+IMI  L  +G ++ A +LF  M+   + P VIT+ +
Sbjct: 786 TEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           L++G+ ++   +++  +  +     + PD  + S++++   K  ++  +L
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K K ++ A +   EM+  G+KP+   +     G  E  +   A K   EM+  G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +    T  I+  CK G ++E+   +R++       D + Y+ L++GL K+ +++ A 
Sbjct: 553 VLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  DV +Y ++I+G    G M KA  +F +M E  + PNVI +  L+ GF
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  E  K  ELL +M  K + P+A     ++D   K+
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GY +  E   A     EM   G+ P+ V+   L     +  +V  A   +  M   G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +TYT+ ++GL KN  + ++ E+FR +R      D+ +Y  LI+G  K G ++ A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    L  +V+ Y++++ G    G+++KA +L  +M    + PN +T+ T+I G+
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  + ++   L  +MK K ++PD+ + + +VD
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  KN +++ A  ++ EM  KGI PDV  +  L  G  ++  +++A  +FDEM  +
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y + + G C++G I ++ EL   + +     +   Y  +IDG CKSG L  A
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    LV D   Y+ ++ G      +++A  +F    +   A +   F  LI+ 
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNALINW 775

Query: 181 FIRINEPSKVIELLHKMKEKNV----MPDASIVSIVVDLLAK 218
             +  +     E+L+++ + +      P+    +I++D L K
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 134/314 (42%), Gaps = 81/314 (25%)

Query: 2   LINGYCKNK-----------------------------------EIEGALNLYSEMLSKG 26
           LI GYC+ K                                   +++GA N+  EM++ G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-------- 78
            +P+VVI+ TL     +  +   A ++  EM+  G+A D   Y   I GL K        
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 79  ----------------------NGYIVESVELFRTLRILK----CELDIQAYSC--LIDG 110
                                 +GYI E+ E     + +K    C +      C  LI+ 
Sbjct: 508 SFLVEMVENGLKPNAFTYGAFISGYI-EASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK G++  A   + S+    ++ D  TY+++++GL+ + ++D A ++F +M    +AP+
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           V ++G LI+GF ++    K   +  +M E+ + P+  I ++++    +         S  
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR---------SGE 677

Query: 231 VHERQEEVDESNVK 244
           + + +E +DE +VK
Sbjct: 678 IEKAKELLDEMSVK 691



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK K +E A +L  EM S G+  D   ++ L  GL +    + A  L  EM   
Sbjct: 282 VLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSH 341

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   I  + K G + ++  LF  +         QAY+ LI+G C+   +   
Sbjct: 342 GINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQG 401

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  +V    TY  ++ G+ + G +D A+++  +M  +   PNV+ + TLI  
Sbjct: 402 YELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKT 461

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F++ +     + +L +MKE+ + PD
Sbjct: 462 FLQNSRFGDAMRVLKEMKEQGIAPD 486



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 100/207 (48%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A  L+  M++ G+ P    + +L  G      V + ++L  EM++  +     TY  
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            + G+C +G +  +  + + +    C  ++  Y+ LI    ++ R   A+ +   +    
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  D+  Y+ +I GL    +MD+A    ++M EN + PN  T+G  I G+I  +E +   
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + +M+E  V+P+  + + +++   K
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCK 569



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            V+ A KL + M   G+     TY + IDGLCK   + ++  L   +  L   LD   YS
Sbjct: 257 NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYS 316

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDGL K    + A  L H +    +      Y   I  +  +G M+KA  LF  M  +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIAS 376

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            + P    + +LI G+ R     +  ELL +MK++N++
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK   +E A  L+ +M +  + P V+ + +L  G  ++ +    F +FDE    
Sbjct: 810 IMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAA 869

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-----CELDIQAYSCLIDGLCKSG 115
           G+  D   Y++ I+   K G   +++ L   +         C+L I     L+ G  K G
Sbjct: 870 GIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 929

Query: 116 RLEIALELFHSLPRGVLVADVVT 138
            +E+A ++  ++ R   + D  T
Sbjct: 930 EMEVAEKVMENMVRLQYIPDSAT 952



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 21/179 (11%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D   + I  DG    GYI E+V +F +   L+    +     L+D L +  RL++ 
Sbjct: 146 GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE---------------- 164
            +++  +    +V DV TY ++I      G +    D+    E+                
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 165 -----NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + P   T+  LI G  +I        LL +M    V  D    S+++D L K
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK 324


>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 182

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 100/172 (58%)

Query: 50  AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
           A +LF  +   G +  T  Y   +DG C  G++  ++ LF  ++    +LD  AY+ ++D
Sbjct: 9   AHELFKNLCASGHSPTTVIYITLLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVD 68

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G+CK+G+L  A ELF +LP   L  DV TY+I+I    N+G +++A+ +F +MEE    P
Sbjct: 69  GMCKAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSLP 128

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +  ++  +I GF+R N+ S   +L+H+M +K    D +  S+V D ++  ++
Sbjct: 129 DGCSYNVIIQGFLRHNDLSGATQLIHEMIDKGFSADVTTPSLVADSVSNGDL 180



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C    ++ AL L+ EM    +K D V +N +  G+ +  ++  A +LF  +  +G
Sbjct: 31  LLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVDGMCKAGKLNDAKELFSTLPIEG 90

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D RTY I I   C  G + E+ ++FR +       D  +Y+ +I G  +   L  A 
Sbjct: 91  LQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSYNVIIQGFLRHNDLSGAT 150

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +L H +      ADV T S++   + N
Sbjct: 151 QLIHEMIDKGFSADVTTPSLVADSVSN 177



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CK  ++  A  L+S +  +G++PDV  +N L         +E A+++F EM+  
Sbjct: 65  IIVDGMCKAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEG 124

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
           G   D  +Y + I G  ++  +  + +L   +
Sbjct: 125 GSLPDGCSYNVIIQGFLRHNDLSGATQLIHEM 156



 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  +C    +E A  ++ EM   G  PD   +N +  G    + +  A +L  EM   
Sbjct: 100 ILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSYNVIIQGFLRHNDLSGATQLIHEMIDK 159

Query: 61  GVAADTRTYTIFIDGLCKNGYIV 83
           G +AD  T ++  D +  NG +V
Sbjct: 160 GFSADVTTPSLVADSV-SNGDLV 181


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G+C++ EIE A  L  EM  KG+ P+ V + T+  G  +   +  AF+LFDEM+  
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+  YT  +DG C+   +  ++ +F T +   C      ++ LI+ + K G+ E+ 
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELK 785

Query: 121 LELFHSLPRGVL----VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            E+ + L  G        + VTY+IMI  L  +G ++ A +LF  M+   + P VIT+ +
Sbjct: 786 TEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           L++G+ ++   +++  +  +     + PD  + S++++   K  ++  +L
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 108/218 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K K ++ A +   EM+  G+KP+   +     G  E  +   A K   EM+  G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +    T  I+  CK   ++E+   +R++       D + Y+ L++GL K+ +++ A 
Sbjct: 553 VLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  DV +Y ++I+G    G M KA  +F +M E  + PNVI +  L+ GF
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  E  K  ELL +M  K + P+A     ++D   K+
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GY +  E   A     EM   G+ P+ V+   L     +  +V  A   +  M   G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQG 587

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +TYT+ ++GL KN  + ++ E+FR +R      D+ +Y  LI+G  K G ++ A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    L  +V+ Y++++ G    G+++KA +L  +M    + PN +T+ T+I G+
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  + ++   L  +MK K ++PD+ + + +VD
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  KN +++ A  ++ EM  KGI PDV  +  L  G  ++  +++A  +FDEM  +
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y + + G C++G I ++ EL   + +     +   Y  +IDG CKSG L  A
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    LV D   Y+ ++ G      +++A  +F    +   A +   F  LI+ 
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNALINW 775

Query: 181 FIRINEPSKVIELLHKMKEKNV----MPDASIVSIVVDLLAK 218
             +  +     E+L+++ + +      P+    +I++D L K
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 105/218 (48%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A  L+  M++ G+ P    + +L  G      V + ++L  EM++  +     TY  
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            + G+C +G +  +  + + +    C  ++  Y+ LI    ++ R   A+ +   +    
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  D+  Y+ +I GL    +MD+A    ++M EN + PN  T+G  I G+I  +E +   
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           + + +M+E  V+P+  + + +++   K E  + +  ++
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAY 580



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK K +E A +L  EM S G+  D   ++ L  GL +    + A  L  EM   
Sbjct: 282 VLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSH 341

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   I  + K G + ++  LF  +         QAY+ LI+G C+   +   
Sbjct: 342 GINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQG 401

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  +V    TY  ++ G+ + G +D A+++  +M  +   PNV+ + TLI  
Sbjct: 402 YELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKT 461

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F++ +     + +L +MKE+ + PD
Sbjct: 462 FLQNSRFGDAMRVLKEMKEQGIAPD 486



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 133/314 (42%), Gaps = 81/314 (25%)

Query: 2   LINGYCKNK-----------------------------------EIEGALNLYSEMLSKG 26
           LI GYC+ K                                   +++GA N+  EM++ G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-------- 78
            +P+VVI+ TL     +  +   A ++  EM+  G+A D   Y   I GL K        
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 79  ----------------------NGYIVESVELFRTLRILK----CELDIQAYSC--LIDG 110
                                 +GYI E+ E     + +K    C +      C  LI+ 
Sbjct: 508 SFLVEMVENGLKPNAFTYGAFISGYI-EASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK  ++  A   + S+    ++ D  TY+++++GL+ + ++D A ++F +M    +AP+
Sbjct: 567 YCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           V ++G LI+GF ++    K   +  +M E+ + P+  I ++++    +         S  
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR---------SGE 677

Query: 231 VHERQEEVDESNVK 244
           + + +E +DE +VK
Sbjct: 678 IEKAKELLDEMSVK 691



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            V+ A KL + M   G+     TY + IDGLCK   + ++  L   +  L   LD   YS
Sbjct: 257 NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYS 316

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDGL K    + A  L H +    +      Y   I  +  +G M+KA  LF  M  +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIAS 376

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            + P    + +LI G+ R     +  ELL +MK++N++
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK   +E A  L+ +M +  + P V+ + +L  G  ++ +    F +FDE    
Sbjct: 810 IMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAA 869

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-----CELDIQAYSCLIDGLCKSG 115
           G+  D   Y++ I+   K G   +++ L   +         C+L I     L+ G  K G
Sbjct: 870 GIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 929

Query: 116 RLEIALELFHSLPRGVLVADVVT 138
            +E+A ++  ++ R   + D  T
Sbjct: 930 EMEVAEKVMENMVRLQYIPDSAT 952



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 21/179 (11%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D   + I  DG    GYI E+V +F +   L+    +     L+D L +  RL++ 
Sbjct: 146 GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE---------------- 164
            +++  +    +V DV TY ++I      G +    D+    E+                
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 165 -----NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + P   T+  LI G  +I        LL +M    V  D    S+++D L K
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK 324


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G+C++ EIE A  L  EM  KG+ P+ V + T+  G  +   +  AF+LFDEM+  
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D+  YT  +DG C+   +  ++ +F T +   C      ++ LI+ + K G+ E+ 
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELK 785

Query: 121 LELFHSLPRGVL----VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
            E+ + L  G        + VTY+IMI  L  +G ++ A +LF  M+   + P VIT+ +
Sbjct: 786 TEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845

Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           L++G+ ++   +++  +  +     + PD  + S++++   K  ++  +L
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  K K ++ A +   EM+  G+KP+   +     G  E  +   A K   EM+  G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +    T  I+  CK G ++E+   +R++       D + Y+ L++GL K+ +++ A 
Sbjct: 553 VLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +    +  DV +Y ++I+G    G M KA  +F +M E  + PNVI +  L+ GF
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            R  E  K  ELL +M  K + P+A     ++D   K+
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 111/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GY +  E   A     EM   G+ P+ V+   L     +  +V  A   +  M   G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +TYT+ ++GL KN  + ++ E+FR +R      D+ +Y  LI+G  K G ++ A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +    L  +V+ Y++++ G    G+++KA +L  +M    + PN +T+ T+I G+
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  + ++   L  +MK K ++PD+ + + +VD
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  KN +++ A  ++ EM  KGI PDV  +  L  G  ++  +++A  +FDEM  +
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y + + G C++G I ++ EL   + +     +   Y  +IDG CKSG L  A
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    LV D   Y+ ++ G      +++A  +F    +   A +   F  LI+ 
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNALINW 775

Query: 181 FIRINEPSKVIELLHKMKEKNV----MPDASIVSIVVDLLAK 218
             +  +     E+L+++ + +      P+    +I++D L K
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 134/314 (42%), Gaps = 81/314 (25%)

Query: 2   LINGYCKNK-----------------------------------EIEGALNLYSEMLSKG 26
           LI GYC+ K                                   +++GA N+  EM++ G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-------- 78
            +P+VVI+ TL     +  +   A ++  EM+  G+A D   Y   I GL K        
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 79  ----------------------NGYIVESVELFRTLRILK----CELDIQAYSC--LIDG 110
                                 +GYI E+ E     + +K    C +      C  LI+ 
Sbjct: 508 SFLVEMVENGLKPNAFTYGAFISGYI-EASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
            CK G++  A   + S+    ++ D  TY+++++GL+ + ++D A ++F +M    +AP+
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
           V ++G LI+GF ++    K   +  +M E+ + P+  I ++++    +         S  
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR---------SGE 677

Query: 231 VHERQEEVDESNVK 244
           + + +E +DE +VK
Sbjct: 678 IEKAKELLDEMSVK 691



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK K +E A +L  EM S G+  D   ++ L  GL +    + A  L  EM   
Sbjct: 282 VLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSH 341

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y   I  + K G + ++  LF  +         QAY+ LI+G C+   +   
Sbjct: 342 GINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQG 401

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  +V    TY  ++ G+ + G +D A+++  +M  +   PNV+ + TLI  
Sbjct: 402 YELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKT 461

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           F++ +     + +L +MKE+ + PD
Sbjct: 462 FLQNSRFGDAMRVLKEMKEQGIAPD 486



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 100/207 (48%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E A  L+  M++ G+ P    + +L  G      V + ++L  EM++  +     TY  
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            + G+C +G +  +  + + +    C  ++  Y+ LI    ++ R   A+ +   +    
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           +  D+  Y+ +I GL    +MD+A    ++M EN + PN  T+G  I G+I  +E +   
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + + +M+E  V+P+  + + +++   K
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCK 569



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%)

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
            V+ A KL + M   G+     TY + IDGLCK   + ++  L   +  L   LD   YS
Sbjct: 257 NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYS 316

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDGL K    + A  L H +    +      Y   I  +  +G M+KA  LF  M  +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIAS 376

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
            + P    + +LI G+ R     +  ELL +MK++N++
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+  CK   +E A  L+ +M +  + P V+ + +L  G  ++ +    F +FDE    
Sbjct: 810 IMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAA 869

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-----CELDIQAYSCLIDGLCKSG 115
           G+  D   Y++ I+   K G   +++ L   +         C+L I     L+ G  K G
Sbjct: 870 GIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 929

Query: 116 RLEIALELFHSLPRGVLVADVVT 138
            +E+A ++  ++ R   + D  T
Sbjct: 930 EMEVAEKVMENMVRLQYIPDSAT 952



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D   + I  DG     YI E+V +F +   L+    +     L+D L +  RL++ 
Sbjct: 146 GKSDDGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE---------------- 164
            +++  +    +V DV TY ++I      G +    D+    E+                
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 165 -----NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  + P   T+  LI G  +I        LL +M    V  D    S+++D L K
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK 324


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 15/243 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEML---SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           L+NG C     + AL L   M      G  PDVV + T+  G F+    ++A+  + EM 
Sbjct: 164 LLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 59  RDGVAADTRTYTIFIDGLCKN------------GYIVESVELFRTLRILKCELDIQAYSC 106
             G+  D  TY+  I  LCK             G ++ES +LF  +  +  + DI  YS 
Sbjct: 224 DRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 283

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LIDG C +G+++ A++L   +    L  + VTYS +I+G     +M+ A  LF +ME + 
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           V+P++IT+  ++ G  +    +   EL  ++ E     + S  +I++  L KN+++ ++L
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 403

Query: 227 PSF 229
             F
Sbjct: 404 QMF 406



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 94/165 (56%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM S G+ PD++ +N +  GLF+  +   A +L+  +   G
Sbjct: 319 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 378

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I + GLCKN    +++++F+ L ++  +L+ + ++ +ID L K GR + A 
Sbjct: 379 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 438

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +LF +     LV +  TY +M   +   G +++   LFL ME+N 
Sbjct: 439 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 483



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 115/212 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   +++ A+ L S M+S G+KP+ V ++TL  G  +I ++E A  LF EM+  G
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+ D  TY I + GL +      + EL+  +     ++++  Y+ ++ GLCK+   + AL
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 403

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F +L    L  +  T++IMI  L   G+ D+A DLF+    N + PN  T+  +    
Sbjct: 404 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 463

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           I      ++ +L   M++     D+ +++ +V
Sbjct: 464 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 495



 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 12/229 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF---------- 51
           +ING+ K  + + A + Y EML +GI PDVV ++++   L +   +++ +          
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIE 261

Query: 52  --KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109
             KLFD M R GV  D  TY+  IDG C  G + E+++L   +  +  + +   YS LI+
Sbjct: 262 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 321

Query: 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
           G CK  R+E AL LF  +    +  D++TY+I++ GL+   +   A +L++ + E+    
Sbjct: 322 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 381

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            + T+  ++HG  +       +++   +   ++  +A   +I++D L K
Sbjct: 382 ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLK 430



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 107/219 (48%), Gaps = 19/219 (8%)

Query: 15  ALNLYSEMLSKG---IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           A++ Y+ M   G   + PD+  +  L        +++  F     + + G   +  T+T 
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTP 127

Query: 72  FIDGLCKNGYIVESVEL-FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-- 128
            + GLC +    +++++  R +  L C  ++ +Y+ L++GLC   R + ALEL H +   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADD 187

Query: 129 -RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR---I 184
             G    DVV+Y+ +I+G + +G  DKA+  + +M +  + P+V+T+ ++I    +   +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAM 247

Query: 185 NEP------SKVIE---LLHKMKEKNVMPDASIVSIVVD 214
           ++P       +VIE   L   M    V PD    S ++D
Sbjct: 248 DKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 286



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 48  ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYS 105
           E A  +FDE+ R G  A        +  + ++          R  R    E+  D+  Y 
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
            LI   C++GRL++      ++ +     + +T++ ++ GL  D +   A D+ L  M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
               PNV ++  L++G    N   + +ELLH M +
Sbjct: 152 LGCIPNVFSYNNLLNGLCDENRSQEALELLHMMAD 186



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 48/100 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++G CKNK  + AL ++  +    +K +    N +   L ++ + + A  LF     +
Sbjct: 388 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 447

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           G+  +  TY +  + +   G + E  +LF ++    C +D
Sbjct: 448 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 487


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 16/228 (7%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C   + + A  +  EM+ KG  PD   ++ +   L +  +VE+AF LF+EM+R+G+    
Sbjct: 436 CGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSV 495

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYTI ID  CK G I ++ + F  +    C  ++  Y+ LI    K+ ++ +A ELF  
Sbjct: 496 YTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEM 555

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME----------------ENAVAPN 170
           +       +VVTY+ +I G    GQ++KA  ++  M                  N   PN
Sbjct: 556 MLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPN 615

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           VIT+G L+ G  + N   +  ELL  M      P+  +   V+D   K
Sbjct: 616 VITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCK 663



 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 16/234 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +CK   I+ A   + EML KG  P+VV +  L     +  Q+  A +LF+ M  +
Sbjct: 500 ILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLE 559

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELD--------------IQAY 104
           G   +  TYT  IDG CK G I ++ +++  +R  I   ++D              +  Y
Sbjct: 560 GCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITY 619

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
             L+DGLCK+ R++ A EL  ++       + + Y  +I G    G++  A ++F  M E
Sbjct: 620 GALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSE 679

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +PN+ T+ + I    + N    V+++L KM E +  P+  I + +VD L K
Sbjct: 680 RGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCK 733



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEM--------LSKGIK--------PDVVIHNTLFIGLFEIH 45
           LI+G+CK  +IE A  +Y+ M        + K  K        P+V+ +  L  GL + +
Sbjct: 571 LIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKAN 630

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           +V+ A +L D M   G   +   Y   IDG CK G + ++ E+F  +       ++  YS
Sbjct: 631 RVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYS 690

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
             ID L K  RL++ L++   +       +VV Y+ M+ GL   G+ D+A+ L L MEE 
Sbjct: 691 SFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEK 750

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
              PNV+T+  +I GF +  +  + +EL   M  K   P+     ++++    N
Sbjct: 751 GCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSN 804



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 116/213 (54%), Gaps = 2/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+CK  +++ A  ++++M  +G  P++  +++    LF+ ++++   K+  +M  + 
Sbjct: 657 VIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENS 716

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   YT  +DGLCK G   E+ +L   +    C  ++  Y+ +IDG  KSG++E  L
Sbjct: 717 CTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCL 776

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       + +TY ++I+   ++G +D+A+ L  +M++     ++++   +I GF
Sbjct: 777 ELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF 836

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  E    I LL ++ E   +P  S+  I++D
Sbjct: 837 SQ--EFITSIGLLDELSENESVPVDSLYRILID 867



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 106/198 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK   ++ A  L   ML+ G +P+ ++++ +  G  +I +++ A ++F +M   G
Sbjct: 622 LVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERG 681

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + +  TY+ FID L K+  +   +++   +    C  ++  Y+ ++DGLCK G+ + A 
Sbjct: 682 YSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAY 741

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +       +VVTY+ MI G    G++++  +LF DM     APN IT+  LI+  
Sbjct: 742 KLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHC 801

Query: 182 IRINEPSKVIELLHKMKE 199
                  +  +LL +MK+
Sbjct: 802 CSNGLLDEAYKLLDEMKQ 819



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L+   C+N     AL     +   G KP    +N L        +++ A+ +  EM   
Sbjct: 181 FLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSY 240

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T + F   LCK G   E+ +L           D   Y+ ++ GLC++   E A
Sbjct: 241 AFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFV--PDTVFYNRMVSGLCEASLFEEA 298

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +++ H +     + +VVTY I++ G    GQ+ +   +   M      PN   F +LIH 
Sbjct: 299 MDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHA 358

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + +  + S   +L  KM +    P   + +I +  +  NE
Sbjct: 359 YCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNE 398



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 119/266 (44%), Gaps = 43/266 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G CK  + + A  L  +M  KG  P+VV +  +  G  +  ++E+  +LF +M   G
Sbjct: 727 MVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKG 786

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-------ILKCELDIQAYS--------- 105
            A +  TY + I+  C NG + E+ +L   ++       IL     I+ +S         
Sbjct: 787 CAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGL 846

Query: 106 -----------------CLIDGLCKSGRLEIALELFHSLPRGV--LVADVVTYSIMIHGL 146
                             LID   K+GRLE+AL+L   +       V++   Y+ +I  L
Sbjct: 847 LDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENL 906

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL--------LHKMK 198
            +  ++DKA +L+  M    V P +     LI G I++++  + ++L        +H ++
Sbjct: 907 SHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSICQMDIHWLQ 966

Query: 199 EKNVMPDASIVSIVVDLLAKNEISLN 224
           EK       +V +V+  + + E  ++
Sbjct: 967 EKATGRTEEMVKLVIAAMVEAETGVS 992



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 10/219 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G  +  ++     + S M+++G  P+  I N+L     +      A+KLF +M + 
Sbjct: 319 ILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKC 378

Query: 61  GVAADTRTYTIFIDGLCKN-----GYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKS 114
           G       Y IFI  +C N       I++ VE  +  +  L   L+    S     LC +
Sbjct: 379 GCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGA 438

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           G+ + A ++   +     V D  TYS +I  L +  +++KA  LF +M+ N + P+V T+
Sbjct: 439 GKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTY 498

Query: 175 GTLIHGFIR---INEPSKVI-ELLHKMKEKNVMPDASIV 209
             LI  F +   I +  K   E+LHK    NV+   +++
Sbjct: 499 TILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALI 537



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C+    E A+++   M S    P+VV +  L  G     Q+ R  ++   M  +G
Sbjct: 285 MVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEG 344

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK------SG 115
              +   +   I   CK+     + +LF+ +    C+     Y+  I  +C       S 
Sbjct: 345 CYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSD 404

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            L++  + +  +    +V + V  S     L   G+ D+A  +  +M      P+  T+ 
Sbjct: 405 ILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYS 464

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +I      ++  K   L  +MK   ++P     +I++D   K
Sbjct: 465 KVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCK 507


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK    + A+ L +EM   G++P   I+  L    F+++ V  A  LF+EM+   
Sbjct: 236 LISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQY 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  I GL K G I E+   F  ++   C  D    + +I+ L K+GRL+ A+
Sbjct: 296 CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAM 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY-NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +LF  +     +  VVTY+ +I  L+ +  +  +    F  M+E+ ++P+  T+  LI G
Sbjct: 356 KLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 415

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F + N   K + LL +M EK   P  +    ++D L K
Sbjct: 416 FCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 109/220 (49%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRD 60
           +IN   K   ++ A+ L+ EM +    P VV +NT+   LFE   +       F+ M+  
Sbjct: 341 MINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKES 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++  + TY+I IDG CK   + +++ L   +          AY  LID L K+ R ++A
Sbjct: 401 GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLA 460

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ELF  L      +    Y++MI  L   G++D A ++F +M +   AP+V  +  L+ G
Sbjct: 461 CELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 520

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R     + +  + +M+E   +PD +  +I+++ L K E
Sbjct: 521 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQE 560



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 2/211 (0%)

Query: 11  EIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
           + E    LY+EM ++G   PD + ++ L     ++ + + A +L +EM+ +G+   T+ Y
Sbjct: 209 QYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIY 268

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           T+ +    K   +  ++ LF  +R   C  D+  Y+ LI GL K+GR++ A   F+ + R
Sbjct: 269 TMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR 328

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG-FIRINEPS 188
                D +  + MI+ L   G++D A  LF +M      P+V+T+ T+I   F   +  S
Sbjct: 329 EGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRAS 388

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +V     +MKE  + P +   SI++D   K 
Sbjct: 389 EVPSWFERMKESGISPSSFTYSILIDGFCKT 419



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 81/146 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK   +E A+ L  EM  KG  P    + +L   L +  + + A +LF E++ +
Sbjct: 411 ILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 470

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             ++ +R Y + I  L K G + +++ +F  +  L C  D+ AY+ L+ GL ++G L+ A
Sbjct: 471 CGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEA 530

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGL 146
           L     +     + D+ +Y+I+++GL
Sbjct: 531 LSTMRRMQEHGCIPDINSYNIILNGL 556



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 107/229 (46%), Gaps = 3/229 (1%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADTRT 68
           K +  A+ ++ ++ ++  +P    +N++ I L    Q E+  +L++EM  +G    DT T
Sbjct: 173 KMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMT 232

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y+  I   CK G    +++L   ++    +   + Y+ L+    K   +  AL LF  + 
Sbjct: 233 YSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMR 292

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                 DV TY+ +I GL   G++D+A+  F +M+     P+ I    +I+   +     
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLD 352

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
             ++L  +M     +P     + ++  L +++   + +PS+   ER +E
Sbjct: 353 DAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW--FERMKE 399



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I    K   ++ A+N++ EM   G  PDV  +N L  GL     ++ A      MQ  
Sbjct: 481 VMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEH 540

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           G   D  +Y I ++GL K   ++     F T
Sbjct: 541 GCIPDINSYNIILNGLQKQEDLIVQWRCFLT 571


>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 475

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 105/201 (52%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           +Y +ML  G  PDV+ +N L    + + +++R  +LFDEM RDG++ D  TY I +  L 
Sbjct: 243 VYEQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGLSPDFYTYNILLHILG 302

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           K    + ++     ++ +  +L +  Y+ LIDGL ++G LE        + +     DVV
Sbjct: 303 KGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVV 362

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
            Y++MI G    G+++KA ++F +M      PNV T+ ++I G     E  +   LL +M
Sbjct: 363 CYTVMITGYVVSGELEKAKEMFKEMTVEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEM 422

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
           + +   P+  + S +V  L K
Sbjct: 423 ESRGCNPNFVVYSTLVSYLRK 443



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           E  + +  ++L DEM +DG     RT+ + I    + G   ++V  F   +         
Sbjct: 163 ECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKH 222

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
           +Y+ +++ L    + ++   ++  +       DV+TY+I++   Y  G+MD+   LF +M
Sbjct: 223 SYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEM 282

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV--SIVVDLLAK 218
             + ++P+  T+  L+H   + N+P   +  L+ MKE  +  D S++  + ++D L++
Sbjct: 283 ARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGI--DLSVLHYTTLIDGLSR 338



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G  +   +E       EM+  G +PDVV +  +  G     ++E+A ++F EM  +G
Sbjct: 332 LIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEG 391

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I GLC  G   E+  L + +    C  +   YS L+  L K+G+L  A 
Sbjct: 392 QLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEAR 451

Query: 122 ELFHSL 127
           ++   +
Sbjct: 452 KVIRDM 457



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++   K  +   AL   + M   GI   V+ + TL  GL     +E      DEM + 
Sbjct: 296 ILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGLSRAGNLEACKYFLDEMVKA 355

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   YT+ I G   +G + ++ E+F+ + +     ++  Y+ +I GLC +G    A
Sbjct: 356 GCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEGQLPNVFTYNSMIRGLCMAGEFREA 415

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
             L   +       + V YS ++  L   G++ +A  +  DM
Sbjct: 416 CWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIRDM 457


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 115/219 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK  ++E A +++ EM+ KG KPD++ +++L  GL +  +V+ A KL D M   
Sbjct: 146 VLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIAR 205

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G       YT  + GLCK G I E+V+  + +R  +    +  YS ++ G    G++E A
Sbjct: 206 GPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEA 265

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D ++Y++ I  LY+ G+ ++A  +F  M E    P++ T+G +I  
Sbjct: 266 FAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDN 325

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           F +    +    +L  M +  V P+  I ++++D   K+
Sbjct: 326 FCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKS 364



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 37/257 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ GY    ++E A  +  EM  +   PD + +      L+ I + E A K+F+ M   G
Sbjct: 252 IVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG 311

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY I ID  CK G +  +  + R +     + +   Y+ ++DG  KS RLE AL
Sbjct: 312 CKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEAL 371

Query: 122 ELFHS------LPRGV-------------------------------LVADVVTYSIMIH 144
           EL+        LP  V                               L   +VTYS++IH
Sbjct: 372 ELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIH 431

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL   G  ++A DL  +M +N V P+  T+ +LI       + S+ +ELL +M +  + P
Sbjct: 432 GLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFP 491

Query: 205 DASIVSIVVDLLAKNEI 221
           D      +V +L ++++
Sbjct: 492 DDHTYGTLVQILCRSDV 508



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 37/253 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G CK   I+ A+    EM  + ++P V  ++ +  G   + +VE AF + +EM    
Sbjct: 217 IVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRD 276

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG------ 115
            A DT +YT+FI+ L   G   E+ ++F T+    C+ D+  Y  +ID  CK G      
Sbjct: 277 CAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAAT 336

Query: 116 -----------------------------RLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                                        RLE ALEL+  + +  ++   VTY+ +I+ L
Sbjct: 337 HVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINAL 396

Query: 147 YNDGQMDKAHDLFLDMEENA--VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
               +MD+A +L  +M+     + P+++T+  +IHG  ++    +  +LL +M +  V+P
Sbjct: 397 CKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIP 456

Query: 205 DASIVSIVVDLLA 217
           D    + ++  LA
Sbjct: 457 DCFTYTSLIQTLA 469



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 3/207 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I+ +CK   +  A ++   M    +KP+  I+  +  G  +  ++E A +L+  + +D
Sbjct: 321 IIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKD 380

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD--IQAYSCLIDGLCKSGRLE 118
           G+   T TY   I+ LCK   + E++EL R ++  K EL+  I  YS +I GL K G  E
Sbjct: 381 GILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 440

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A +L   +    ++ D  TY+ +I  L   G++ +A +L  +M +  + P+  T+GTL+
Sbjct: 441 RAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLV 500

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
               R ++     +LL +M      P+
Sbjct: 501 QILCR-SDVDAAWDLLQEMMRNGHTPN 526



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G+    + E    L  EM ++GI  +   H  +   L     +++A   F+    +
Sbjct: 34  ILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEE 93

Query: 61  GV-------AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
                    A D+ TYT  +DGL K G     +E +  +   KCE  +  Y+ L+DGLCK
Sbjct: 94  ACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCK 153

Query: 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           + ++E A ++F  + R     D++ YS +I GL   G++D+A  L   M      P  + 
Sbjct: 154 AHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVA 213

Query: 174 FGTLIHGFI---RINEPSKVIE 192
           + +++ G     RI E  K I+
Sbjct: 214 YTSIVAGLCKCGRIQEAVKTIQ 235



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR- 59
           ++++G+ K+  +E AL LY  +L  GI P  V +NT+   L ++ +++ A +L  EMQR 
Sbjct: 356 MIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRR 415

Query: 60  -DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
            + +     TY++ I GL K G    + +L   +       D   Y+ LI  L  +G++ 
Sbjct: 416 KEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVS 475

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
            A+EL   + +  +  D  TY  ++  L     +D A DL  +M  N   PN  TF
Sbjct: 476 RAMELLEEMLKAGIFPDDHTYGTLVQILCRS-DVDAAWDLLQEMMRNGHTPNEFTF 530



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           +  ++  AL  +   +S+   P+V   N L  G       E    L  EM+  G+ ++  
Sbjct: 9   RGGQLSDALGFFQSSISE---PNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGA 65

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCEL-------DIQAYSCLIDGLCKSGRLEIA 120
           T+ + +  LC    + ++V  F +     C L       D   Y+ ++DGL K+G  +  
Sbjct: 66  THGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAG 125

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE +  +        ++TY++++ GL    ++++A D+F +M      P++I + +LI G
Sbjct: 126 LEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDG 185

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                R++E  K+++L   M  +   P A   + +V  L K
Sbjct: 186 LSKAGRVDEARKLVDL---MIARGPPPTAVAYTSIVAGLCK 223


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   IE AL++   M S+ ++P+   +N L  G  +   V +A  + ++M    
Sbjct: 399 LINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERK 457

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   IDG C++G    +  L   +       D   Y+ +ID LCKS R+E A 
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEAC 517

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF SL +  ++ +VV Y+ +I G    G++++AH +   M      PN +TF  LIHG 
Sbjct: 518 DLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGL 577

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
               +  +   L  KM + ++ P  S  +I++  L K+
Sbjct: 578 CTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKD 615



 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 108/205 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NGYCK   +E A    S ++  G+ PD   + +L +G  +   ++ AFK+F EM   G
Sbjct: 224 MVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKG 283

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   YT  I GLC    I E+++LF  ++   C   ++ Y+ LI  LC S R   AL
Sbjct: 284 CRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEAL 343

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  ++ TY+++I  L +  +++KA +L   M E  + PNVIT+  LI+G+
Sbjct: 344 NLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGY 403

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            +       ++++  M+ +N+ P+ 
Sbjct: 404 CKRGMIEDALDVVELMESRNLRPNT 428



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 99/204 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G C++   + A  L S M  +G+ PD   + ++   L +  +VE A  LFD +++  
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKD 527

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   YT  IDG CK G + E+  +   +    C  +   ++ LI GLC  G+L+ A 
Sbjct: 528 VIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEAT 587

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  L   V T +I+IH L  DG  D A+  F  M  +   P+  T+ T I  +
Sbjct: 588 LLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R        +++ KMKE  V PD
Sbjct: 648 CREGRLQDAEDMVAKMKENGVSPD 671



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYCK + +  A+ + ++ML + + PDVV +N+L  G       + A++L   M   G
Sbjct: 434 LIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  ID LCK+  + E+ +LF +L       ++  Y+ LIDG CK+G++  A 
Sbjct: 493 LVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAH 552

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +     + + +T++ +IHGL  DG++ +A  L   M +  + P V T   LIH  
Sbjct: 553 LMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRL 612

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++  +         +M      PDA   +  +    +
Sbjct: 613 LKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCR 649



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 34/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C ++    ALNL  EM  KGIKP++  +  L   L    ++E+A +L  +M   
Sbjct: 328 VLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEK 387

Query: 61  GVAADTRTYTIFIDGLCKNGYIVES---VELF--RTLR--------ILK--CEL------ 99
           G+  +  TY   I+G CK G I ++   VEL   R LR        ++K  C+       
Sbjct: 388 GLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAM 447

Query: 100 -------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
                        D+  Y+ LIDG C+SG  + A  L   +    LV D  TY+ MI  L
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSL 507

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               ++++A DLF  +E+  V PNV+ +  LI G+ +  + ++   +L KM  KN +P++
Sbjct: 508 CKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNS 567



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   +   ++    +Y EML   + P++  +N +  G  ++  VE A +    +   G
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAG 248

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  I G C+   +  + ++F+ + +  C  +  AY+ LI GLC   R++ A+
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAM 308

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF  +        V TY+++I  L    +  +A +L  +MEE  + PN+ T+  LI   
Sbjct: 309 DLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSL 368

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
               +  K  ELL +M EK +MP+
Sbjct: 369 CSQCKLEKARELLGQMLEKGLMPN 392



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 93/184 (50%)

Query: 34  HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
           +NTL   L     V+   +++ EM  D V  +  TY   ++G CK G + E+ +    + 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 94  ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153
               + D   Y+ LI G C+   L+ A ++F  +P      + V Y+ +IHGL  + ++D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRID 305

Query: 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +A DLF+ M+++   P V T+  LI         S+ + L+ +M+EK + P+    ++++
Sbjct: 306 EAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLI 365

Query: 214 DLLA 217
           D L 
Sbjct: 366 DSLC 369



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RDGVAADTRTY 69
           E +  + L  +M+  G+ P+   +  L +G+ EI  +  A K+FD MQ ++G++     +
Sbjct: 740 EFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVF 799

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
              +   CK     E+ ++   +  +     +++   LI  L K G  E    +F +L +
Sbjct: 800 NALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQ 859

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                D + + I+I G+   G ++  ++LF  ME+N    +  T+  LI G
Sbjct: 860 CGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 90/214 (42%), Gaps = 22/214 (10%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+   K+ + + A   + +MLS G KPD   + T         +++ A  +  +M+ +
Sbjct: 607 ILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKEN 666

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID-------GLCK 113
           GV+ D  TY+  I G    G    +  + + +    CE     +  LI        G  K
Sbjct: 667 GVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVK 726

Query: 114 SG-----------RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            G             +I +EL   +    +  +  +Y  ++ G+   G +  A  +F  M
Sbjct: 727 GGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHM 786

Query: 163 EEN-AVAPNVITFGTLIHGFIRI---NEPSKVIE 192
           ++   ++P+ + F  L+    ++   NE +KV++
Sbjct: 787 QQKEGISPSELVFNALLSCCCKLEKHNEAAKVVD 820



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK ++   A  +  +M+  G  P +     L   L++  + ER   +F  + + G
Sbjct: 802 LLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCG 861

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
              D   + I IDG+ K G +    ELF  +    C    Q YS LI+G
Sbjct: 862 YYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 113/214 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+CK++ +  AL ++ EM S+G+KP VV +N+L  GL    ++  A  L DEM   
Sbjct: 308 VLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSS 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  +  TY   I+G CK   + E+ ELF  +       ++  ++ L+ G CK G++E A
Sbjct: 368 NLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEA 427

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +     + +  TY+ +I G   +G+M++  +L  +M+   V  + +T+  LI  
Sbjct: 428 FLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISA 487

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    EP K   L+ +M +K + P     +I+++
Sbjct: 488 WCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLN 521



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 3/216 (1%)

Query: 2   LINGYCKNKEIEG---ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           LI+GYCK   +     A  +  EM+   + P+ V  N L  G  +   +  A K+F+EMQ
Sbjct: 271 LIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQ 330

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G+     TY   ++GLC  G + E+  L   +     + ++  Y+ LI+G CK   LE
Sbjct: 331 SQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLE 390

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A ELF ++ +  L  +V+T++ ++HG    G+M++A  L   M E    PN  T+  LI
Sbjct: 391 EARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLI 450

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            GF R  +  +V  LL++M+ + V  D    +I++ 
Sbjct: 451 VGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILIS 486



 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK K +E A  L+  +  +G+ P+V+  NTL  G  +  ++E AF L   M   G
Sbjct: 379 LINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKG 438

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I G C+ G + E   L   ++    + D   Y+ LI   C+    + A 
Sbjct: 439 FLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAA 498

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    L    +TY+I+++G   +G +  A +L   ME+     NV+T+  LI G+
Sbjct: 499 RLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGY 558

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
            R  +      LL++M EK ++P+ +   I+
Sbjct: 559 CRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589



 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 3/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++   K  E  G   +Y EM+ + I P+++  NT+  GL ++ ++ +A  + D+M+  G
Sbjct: 201 LLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWG 260

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL---KCELDIQAYSCLIDGLCKSGRLE 118
              +  TY   IDG CK G + +  +    L+ +   K   +   ++ LIDG CK   L 
Sbjct: 261 FWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLS 320

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            AL++F  +    L   VVTY+ +++GL N+G++++A  L  +M  + + PNVIT+  LI
Sbjct: 321 AALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALI 380

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
           +G+ +     +  EL   + ++ + P+
Sbjct: 381 NGYCKKKLLEEARELFDNIGKQGLTPN 407



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+C+  ++E   NL +EM  +G+K D V +N L     E  + ++A +L DEM   G
Sbjct: 449 LIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG 508

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY I ++G C  G +  ++ L + +       ++  Y+ LI G C+ G+LE A 
Sbjct: 509 LKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDAN 568

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            L + +    L+ +  TY I+   +   G
Sbjct: 569 GLLNEMLEKGLIPNRTTYEIIKEEMMEKG 597



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 77/146 (52%), Gaps = 3/146 (2%)

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           +N   V  +E F+     + +L + + + L+  L K         ++  + R  +  +++
Sbjct: 172 ENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLI 231

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE---LL 194
           T++ +I+GL   G+++KA D+  DM+     PNV+T+ TLI G+ ++    K+ +   +L
Sbjct: 232 TFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAIL 291

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNE 220
            +M E  V P++   ++++D   K+E
Sbjct: 292 KEMVENKVSPNSVTFNVLIDGFCKDE 317



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+ KE + A  L  EML KG+KP  + +N L  G      +  A  L  +M+++
Sbjct: 483 ILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKE 542

Query: 61  GVAADTRTYTIFIDGLCKNG 80
           G  A+  TY + I G C+ G
Sbjct: 543 GRWANVVTYNVLIQGYCRKG 562



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NGYC    +  ALNL  +M  +G   +VV +N L  G     ++E A  L +EM   
Sbjct: 518 ILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEK 577

Query: 61  GVAADTRTYTIFIDGLCKNGYI 82
           G+  +  TY I  + + + G++
Sbjct: 578 GLIPNRTTYEIIKEEMMEKGFL 599


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C+    + AL ++  M+ +G+ PD V ++TL  GLF++   E A  L+ ++   G
Sbjct: 409 LLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARG 468

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   I GLCK G +VE+ E+F  ++ L C  D   Y  LIDG CK+  +  A 
Sbjct: 469 FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF 528

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++  ++ R  +   +  Y+ +I GL+   ++ +  DL  +M    + PN++T+G LI G+
Sbjct: 529 KVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGW 588

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     K      +M E  +  +  I S +V  L +
Sbjct: 589 CKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 625



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  +I+ A+ L  EML  G+K ++ I N+L  G  +  ++  A  +   M   
Sbjct: 303 VLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDW 362

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D+ +Y   +DG C+ G+  E+  L   +     E  +  Y+ L+ GLC+ G  + A
Sbjct: 363 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+++H + +  +  D V YS ++ GL+     + A  L+ D+       + ITF T+I G
Sbjct: 423 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +  +  E+  KMK+    PD      ++D   K
Sbjct: 483 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCK 520



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K +  EGA  L+ ++L++G     +  NT+  GL ++ ++  A ++FD+M+  G
Sbjct: 444 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 503

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY   IDG CK   + ++ ++   +        I+ Y+ LI GL KS RL    
Sbjct: 504 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVT 563

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  ++VTY  +I G   +G +DKA   + +M EN ++ N+I   T++ G 
Sbjct: 564 DLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGL 623

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R+    +   L+ KM +    PD
Sbjct: 624 YRLGRIDEANLLMQKMVDHGFFPD 647



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK  EI  A  + + M+   +KPD   +NTL  G         AF L D+M ++G
Sbjct: 339 LINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEG 398

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   + GLC+ G   ++++++  +       D   YS L+DGL K    E A 
Sbjct: 399 IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGAS 458

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L+   L RG      +T++ MI GL   G+M +A ++F  M++   +P+ IT+ TLI G
Sbjct: 459 TLWKDILARG-FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDG 517

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + + +   +  ++   M+ + + P   + + ++  L K+ 
Sbjct: 518 YCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 557



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY    ++E A  +   M  KG+  +VV +  L  G  +  +++ A K+   MQ + 
Sbjct: 233 LINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA 292

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D R Y + IDG C+ G I ++V L   +  L  + ++   + LI+G CK G +  A
Sbjct: 293 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 352

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  D  +Y+ ++ G   +G   +A +L   M +  + P V+T+ TL+ G
Sbjct: 353 EGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 412

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R+      +++ H M ++ V PD    S ++D L K E
Sbjct: 413 LCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 452



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 109/228 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+      A NL  +ML +GI+P V+ +NTL  GL  +   + A +++  M + G
Sbjct: 374 LLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 433

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D   Y+  +DGL K      +  L++ +           ++ +I GLCK G++  A 
Sbjct: 434 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAE 493

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       D +TY  +I G      + +A  +   ME   ++P++  + +LI G 
Sbjct: 494 EIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGL 553

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +     +V +LL +M  + + P+      ++D   K  +   +  S+
Sbjct: 554 FKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSY 601



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   ++ A + Y EM   G+  +++I +T+  GL+ + +++ A  L  +M   G
Sbjct: 584 LIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHG 643

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVE-LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              D   +  F+    +   I +  + L  + +      +I  Y+  I GLCK+G+++ A
Sbjct: 644 FFPD---HECFLKSDIRYAAIQKIADSLDESCKTFLLPNNI-VYNIAIAGLCKTGKVDDA 699

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              F  L     V D  TY  +IHG    G +D+A  L  +M    + PN++T+  LI+G
Sbjct: 700 RRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALING 759

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +   L HK+ +K + P+    + ++D   K
Sbjct: 760 LCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 797



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 32/251 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +  A  +   M  + I P + ++N+L  GLF+  ++     L  EM   G
Sbjct: 514 LIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRG 573

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG CK G + ++   +  +       +I   S ++ GL + GR++ A 
Sbjct: 574 LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEAN 633

Query: 122 ELFHSL--------------------------------PRGVLVADVVTYSIMIHGLYND 149
            L   +                                 +  L+ + + Y+I I GL   
Sbjct: 634 LLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 693

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++D A   F  +      P+  T+ TLIHG+       +   L  +M  + ++P+    
Sbjct: 694 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 753

Query: 210 SIVVDLLAKNE 220
           + +++ L K+E
Sbjct: 754 NALINGLCKSE 764



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 1/193 (0%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           Y +    + AL ++  M   G  P +   N+L   L +  +   A  ++ +M R G+  D
Sbjct: 132 YVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPD 191

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
               +I ++  CK+G + E+    + +  L  E +I  Y  LI+G    G +E A  +  
Sbjct: 192 VFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLK 251

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRI 184
            +    +  +VVTY+++I G     +MD+A  +   M EE A+ P+   +G LI G+ R 
Sbjct: 252 FMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRT 311

Query: 185 NEPSKVIELLHKM 197
            +    + LL +M
Sbjct: 312 GKIDDAVRLLDEM 324



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 63/123 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I G CK  +++ A   +S +  KG  PD   + TL  G      V+ AF+L DEM R 
Sbjct: 685 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRR 744

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK+  +  +  LF  L       ++  Y+ LIDG CK G ++ A
Sbjct: 745 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAA 804

Query: 121 LEL 123
            +L
Sbjct: 805 FKL 807



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
            + A  +FD M + G     R+    ++ L KNG    +  +++ +  +    D+   S 
Sbjct: 138 TKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSI 197

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +++  CK G+++ A      +    +  ++VTY  +I+G  + G ++ A  +   M E  
Sbjct: 198 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 257

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM-PDASIVSIVVD 214
           V+ NV+T+  LI G+ +  +  +  ++L  M+E+  + PD     +++D
Sbjct: 258 VSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLID 306


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 30/248 (12%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPD------------------------------ 30
           +L+   C+N +++GA  L  EM +KG  PD                              
Sbjct: 184 VLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPV 243

Query: 31  VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90
           V ++N L  G+ +  + + AF L +EM   GV  +  +Y+  I  L   G +  S+ +F 
Sbjct: 244 VPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFG 303

Query: 91  TLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
            + +  C  ++Q ++ LI G    GR+  A+ L++ + R  +  +VV Y+ +IHGL +DG
Sbjct: 304 RMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDG 363

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            MD+A  ++  ME++++ PNV T+ T+I+GF +  +     E  +KM      P+  + +
Sbjct: 364 NMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYT 423

Query: 211 IVVDLLAK 218
            +VD+L +
Sbjct: 424 CMVDVLCQ 431



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 108/205 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G+     +  A+ L++ M+ +G+ P+VV +NTL  GL     ++ A  ++++M++D 
Sbjct: 320 LIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDS 379

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+  I G  K+G +V + E +  +    C  ++  Y+C++D LC+    + A 
Sbjct: 380 IRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAF 439

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L  ++        V+T++  I GL   G+++ A ++   ME+    PN+ T+  L+ G 
Sbjct: 440 DLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGL 499

Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
            R N   +   L+ +++E+ V  D 
Sbjct: 500 FRANAFREACGLIRELEERKVEFDC 524



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK    + A +L +EM+ +G+ P+V+ ++T+   L ++  VE +  +F  M   G
Sbjct: 250 LIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRG 309

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              + +T+T  I G    G + ++V L+  +       ++ AY+ LI GLC  G ++ A+
Sbjct: 310 CRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAI 369

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQM----------------------------- 152
            +++ + +  +  +V TYS +I+G    G +                             
Sbjct: 370 SVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVL 429

Query: 153 ------DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
                 D+A DL  +M  +   P VITF   I G  R       + +L +M++   +P+ 
Sbjct: 430 CQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNI 489

Query: 207 SIVSIVVDLLAK 218
              + ++D L +
Sbjct: 490 RTYNELLDGLFR 501



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 98/193 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G+ K+ ++  A   +++M++ G +P+VV++  +   L ++   ++AF L D M  DG
Sbjct: 390 IIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDG 449

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+  FI GLC+ G +  ++ +   +   +C  +I+ Y+ L+DGL ++     A 
Sbjct: 450 CPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREAC 509

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   L    +  D VTY+ +++G   +G   +   L   M  N +  + IT  T ++ +
Sbjct: 510 GLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAY 569

Query: 182 IRINEPSKVIELL 194
            ++ +    I++L
Sbjct: 570 CKLGKVKTAIKVL 582



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 5/177 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I  Y ++   E  L ++  +   G +P V I+N +   L   +  +    L++ M+ +G
Sbjct: 115 VIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEG 174

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY + +  LC+NG +  + +L   +    C+ D  +Y+ +I  +CK G ++ A 
Sbjct: 175 LEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAR 234

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
           EL       V V     Y+ +IHG+  + +  +A DL  +M +  V PNVI++ T+I
Sbjct: 235 ELAMKFEPVVPV-----YNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVI 286



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 1/181 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G C+   +E A+N+  +M      P++  +N L  GLF  +    A  L  E++   
Sbjct: 460 FIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERK 519

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   + G   NG   + ++L   + +   +LD    +  ++  CK G+++ A+
Sbjct: 520 VEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAI 579

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  ++       AD++T++I++ G+ N    ++A     +M +  + PN+ T+  L+ G
Sbjct: 580 KVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLVRG 639

Query: 181 F 181
           F
Sbjct: 640 F 640



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 1/175 (0%)

Query: 45  HQVERAFKLFDEMQRDGVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA 103
           H +  + + F  +   G    T  TY   ID L +N  +     L + +++       + 
Sbjct: 52  HDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQEL 111

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           +  +I    +S   E  L++F+ +        V  Y++++  L +       + L+ +M+
Sbjct: 112 FQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMK 171

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              + PNV T+  L+    +  +     +LL +M  K   PD    + V+  + K
Sbjct: 172 SEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCK 226


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 25/257 (9%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+I G  +   IE AL+    M  KG  PD   +NT+   L +   +ERA  L  EM ++
Sbjct: 352 IMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN 411

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D+ T TI I GLCK G + E++++F  +    C+  +  Y+ LIDG  + GRLE A
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 121 LELFHSLPRG-------------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167
             LFH +  G               V D  +   ++H +   GQ+ KA+ L   + ++ V
Sbjct: 472 RMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGV 531

Query: 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD------------L 215
            P+V+T+ TLI+G  +       + L  +++ K + PD      ++D            +
Sbjct: 532 VPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMM 591

Query: 216 LAKNEISLNSLPSFTVH 232
           L +N +   S PS +++
Sbjct: 592 LFQNILQSGSSPSLSIY 608



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL LY+ M++ G  P+   +N L  GL +      A K+FDEM   G+  + + YT+ + 
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            LC  G I E+V+L  +++   C  D   Y+  + GLCK GR+  A +    L  G    
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
            +  YS +I GL+   + D+    +  M E  ++P+V+ +  +I G          +  L
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 195 HKMKEKNVMPDASIVSIVVDLL 216
             MK+K  +PD    + V+ +L
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVL 392



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK      AL ++ EML +GI P+V I+  L   L    +++ A +L   M+  
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY  F+ GLCK G + E+ +    L+     L ++ YSCLIDGL ++ R +  
Sbjct: 272 GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEG 331

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              + ++    +  DVV Y+IMI G    G+++ A      M++    P+   + T++  
Sbjct: 332 FGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKV 391

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +  +   L  +M + N++ D++  +I++  L K
Sbjct: 392 LCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCK 429



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 35/236 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++  C   +I+ A+ L   M  KG  PD V +N    GL ++ +V  AF+    +Q  
Sbjct: 247 VLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDG 306

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A   + Y+  IDGL +     E    ++T+       D+  Y+ +I G  ++GR+E A
Sbjct: 307 GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDA 366

Query: 121 -------------------------------LELFHSLP----RGVLVADVVTYSIMIHG 145
                                          LE  H+L     +  LV D  T +IMI G
Sbjct: 367 LSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           L   G +D+A  +F +M E+   P V+T+  LI GF R     +   L HKM+  N
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGN 482



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 99/199 (49%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+  +S M     +P   ++NT+   L +   +  A  L++ M   G A +  TY + +D
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMD 215

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLCK G   +++++F  +       +++ Y+ L+  LC +G+++ A++L  S+     + 
Sbjct: 216 GLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP 275

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY+  + GL   G++++A    + +++   A  +  +  LI G  +     +     
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335

Query: 195 HKMKEKNVMPDASIVSIVV 213
             M E+N+ PD  + +I++
Sbjct: 336 KTMLERNISPDVVLYTIMI 354



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  C++ ++  A  L   ++  G+ PDVV +NTL  GL +   ++ A +LF E+Q  G
Sbjct: 506 LVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  TY   IDGL +     +++ LF+ +        +  Y+ ++  LC+  +L  A+
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 122 ELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-HDLF-LDMEENAVAPNVITFGTLI 178
            L+   LP+              H    DG +D    +L  +D E  +++ N  T   + 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGSISSNPYTIWLI- 684

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G  ++      + + H ++E  +    +  +++++ L  + 
Sbjct: 685 -GLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDR 725



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 70/161 (43%)

Query: 45  HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104
           H  E  F    + +  G+ A +  +   +      G   ++V+ F  +   +       Y
Sbjct: 116 HADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVY 175

Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
           + ++  L  SG + +AL L++ +       +  TY++++ GL   G    A  +F +M +
Sbjct: 176 NTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLD 235

Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
             + PNV  +  L+       +  + ++LL  MK+K  +PD
Sbjct: 236 RGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPD 276



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 51/115 (44%)

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
            A++ L+     +GR   A++ F  +           Y+ ++  L + G +  A  L+  
Sbjct: 138 SAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNR 197

Query: 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           M     APN  T+  L+ G  +       +++  +M ++ +MP+  I ++++  L
Sbjct: 198 MVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSL 252


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 108/215 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYC+   ++ AL + + M   GI+ DV  +NTL  GL  ++++  A  L   M   G
Sbjct: 313 MIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKG 372

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  I   CK G +VE+  LFR +        +  Y+ ++DG  K G +  A 
Sbjct: 373 VPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAE 432

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + +  LV DV TY+ ++HG   +G++D A  LF +M+     PNV+ +  LI G 
Sbjct: 433 RFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGL 492

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            +     +  +L   M +  + PD S+ S +V  L
Sbjct: 493 AKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSL 527



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 103/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN YC+   +  A  ++ E +  GI+P+   +  L  G  +I Q+E A  L  +MQ  G
Sbjct: 243 VINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRG 302

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   +   IDG C+ G +  ++++   +  +  ELD+  Y+ L  GLC+  R+  A 
Sbjct: 303 VGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAK 362

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L H +    +  + VTY+ +I     +G M +A  LF +M      P+V+T+  ++ G+
Sbjct: 363 TLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGY 422

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           I+     +      +M++K ++PD
Sbjct: 423 IKKGSIREAERFRKEMEKKGLVPD 446



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING+CK  ++E A  L ++M  +G+  + +I NT+  G      V+ A K+   M++ 
Sbjct: 277 VLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKM 336

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  TY     GLC+   + E+  L   +       +   Y+ LI   CK G +  A
Sbjct: 337 GIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEA 396

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +     +  VVTY++M+ G    G + +A     +ME+  + P+V T+ +L+HG
Sbjct: 397 RRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHG 456

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                +    ++L  +MK +   P+    + ++  LAK
Sbjct: 457 HCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAK 494



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK  ++  A  L+ EM  KG  P VV +N +  G  +   +  A +   EM++ G
Sbjct: 383 LISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKG 442

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + G C NG +  +++LF  ++    E ++ AY+ LI GL K GR E A 
Sbjct: 443 LVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAF 502

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           +L+  + +  L  D   YS ++  L+ D + D  H
Sbjct: 503 QLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDIHH 537



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 3/200 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++G+CK+  ++ A  L  EM   G++ + + +N+L           R  +L + M+  
Sbjct: 137 VVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENG 196

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A   TYTI +D L   G I +   +   ++      D+  Y+ +I+  C++G +  A
Sbjct: 197 GIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRA 256

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E+F       +  +  TY ++I+G    GQM+ A  L  DM+   V  N I F T+I G
Sbjct: 257 SEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDG 316

Query: 181 FIR---INEPSKVIELLHKM 197
           + R   ++   KV   + KM
Sbjct: 317 YCRQGMVDNALKVKAAMEKM 336



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 56/119 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++++GY K   I  A     EM  KG+ PDV  + +L  G     +V+ A KLF+EM+  
Sbjct: 417 VMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHR 476

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G   +   YT  I GL K G   E+ +L+  +       D   YS L+  L    R +I
Sbjct: 477 GTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDI 535



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%)

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
           L R L      +   A S ++DG CKSGR++ A  L   +PR  +  + + Y+ ++    
Sbjct: 119 LTRALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYV 178

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
                 +  +L   ME   +   V T+  L+       + SKV  ++ +MK KNV  D  
Sbjct: 179 RRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVY 238

Query: 208 IVSIVVD 214
           + + V++
Sbjct: 239 LYTAVIN 245



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 41/78 (52%)

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           S+++ G    G++D A  L  +M  + V  N + + +L+  ++R  + ++V ELL  M+ 
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMEN 195

Query: 200 KNVMPDASIVSIVVDLLA 217
             +       +I+VD L+
Sbjct: 196 GGIEATVGTYTILVDSLS 213


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 107/210 (50%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L++G  K   IE A NL++EML  G K +  I+N L  G       E+   LF +M   G
Sbjct: 945  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 1004

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YTI ID LCK G + + +  FR L  +  E D+  Y+ LIDGL KS RLE A+
Sbjct: 1005 INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 1064

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             LF+ + +  +V ++ TY+ +I  L   G+  +A  ++ ++      PNV T+  LI G+
Sbjct: 1065 SLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1124

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSI 211
                          +M     +P++S   I
Sbjct: 1125 SVSGSTDSAYAAYGRMIVGGCLPNSSTCHI 1154



 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + IN Y K+ E   A+  Y  M SKGI PDVV  N +  GL +  ++  A ++F E++  
Sbjct: 489 LFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM 548

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ DT TYT+ I    K     E+V++F  +    C  D+   + LID L K+GR + A
Sbjct: 549 GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEA 608

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F+ L    L     TY+ ++ GL  +G++ +   L  +M  +   PN+IT+ T++  
Sbjct: 609 WQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDC 668

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +    +  +++L+ M  K  +PD S  + V+  L K E
Sbjct: 669 LCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE 708



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 110/204 (53%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G  K++ +E A++LY  ++S+G  P    +  L  GL +  ++E A  LF+EM   G
Sbjct: 910  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 969

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              A+   Y I ++G    G   +   LF+ +       DI++Y+ +ID LCK+G+L   L
Sbjct: 970  CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGL 1029

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
              F  L    L  D++TY+++I GL    ++++A  LF +M++  + PN+ T+ +LI   
Sbjct: 1030 TYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHL 1089

Query: 182  IRINEPSKVIELLHKMKEKNVMPD 205
             +  + ++  ++  ++  K   P+
Sbjct: 1090 GKAGKAAEAGKMYEELLTKGWKPN 1113



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 105/203 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C+   +  AL ++ EM  KGI P+   +N+L  G  +  +   A +LF  M   G
Sbjct: 420 VIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHG 479

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+ +FI+   K+G  +++++ +  ++      D+ A + ++ GL KSGRL +A 
Sbjct: 480 PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAK 539

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH L    +  D +TY++MI       + D+A  +F DM EN   P+V+   +LI   
Sbjct: 540 RVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTL 599

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +     +  ++ +++KE N+ P
Sbjct: 600 YKAGRGDEAWQIFYQLKEMNLEP 622



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 115/229 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  + K +++E  L L  EM + G+KP+V  +      L +  + + A+++  EM+ +
Sbjct: 279 VLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENE 338

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+T+ I  LC  G I ++ ++F  ++    + D   Y  L+D    +G  +  
Sbjct: 339 GCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSV 398

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+++++       +VV Y+ +I  L   G++ +A ++F +M++  + P   ++ +LI G
Sbjct: 399 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 458

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           F++ +     +EL   M      P+     + ++   K+  S+ ++  +
Sbjct: 459 FLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRY 507



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            +L++   K+  IE  L +  EM  KG +   V +NT+  GL +  ++E+A  L+  +   
Sbjct: 874  LLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ 933

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G +    TY   +DGL K G I ++  LF  +    C+ +   Y+ L++G   +G  E  
Sbjct: 934  GFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKV 993

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
              LF  +    +  D+ +Y+I+I  L   GQ++     F  + E  + P++IT+  LI G
Sbjct: 994  CHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG 1053

Query: 181  FIRINEPSKVIELLHKMKEKNVMPD 205
              +     + + L ++M++K ++P+
Sbjct: 1054 LGKSKRLEEAVSLFNEMQKKGIVPN 1078



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 105/212 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + +  + A  + +EM ++G KPDV+ H  L   L +  ++  A  +F +M++     D  
Sbjct: 321 QARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRV 380

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   +D    NG     +E++  ++      ++ AY+ +ID LC+ GR+  ALE+F  +
Sbjct: 381 TYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 440

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +  +V +  +Y+ +I G     +   A +LF  M+ +   PN  T    I+ + +  E 
Sbjct: 441 KQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGES 500

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            K I+    MK K ++PD    + V+  LAK+
Sbjct: 501 IKAIQRYELMKSKGIVPDVVAGNAVLFGLAKS 532



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI   CK K+   A  L  +  S G+      +N+L  GL + + ++ A  LF EM+  G
Sbjct: 805  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELG 864

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
               D  TY + +D + K+  I E +++   +     E     Y+ +I GL KS RLE A+
Sbjct: 865  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 924

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +L+++L          TY  ++ GL   G+++ A +LF +M E     N   +  L++G 
Sbjct: 925  DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 984

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   KV  L   M ++ + PD    +I++D L K
Sbjct: 985  RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCK 1021



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI G      I+ A  L++EM   G  PD   +N L   + +  ++E   K+ +EM R G
Sbjct: 840  LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 899

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   TY   I GL K+  + ++++L+  L           Y  L+DGL K+GR+E A 
Sbjct: 900  YESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAE 959

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             LF+ +      A+   Y+I+++G    G  +K   LF DM +  + P++ ++  +I   
Sbjct: 960  NLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTL 1019

Query: 182  IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +  + +  +    ++ E  + PD    ++++D L K++
Sbjct: 1020 CKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSK 1058



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 92/191 (48%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y  M+  G+ P V  ++ L +   +   VE    L  EM+  GV  +  +YTI I 
Sbjct: 258 ALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIR 317

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            L +     E+  +   +    C+ D+  ++ LI  LC +GR+  A ++F  + +     
Sbjct: 318 VLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKP 377

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY  ++    ++G+     +++  M+ +    NV+ +  +I    ++    + +E+ 
Sbjct: 378 DRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMF 437

Query: 195 HKMKEKNVMPD 205
            +MK+K ++P+
Sbjct: 438 DEMKQKGIVPE 448



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 109/206 (52%), Gaps = 4/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I    K  + + A+ ++ +M+     PDV++ N+L   L++  + + A+++F +++  
Sbjct: 559 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEM 618

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY   + GL + G + E + L   +       ++  Y+ ++D LCK+G +  A
Sbjct: 619 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 678

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++ +S+     + D+ +Y+ +I+GL  + + ++A  +F  M++  + P+  T  T++  
Sbjct: 679 LDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKK-VLIPDYATLCTILPS 737

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
           F++I     + E LH +KE  + P +
Sbjct: 738 FVKIG---LMKEALHIIKEYFLQPGS 760



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C    I  A +++ +M     KPD V + TL     +  + +   ++++ M+ D
Sbjct: 349 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKAD 408

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   YT  ID LC+ G + E++E+F  ++      +  +Y+ LI G  K+ R   A
Sbjct: 409 GYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDA 468

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF  +       +  T+ + I+     G+  KA   +  M+   + P+V+    ++ G
Sbjct: 469 LELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFG 528

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +         + H++K   V PD    ++++   +K
Sbjct: 529 LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSK 566



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 101/214 (47%), Gaps = 1/214 (0%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           G  K+  +  A  ++ E+ + G+ PD + +  +     +  + + A K+F +M  +    
Sbjct: 528 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 587

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D       ID L K G   E+ ++F  L+ +  E     Y+ L+ GL + G+++  + L 
Sbjct: 588 DVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 647

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +       +++TY+ ++  L  +G ++ A D+   M      P++ ++ T+I+G ++ 
Sbjct: 648 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++   +  +MK K ++PD + +  ++    K
Sbjct: 708 ERYNEAFSIFCQMK-KVLIPDYATLCTILPSFVK 740



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            IL+NG+      E   +L+ +M+ +GI PD+  +  +   L +  Q+      F ++   
Sbjct: 979  ILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEM 1038

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  D  TY + IDGL K+  + E+V LF  ++      ++  Y+ LI  L K+G+   A
Sbjct: 1039 GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEA 1098

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
             +++  L       +V TY+ +I G    G  D A+  +  M      PN  T
Sbjct: 1099 GKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 90/197 (45%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M   GI  +   +N L   L +      A +++  M  DGV    RTY++ +    K   
Sbjct: 230 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRD 289

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +   + L R +     + ++ +Y+  I  L ++ R + A  +   +       DV+T+++
Sbjct: 290 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTV 349

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I  L + G++  A D+F  M+++   P+ +T+ TL+  F    E   V+E+ + MK   
Sbjct: 350 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADG 409

Query: 202 VMPDASIVSIVVDLLAK 218
              +    + V+D L +
Sbjct: 410 YNDNVVAYTAVIDALCQ 426



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 84/193 (43%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           +K +V     +F GL     +  A      M+  G+  +  TY   +  L K+G+  E++
Sbjct: 200 VKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREAL 259

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           E+++ + +      ++ YS L+    K   +E  L L   +    +  +V +Y+I I  L
Sbjct: 260 EVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVL 319

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               + D+A+ +  +ME     P+VIT   LI         S   ++  KMK+ +  PD 
Sbjct: 320 GQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDR 379

Query: 207 SIVSIVVDLLAKN 219
                ++D  A N
Sbjct: 380 VTYITLLDKFADN 392



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 4/215 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CKN  +  AL++   M +KG  PD+  +NT+  GL +  +   AF +F +M++  +  D 
Sbjct: 670 CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDY 728

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEIALELF 124
            T    +    K G + E++ + +    L+        SC  L++G+ K    E ++E  
Sbjct: 729 ATLCTILPSFVKIGLMKEALHIIKEY-FLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFA 787

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +    +  D      +I  L    +  +AH+L    +   V+    ++ +LI G +  
Sbjct: 788 EIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDE 847

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           N       L  +MKE    PD    ++++D + K+
Sbjct: 848 NLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKS 882



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 1/205 (0%)

Query: 15  ALNLYSE-MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
           AL++  E  L  G K D    ++L  G+ +    E++ +  + +   G+  D       I
Sbjct: 747 ALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLI 806

Query: 74  DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
             LCK    +E+ EL +  +     L   +Y+ LI GL     ++IA  LF  +      
Sbjct: 807 KHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCG 866

Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
            D  TY++++  +    ++++   +  +M         +T+ T+I G ++     + I+L
Sbjct: 867 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDL 926

Query: 194 LHKMKEKNVMPDASIVSIVVDLLAK 218
            + +  +   P       ++D L K
Sbjct: 927 YYNLMSQGFSPTPCTYGPLLDGLLK 951



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 6/212 (2%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNT----LFIGLFEIH-QVERAFKLFDEMQRDGVAA 64
           +  +G         S   +P VV H T      + L   H +V    ++FD MQR  V A
Sbjct: 144 RSADGPAEALERFRSAARRPRVV-HTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKA 202

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           +  T+     GL   G +  +      ++     L+   Y+ L+  L KSG    ALE++
Sbjct: 203 NVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVY 262

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +    +V  V TYS+++        ++    L  +ME + V PNV ++   I    + 
Sbjct: 263 KVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQA 322

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
               +   +L +M+ +   PD    ++++ +L
Sbjct: 323 RRFDEAYRILAEMENEGCKPDVITHTVLIQVL 354



 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 74/161 (45%)

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           +R  V   T +    +D +  +G + +  E+F  ++    + ++  ++ +  GL   G L
Sbjct: 161 RRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGL 220

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A      +    +V +  TY+ +++ L   G   +A +++  M  + V P+V T+  L
Sbjct: 221 RSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVL 280

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  F +  +   V+ LL +M+   V P+    +I + +L +
Sbjct: 281 MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQ 321


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 106/213 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C+ K +  A  +++EML +G KPD+V HN +  GL    +   A K F+ M+  
Sbjct: 248 VLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAK 307

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + D R+YTI I  LCK   + E+V  F  +    C  D   Y+CL+ G     R+++ 
Sbjct: 308 GPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMV 367

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   +       D  TY+ +I  + +    D A  ++  M +N + P++ ++  ++  
Sbjct: 368 YELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKS 427

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + RI        +  +M +K   PD +  ++ +
Sbjct: 428 YFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFI 460



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 84/176 (47%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           P++  +  L  G   +  +  A ++++EM  +G   D  T+ I ++GL ++    ++++ 
Sbjct: 241 PNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKF 300

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
           F  ++      D+++Y+ LI  LCK  +++ A+  F+ +       D   Y+ ++ G  N
Sbjct: 301 FEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGN 360

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
             +MD  ++L  +M+E    P+  T+  LI        P   + +  KM +  + P
Sbjct: 361 HKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEP 416



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 102/221 (46%), Gaps = 1/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  +   KE + A+ ++  M +   +  V   N L   L      + A  LF +++  
Sbjct: 179 IAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFGKLE-G 237

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               + RTYT+ ++G C+   ++E+  ++  +     + DI  ++ +++GL +S +   A
Sbjct: 238 RFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDA 297

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++ F  +       DV +Y+I+I  L    +M +A   F +M ++   P+   +  L+ G
Sbjct: 298 IKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTG 357

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           +        V ELL +MKEK   PD    + ++ L+    +
Sbjct: 358 YGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRM 398



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 96/218 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   CK  +++ A+  + EM+  G  PD  ++  L  G     +++  ++L  EM+  
Sbjct: 318 ILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEK 377

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D +TY   I  +       ++V +++ +     E  I +Y+ ++    +    E+ 
Sbjct: 378 GCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMG 437

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  + +     D  +Y++ I GL + G+ ++A     +M E  +    + +      
Sbjct: 438 HAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAAD 497

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F R  +P  + EL  KMK       +++ +   +++ K
Sbjct: 498 FSRAGKPDILEELAQKMKFSGKFEVSNVFARWAEMMKK 535


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 111/214 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+GYCK    + AL + +++  KG++PD+  +N+L  G  +   +  A ++   M +DG
Sbjct: 567 FIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDG 626

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y  FI G      + E++  +  +     +LD   Y+ LIDG  K G +  AL
Sbjct: 627 LLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFAL 686

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+  +     + D +T++ + HGL  +G +D A  L  +M    + PNV+ +  LI+G+
Sbjct: 687 KLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGY 746

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           +R  +  +   L  +M E+ +MPD +   I+V +
Sbjct: 747 LRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGM 780



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 35/249 (14%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           YC N  ++ A+ LY+EM  KG  P+VV + TL  G       ++A+ L  EM+++GV+ +
Sbjct: 431 YCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCN 490

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLR-----------------ILKCEL--------- 99
             TY   I+GLC  G + E  E+ +                     +K  +         
Sbjct: 491 DYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQ 550

Query: 100 ---------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
                    +I  Y+  IDG CK+   ++AL++ + +    L  D+  Y+ +I+G   +G
Sbjct: 551 QMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEG 610

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
            M  A  + + M ++ + PN+  + + I G+  +    + +    KM ++ +  D +  +
Sbjct: 611 NMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYT 670

Query: 211 IVVDLLAKN 219
            ++D  +K+
Sbjct: 671 TLIDGFSKD 679



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 36/248 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-------- 53
           L++GYC  +E+  AL+++ E L  G+ P  V +  L  G  E    E+A++L        
Sbjct: 288 LMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHG 347

Query: 54  ---------------------------FDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                      F EM   G+  D  TY I I  LC+   I E++
Sbjct: 348 LLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREAL 406

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            L+  +     +  I  Y  L+   C +G ++ A++L+  +P      +VVTY+ ++ G 
Sbjct: 407 NLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGH 466

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
            N    DKA+ L  +M++N V+ N  T+ TLI+G   +    +V E+L + + +  +P A
Sbjct: 467 INKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTA 526

Query: 207 SIVSIVVD 214
              + +++
Sbjct: 527 MTYNSIIN 534



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK----GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           LING C    + G +    EML +    G  P  + +N++  G  +   +  AF ++ +M
Sbjct: 497 LINGLC----VVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              G+  +  TYT FIDG CK      ++++   +R      DI AY+ LI G C+ G +
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNM 612

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             AL++   + +  L+ ++  Y+  I G  N   M++A   +  M +  +  +  T+ TL
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTL 672

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           I GF +    +  ++L  +M  K  +PD    + +   L +N
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRN 714



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 4/220 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING+ K   +  A  +Y +M +KGI P++V + +   G  +    + A K+ ++++  G
Sbjct: 532 IINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
           +  D   Y   I G C+ G +  ++++   + +LK  L  +I  Y+  I G      +E 
Sbjct: 592 LRPDIAAYNSLIYGFCQEGNMSHALQVL--VLMLKDGLLPNISVYNSFITGYKNLKMMEE 649

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL  +  + +  +  D  TY+ +I G   DG +  A  L+ +M      P+ ITF  L H
Sbjct: 650 ALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTH 709

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           G  R  +     +LL +M   ++ P+  + +++++   +N
Sbjct: 710 GLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRN 749



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 7/230 (3%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ L+ EM +  I+PD  + +     L ++    RA  +  +MQ  G      T+   +D
Sbjct: 196 AVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVD 255

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            L K G + E++ +   L     ++ +   + L+ G C    +  AL++F    R  LV 
Sbjct: 256 VLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVP 315

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
             VTY+++I G   +G  +KA++L   M ++ + P+   F  +I G +        + L 
Sbjct: 316 TDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLF 375

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDESNVK 244
            +M +  + PDA   +I++  L +      +L  +      E+++E+ VK
Sbjct: 376 KEMADSGI-PDAFTYNILIHWLCQRRKIREALNLW------EKMNETGVK 418



 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 77/193 (39%)

Query: 21  EMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
            M ++G+ PD      L            A  L  EM+  G   D   + + +    K G
Sbjct: 132 SMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEG 191

Query: 81  YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
              ++V LF  +   + E D +  S  I  LCK      AL +   +     V    T++
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
            ++  L   G+M++A  +  ++       +V+   TL+HG+    E  K +++  +    
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 201 NVMPDASIVSIVV 213
            ++P     ++++
Sbjct: 312 GLVPTDVTYTVLI 324


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG+C+ K +  A   ++EM+ KG KPD++ H+T+  GL +  +   A KLF+ M+  
Sbjct: 377 VLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAK 436

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G + + RTYTI I  LCK   + E+VE F  +    C+ D   Y+CLI G     +++  
Sbjct: 437 GPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKV 496

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +      AD  TY+ +I  + N    D A  ++  M +N + P + T+  ++  
Sbjct: 497 YALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKS 556

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           +           +  +M  K   PD
Sbjct: 557 YFYTRNYEMGCAVWKEMGRKGCCPD 581



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 4/239 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI   CK  +++ A+  + EM+  G +PD  ++  L  G     ++++ + L  EM+  
Sbjct: 447 ILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEK 506

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G  AD RTY   I  +       ++V +++ +     +  +  Y+ ++     +   E+ 
Sbjct: 507 GCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMG 566

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  + R     D  +Y + I GL   G+ ++A     +M E  +    + +      
Sbjct: 567 CAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAAD 626

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
           F R  +P  + EL  KMK +     +++ +   +++ K     + + S    +RQ ++D
Sbjct: 627 FSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVKRRDPVKS----DRQWDLD 681



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 35  NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           N L   L      + A  LF++++ D    + RTYT+ ++G C+   +VE+   +  +  
Sbjct: 342 NCLLDNLGRAKLGKEAQALFEKLE-DRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMID 400

Query: 95  LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154
              + DI A+  +++GL K  +   A++LF  +       +V TY+I+I  L    +M +
Sbjct: 401 KGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKE 460

Query: 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           A + F +M ++   P+   +  LI GF    +  KV  LL +MKEK    D    + ++ 
Sbjct: 461 AVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIK 520

Query: 215 LLAKNEI 221
           L+   ++
Sbjct: 521 LMTNRQM 527


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 106/216 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  +    + L+ EM S G  PD V +N L   L  + ++  A  L +EM+ +
Sbjct: 412 ILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESN 471

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G    T TY   ID LCK   I E+ E+F  +           ++ LIDGLCK+ R++ A
Sbjct: 472 GCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDA 531

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            EL   + +  L  + +TY+ ++      G + KA D+   M  N    +V+T+GTLI+G
Sbjct: 532 TELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLING 591

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             +       ++LL  M+ K + P     + V+  L
Sbjct: 592 LCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 627



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN   KN E++ A  + ++M+ +G  PD    NTL + L   +++E A  L  E+   G
Sbjct: 343 VINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKG 402

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  T+ I I+ LCK G     + LF  ++   C  D   Y+ LID LC  G+L  AL
Sbjct: 403 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNAL 462

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L + +         VTY+ +I  L    ++++A ++F  M+   ++ + +TF TLI G 
Sbjct: 463 DLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGL 522

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +        EL+ +M ++ + P+
Sbjct: 523 CKAKRIDDATELIEQMVKEGLQPN 546



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LINGYCK   +E AL    + ++ G +PD V +NT   GL +   V  A K+ D M ++
Sbjct: 272 VLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQE 331

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY   I+ L KNG + E+  +   +    C  D   ++ LI  L    RLE A
Sbjct: 332 GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEA 391

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   L    L  DV T++I+I+ L   G       LF +M+ +   P+ +T+  LI  
Sbjct: 392 LDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV-SIVVDLLAK 218
              + +    ++LL++M E N  P +++  + ++D L K
Sbjct: 452 LCSMGKLGNALDLLNEM-ESNGCPRSTVTYNTIIDALCK 489



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G+ +   IE AL + ++M+  G  P  V  N L  G  ++ +VE A     +   DG
Sbjct: 238 LMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADG 297

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY  F+ GLC+NG++  ++++   +     + D+  Y+ +I+ L K+G L+ A 
Sbjct: 298 FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + + +  RG L  D  T++ +I  L +  ++++A DL  ++    ++P+V TF  LI+ 
Sbjct: 358 GIVNQMVDRGCL-PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINA 416

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-----------NEISLNSLPSF 229
             ++ +P   I L  +MK     PD    +I++D L             NE+  N  P  
Sbjct: 417 LCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRS 476

Query: 230 TV 231
           TV
Sbjct: 477 TV 478



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 1/206 (0%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           ++Y+EM  +GI+PDVV  NTL   L   HQV  A  + +EM   GVA D  T+T  + G 
Sbjct: 183 SVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGF 242

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
            + G I  ++ +   +    C       + LI+G CK GR+E AL             D 
Sbjct: 243 IEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQ 302

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VTY+  +HGL  +G +  A  +   M +    P+V T+ T+I+   +  E  +   ++++
Sbjct: 303 VTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQ 362

Query: 197 MKEKNVMPDASIV-SIVVDLLAKNEI 221
           M ++  +PD +   +++V L ++N +
Sbjct: 363 MVDRGCLPDTTTFNTLIVALSSQNRL 388



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 100/218 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  C   ++  AL+L +EM S G     V +NT+   L +  ++E A ++FD+M   
Sbjct: 447 ILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQ 506

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++    T+   IDGLCK   I ++ EL   +     + +   Y+ ++   CK G ++ A
Sbjct: 507 GISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKA 566

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++  ++       DVVTY  +I+GL   G+   A  L   M    + P    +  +I  
Sbjct: 567 ADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQS 626

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R N     + L  +M E    PDA    IV   L +
Sbjct: 627 LFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCR 664



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 1/200 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK K I+ A  L  +M+ +G++P+ + +N++     +   +++A  + + M  +G
Sbjct: 518 LIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANG 577

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLCK G    +++L R +RI       +AY+ +I  L +   L  AL
Sbjct: 578 FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDAL 637

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGL-YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            LF  +       D +TY I+   L    G + +A D  ++M      P   +F  L  G
Sbjct: 638 NLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEG 697

Query: 181 FIRINEPSKVIELLHKMKEK 200
            + +     +I  +  + EK
Sbjct: 698 LLNLGMDDYLISAIELIIEK 717



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 4/210 (1%)

Query: 13  EGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           E AL + +  L++    P   ++  +   L      +    L  EM+R+G          
Sbjct: 70  EAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRS 129

Query: 72  FIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           F++   +     ++V+L            + D   ++ L++ L +  +L++   +++ + 
Sbjct: 130 FVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMT 189

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
              +  DVVT + +I  L    Q+  A  +  +M  + VAP+  TF TL+ GFI      
Sbjct: 190 GRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIE 249

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             + +  KM E    P    V+++++   K
Sbjct: 250 AALRVKAKMMEAGCSPTGVTVNVLINGYCK 279



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/205 (18%), Positives = 85/205 (41%), Gaps = 3/205 (1%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQRD--GVAADTRTYTIFID 74
           L  EM  +G +   V+  +       + + + A  L  +++  D  GV ADT  +   ++
Sbjct: 111 LVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLN 170

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            L +   +     ++  +     + D+   + LI  LC++ ++  A+ +   +    +  
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAP 230

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D  T++ ++ G   +G ++ A  +   M E   +P  +T   LI+G+ ++      +  +
Sbjct: 231 DETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYI 290

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +       PD    +  V  L +N
Sbjct: 291 QQEIADGFEPDQVTYNTFVHGLCQN 315


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE----- 56
           LING+CK  E++ A +L+  M  +GI+PD++ ++TL  G F+   +    KLF +     
Sbjct: 292 LINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKG 351

Query: 57  ------------------------------MQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                         M   G++ +  TYTI I GLC++G I E+ 
Sbjct: 352 VKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF 411

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++  +     E  I  YS LIDG CK G L     L+  + +     DVV Y +++ GL
Sbjct: 412 GMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 471

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M  A    + M   ++  NV+ F +LI G+ R+N   + +++   M    + PD 
Sbjct: 472 SKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDV 531

Query: 207 SIVSIVV 213
           +  + V+
Sbjct: 532 ATFTTVM 538



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 117/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C++  I  A  +Y ++L +G++P +V +++L  G  +   +   F L+++M + 
Sbjct: 396 ILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKM 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y + +DGL K G ++ ++     +      L++  ++ LIDG C+  R + A
Sbjct: 456 GYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  DV T++ ++     +G++++A  LF  M +  + P+ + + TLI  
Sbjct: 516 LKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +P+  ++L   M+   +  D ++ ++V+ LL K
Sbjct: 576 FCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFK 613



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +IE A  L S +L  G  P+VV   TL  G  +  +++RAF LF  M++ G+  D   Y+
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             IDG  K G +    +LF        +LD+  +S  ID   KSG L  A  ++  +   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +  +VVTY+I+I GL  DG++ +A  ++  + +  + P+++T+ +LI GF +       
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSG 445

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             L   M +    PD  I  ++VD L+K  + L+++
Sbjct: 446 FALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAM 481



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 5/237 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF-IGLFEIHQVERAFKLFDEMQRD 60
           LI+G+C+    + AL ++  M   GIKPDV    T+  + + E  ++E A  LF  M + 
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIME-GRLEEALFLFFRMFKM 560

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   ID  CK+      ++LF  ++  K   DI   + +I  L K  R+E A
Sbjct: 561 GLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDA 620

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F++L  G +  D+VTY+ MI G  +  ++D+A  +F  ++     PN +T   LIH 
Sbjct: 621 SKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHV 680

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
             + N+    I +   M EK   P+A     ++D  +K   S++   SF + E  +E
Sbjct: 681 LCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSK---SVDIEGSFKLFEEMQE 734



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G  K   +  A+    +ML + I+ +VV+ N+L  G   +++ + A K+F  M   
Sbjct: 466 VLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIY 525

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+T  +      G + E++ LF  +  +  E D  AY  LID  CK  +  I 
Sbjct: 526 GIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIG 585

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  + R  + AD+   +++IH L+   +++ A   F ++ E  + P+++T+ T+I G
Sbjct: 586 LQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICG 645

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +    R++E  ++ ELL   K     P+   ++I++ +L KN
Sbjct: 646 YCSLRRLDEAERIFELL---KVTPFGPNTVTLTILIHVLCKN 684



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CKN +++GA+ ++S M  KG KP+ V +  L     +   +E +FKLF+EMQ  
Sbjct: 676 ILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEK 735

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EI 119
           G++    +Y+I IDGLCK G + E+  +F      K   D+ AY+ LI G CK GRL E 
Sbjct: 736 GISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEA 795

Query: 120 ALELFHSLPRGVLVADVVTYSI 141
           AL   H L  GV   D++  ++
Sbjct: 796 ALLYEHMLRNGVKPDDLLQRAL 817



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 101/208 (48%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
            +E AL L+  M   G++PD + + TL     +  +     +LFD MQR+ ++AD     
Sbjct: 546 RLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCN 605

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           + I  L K   I ++ + F  L   K E DI  Y+ +I G C   RL+ A  +F  L   
Sbjct: 606 VVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVT 665

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               + VT +I+IH L  +  MD A  +F  M E    PN +T+G L+  F +  +    
Sbjct: 666 PFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGS 725

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +L  +M+EK + P     SI++D L K
Sbjct: 726 FKLFEEMQEKGISPSIVSYSIIIDGLCK 753



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 101/198 (51%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K   IE A   ++ ++   ++PD+V +NT+  G   + +++ A ++F+ ++      +T 
Sbjct: 613 KCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTV 672

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           T TI I  LCKN  +  ++ +F  +     + +   Y CL+D   KS  +E + +LF  +
Sbjct: 673 TLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEM 732

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +   +V+YSI+I GL   G++D+A ++F    +  + P+V+ +  LI G+ ++   
Sbjct: 733 QEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRL 792

Query: 188 SKVIELLHKMKEKNVMPD 205
            +   L   M    V PD
Sbjct: 793 VEAALLYEHMLRNGVKPD 810



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 100/212 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK+ +    L L+  M    I  D+ + N +   LF+ H++E A K F+ +    
Sbjct: 572 LIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGK 631

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   I G C    + E+  +F  L++     +    + LI  LCK+  ++ A+
Sbjct: 632 MEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAI 691

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  +       + VTY  ++        ++ +  LF +M+E  ++P+++++  +I G 
Sbjct: 692 RMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGL 751

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            +     +   + H+  +  ++PD    +I++
Sbjct: 752 CKRGRVDEATNIFHQAIDAKLLPDVVAYAILI 783


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE--------------IHQ- 46
           LING+CK  E++ A  L+  M  +GI PD++ ++TL  G F+              +H+ 
Sbjct: 184 LINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKG 243

Query: 47  --------------------VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                               +  AF ++  M   G++ +  TYTI I GLC++G I E+ 
Sbjct: 244 VKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF 303

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++  +     E  +  YS LIDG CK G L     L+  + +     DVV Y +++ GL
Sbjct: 304 GIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 363

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M  A    +     ++ PNV+ F +LI G+ R+N   + +++   M    + PD 
Sbjct: 364 CKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDV 423

Query: 207 SIVSIVV 213
           + ++ ++
Sbjct: 424 ATITTLM 430



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C++  I  A  +Y ++L +G++P VV +++L  G  +   +   F L+++M + 
Sbjct: 288 ILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKM 347

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y + +DGLCK G ++ ++             ++  ++ LIDG C+  R + A
Sbjct: 348 GYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEA 407

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  DV T + ++     +G++ +   LF  M +  + P+ + F TL+  
Sbjct: 408 LKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDA 467

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           F +  +P+  ++L   M+   +  D ++ ++V++LL K +
Sbjct: 468 FCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQ 507



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 1/228 (0%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +IE A  + S +L  G  P+VV   TL  G  +  +++RAF+LF  M++ G+A D   Y+
Sbjct: 158 QIEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYS 217

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             IDG  K G +    +LF        +LD+  +S  ID   K G L  A +++  +   
Sbjct: 218 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQ 277

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +  +VVTY+I+I GL  DG++ +A  ++  + +  + P+V+T+ +LI GF +       
Sbjct: 278 GISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSG 337

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
             L   M +    PD  I  ++VD L K  + L++L  F+V    + +
Sbjct: 338 FALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHAL-RFSVKTLGQSI 384



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G CK   +  AL    + L + I+P+VV+ N+L  G   +++ + A K+F  M   
Sbjct: 358 VLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIY 417

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T T  +      G + E + LF  +  +  E D  A+  L+D  CK+ +  I 
Sbjct: 418 GIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIG 477

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  + R  + AD+   +++I+ L+    +++A   F ++ E  + P+++T+ T+I G
Sbjct: 478 LQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICG 537

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +    R++E +++ E+L   K     P+A  ++I++  L KN 
Sbjct: 538 YCSLRRLDEAARIFEML---KFTPFGPNAVTLTILIHTLCKNS 577



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 8/170 (4%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN   K + +E A   ++ +L   ++PD+V +NT+  G   + +++ A ++F+ ++  
Sbjct: 498 VVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKFT 557

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T TI I  LCKN       ++   LRI+   +   +    IDGLCK GR++ A
Sbjct: 558 PFGPNAVTLTILIHTLCKNS------DMDGALRIISPSIISYSII--IDGLCKRGRVDEA 609

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
             +FH      ++ DVV Y+I+I G    G++ +A  L+  M  N V P+
Sbjct: 610 TNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKPD 659



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 27/222 (12%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
            ++  L L+  M   G++PD V   TL     +  +     +LFD MQR+ + AD     
Sbjct: 438 RLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCN 497

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
           + I+ L K   + E+ + F  L   K E DI  Y+ +I G C   RL+ A  +F  L   
Sbjct: 498 VVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKFT 557

Query: 131 VLVADVVTYSIMIH---------------------------GLYNDGQMDKAHDLFLDME 163
               + VT +I+IH                           GL   G++D+A ++F    
Sbjct: 558 PFGPNAVTLTILIHTLCKNSDMDGALRIISPSIISYSIIIDGLCKRGRVDEATNIFHQAI 617

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +  + P+V+ +  LI G  ++    +   L   M    V PD
Sbjct: 618 DAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKPD 659


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C+    + AL ++  M+ +G+ PD V ++TL  GLF++   E A  L+ ++   G
Sbjct: 443 LLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARG 502

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 T+   I GLCK G +VE+ E+F  ++ L C  D   Y  LIDG CK+  +  A 
Sbjct: 503 FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF 562

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++  ++ R  +   +  Y+ +I GL+   ++ +  DL  +M    + PN++T+G LI G+
Sbjct: 563 KVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGW 622

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     K      +M E  +  +  I S +V  L +
Sbjct: 623 CKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 659



 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  +I+ A+ L  EML  G+K ++ I N+L  G  +  ++  A  +   M   
Sbjct: 337 VLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDW 396

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D+ +Y   +DG C+ G+  E+  L   +     E  +  Y+ L+ GLC+ G  + A
Sbjct: 397 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 456

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+++H + +  +  D V YS ++ GL+     + A  L+ D+       + ITF T+I G
Sbjct: 457 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             ++ +  +  E+  KMK+    PD      ++D   K
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCK 554



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 1/215 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I G CK  +++ A   +S +  KG  PD   + TL  G      V+ AF+L DEM R 
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRR 778

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   I+GLCK+  +  +  LF  L       ++  Y+ LIDG CK G ++ A
Sbjct: 779 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAA 838

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    +   VVTYS +I+GL   G ++++  L   M +  V   +I + TL+ G
Sbjct: 839 FKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215
           +IR  E  K I  L+ M     +   +I    VDL
Sbjct: 899 YIRSGEMQK-IHKLYDMMHIRCLSTTAISHKQVDL 932



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K +  EGA  L+ ++L++G     +  NT+  GL ++ ++  A ++FD+M+  G
Sbjct: 478 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + D  TY   IDG CK   + ++ ++   +        I+ Y+ LI GL KS RL    
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVT 597

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  ++VTY  +I G   +G +DKA   + +M EN ++ N+I   T++ G 
Sbjct: 598 DLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGL 657

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R+    +   L+ KM +    PD
Sbjct: 658 YRLGRIDEANLLMQKMVDHGFFPD 681



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK  EI  A  + + M+   +KPD   +NTL  G         AF L D+M ++G
Sbjct: 373 LINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEG 432

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   + GLC+ G   ++++++  +       D   YS L+DGL K    E A 
Sbjct: 433 IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGAS 492

Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L+   L RG      +T++ MI GL   G+M +A ++F  M++   +P+ IT+ TLI G
Sbjct: 493 TLWKDILARG-FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDG 551

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           + + +   +  ++   M+ + + P   + + ++  L K+ 
Sbjct: 552 YCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 591



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 32/250 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK   ++ A + Y EM   G+  +++I +T+  GL+ + +++ A  L  +M   G
Sbjct: 618 LIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHG 677

Query: 62  --------VAADTR------------------------TYTIFIDGLCKNGYIVESVELF 89
                   + +D R                         Y I I GLCK G + ++   F
Sbjct: 678 FFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF 737

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
             L +     D   Y  LI G   +G ++ A  L   + R  LV ++VTY+ +I+GL   
Sbjct: 738 SMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKS 797

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
             +D+A  LF  + +  + PNV+T+ TLI G+ +I       +L  KM E+ + P     
Sbjct: 798 ENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTY 857

Query: 210 SIVVDLLAKN 219
           S +++ L K+
Sbjct: 858 SALINGLCKH 867



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGY    ++E A  +   M  KG+  +VV +  L  G  +  +++ A K+   MQ + 
Sbjct: 267 LINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA 326

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D R Y + IDG C+ G I ++V L   +  L  + ++   + LI+G CK G +  A
Sbjct: 327 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 386

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +    L  D  +Y+ ++ G   +G   +A +L   M +  + P V+T+ TL+ G
Sbjct: 387 EGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 446

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             R+      +++ H M ++ V PD    S ++D L K E
Sbjct: 447 LCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 486



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 109/228 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++GYC+      A NL  +ML +GI+P V+ +NTL  GL  +   + A +++  M + G
Sbjct: 408 LLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 467

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D   Y+  +DGL K      +  L++ +           ++ +I GLCK G++  A 
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAE 527

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+F  +       D +TY  +I G      + +A  +   ME   ++P++  + +LI G 
Sbjct: 528 EIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGL 587

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +     +V +LL +M  + + P+      ++D   K  +   +  S+
Sbjct: 588 FKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSY 635



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 32/251 (12%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   +  A  +   M  + I P + ++N+L  GLF+  ++     L  EM   G
Sbjct: 548 LIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRG 607

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY   IDG CK G + ++   +  +       +I   S ++ GL + GR++ A 
Sbjct: 608 LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEAN 667

Query: 122 ELFHSL--------------------------------PRGVLVADVVTYSIMIHGLYND 149
            L   +                                 +  L+ + + Y+I I GL   
Sbjct: 668 LLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 727

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G++D A   F  +      P+  T+ TLIHG+       +   L  +M  + ++P+    
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 787

Query: 210 SIVVDLLAKNE 220
           + +++ L K+E
Sbjct: 788 NALINGLCKSE 798



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 1/193 (0%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           Y +    + AL ++  M   G  P +   N+L   L +  +   A  ++ +M R G+  D
Sbjct: 166 YVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPD 225

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
               +I ++  CK+G + E+    + +  L  E +I  Y  LI+G    G +E A  +  
Sbjct: 226 VFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLK 285

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRI 184
            +    +  +VVTY+++I G     +MD+A  +   M EE A+ P+   +G LI G+ R 
Sbjct: 286 FMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRT 345

Query: 185 NEPSKVIELLHKM 197
            +    + LL +M
Sbjct: 346 GKIDDAVRLLDEM 358



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 47  VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
            + A  +FD M + G     R+    ++ L KNG    +  +++ +  +    D+   S 
Sbjct: 172 TKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSI 231

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +++  CK G+++ A      +    +  ++VTY  +I+G  + G ++ A  +   M E  
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 291

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM-PDASIVSIVVD 214
           V+ NV+T+  LI G+ +  +  +  ++L  M+E+  + PD     +++D
Sbjct: 292 VSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLID 340


>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 369

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK  ++E A+++ + M+  G KP+  ++N L  GL    + E A ++F EM    
Sbjct: 135 MINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY I I+GLCK+    E+ +L + +        +  YS L+ GLC   ++E+AL
Sbjct: 195 CSPTIVTYNILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ + +     DV  ++ +IHGL + G+   A  L+LDM     APN++T  TL+ GF
Sbjct: 255 QLWNQVTKNGFKPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYWNCAPNLVTQNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++ +  + PD    +I +  L + N IS
Sbjct: 315 YKDGDMRNALVIWARILKNELQPDIISYNITLKGLCSCNRIS 356



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 34/245 (13%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG---VA 63
           C++ +I+GA  +Y +++   + PD V++N +  G +   +++  F+L++ M R+G   VA
Sbjct: 1   CESGDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGREGNRSVA 60

Query: 64  A-------------------------------DTRTYTIFIDGLCKNGYIVESVELFRTL 92
           +                               D+ TY I + G CKNGYI +S+ +  T 
Sbjct: 61  SFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLETA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 LD  AYS +I+GLCK  +LE A+ + + + +     +   Y+ +I+GL    + 
Sbjct: 121 ERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKS 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M     +P ++T+  LI+G  +     +  +L+ +M EK + P     S++
Sbjct: 181 EDAIRVFREMGITHCSPTIVTYNILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLL 240

Query: 213 VDLLA 217
           +  L 
Sbjct: 241 MKGLC 245



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G+CKN  I  +L +      KG   D   ++ +  GL +  ++E+A  + + M + 
Sbjct: 99  ILVHGFCKNGYINKSLRVLETAERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKS 158

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +T  Y   I+GL       +++ +FR + I  C   I  Y+ LI+GLCKS R   A
Sbjct: 159 GCKPNTHVYNALINGLIGASKSEDAIRVFREMGITHCSPTIVTYNILINGLCKSERFGEA 218

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   +    L   V+TYS+++ GL    +++ A  L+  + +N   P+V    TLIHG
Sbjct: 219 YDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTLIHG 278

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
              + +    + L   M   N  P+
Sbjct: 279 LCSVGKTQLALSLYLDMNYWNCAPN 303



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 81/146 (55%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING CK++    A +L  EML KG+ P V+ ++ L  GL   H++E A +L++++ ++
Sbjct: 204 ILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKN 263

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D + +   I GLC  G    ++ L+  +    C  ++   + L++G  K G +  A
Sbjct: 264 GFKPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYWNCAPNLVTQNTLMEGFYKDGDMRNA 323

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGL 146
           L ++  + +  L  D+++Y+I + GL
Sbjct: 324 LVIWARILKNELQPDIISYNITLKGL 349



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C   +IE AL L++++   G KPDV +HNTL  GL  + + + A  L+ +M   
Sbjct: 239 LLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLE 118
             A +  T    ++G  K+G +  ++ ++   RILK EL  DI +Y+  + GLC   R+ 
Sbjct: 299 NCAPNLVTQNTLMEGFYKDGDMRNALVIWA--RILKNELQPDIISYNITLKGLCSCNRIS 356

Query: 119 IALELFHSLPR 129
            A+   +   R
Sbjct: 357 DAILFLNDAVR 367



 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
           C+SG ++ A  ++  +    +  D V Y+ M++G Y  G++    +L+ +M       +V
Sbjct: 1   CESGDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELW-EMMGREGNRSV 59

Query: 172 ITFGTLIHGFI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
            +F  ++ G     R++E + + EL   MK+   + D+    I+V    KN     SL  
Sbjct: 60  ASFNIMMRGLFDNGRVDEVNSIWEL---MKKGGYVEDSITYGILVHGFCKNGYINKSLRV 116

Query: 229 FTVHERQEEV 238
               ER+  V
Sbjct: 117 LETAERKGGV 126


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 117/213 (54%), Gaps = 1/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           LING+C+  E++   +L  E+LSK  + PDVV + ++  G  ++ ++E+A  LF+ M   
Sbjct: 278 LINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISS 337

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+ I I+G  K G +V +  ++  + +L C  DI  ++ LIDG C++G++E +
Sbjct: 338 GIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERS 397

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L+H L    L  +  T++I+ + L  + ++ +A     D++   +      +  +I G
Sbjct: 398 LKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDG 457

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           F +     +   +L +M+EK   PD    +I++
Sbjct: 458 FCKAGNVDEANVILAEMEEKRCKPDKITYTILI 490



 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 107/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK  ++E A  L++ M+S GIKP+    N L  G  ++  +  A  +++EM   G
Sbjct: 314 IISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  IDG C+ G +  S++L+  L       +   ++ L + LCK  RL  A 
Sbjct: 374 CPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEAR 433

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                L    +VA    Y+ +I G    G +D+A+ +  +MEE    P+ IT+  LI G 
Sbjct: 434 GFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGH 493

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                 S+ I + ++M      PD+  ++ ++  L K
Sbjct: 494 CMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLK 530



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+N   +  +++ A+  + E +      D    N L  GL  I +V++AF+LF+EM+  G
Sbjct: 208 LLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFG 267

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
            + D  TY   I+G C+   +    +L + L + K +L  D+  Y+ +I G CK G++E 
Sbjct: 268 CSPDVITYNTLINGFCRVNEVDRGHDLLKEL-LSKNDLSPDVVTYTSIISGYCKLGKMEK 326

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  LF+++    +  +  T++I+I+G    G M  A +++ +M      P++ITF +LI 
Sbjct: 327 ASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLID 386

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  R  +  + ++L H++  +N+ P+    +I+ + L K
Sbjct: 387 GHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCK 425



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 15/251 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+ K  ++  A N+Y EML  G  PD++   +L  G     +VER+ KL+ E+   
Sbjct: 348 ILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNAR 407

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ +  T+ I  + LCK   + E+    R L+          Y+ +IDG CK+G ++ A
Sbjct: 408 NLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEA 467

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D +TY+I+I G    G++ +A  +F  M     AP+ IT  +LI  
Sbjct: 468 NVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISC 527

Query: 181 FIRINEPSKVIELLHKMKE---------KNVMPDASIVSI------VVDLLAKNEISLNS 225
            ++   P++   ++    E         K  +P  +   I       VD L  +   L S
Sbjct: 528 LLKAGMPNEAYRIMQIASEDFNLGLKSLKRNVPLRTNTDIPVAFMSTVDGLTNHFPGLAS 587

Query: 226 LPSFTVHERQE 236
           +P  T +E Q 
Sbjct: 588 MPLATCNEGQS 598



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 1/190 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G++  +V++N L   L   +QV+ A   F E        D+ ++ I I GLC+ G + ++
Sbjct: 197 GVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKA 256

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIH 144
            ELF  +R   C  D+  Y+ LI+G C+   ++   +L    L +  L  DVVTY+ +I 
Sbjct: 257 FELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIIS 316

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G    G+M+KA  LF +M  + + PN  TF  LI+GF ++ +      +  +M      P
Sbjct: 317 GYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPP 376

Query: 205 DASIVSIVVD 214
           D    + ++D
Sbjct: 377 DIITFTSLID 386



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           DGV      Y   ++ L +   + E+V  FR    L    D  +++ LI GLC+ G+++ 
Sbjct: 196 DGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDK 255

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-MEENAVAPNVITFGTLI 178
           A ELF+ +       DV+TY+ +I+G     ++D+ HDL  + + +N ++P+V+T+ ++I
Sbjct: 256 AFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSII 315

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            G+ ++ +  K   L + M    + P+A   +I+++   K
Sbjct: 316 SGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGK 355


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   CK KE E A    + M  +G KPDV  ++T+   L +  +++ A +LFDEM   
Sbjct: 154 VLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSER 213

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            VA D   Y I IDG  K      +++L+ + L       +++ ++ +I GL K GR++ 
Sbjct: 214 RVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDD 273

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
            L+++  + +     D+ TYS +IHGL ++G +DKA  +F ++ E     +V+T+ T++ 
Sbjct: 274 CLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLG 333

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           GF R  +  + +EL   M+++N +   S   ++  LL   +I
Sbjct: 334 GFCRCGKIKESLELWRIMEQRNSVNIVSYNILIKGLLENGKI 375



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 109/204 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  CK + +E A NL  EM   G++ +  + N L  GL    ++  A  L   M ++G
Sbjct: 435 IIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNG 494

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 +Y I I GLC+ G   E+    + +     + D++ YS L+ GLC+  ++E+AL
Sbjct: 495 CLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELAL 554

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL+H   +  L  DV+ ++I+IHGL + G++D A  +  +ME      N++T+ TL+ G+
Sbjct: 555 ELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGY 614

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            ++ + ++   +   M +  + PD
Sbjct: 615 FKVRDSNRATVIWGYMYKMGLQPD 638



 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 111/219 (50%), Gaps = 1/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G+C+  +I+ +L L+  M  +    ++V +N L  GL E  +++ A  ++  M   G
Sbjct: 331 MLGGFCRCGKIKESLELWRIMEQRN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKG 389

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            AAD  TY IFI GLC NGY+ +++ + + +      LD+ AY+ +ID LCK  RLE A 
Sbjct: 390 YAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEAS 449

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +  +  +    + +I GL  D ++  A  L   M +N   P V+++  LI G 
Sbjct: 450 NLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGL 509

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               +  +    + +M E  + PD    SI++  L ++ 
Sbjct: 510 CEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDR 548



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 103/212 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G  ++  +  A  L   M   G  P VV +N L  GL E  +   A     EM  +G
Sbjct: 470 LIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENG 529

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D +TY+I + GLC++  I  ++EL+        E D+  ++ LI GLC  G+L+ A+
Sbjct: 530 LKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAM 589

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  ++      A++VTY+ ++ G +     ++A  ++  M +  + P++I++ T++ G 
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGL 649

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              +  S  IE     +   + P     +I+V
Sbjct: 650 CLCHRVSYAIEFFDDARNHGIFPTVYTWNILV 681



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 78/148 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+ G C++++IE AL L+ + L  G++PDV++HN L  GL  + +++ A  +   M+  
Sbjct: 539 ILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHR 598

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
              A+  TY   ++G  K      +  ++  +  +  + DI +Y+ ++ GLC   R+  A
Sbjct: 599 NCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYA 658

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYN 148
           +E F       +   V T++I++  + N
Sbjct: 659 IEFFDDARNHGIFPTVYTWNILVRAVVN 686



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 88/182 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C+  +   A     EML  G+KPD+  ++ L  GL    ++E A +L+ +  + 
Sbjct: 504 ILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQS 563

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   + I I GLC  G + +++ +   +    C  ++  Y+ L++G  K      A
Sbjct: 564 GLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRA 623

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             ++  + +  L  D+++Y+ ++ GL    ++  A + F D   + + P V T+  L+  
Sbjct: 624 TVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRA 683

Query: 181 FI 182
            +
Sbjct: 684 VV 685



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 48  ERAFKLFDEMQR-DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106
           +RA  +F  M+   G     R+Y   ++   +    V+   LF          ++Q Y+ 
Sbjct: 95  DRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           LI   CK    E A    + + +     DV +YS +I+ L   G++D A +LF +M E  
Sbjct: 155 LIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERR 214

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAK 218
           VAP+V  +  LI GF++  +    ++L  K+ E  +V P+    +I++  L+K
Sbjct: 215 VAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSK 267



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 86/196 (43%), Gaps = 1/196 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G     V+++ +   L E   V    ++ + ++      D       I    KN     +
Sbjct: 38  GYAHSAVVYHHILRRLSEARMVTHVGRIVELIRSQECKCDEDVALSVIKTYGKNSMPDRA 97

Query: 86  VELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           +++F+ +R I  CE  I++Y+ L++   ++ +      LF       +  ++ TY+++I 
Sbjct: 98  LDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIK 157

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
                 + +KA      M +    P+V ++ T+I+   +  +    +EL  +M E+ V P
Sbjct: 158 MSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAP 217

Query: 205 DASIVSIVVDLLAKNE 220
           D +  +I++D   K +
Sbjct: 218 DVTCYNILIDGFLKEK 233


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+GYC+  ++   L L  EM  KGI P VV +  +   L     + +   L  EM+  
Sbjct: 316 VLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKER 375

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ + + Y   I  LCK     +++ +   +   + + D+  ++ LI   C+ G +E A
Sbjct: 376 GLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEA 435

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L     R  L  + ++Y+ +IHG    G++  A DL ++M      P+V+T G LIHG
Sbjct: 436 LKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHG 495

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +   +  + + +  KM E+ VMPDA+I ++++  L K  +
Sbjct: 496 LVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRM 536



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 106/216 (49%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK + +  A NL  EML + ++PD  ++ TL  G     ++  A K+F+ M+  
Sbjct: 526 VLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEK 585

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y   I G CK+G + E+V    ++R + C  D   Y+ LIDG  K G ++ A
Sbjct: 586 GGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAA 645

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     + +     ++VTY+ +I G  N G  D A  LF  M+   + PNV+ +  LI  
Sbjct: 646 LRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGS 705

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             + ++  +       M   +  P+ + +  +V+ L
Sbjct: 706 LFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGL 741



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 107/228 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G   + +++ AL +  +M  + + PD  I+N L  GL +   +  A  L  EM    
Sbjct: 492 LIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQK 551

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   YT  IDG  ++  + ++ ++F  +       DI AY+ +I G CKSG +  A+
Sbjct: 552 VQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAV 611

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
               S+ +   + D  TY+ +I G    G +  A     DM +    PN++T+ +LI G+
Sbjct: 612 MCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGY 671

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
             I        L   M+ + + P+    ++++  L K + ++ +   F
Sbjct: 672 CNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYF 719



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 95/204 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+C   E+  A +L  EM+ +G  PDVV    L  GL    QV+ A  + ++M    
Sbjct: 457 LIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQ 516

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D   Y + I GLCK   +  +  L   +   K + D   Y+ LIDG  +S +L  A 
Sbjct: 517 VMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDAR 576

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +       D+V Y+ MI G    G M++A      M +    P+  T+ TLI G+
Sbjct: 577 KIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGY 636

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +    +  L  M ++   P+
Sbjct: 637 AKKGDIKAALRFLCDMMKRRCKPN 660



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 95/198 (47%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           +L  EM  +G+ P+V I+NT+   L +     +A  + ++M       D  T+   I   
Sbjct: 367 SLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAF 426

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
           C+ G + E+++L R     + E +  +Y+ LI G C  G + +A +L   +       DV
Sbjct: 427 CREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDV 486

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196
           VT   +IHGL   GQ+D+A  +   M E  V P+   +  LI G  +    S    LL +
Sbjct: 487 VTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVE 546

Query: 197 MKEKNVMPDASIVSIVVD 214
           M E+ V PD  + + ++D
Sbjct: 547 MLEQKVQPDKFVYTTLID 564



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 15/203 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GY K  +I+ AL    +M+ +  KP++V + +L  G   I   + A  LF  MQ +G
Sbjct: 632 LIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEG 691

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL--CKSG---- 115
           +  +   YT+ I  L K    +++   F  + +  C  +      L++GL  C+ G    
Sbjct: 692 LFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINS 751

Query: 116 ---------RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
                    +    L++F  L    L   +  Y+ +I  L     + KA +L   M    
Sbjct: 752 NCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKG 811

Query: 167 VAPNVITFGTLIHGFIRINEPSK 189
             P+ +TF +L++GF  + +  K
Sbjct: 812 CLPDPVTFLSLLYGFSSVGKSGK 834



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 87/219 (39%), Gaps = 15/219 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYCK+  +  A+   S M   G  PD   + TL  G  +   ++ A +   +M +  
Sbjct: 597 MIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRR 656

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY   I G C  G    +  LF +++      ++  Y+ LI  L K  +   A 
Sbjct: 657 CKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAA 716

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY---------NDGQMDKAH------DLFLDMEENA 166
             F  +       +  T   +++GL          N    D+AH      D+F  +  + 
Sbjct: 717 AYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDG 776

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           + P +  +  +I    R N   K +EL  KM  K  +PD
Sbjct: 777 LDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPD 815


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 4/217 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK + I  A+  +  M     +PDVV +NTL  GL +  +V +A  LF  M+  
Sbjct: 50  VVIDTLCKARRISRAIEFFETM----PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGA 105

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT  ID  CK      +  L + +   KC   + +Y  +I+GLCK+ +++ A
Sbjct: 106 GITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQA 165

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +       D VTY+ +IHGL    ++ +A DL   M EN+  P+ ITF  LI G
Sbjct: 166 YQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEG 225

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
               +   +   L   M ++   PD    +++V  L 
Sbjct: 226 LCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLC 262



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 2/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CKN++++ A  L+ EM   G KPD V +NTL  GL    ++  A  L   M  + 
Sbjct: 152 IINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENS 211

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I+GLC    I E+  LF+ +    C  D+  ++ L+  LC   +L  AL
Sbjct: 212 FQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPAL 271

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  + P       V+ Y+ +   L      D+A  L   M    VAPNV+T+     G 
Sbjct: 272 SVVRNYP--ACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGL 329

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
               E  +      +M E+ + PD    +++VD   K
Sbjct: 330 GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCK 366



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C+  +I+ A +  +EM  + + PDV  +N +   L +  ++ RA + F+ M    
Sbjct: 16  LVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE-- 73

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   + GLCKNG + ++  LF ++           Y+ LID  CK  + E A 
Sbjct: 74  --PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAY 131

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +        V +Y  +I+GL  + ++D+A+ LF +M+     P+ +T+ TLIHG 
Sbjct: 132 GLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGL 191

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                  +  +LL  M E +  PD    + +++ L   +
Sbjct: 192 CVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTD 230



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 4/184 (2%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           + S+  KP+ + +  L   L    ++++A     EM R+ +  D  TY + ID LCK   
Sbjct: 1   IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           I  ++E F T+     E D+  Y+ L+ GLCK+GR+  A  LF S+    +    VTY+ 
Sbjct: 61  ISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTT 116

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I       Q + A+ L   M     +P V ++ ++I+G  +  +  +  +L  +MK   
Sbjct: 117 LIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAG 176

Query: 202 VMPD 205
             PD
Sbjct: 177 CKPD 180



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 39/221 (17%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
           LI G C    I+ A  L+  M  +G  PD+V H  L                        
Sbjct: 222 LIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACP 281

Query: 38  ---------FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
                    F  L      +RA +L  +M R GVA +  TYT F  GL   G   E +  
Sbjct: 282 EAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGL---GDWKEGMRA 338

Query: 89  FRTLRIL---KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           +R  R +     E D+ AY+ L+DG CK+ RL++A ++   + +  L  ++VTY+ ++  
Sbjct: 339 YREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGH 398

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
               G+++   +L   M      P+V T+ TL+ G  R+ +
Sbjct: 399 HCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQ 439



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + +  + A  L  +M  +G+ P+VV +   F GL +  +  RA++ F  M   G+  D  
Sbjct: 296 RRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMV 355

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            Y + +DG CK   +  + ++ R +       +I  Y+ L+   C+ G++E   EL H++
Sbjct: 356 AYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTM 415

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
                  DV T+S ++ GL+  GQ+D A+  FL++
Sbjct: 416 VSRGRQPDVATWSTLVAGLFRVGQVDAAYS-FLNL 449



 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  +C+  ++E    L   M+S+G +PDV   +TL  GLF + QV+ A+   +     G
Sbjct: 395 LVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFLNLAMSQG 454


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ GYC   +I  AL LY EM  KGI P +    TL  GLF    +  A KLF+EM    
Sbjct: 478 LMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWN 537

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY + I+G C+ G + ++ E  + +       D  +Y  LI GLC +G+   A 
Sbjct: 538 VKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAK 597

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                L +G    + + Y+ ++HG   +G++++A  +  +M +  V  +++ +G LI G 
Sbjct: 598 VFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGS 657

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           ++  +      LL +M ++ + PD  I + ++D  +K 
Sbjct: 658 LKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKT 695



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 107/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING+CK  +I  A    +EM++K ++P VV + +L  G     ++ +A +L+ EM   G
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A    T+T  + GL + G I ++V+LF  +     + +   Y+ +I+G C+ G +  A 
Sbjct: 503 IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAF 562

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E    +    +V D  +Y  +IHGL   GQ  +A      + +     N I +  L+HGF
Sbjct: 563 EFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGF 622

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R  +  + + +  +M ++ V  D     +++D
Sbjct: 623 CREGKLEEALSVCQEMVQRGVDLDLVCYGVLID 655



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 110/213 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K  +IE ALNL   ++  G+ P++ ++N L   L +  +   A  LFD M + G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TY+I ID  C+ G +  ++     +     +L +  Y+ LI+G CK G +  A 
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                +    L   VVTY+ ++ G  + G+++KA  L+ +M    +AP++ TF TL+ G 
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R       ++L ++M E NV P+    +++++
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 35/240 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G  K+K+ +    L  EM  +G+KPD VI+ ++     +    + AF ++D M  +
Sbjct: 652 VLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINE 711

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-----------------ILKCELDIQ- 102
           G   +  TYT  I+GLCK G++ E+  L   ++                 + K E+D+Q 
Sbjct: 712 GCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQK 771

Query: 103 -----------------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                             Y+ LI G C+ GR+E A EL   +    +  D +TY+ MI+ 
Sbjct: 772 AVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINE 831

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L     + KA +L+  M E  + P+ + + TLIHG     E  K  EL ++M  + ++P+
Sbjct: 832 LCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 99/199 (49%), Gaps = 3/199 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+ +C+  +++ AL+   EM+  G+K  V  +N+L  G  +   +  A     EM   
Sbjct: 407 ILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINK 466

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TYT  + G C  G I +++ L+  +        I  ++ L+ GL ++G +  A
Sbjct: 467 KLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDA 526

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++LF+ +    +  + VTY++MI G   +G M KA +   +M E  + P+  ++  LIHG
Sbjct: 527 VKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHG 586

Query: 181 FIRINEPSKV---IELLHK 196
                + S+    ++ LHK
Sbjct: 587 LCLTGQASEAKVFVDGLHK 605



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 96/224 (42%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I GYC+  ++  A     EM  KGI PD   +  L  GL    Q   A    D + + 
Sbjct: 547 VMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG 606

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +   YT  + G C+ G + E++ + + +     +LD+  Y  LIDG  K    ++ 
Sbjct: 607 NCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLF 666

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   +    L  D V Y+ MI      G   +A  ++  M      PN +T+  +I+G
Sbjct: 667 FGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVING 726

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
             +    ++   L  KM+  + +P+       +D+L K E+ + 
Sbjct: 727 LCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQ 770



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C+  ++E AL++  EM+ +G+  D+V +  L  G  +    +  F L  EM   G
Sbjct: 618 LLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRG 677

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   YT  ID   K G   E+  ++  +    C  +   Y+ +I+GLCK+G +  A 
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD--KAHDLFLDMEENAVAPNVITFGTLIH 179
            L   +     V + VTY   +  +   G++D  KA +L   + +  +A N  T+  LI 
Sbjct: 738 VLCSKMQPVSSVPNQVTYGCFLD-ILTKGEVDMQKAVELHNAILKGLLA-NTATYNMLIR 795

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEI 221
           GF R     +  EL+ +M    V PD  +  +++ +L  +N++
Sbjct: 796 GFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 108/221 (48%), Gaps = 1/221 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI  Y +++ +   + ++  M++K  + P+V   + L  GL +      A +LF++M  
Sbjct: 161 LLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVS 220

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  D   YT  I  LC+   +  + E+   +    C+++I  Y+ LIDGLCK  ++  
Sbjct: 221 VGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWE 280

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ +   L    L  DVVTY  +++GL    + +   ++  +M     +P+     +L+ 
Sbjct: 281 AVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVE 340

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           G  +  +  + + L+ ++ +  V P+  + + ++D L K  
Sbjct: 341 GLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGR 381



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 89/196 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   C+ K++  A  + + M + G   ++V +N L  GL +  +V  A  +  ++    
Sbjct: 233 VIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKD 292

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY   + GLCK       +E+   +  L+      A S L++GL K G++E AL
Sbjct: 293 LKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEAL 352

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  ++  Y+ +I  L    +  +A  LF  M +  + PN +T+  LI  F
Sbjct: 353 NLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMF 412

Query: 182 IRINEPSKVIELLHKM 197
            R  +    +  L +M
Sbjct: 413 CRRGKLDTALSFLGEM 428



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN  C+  +++ A+ L++ M  KGI+PD V +NTL  G     ++ +A +L +EM R G
Sbjct: 828 MINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQG 887

Query: 62  VAADTRT 68
           +  + +T
Sbjct: 888 LIPNNKT 894


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 110/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G CK  ++  A  L   M   GI PDV  +     GL +  +++ A ++F+EM   G
Sbjct: 155 LMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERG 214

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +T   T  ID  CK G +   +EL   +     + D+ AY+ L++G C+   ++ A 
Sbjct: 215 LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAAN 274

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  L  D VTY+ +I G   +G++D A ++  +M +  VA + +T+  LI G 
Sbjct: 275 DIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGL 334

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +         +L +M E  + PD +  ++V+D   KN
Sbjct: 335 SKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKN 372



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 117/225 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+    ++ ++  A N++ EML +G++P VV  NTL  G+ +   +  A  L   M + 
Sbjct: 119 MLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKA 178

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D  TY  FI GLCK G I +++E+F  +       +    + LID  CK G +   
Sbjct: 179 GIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAG 238

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   +    + AD+V Y+ +++G      M  A+D+  +M ++ + P+ +T+ TLI G
Sbjct: 239 LELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDG 298

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  E    +E+  +M ++ V  D    + ++  L+K   S+++
Sbjct: 299 CCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDA 343



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 107/213 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK  ++   L L  EM ++G+K D+V +N L  G   +  ++ A  + +EM++DG
Sbjct: 225 LIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDG 284

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  ++E+ + +      LD   Y+ LI GL K+GR   A 
Sbjct: 285 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAE 344

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +   +    L  D  TY+++I     +G +        +M+     P ++T+  +++GF
Sbjct: 345 RILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGF 404

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
             + +      LL+ M    V P+    +I++D
Sbjct: 405 CSLGQMKNADMLLNAMLNIGVCPNDITYNILLD 437



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 5/190 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NG+C+ ++++ A ++  EM   G+KPD V + TL  G  +  +++ A ++  EM  +G
Sbjct: 260 LVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEG 319

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA D  TYT  I GL K G  V++  +   +     + D   Y+ +ID  CK+G ++   
Sbjct: 320 VALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGF 379

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI--- 178
           +    +        +VTY+++++G  + GQM  A  L   M    V PN IT+  L+   
Sbjct: 380 KHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGH 439

Query: 179 --HGFIRINE 186
             HG +R  E
Sbjct: 440 CKHGKVRDTE 449



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I G CK   I+ A+ ++ EM  +G+ P+ V+  TL     +   V    +L  EM   G
Sbjct: 190 FIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRG 249

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V AD   Y   ++G C+   +  + ++   +R    + D   Y+ LIDG CK G L+ A+
Sbjct: 250 VKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAM 309

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   +    +  D VTY+ +I GL   G+   A  +  +M E  + P+  T+  +I  F
Sbjct: 310 EMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAF 369

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            +  +     + L +M+ K   P     ++V++
Sbjct: 370 CKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMN 402



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 5/227 (2%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A   Y  +L  G+ P+    N L   +    ++  A  +FDEM R GV     T+   + 
Sbjct: 98  AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 157

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G+CK   +  +  L   +       D+  Y   I GLCK+GR++ A+E+F  +    L  
Sbjct: 158 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 217

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           + V  + +I     +G +    +L  +M    V  +++ +  L++GF R+ +     +++
Sbjct: 218 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIV 277

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
            +M++  + PD    + ++D   K E  L++     +  +QE  DE 
Sbjct: 278 EEMRKDGLKPDKVTYTTLIDGCCK-EGELDT----AMEMKQEMSDEG 319



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           L +GI+  +   + L   +  +  V  A+  +  +   GV  + R + + +  + ++G +
Sbjct: 74  LRRGIRVPMPAWSDL---MNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKL 130

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
             +  +F  +     +  +  ++ L+ G+CK+  L  A  L   + +  +  DV TY   
Sbjct: 131 ASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAF 190

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           I GL   G++  A ++F +M E  + PN +   TLI    +  + +  +EL  +M  + V
Sbjct: 191 IQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGV 250

Query: 203 MPDASIVSIVV-------DLLAKNEI 221
             D    + +V       D+ A N+I
Sbjct: 251 KADLVAYNALVNGFCRVRDMKAANDI 276



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+ +CKN +++       EM +KG  P +V +N +  G   + Q++ A  L + M   
Sbjct: 364 MVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNI 423

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113
           GV  +  TY I +DG CK+G + ++ EL     ++    D   Y+ LI+   K
Sbjct: 424 GVCPNDITYNILLDGHCKHGKVRDTEELKSAKGMVS---DFGVYTSLINEFVK 473


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 112/205 (54%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I+G+CK   ++ A+ ++ EML+KG +KP+ V++N L  G  +  +++ A    D M   
Sbjct: 227 VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVER 286

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GVA    TY + +  L  +G   E+ EL   +      LD+  Y+ LI+G CK G ++ A
Sbjct: 287 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKA 346

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LE+F ++ R  + A VVTY+ +I+ L   GQ+ +   LF +     + P+++ +  LI+ 
Sbjct: 347 LEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 406

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
                   +  E++ +M++K + PD
Sbjct: 407 HSTSGNIDRAFEIMGEMEKKRIAPD 431



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 108/204 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC   +++ AL     M+ +G+   V  +N L   LF   +   A++L +EM   G
Sbjct: 263 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 322

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D  TY I I+G CK G + +++E+F  +        +  Y+ LI  L K G+++   
Sbjct: 323 LALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD 382

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +LF    R  +  D+V Y+ +I+     G +D+A ++  +ME+  +AP+ +T+ TL+ G 
Sbjct: 383 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 442

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
             +    +  +L+ +M ++ + PD
Sbjct: 443 CLLGRVDEARKLIDEMTKRGIQPD 466



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 1/225 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING+CK   ++ AL ++  M  +G++  VV + +L   L +  QV+   KLFDE  R 
Sbjct: 332 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRR 391

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   I+    +G I  + E+   +   +   D   Y+ L+ GLC  GR++ A
Sbjct: 392 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 451

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +L   + +  +  D+VTY+ +I G    G +  A  +  +M      P ++T+  LI G
Sbjct: 452 RKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQG 511

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASI-VSIVVDLLAKNEISLN 224
             +  +      ++ +M E  + PD S  +S++  L  ++E +++
Sbjct: 512 LCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAID 556



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 12/207 (5%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QR 59
           I++   C   +   AL L  +M     +P+ V +NT+  G     +V+ A  +  EM +R
Sbjct: 159 IMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRER 214

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRL 117
            G+A +  TY   I G CK G + E+V++F  + + K E+  +A  Y+ LI G C  G+L
Sbjct: 215 GGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM-LTKGEVKPEAVMYNALIGGYCDQGKL 273

Query: 118 EIALELFHS--LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           + AL L+    + RGV +  V TY++++H L+ DG+  +A++L  +M    +A +V T+ 
Sbjct: 274 DTAL-LYRDRMVERGVAMT-VATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYN 331

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNV 202
            LI+G  +     K +E+   M  + V
Sbjct: 332 ILINGHCKEGNVKKALEIFENMSRRGV 358



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 4/207 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +I G+C    ++ AL++  EM  +G I P+   + T+  G  ++ +V+ A K+FDEM   
Sbjct: 191 VIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK 250

Query: 61  G-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLE 118
           G V  +   Y   I G C  G + ++  L+R   + +   + +  Y+ L+  L   GR  
Sbjct: 251 GEVKPEAVMYNALIGGYCDQGKL-DTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGT 309

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A EL   +    L  DV TY+I+I+G   +G + KA ++F +M    V   V+T+ +LI
Sbjct: 310 EAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLI 369

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPD 205
           +   +  +  +  +L  +   + + PD
Sbjct: 370 YALSKKGQVQETDKLFDEAVRRGIRPD 396



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
           S+ L+  ++ L   +   +   L+  L  +     A  LF  + R  L     T++IM+ 
Sbjct: 107 SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 162

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK-NVM 203
            L + G+  +A +L   M      PN +T+ T+I GF         ++++ +M+E+  + 
Sbjct: 163 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 218

Query: 204 PDASIVSIVVDLLAK 218
           P+      V+    K
Sbjct: 219 PNQYTYGTVISGWCK 233


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 113/217 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK   I+ A  +   M  KG + D+   NT+  GL +++Q E A +    M   G
Sbjct: 112 LIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKG 171

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  +YT  ID  CK G  VE+ +LF+ ++    E +   Y+ LIDG  K GR++ A 
Sbjct: 172 VVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAY 231

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   +    +  D+ TY+ ++HG    G++D A +LF ++ +  +  NV+T+  +I G 
Sbjct: 232 ELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGL 291

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +  +L  +M E  + PD  + + +V  L K
Sbjct: 292 SKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+ +  + +I+    ++ EM  KGIK D+ ++  +     +I   +RAF LFDE+   
Sbjct: 6   LLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEK 65

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+ A+  TY   IDG+CK G +  +  L   ++    +++   Y+ LIDG CK G ++ A
Sbjct: 66  GLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEA 125

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   + +     D+ T + +  GL    Q ++A    L M E  V PNV+++ TLI  
Sbjct: 126 FKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDI 185

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           + +     +  +L  +MK+    P+A   ++++D
Sbjct: 186 YCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLID 219



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++IN  CK    + A  L+ E+  KG+  +V  +  L  G+ +  ++E A  L +EMQ  
Sbjct: 41  VVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTR 100

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +   Y   IDG CK G I E+ ++   +     E DI   + + DGL K  + E A
Sbjct: 101 GLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEA 160

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
                ++    +V +VV+Y+ +I     +G   +A  LF +M++    PN +T+  LI G
Sbjct: 161 KRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDG 220

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     +  EL  +M+ K + PD
Sbjct: 221 HSKKGRMKEAYELRDEMRAKGIFPD 245



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 43  EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
           +I +VER   +F+EM   G+ AD   YT+ I+  CK G    +  LF  L       ++ 
Sbjct: 16  KIDEVER---MFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVH 72

Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
            Y  LIDG+CK+G +E A  L + +    L  + + Y+ +I G    G +D+A  + + M
Sbjct: 73  TYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIM 132

Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           E+     ++ T  T+  G  ++N+P +    L  M EK V+P+    + ++D+  K
Sbjct: 133 EKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCK 188



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 6/154 (3%)

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TYT+ ID    +G I E   +F  +     + DI  Y+ +I+  CK G  + A  LF  L
Sbjct: 3   TYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDEL 62

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR---I 184
               LVA+V TY  +I G+   G+M+ A  L  +M+   +  N + + TLI G+ +   I
Sbjct: 63  TEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLI 122

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +E  KV  ++ K   K    D   ++ + D L K
Sbjct: 123 DEAFKVQVIMEK---KGFENDIYTLNTIADGLRK 153



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 62/114 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G+ K   ++ A  L  EM +KGI PD+  + +L  G     +++ A +LF+E+++ 
Sbjct: 216 VLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQK 275

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114
           G+  +  TYT  I GL K G   E+ +L+  +       D + Y+ L+  L K+
Sbjct: 276 GLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 58/118 (49%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           +  Y+ LID    SG+++    +F  +    + AD+  Y+++I+     G   +A  LF 
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           ++ E  +  NV T+G LI G  +  E      L+++M+ + +  +  I + ++D   K
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCK 118


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 35/247 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE----- 56
           LING+CK  E++ A +L+  M  +GI+PD++ ++TL  G F+   +    KLF +     
Sbjct: 292 LINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKG 351

Query: 57  ------------------------------MQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
                                         M   G++ +  TYTI I GLC++G I E+ 
Sbjct: 352 VKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF 411

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
            ++  +     E  I  YS LIDG CK G L     L+  + +     DVV Y +++ GL
Sbjct: 412 GMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 471

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G M  A    + M   ++  NV+ F +LI G+ R+N   + +++   M    + PD 
Sbjct: 472 SKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDV 531

Query: 207 SIVSIVV 213
           +  + V+
Sbjct: 532 ATFTTVM 538



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 117/218 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI G C++  I  A  +Y ++L +G++P +V +++L  G  +   +   F L+++M + 
Sbjct: 396 ILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKM 455

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y + +DGL K G ++ ++     +      L++  ++ LIDG C+  R + A
Sbjct: 456 GYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEA 515

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +    +  DV T++ ++     +G++++A  LF  M +  + P+ + + TLI  
Sbjct: 516 LKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA 575

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +P+  ++L   M+   +  D ++ ++V+ LL K
Sbjct: 576 FCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFK 613



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           +IE A  L S +L  G  P+VV   TL  G  +  +++RAF LF  M++ G+  D   Y+
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             IDG  K G +    +LF        +LD+  +S  ID   KSG L  A  ++  +   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            +  +VVTY+I+I GL  DG++ +A  ++  + +  + P+++T+ +LI GF +       
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSG 445

Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             L   M +    PD  I  ++VD L+K  + L+++
Sbjct: 446 FALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAM 481



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G  K   +  A+    +ML + I+ +VV+ N+L  G   +++ + A K+F  M   
Sbjct: 466 VLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIY 525

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D  T+T  +      G + E++ LF  +  +  E D  AY  LID  CK  +  I 
Sbjct: 526 GIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIG 585

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+LF  + R  + AD+   +++IH L+   +++ A   F ++ E  + P+++T+ T+I G
Sbjct: 586 LQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICG 645

Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    R++E  ++ ELL   K     P+   ++I++ +L K
Sbjct: 646 YCSLRRLDEAERIFELL---KVTPFGPNTVTLTILIHVLCK 683



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 2/184 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLF-IGLFEIHQVERAFKLFDEMQRD 60
           LI+G+C+    + AL ++  M   GIKPDV    T+  + + E  ++E A  LF  M + 
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIME-GRLEEALFLFFRMFKM 560

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   Y   ID  CK+      ++LF  ++  K   DI   + +I  L K  R+E A
Sbjct: 561 GLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDA 620

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            + F++L  G +  D+VTY+ MI G  +  ++D+A  +F  ++     PN +T   LIH 
Sbjct: 621 SKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHV 680

Query: 181 FIRI 184
             +I
Sbjct: 681 LCKI 684


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 111/208 (53%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF 72
           E    ++ EM  +G +PD+ + NT    +F+   VE+   +F++++  G   D R+Y+I 
Sbjct: 6   EDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSIL 65

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
           I GL K G   E+  +F  ++     LD +AY+ ++DG CKSG+++ A E    +    +
Sbjct: 66  IHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHV 125

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
              V TY  +I GL    ++D+A+ LF + +   +  NVI + +LI GF ++    +   
Sbjct: 126 PPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL 185

Query: 193 LLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           +L +M +K + P+    + ++D L K E
Sbjct: 186 ILEEMMKKGLAPNVYTWNSLMDALVKAE 213



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 107/198 (54%), Gaps = 3/198 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K   ++ A  L+ E  SKGI+ +V+++++L  G  ++ +++ A+ + +EM + G
Sbjct: 135 IIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A +  T+   +D L K   I E++  F++++ +KC  +   YS LI+GLC+  +   A 
Sbjct: 195 LAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAF 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             +  + +  LV +VVTY+ MI GL   G +  A  LF   + N   P+  +F  LI G 
Sbjct: 255 VFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGM 314

Query: 182 IRINEPSKVIELLHKMKE 199
              N   + IE  H  +E
Sbjct: 315 SHAN---RAIEAYHVFEE 329



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 2   LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
           L+N Y  C  K  ++E    ++ ++   G  PDV  ++ L  GL +  Q      +F  M
Sbjct: 26  LLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAM 85

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           ++ G A D R Y   +DG CK+G + ++ E    +++      +  Y  +IDGL K  RL
Sbjct: 86  KQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRL 145

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  LF       +  +V+ YS +I G    G++D+A+ +  +M +  +APNV T+ +L
Sbjct: 146 DEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSL 205

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +   ++  E ++ +     MKE    P+    SI+++ L +
Sbjct: 206 MDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCR 246



 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 113/216 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G+CK+ +++ A     EM  K + P V  + ++  GL +I +++ A+ LF+E +  G
Sbjct: 100 VVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKG 159

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   Y+  IDG  K G I E+  +   +       ++  ++ L+D L K+  +  AL
Sbjct: 160 IELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEAL 219

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F S+       +  TYSI+I+GL    + +KA   + +M++  + PNV+T+ T+I G 
Sbjct: 220 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGL 279

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            ++   +    L  + K    +PDA+  + +++ ++
Sbjct: 280 AKVGNITDACSLFERFKANGGIPDAASFNALIEGMS 315



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 110/218 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K  +     +++  M  +G   D   +N +  G  +  +V++A++  +EM+  
Sbjct: 64  ILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V     TY   IDGL K   + E+  LF   +    EL++  YS LIDG  K GR++ A
Sbjct: 124 HVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  L  +V T++ ++  L    ++++A   F  M+E   +PN  T+  LI+G
Sbjct: 184 YLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILING 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R+ + +K      +M+++ ++P+    + ++  LAK
Sbjct: 244 LCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAK 281



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILING C+ ++   A   + EM  +G+ P+VV + T+  GL ++  +  A  LF+  + +
Sbjct: 239 ILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKAN 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  ++   I+G+      +E+  +F   R+  C ++++A   L+D L K+  +E A
Sbjct: 299 GGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKAECIEQA 358



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%)

Query: 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
           GR E   ++F  + R     D+   +  +  ++  G ++K   +F D++     P+V ++
Sbjct: 3   GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 62

Query: 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
             LIHG  +  +  +   + H MK++    DA   + VVD   K+
Sbjct: 63  SILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKS 107


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 113/198 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L +GY K K +E A+++  EM  K +KPD++++ T   GL   +++E +  +  EM   G
Sbjct: 467 LFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCG 526

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + A++  YT  ID   K G   E+V L + ++ L  ++ +  Y  LIDGLCK G ++ A+
Sbjct: 527 LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAV 586

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             F  + R  L  +++ Y+ +I GL  +  +++A +LF +M +  ++P+ + + +LI G 
Sbjct: 587 RYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGN 646

Query: 182 IRINEPSKVIELLHKMKE 199
           ++   P + + L ++M E
Sbjct: 647 MKHGNPGEALSLRNRMVE 664



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 112/213 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN +CK + I  A      M  +G++P+VV ++TL     +   +  A K F +M R G
Sbjct: 327 LINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVG 386

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  ID  CK G + E+ +L   ++     L+I  Y+ L+DGLC+ GR+  A 
Sbjct: 387 LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAE 446

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF +L +     +   Y+ + HG      M+KA D+  +M +  + P+++ +GT I G 
Sbjct: 447 ELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGL 506

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            R NE    + ++ +M +  +  ++ I + ++D
Sbjct: 507 CRQNEIEDSMAVIREMMDCGLTANSYIYTTLID 539



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 105/205 (51%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL+ + +M+  G+ P V  +N +   L     +E A  LF+EM+  G+  D  TY   ID
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G  K G +  +V +F  ++   CE D+  Y+ LI+  CK  R+  A E  H + +  L  
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQP 354

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           +VVTYS +I      G + +A+  F+DM    + PN  T+ +LI    +I + ++  +L 
Sbjct: 355 NVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLE 414

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
            +M++  V  +    + ++D L ++
Sbjct: 415 SEMQQAGVNLNIVTYTALLDGLCED 439



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 101/203 (49%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I G C+  EIE ++ +  EM+  G+  +  I+ TL    F++ +   A  L  EMQ  G+
Sbjct: 503 IWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGI 562

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
                TY + IDGLCK G + ++V  F  +     + +I  Y+ LIDGLCK+  LE A  
Sbjct: 563 KITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKN 622

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF+ +    +  D + Y+ +I G    G   +A  L   M E  +  ++  + +LI GF 
Sbjct: 623 LFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFS 682

Query: 183 RINEPSKVIELLHKMKEKNVMPD 205
           R  +      LL +M  K ++PD
Sbjct: 683 RYGQVQLAKSLLDEMLRKGIIPD 705



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 125/257 (48%), Gaps = 36/257 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG------------LFE----- 43
           ++I    +  ++E A +L+ EM +KG++PD+V +N+L  G            +FE     
Sbjct: 256 MVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDA 315

Query: 44  ------------------IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
                               ++ +AF+    M++ G+  +  TY+  ID  CK G ++E+
Sbjct: 316 GCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEA 375

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            + F  +  +  + +   Y+ LID  CK G L  A +L   + +  +  ++VTY+ ++ G
Sbjct: 376 NKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDG 435

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L  DG+M +A +LF  + +     N   + +L HG+I+     K +++L +M +KN+ PD
Sbjct: 436 LCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495

Query: 206 ASIVSI-VVDLLAKNEI 221
             +    +  L  +NEI
Sbjct: 496 LLLYGTKIWGLCRQNEI 512



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 111/217 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK   +  A   + +M+  G++P+   + +L     +I  +  AFKL  EMQ+ G
Sbjct: 362 LIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAG 421

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  +DGLC++G + E+ ELF  L      L+ Q Y+ L  G  K+  +E A+
Sbjct: 422 VNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAM 481

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  L  D++ Y   I GL    +++ +  +  +M +  +  N   + TLI  +
Sbjct: 482 DILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAY 541

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++ + ++ + LL +M++  +        +++D L K
Sbjct: 542 FKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCK 578



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 105/215 (48%), Gaps = 4/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C++  +  A  L+  +L  G   +  I+ +LF G  +   +E+A  + +EM +  
Sbjct: 432 LLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKN 491

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY--SCLIDGLCKSGRLEI 119
           +  D   Y   I GLC+   I +S+ + R   ++ C L   +Y  + LID   K G+   
Sbjct: 492 LKPDLLLYGTKIWGLCRQNEIEDSMAVIR--EMMDCGLTANSYIYTTLIDAYFKVGKTTE 549

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ L   +    +   VVTY ++I GL   G + +A   F  M  N + PN++ +  LI 
Sbjct: 550 AVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID 609

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           G  + +   +   L ++M +K + PD  + + ++D
Sbjct: 610 GLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLID 644



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 97/202 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K  +   A+NL  EM   GIK  VV +  L  GL +I  V++A + FD M R+G
Sbjct: 537 LIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNG 596

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +   YT  IDGLCKN  + E+  LF  +       D   Y+ LIDG  K G    AL
Sbjct: 597 LQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEAL 656

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L + +    +  D+  Y+ +I G    GQ+  A  L  +M    + P+ +    L+  +
Sbjct: 657 SLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKY 716

Query: 182 IRINEPSKVIELLHKMKEKNVM 203
             + + ++ + L   M  + ++
Sbjct: 717 YELGDINEALALHDDMARRGLI 738



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 12/199 (6%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+G CK   ++ A+  +  M   G++P+++I+  L  GL +   +E A  LF+EM   
Sbjct: 571 VLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDK 630

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D   YT  IDG  K+G   E++ L   +  +  ELD+ AY+ LI G  + G++++A
Sbjct: 631 GISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLA 690

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L   + R  ++ D V    ++   Y  G +++A  L  DM              LI G
Sbjct: 691 KSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRG----------LISG 740

Query: 181 FIRINEPS--KVIELLHKM 197
            I I  PS    +  LHK+
Sbjct: 741 TIDITVPSCLTAVTKLHKL 759



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 92/191 (48%)

Query: 28  KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
           +P   + +TLF  L ++  +E A + F +M +  V    R+    +  L K+     ++ 
Sbjct: 178 RPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALS 237

Query: 88  LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
            F+ + +      +  Y+ +I  L + G LE A  LF  +    L  D+VTY+ +I G  
Sbjct: 238 FFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYG 297

Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
             G +  A  +F +M++    P+VIT+ +LI+ F +     +  E LH MK++ + P+  
Sbjct: 298 KVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVV 357

Query: 208 IVSIVVDLLAK 218
             S ++D   K
Sbjct: 358 TYSTLIDAFCK 368



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 71/141 (50%)

Query: 80  GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
           G + E+ + F  +   +    +++ + L+  L KS +  +AL  F  +    L   V TY
Sbjct: 195 GMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTY 254

Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
           +++I  L  +G ++ A  LF +M+   + P+++T+ +LI G+ ++   +  + +  +MK+
Sbjct: 255 NMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKD 314

Query: 200 KNVMPDASIVSIVVDLLAKNE 220
               PD    + +++   K E
Sbjct: 315 AGCEPDVITYNSLINCFCKFE 335



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 51/122 (41%)

Query: 97  CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
           C      +  L + L   G LE A + F  + +  ++  V + + ++H L    +   A 
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLAL 236

Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
             F DM    ++P+V T+  +I    R  +      L  +MK K + PD    + ++D  
Sbjct: 237 SFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGY 296

Query: 217 AK 218
            K
Sbjct: 297 GK 298


>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 823

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G   +  ++ A+N+  +++ +G+ PD  I+N L  GL +  +   A  LF EM   
Sbjct: 420 ILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDR 479

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEI 119
            +  D   Y   IDG  ++G   E+ ++F TL + K  ++D+  ++ +I G C+SG L+ 
Sbjct: 480 SILPDAYVYATLIDGFIRSGDFDEARKVF-TLSVEKGVKVDVVHHNAMIKGFCRSGMLDE 538

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL   + +    LV D  TYS +I G      M  A  +F DME+N   PNV+T+ +LI+
Sbjct: 539 ALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLIN 598

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223
           GF    + S   E   +M+ ++++P+    + ++   AK   +L
Sbjct: 599 GFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKESSTL 642



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 35/254 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C   ++E    L  +   KG  P++V +NT+  G  ++  +E A  +F E++  
Sbjct: 210 IMVKGMCSEGKVEEGRKLIEDRWGKGCVPNIVFYNTIIGGYCKLGDIENAKLVFKELKLK 269

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-----RTLRIL-------------------- 95
           G      T+   I+G CK G  V S  L      R LR+                     
Sbjct: 270 GFMPTLETFGTMINGFCKKGDFVASDRLLEEVKERGLRVCVWFLNNIIDAKYRHGFKVDP 329

Query: 96  ----------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
                      C+ DI  Y+ LI+ LCK G+ E+A  L     +  L+   ++Y+ +I  
Sbjct: 330 AESIRWIVANDCKPDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQA 389

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
                + D A  L L + E    P+++T+G LIHG +        + +  K+ ++ V PD
Sbjct: 390 YCKSKEYDIASKLLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPD 449

Query: 206 ASIVSIVVDLLAKN 219
           A+I ++++  L K 
Sbjct: 450 AAIYNMLMSGLCKT 463



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 15/212 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ ++ + + A  +++  + KG+K DVV HN +  G      ++ A    + M  + 
Sbjct: 491 LIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEH 550

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  IDG  K   +  ++++FR +   KC+ ++  Y+ LI+G C  G   +A 
Sbjct: 551 LVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAE 610

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQ-MDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           E F  +    LV +VVTY+ +I     +   ++KA   +  M  N   PN +TF  L+ G
Sbjct: 611 ETFKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQG 670

Query: 181 FIR------INEPSK--------VIELLHKMK 198
           F++      + EP            E  H+MK
Sbjct: 671 FVKKTSGRFLGEPDGFNHGQSFLFFEFFHRMK 702



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 107/236 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILIN  CK  + E A  L  E   KG+    + +  L     +  + + A KL  ++   
Sbjct: 350 ILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKLLLQLAER 409

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  TY I I GL  +G++ ++V +   L       D   Y+ L+ GLCK+GR   A
Sbjct: 410 GCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPA 469

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    ++ D   Y+ +I G    G  D+A  +F    E  V  +V+    +I G
Sbjct: 470 KLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNAMIKG 529

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
           F R     + +  +++M E++++PD    S ++D   K +    ++  F   E+ +
Sbjct: 530 FCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNK 585



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 82/190 (43%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
           PDV+  N L   + +  ++E A K++DEM   G   D  +  I + G+C  G + E  +L
Sbjct: 168 PDVIACNALLSLVVKSRRLEDARKVYDEMCERGGCVDNYSTCIMVKGMCSEGKVEEGRKL 227

Query: 89  FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
                   C  +I  Y+ +I G CK G +E A  +F  L     +  + T+  MI+G   
Sbjct: 228 IEDRWGKGCVPNIVFYNTIIGGYCKLGDIENAKLVFKELKLKGFMPTLETFGTMINGFCK 287

Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
            G    +  L  +++E  +   V     +I    R        E +  +   +  PD + 
Sbjct: 288 KGDFVASDRLLEEVKERGLRVCVWFLNNIIDAKYRHGFKVDPAESIRWIVANDCKPDIAT 347

Query: 209 VSIVVDLLAK 218
            +I+++ L K
Sbjct: 348 YNILINRLCK 357



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 15/195 (7%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GY K +++  A+ ++ +M     KP+VV + +L  G         A + F EMQ   
Sbjct: 561 IIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRD 620

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCK--SGRL- 117
           +  +  TYT  I    K    +E    +  L +  KC  +   ++CL+ G  K  SGR  
Sbjct: 621 LVPNVVTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGRFL 680

Query: 118 -----------EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
                       +  E FH +           Y+ ++  L   G +  A  L   M +  
Sbjct: 681 GEPDGFNHGQSFLFFEFFHRMKSDGWSDHGAAYNSVLVCLCVHGMVKTACMLQDRMVKKG 740

Query: 167 VAPNVITFGTLIHGF 181
            +P+ ++F  ++HGF
Sbjct: 741 FSPDPVSFAAILHGF 755


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 118/223 (52%), Gaps = 1/223 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  E+E A  L+ ++  KG  P +    +L  G  ++   E    L  EM+  G
Sbjct: 249 LIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRG 308

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ + + Y   ID   K G+ +++ +  + +    CE D+  Y+ LI+  C  G +E A 
Sbjct: 309 LSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAE 368

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L     R  L  + +TY+ ++HG    G+  KA D  ++M  + +  ++I++G LIHG 
Sbjct: 369 KLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGL 428

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEISL 223
           +   E    + +  +M  + ++PDA+I +++++ L  K ++S+
Sbjct: 429 VVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSM 471



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G     E++ AL +   M+++GI PD  I+N L  GLF+  ++  A  +  EM    
Sbjct: 424 LIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQN 483

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +A D   Y   +DG  ++G + E+ +LF+ +     +  +  Y+ +I G  KSG ++ A+
Sbjct: 484 IAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAI 543

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
                + R   V D+ T+S +I G      M+    +F  M +    PNV+T+ +LI+G+
Sbjct: 544 LCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGY 603

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            R  E     +L   M+   + P     SI++    K
Sbjct: 604 CRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCK 640



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 107/212 (50%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A +   EM     +PD+V +NTL        +VE A KL ++  R G+A +  TYT  + 
Sbjct: 332 AKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVH 391

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           G CK G   ++ +    +     E+D+ +Y  LI GL  +G ++ AL +   +    ++ 
Sbjct: 392 GYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILP 451

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D   Y+++++GL+  G++  A  +  +M +  +AP+   + TL+ GFIR     +  +L 
Sbjct: 452 DANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLF 511

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
             + EK + P     ++++   +K+ +  N++
Sbjct: 512 QLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAI 543



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G C    IE  + L      KG  P++V +NTL  G  +  +VE A+KLF +++  
Sbjct: 213 IMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMK 272

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFR-TLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G     +T+   ++G CK G + E+++L    ++     +++Q Y+ +ID   K G    
Sbjct: 273 GFIPTLQTFGSLVNGFCKMG-MFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIK 331

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A +    +       D+VTY+ +I+   + G++++A  L        +APN +T+  L+H
Sbjct: 332 AKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVH 391

Query: 180 GFIRINEPSKVIELLHKM 197
           G+ +  E +K  + L +M
Sbjct: 392 GYCKQGEYTKATDYLIEM 409



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 106/240 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+NG  K  ++  A  + +EML + I PD  ++ TL  G      ++ A KLF  +   
Sbjct: 458 VLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEK 517

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+      Y + I G  K+G +  ++     +R      DI  +S +IDG  K   +   
Sbjct: 518 GLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAV 577

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  + +     +VVTY+ +I+G    G+   A  LF  M  + + P+V+T+  LI  
Sbjct: 578 LKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGS 637

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
           F +  +  K +     M      P+ +    +V+     + +  S     +HE    + E
Sbjct: 638 FCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFE 697



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 4/181 (2%)

Query: 29  PDVVIHNTLFIGLFEIHQVERAFKLFDEM----QRDGVAADTRTYTIFIDGLCKNGYIVE 84
           P     N+L   L +  ++E A +L+DEM      D +  D  T +I + GLC  G I +
Sbjct: 167 PSTYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIED 226

Query: 85  SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
            ++L  +     C  +I  Y+ LIDG CK G +E A +LF  L     +  + T+  +++
Sbjct: 227 GIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVN 286

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           G    G  +    L L+M++  ++ NV  +  +I    ++    K  + L +M E    P
Sbjct: 287 GFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEP 346

Query: 205 D 205
           D
Sbjct: 347 D 347


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 124/254 (48%), Gaps = 34/254 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK K+++ A+ +++ ML + I+P +V ++ +  GL +  +V  A+++  EM+  G
Sbjct: 244 LIRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLG 303

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   YT  IDGLCK+G++ ++  L+R ++      + + Y+ LID  C++ R E AL
Sbjct: 304 CELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETAL 363

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + R     DV  Y+ ++ GL  + ++D A  LF +M    V+ +   +  L+HG 
Sbjct: 364 GLFDHI-RDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGA 422

Query: 182 IRINEPSKVIELL--------------------------------HKMKEKNVMPDASIV 209
            R   P +   +L                                ++M+++ + PD +  
Sbjct: 423 FRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCCLESGMVLFYEMRQRGIAPDFATY 482

Query: 210 SIVVD-LLAKNEIS 222
           S ++D LL   EI 
Sbjct: 483 SALIDRLLGSGEIG 496



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 3/220 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE-MQ 58
           +LI+GYCK   ++ AL L  EM + + I+PDVVI+N++  GL   ++   A+K  DE M 
Sbjct: 171 VLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMV 230

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G +    TYT  I G CK   +  +V ++  +   K +  I +YS +IDGL K+GR+ 
Sbjct: 231 LQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVY 290

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  +   +       +VV Y+ +I GL   G +D A+ L+  M+ +   PN  T+ TLI
Sbjct: 291 DAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLI 350

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             F R +     + L   +++   + D ++ + VV  L +
Sbjct: 351 DTFCRNDRTETALGLFDHIRDYCPL-DVAMYTAVVSGLCR 389



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I G+CKN+ +E A  ++ EM+ S   +PD  ++  L  G  +  +++RA +L  EM+ 
Sbjct: 135 VMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRV 194

Query: 60  DG-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRL 117
           +  +  D   Y   +DGLC++   +E+ +      +L+ C   +  Y+ LI G CK+ ++
Sbjct: 195 ERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKM 254

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           ++A+ +++++    +   +V+YS++I GL   G++  A+ +  +ME      NV+ + TL
Sbjct: 255 KLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTL 314

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           I G  +         L   MK     P+    + ++D   +N+ +  +L  F
Sbjct: 315 IDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLF 366



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I+  CK+ ++ GAL + + ML  G   P+     +L   L +  ++  A +  + M+ 
Sbjct: 64  VVIDRACKSGDLRGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRD 123

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLE 118
            G+  D  T+T+ I G CKN  +  + E+F+ + +  +C+ D   Y  LIDG CK  R++
Sbjct: 124 AGIHPDVVTFTVMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMD 183

Query: 119 IALELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD--MEENAVAPNVITFG 175
            ALEL   +     +  DVV Y+ ++ GL    +  +A   FLD  M     +P V+T+ 
Sbjct: 184 RALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWK-FLDETMVLQGCSPTVVTYT 242

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +LI G  +  +    + + + M E+ + P     S+++D L+K
Sbjct: 243 SLIRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSK 285



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 36/227 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G CK+  ++ A  LY  M   G  P+   + TL        + E A  LFD + RD 
Sbjct: 314 LIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHI-RDY 372

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR----- 116
              D   YT  + GLC+   + ++  LFR +R+     D  AY+ L+ G  +S R     
Sbjct: 373 CPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPEEAF 432

Query: 117 ---------------------------LEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
                                      LE  + LF+ + +  +  D  TYS +I  L   
Sbjct: 433 RILEELGDDPGCVANLLTYNTVIAGCCLESGMVLFYEMRQRGIAPDFATYSALIDRLLGS 492

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI---RINEPSKVIEL 193
           G++ +A DL  +M  + ++P     G ++       R +  +KVIE+
Sbjct: 493 GEIGRAFDLCEEMLASGLSPPSGVLGRVVARLCWSRRGDLAAKVIEM 539



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 5/206 (2%)

Query: 17  NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           +LY   L     PD   H  L + L E      A +   E    G        ++ ID  
Sbjct: 12  SLYHRSLHLPPSPDAA-HAQL-LALHESGDANAAARFLREKTAAGSIFPGFLSSVVIDRA 69

Query: 77  CKNGYIVESVELFRT-LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
           CK+G +  ++ +  T L       +  A++ LID L KS RL  A      +    +  D
Sbjct: 70  CKSGDLRGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPD 129

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           VVT+++MI G   +  M++A ++F +M + N   P+   +G LI G+ +     + +ELL
Sbjct: 130 VVTFTVMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELL 189

Query: 195 HKMK-EKNVMPDASIVSIVVDLLAKN 219
            +M+ E+ + PD  I + +VD L ++
Sbjct: 190 REMRVERRIQPDVVIYNSIVDGLCRS 215


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 116/217 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK+  ++ A+ L  EM S+G  PD+  +NT+   L    Q+E A  +F+ +  +G
Sbjct: 422 MIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEG 481

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V A+  TY   I  L ++G   ++V L + + +  C LD+ +Y+ LI  +CK G ++ +L
Sbjct: 482 VVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    +  + V+Y+I+I  L  + ++  A +L   M    +AP+++T+ TLI+G 
Sbjct: 542 VLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGL 601

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            ++      + LL K+  +NV PD    +I++    K
Sbjct: 602 CKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 638



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 100/196 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G     ++  A  LY  M  KG +PD   ++ L  GL ++ ++  A +L  EM++ G
Sbjct: 317 VIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKG 376

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +  TYTI +   CKNG   ++  L   +      L+ Q Y+ +I  LCK GR++ A+
Sbjct: 377 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAM 436

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +       D+ +Y+ +I+ L N+ QM++A  +F ++ E  V  N IT+ T+IH  
Sbjct: 437 GLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHAL 496

Query: 182 IRINEPSKVIELLHKM 197
           +R       + L  +M
Sbjct: 497 LRDGRWQDAVRLAKEM 512



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++G CK   I  A+ L  EM  KG  P+VV +  +     +    +    L +EM   
Sbjct: 351 ILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +++ Y   I  LCK+G + E++ L + +R   C  DI +Y+ +I  LC + ++E A
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEA 470

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F +L    +VA+ +TY+ +IH L  DG+   A  L  +M  +  + +V+++  LI  
Sbjct: 471 EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKA 530

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + + LL +M EK + P+    +I++  L K
Sbjct: 531 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++ G C    +  A  L   M++KG  P V+ +  L  GL  + Q + A  +   +    
Sbjct: 251 VVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN 310

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V      +   I G    G + E+ EL+ T+ +  C+ D   YS L+ GLCK GR+  A+
Sbjct: 311 VV----LFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAV 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   + +     +VVTY+I++H    +G  D    L  +M    +  N   +  +I+  
Sbjct: 367 RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 426

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +     + + L+ +M+ +   PD    + ++  L  NE
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 465



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 4/213 (1%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C+      AL L   M   G  PD V++ T+   L +   V  A  L +EM   G AAD 
Sbjct: 186 CRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADV 245

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            T+   + G+C  G + E+  L   +    C   +  Y  L+ GLC+  + + A  +   
Sbjct: 246 NTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 305

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +P      +VV ++ +I G   +G++ +A +L+  M      P+  T+  L+HG  ++  
Sbjct: 306 VPE----LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGR 361

Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            S  + LL +M++K   P+    +IV+    KN
Sbjct: 362 ISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN 394



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 2/191 (1%)

Query: 15  ALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRDGVAADTRTYTIF 72
           AL+L  ++  + G++P    +N +   L        A  L+  M  RD V   T T+ + 
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 73  IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132
              LC+ G   E++ L R +    C  D   Y  +I  LC  G +  A  L + +     
Sbjct: 182 ARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241

Query: 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192
            ADV T+  ++ G+   G++ +A  L   M      P V+T+G L+ G  R+ +  +   
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301

Query: 193 LLHKMKEKNVM 203
           +L ++ E NV+
Sbjct: 302 MLGRVPELNVV 312



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 8/161 (4%)

Query: 49  RAFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYIVESVELFRTL----RILKCELDIQA 103
           RA  L D++ R  GV    R+Y + +  L +     +++ L+R +    R+         
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTF---T 177

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           +      LC+ GR   AL L   + R   V D V Y  +IH L + G + +A  L  +M 
Sbjct: 178 FGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEML 237

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
               A +V TF  ++ G   +    +   L+ +M  K  MP
Sbjct: 238 LMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMP 278



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+  CK + +  AL L  +ML++G+ PD+V +NTL  GL ++  +  A  L +++  +
Sbjct: 561 ILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE 620

Query: 61  GVAADTRTYTIFIDGLCK 78
            V  D  TY I I   CK
Sbjct: 621 NVHPDIITYNILISWHCK 638


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 116/218 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            I+ +CK+ E++ AL  +  M    + P+VV    L  G  +   +E A  L+ EM+R  
Sbjct: 169 WIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVR 228

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ +  TYT  IDG CK G +  + E++  +   + E +   Y+ +IDG  + G  + A+
Sbjct: 229 MSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAM 288

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +    +    +  D+  Y ++I GL  +G++ +A ++  DME++ + P+++ F T+++ +
Sbjct: 289 KFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAY 348

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +       + + HK+ E+   PD   +S ++D +AKN
Sbjct: 349 FKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKN 386



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 112/217 (51%), Gaps = 5/217 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  ++E A++LY EM    +  +VV +  L  G  +  +++RA +++  M  D 
Sbjct: 204 LIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDR 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  ++  YT  IDG  + G    +++    +      LDI AY  +I GLC +G+L+ A 
Sbjct: 264 VEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEAT 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           E+   + +  LV D+V ++ M++  +  G+M  A +++  + E    P+V+   T+I G 
Sbjct: 324 EIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGI 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +  + I      K  +VM      ++++D L K
Sbjct: 384 AKNGQLHEAIVYFCIEKANDVM-----YTVLIDALCK 415



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 37/237 (15%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           +L   + ++S+G  P     N++   + ++ QV+ A  +   M R G   D  +Y   ID
Sbjct: 40  SLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLID 99

Query: 75  GLCKNGYIVESVELFRTLR------------------------------------ILK-C 97
           G C+NG I  +  +  +LR                                    +LK C
Sbjct: 100 GHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCC 159

Query: 98  ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157
             ++  YS  ID  CKSG L++AL+ FHS+ R  L  +VVT++ +I G    G ++ A  
Sbjct: 160 SPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVS 219

Query: 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           L+ +M    ++ NV+T+  LI GF +  E  +  E+  +M E  V P++ + + ++D
Sbjct: 220 LYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIID 276



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 117/250 (46%), Gaps = 37/250 (14%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTL-------------------------FIGL 41
           CK  +++ A ++   M   G +PDV+ +N+L                         FI  
Sbjct: 67  CKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICK 126

Query: 42  FEIHQVERAFKLFDEMQR------------DGVAADTRTYTIFIDGLCKNGYIVESVELF 89
            +I      F  F +M+                + +  TY+ +ID  CK+G +  +++ F
Sbjct: 127 PDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSF 186

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
            +++      ++  ++CLIDG CK+G LE+A+ L+  + R  +  +VVTY+ +I G    
Sbjct: 187 HSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKK 246

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
           G+M +A +++  M E+ V PN + + T+I GF +  +    ++ L KM  + +  D +  
Sbjct: 247 GEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAY 306

Query: 210 SIVVDLLAKN 219
            +++  L  N
Sbjct: 307 GVIISGLCGN 316



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++N Y K+  ++ A+N+Y +++ +G +PDVV  +T+  G+ +  Q+  A   F   + + 
Sbjct: 344 MMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKAND 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V      YT+ ID LCK G  +E   LF  +       D   Y+  I GLCK G L  A 
Sbjct: 404 V-----MYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAF 458

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   + +  L+ D++ Y+ +I+GL + G M +A  +F +M  + ++P+   F  LI  +
Sbjct: 459 KLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAY 518

Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
            +    +   +LL  M+ + ++   S
Sbjct: 519 EKEGNMAAASDLLLDMQRRGLVTAVS 544



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 5/213 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G C N +++ A  +  +M    + PD+VI  T+    F+  +++ A  ++ ++   
Sbjct: 308 VIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIER 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D    +  IDG+ KNG + E++  F     ++   D+  Y+ LID LCK G     
Sbjct: 368 GFEPDVVALSTMIDGIAKNGQLHEAIVYF----CIEKANDVM-YTVLIDALCKEGDFIEV 422

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    LV D   Y+  I GL   G +  A  L   M +  +  +++ + TLI+G
Sbjct: 423 ERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYG 482

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
                   +  ++  +M    + PD+++  +++
Sbjct: 483 LASKGLMVEARQVFDEMLNSGISPDSAVFDLLI 515



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  CK  +      L+S++   G+ PD  ++ +   GL +   +  AFKL   M ++
Sbjct: 408 VLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQE 467

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  D   YT  I GL   G +VE+ ++F  +       D   +  LI    K G +  A
Sbjct: 468 GLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAA 527

Query: 121 LELFHSLPRGVLVADV 136
            +L   + R  LV  V
Sbjct: 528 SDLLLDMQRRGLVTAV 543



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 8/146 (5%)

Query: 102 QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161
            +++ ++  +CK G+++ A ++ HS+PR     DV++Y+ +I G   +G +  A  +   
Sbjct: 57  SSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLES 116

Query: 162 MEEN---AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  +      P++++F +L +GF ++    +V   +  M  K   P+    S  +D   K
Sbjct: 117 LRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVML-KCCSPNVVTYSTWIDTFCK 175

Query: 219 N-EISLNSLPSFTVHERQEEVDESNV 243
           + E+ L +L SF  H  + +    NV
Sbjct: 176 SGELQL-ALKSF--HSMKRDALSPNV 198


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 111/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I GYCK    + A+  +++M  + ++PD + + TL    +     +    L+ EM+  G
Sbjct: 266 MIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      Y++ I GLCK+G  VE   +F  +    C+ ++  Y+ LID   K+G +  A+
Sbjct: 326 LEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAI 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +       D VTY ++++GL   G++D+A + F   ++N VA N + + +LI G 
Sbjct: 386 NLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGL 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     +  +   +M E+    D+   + ++D LAK+
Sbjct: 446 GKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKS 483



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 1   ILINGYCKN-KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           ++I G CK+ + +EG+ +++  M  KG K +V I+  L     +   V  A  LF+ M+ 
Sbjct: 335 LVIGGLCKDGRTVEGS-SVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKG 393

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           +G   D  TY + ++GLCK+G + E+VE F   +  +  ++   YS LIDGL K+GR++ 
Sbjct: 394 EGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDE 453

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A + F  +       D   Y+ +I  L   G+M++A  LF  ME+      V T+  LI 
Sbjct: 454 AEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILIS 513

Query: 180 GFIRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEIS 222
           G  + +   + ++L   M +K + P  AS  ++ V L    +++
Sbjct: 514 GLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVA 557



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 110/211 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y KN  +  A+NL+  M  +G +PD V +  +  GL +  +++ A + F+  + + 
Sbjct: 371 LIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNE 430

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           VA +   Y+  IDGL K G + E+ + F  +    C  D   Y+ LID L KSG++E AL
Sbjct: 431 VAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEAL 490

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +      V TY+I+I GL+ + + ++A  L+  M +  + P   +F  L  G 
Sbjct: 491 VLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGL 550

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
               + ++  ++L ++    V+P+ +   ++
Sbjct: 551 CLSGKVARACKILDELAPMGVIPETAFEDMI 581



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            L+NG   +  IE A  ++  M    I PDVV +NT+  G  +    ++A + F +M++ 
Sbjct: 230 FLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKR 289

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I      G     + L++ +     E+   AYS +I GLCK GR    
Sbjct: 290 NLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEG 349

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F ++ +    A+V  Y+ +I     +G +++A +LF  M+     P+ +T+G +++G
Sbjct: 350 SSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNG 409

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     + +E     K+  V  +A   S ++D L K
Sbjct: 410 LCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGK 447



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 91/208 (43%)

Query: 12  IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
           +E  L ++  M   GI+P +   N L  GL     +E A ++F+ M+   +  D  +Y  
Sbjct: 206 VEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNT 265

Query: 72  FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
            I G CK G   +++E F  +     E D   Y  LI      G  +  L L+  +    
Sbjct: 266 MIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERG 325

Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
           L      YS++I GL  DG+  +   +F +M +     NV  +  LI  + +    ++ I
Sbjct: 326 LEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAI 385

Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            L  +MK +   PD     ++V+ L K+
Sbjct: 386 NLFERMKGEGFEPDDVTYGVIVNGLCKS 413



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 89/202 (44%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           ++ E   KG    V   N+L      +  VE    ++  M+  G+     T+   ++GL 
Sbjct: 177 IFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLV 236

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
            + +I  +  +F  +   K   D+ +Y+ +I G CK+G  + A+E F  + +  L  D +
Sbjct: 237 NSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKI 296

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TY  +I   Y++G  D    L+ +MEE  +      +  +I G  +     +   +   M
Sbjct: 297 TYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENM 356

Query: 198 KEKNVMPDASIVSIVVDLLAKN 219
            +K    + +I + ++D   KN
Sbjct: 357 NKKGCKANVAIYTALIDAYGKN 378



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 103/218 (47%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++NG CK+  ++ A+  +       +  + + +++L  GL +  +V+ A K F+EM   
Sbjct: 405 VIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVER 464

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+  Y   ID L K+G + E++ LF+ +    C+  +  Y+ LI GL K  R E A
Sbjct: 465 GCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEA 524

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L+  +    +     ++  +  GL   G++ +A  +  ++    V P    F  +I+ 
Sbjct: 525 LKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPET-AFEDMINV 583

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  +L   + ++       + +I+++ L K
Sbjct: 584 LCKAGRTEQACKLADGIVDRGREVPGRVRTILINALRK 621



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G  K    E AL L+  M+ KGI P       L +GL    +V RA K+ DE+   
Sbjct: 510 ILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPM 569

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  +T  +   I+ LCK G   ++ +L   +     E+  +  + LI+ L K+G  ++A
Sbjct: 570 GVIPET-AFEDMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGNADLA 628

Query: 121 LELFHS 126
           ++L HS
Sbjct: 629 MKLMHS 634


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 4/217 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  CK + I  A+  +  M     +PDVV +NTL  GL +  +V +A  LF  M+  
Sbjct: 75  VVIDTLCKARRISRAIEFFETM----PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGA 130

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+     TYT  ID  CK      +  L + +   KC   + +Y  +I+GLCK+ +++ A
Sbjct: 131 GITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQA 190

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +LF  +       D VTY+ +IHGL    ++ +A DL   M EN   P+ ITF  LI G
Sbjct: 191 YQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEG 250

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
               +   +   L   M ++   PD    +++V  L 
Sbjct: 251 LCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLC 287



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CKN++++ A  L+ EM   G KPD V +NTL  GL    ++  A  L   M  +G
Sbjct: 177 IINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+T  I+GLC    I E+  LF+ +    C  D+  ++ L+  LC   +L  AL
Sbjct: 237 FQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPAL 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +  + P       V+ Y+ +   L      D+A  L   M    V PNV+T+     G 
Sbjct: 297 SVVRNYP--ACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGL 354

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
               E  +      +M E+ + PD    +++VD   K +
Sbjct: 355 GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKAD 393



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 4/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+   C+  +I+ A +  +EM  + + PDV  +N +   L +  ++ RA + F+ M    
Sbjct: 41  LVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE-- 98

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   + GLCKNG + ++  LF ++           Y+ LID  CK  + E A 
Sbjct: 99  --PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAY 156

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +        V +Y  +I+GL  + ++D+A+ LF +M+     P+ +T+ TLIHG 
Sbjct: 157 GLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGL 216

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
                  +  +LL  M E    PD    + +++ L   +
Sbjct: 217 CVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTD 255



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + +  E  + ++  + S+  KP+ + +  L   L    ++++A     EM R+ +  D  
Sbjct: 12  RARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVF 71

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY + ID LCK   I  ++E F T+     E D+  Y+ L+ GLCK+GR+  A  LF S+
Sbjct: 72  TYNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSM 127

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
               +    VTY+ +I       Q + A+ L   M     +P V ++ ++I+G  +  + 
Sbjct: 128 EGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKV 187

Query: 188 SKVIELLHKMKEKNVMPD 205
            +  +L  +MK     PD
Sbjct: 188 DQAYQLFEEMKLAGCKPD 205



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 39/230 (16%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
           LI G C    I+ A  L+  M  +G  PD+V H  L                        
Sbjct: 247 LIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACP 306

Query: 38  ---------FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
                    F  L      +RA +L  +M R GV  +  TYT F  GL   G   E +  
Sbjct: 307 EAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGL---GDWKEGMRA 363

Query: 89  FRTLRIL---KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           +R  R +     E D+ AY+ L+DG CK+ RL++A ++   + +  L  ++VTY+ ++  
Sbjct: 364 YREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGH 423

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
               G+++   +L   M      P+V T+ TL+ G   + +       L+
Sbjct: 424 HCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLN 473



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 32  VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
           V  N L   L    + E+   +F  +       +  +Y   +  LC+ G I ++      
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 92  LRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151
           +   K   D+  Y+ +ID LCK+ R+  A+E F ++P      DVVTY+ ++ GL  +G+
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGR 116

Query: 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211
           + +A  LF  ME   + P+ +T+ TLI  F ++ +      LL  M  +   P       
Sbjct: 117 VAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCS 176

Query: 212 VVDLLAKNE 220
           +++ L KN 
Sbjct: 177 IINGLCKNR 185



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+  +C+  ++E    L   M+S+G +PDV   +TL  GLF + Q + A+   +     G
Sbjct: 420 LVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQG 479


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 122/228 (53%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K  + + A   Y EML + I P+VVI++++   L +   +++A ++ D M ++G
Sbjct: 204 VIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNG 263

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TYT  + G C +G + E+++    +     E ++  YS  +D LCK+GR   A 
Sbjct: 264 VTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEAR 323

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F S+ +  L  D+ TYS ++HG   +G + + H LF  M ++ + P+   F TLI+  
Sbjct: 324 KIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYAS 383

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +  +  + + +  KM+++ + P+    S +++   K     N+L  F
Sbjct: 384 AKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALF 431



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I   CK + ++ A+ ++  M+  G+ P+   + +L  G     Q+  A K  ++M  +G
Sbjct: 239 IIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNG 298

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +  TY+ F+D LCKNG   E+ ++F ++     + DI  YS L+ G    G L    
Sbjct: 299 VEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMH 358

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  + +  +  D   ++ +I+     G++D+A  +F  M +  + PN +T+ TLI+G+
Sbjct: 359 GLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGY 418

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +I      + L  +M    V P+
Sbjct: 419 CKITRMENALALFQEMVSNGVSPN 442



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G+C + ++  A+    +M S G++P+VV +++    L +  +   A K+FD M + G
Sbjct: 274 LVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRG 333

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TY+  + G    G +VE   LF  +     + D   ++ LI    K G+++ A+
Sbjct: 334 LKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAM 393

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +F  + +  L  + VTYS +I+G     +M+ A  LF +M  N V+PN IT+  ++ G 
Sbjct: 394 LVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGL 453

Query: 182 IRINEPSKVIEL 193
            R    +   E 
Sbjct: 454 FRTGRTATAKEF 465



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
           ILI   C    ++        ++ KG + + +I N L  GL    + + A  +    M  
Sbjct: 95  ILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTE 154

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR--ILKCELDIQAYSCLIDGLCKSGRL 117
                +  ++TI + GLC      E++EL   +      C  ++ +YS +IDGL K G  
Sbjct: 155 LSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDP 214

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A   +  +    ++ +VV YS +I  L     MDKA ++   M +N V PN  T+ +L
Sbjct: 215 DKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSL 274

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +HGF    + ++ I+ L KM    V P+    S  +D L KN
Sbjct: 275 VHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKN 316



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 3/212 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C +K  + A+++    +++    P+V  H  +  GL   ++ + A +L   M  D
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190

Query: 61  GVAA--DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G     +  +Y+  IDGL K G   ++   +R +   +   ++  YS +I  LCK   ++
Sbjct: 191 GGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMD 250

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+E+   + +  +  +  TY+ ++HG  + GQ+ +A      M  N V PNV+T+ + +
Sbjct: 251 KAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFM 310

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
               +    ++  ++   M ++ + PD +  S
Sbjct: 311 DYLCKNGRCTEARKIFDSMVKRGLKPDITTYS 342



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 36/189 (19%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG------LFEIHQVERAFKLFDEMQRD 60
           CKN     A  ++  M+ +G+KPD+  +++L  G      L E+H       LFD M + 
Sbjct: 314 CKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMH------GLFDLMVQS 367

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D   +   I    K G + E++ +F  +R    + +   YS LI+G CK  R+E A
Sbjct: 368 DMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENA 427

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-------------------- 160
           L LF  +    +  + +TY+IM+ GL+  G+   A + ++                    
Sbjct: 428 LALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKKDLIEQGLLEELD 487

Query: 161 ----DMEEN 165
                ME+N
Sbjct: 488 DLFLSMEDN 496



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 107/230 (46%), Gaps = 14/230 (6%)

Query: 13  EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG---VAADTRTY 69
           E AL+++ E+L +GI   +   N     +   +    A   F+ M R G   V     TY
Sbjct: 35  EDALDVFDELLRRGIGAPIRSLNGALADVARDNPAA-AVSRFNRMARAGASMVTPTVHTY 93

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLEIALEL-FHS 126
            I I   C  G +   +       ++K    ++   ++ L+ GLC   R + A+++    
Sbjct: 94  GILIGCCCSAGRL--DLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRG 151

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA--PNVITFGTLIHGFIRI 184
           +     V +V +++I++ GL ++ +  +A +L   M ++     PNV+++ T+I G ++ 
Sbjct: 152 MTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKG 211

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
            +P K      +M ++ ++P+  I S ++  L K +    ++    VH+R
Sbjct: 212 GDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAM---EVHDR 258



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI    K  +++ A+ ++S+M  +G+KP+ V ++TL  G  +I ++E A  LF EM  +G
Sbjct: 379 LIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNG 438

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELF 89
           V+ +  TY I + GL + G    + E +
Sbjct: 439 VSPNFITYNIMLQGLFRTGRTATAKEFY 466



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LINGYCK   +E AL L+ EM+S G+ P+ + +N +  GLF   +   A + + ++ + G
Sbjct: 414 LINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 1/217 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL NGYC  K    AL +  EM+ +GI+P +V +NT+  G F  +Q++ A++ + EM++ 
Sbjct: 213 ILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKR 272

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  TYT  I G    G + ++  +F  +       ++  Y+ LI  LCK   +E A
Sbjct: 273 KCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENA 332

Query: 121 LELFHSLPR-GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           + +F  + R GV V +VVTY+++I GL + G M++A      M E+ +   V T+  +I 
Sbjct: 333 VVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIR 392

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            F    E  K +E+  KM + + +P+    ++++  +
Sbjct: 393 YFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAM 429



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 2/213 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++  CK+K +E A +L   + S+  +PD V +N L  G   I +   A ++  EM + G
Sbjct: 180 LLDILCKSKRVETAHSLLKTLTSR-FRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRG 238

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +     TY   + G  ++  I E+ E +  ++  KCE+D+  Y+ +I G   +G ++ A 
Sbjct: 239 IEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAK 298

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIHG 180
            +FH + +  +V +V TY+ +I  L     ++ A  +F +M  E    PNV+T+  +I G
Sbjct: 299 RVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRG 358

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
              + +  + +  + +M E  +       ++V+
Sbjct: 359 LCHVGDMERALGFMERMGEHGLRACVQTYNVVI 391



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 95/187 (50%), Gaps = 1/187 (0%)

Query: 49  RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108
           RA + F  M   G+  D  ++   +D LCK+  +  +  L +TL   +   D   Y+ L 
Sbjct: 157 RAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTL-TSRFRPDTVTYNILA 215

Query: 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           +G C   R  +AL +   + +  +   +VTY+ M+ G +   Q+ +A + +L+M++    
Sbjct: 216 NGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCE 275

Query: 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228
            +V+T+ T+IHGF    +  K   + H+M ++ V+P+ +  + ++ +L K +   N++  
Sbjct: 276 IDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVV 335

Query: 229 FTVHERQ 235
           F    R+
Sbjct: 336 FEEMARE 342



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 4/185 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+    +++ A  ++ EM+ +G+ P+V  +N L   L +   VE A  +F+EM R+G
Sbjct: 284 VIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREG 343

Query: 62  VA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           V   +  TY + I GLC  G +  ++     +        +Q Y+ +I   C +G +E A
Sbjct: 344 VCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKA 403

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK---AHDLFLDMEENAVAPNVITFGTL 177
           LE+F  +  G  + ++ TY+++I  ++   + +    A  L +DM +    P   TF  +
Sbjct: 404 LEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRV 463

Query: 178 IHGFI 182
           ++G +
Sbjct: 464 LNGLV 468


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 107/216 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LING CK + +  A +L  EM   G+ P V   NTL        Q+E+ F +  +MQ+ G
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 469

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           + +D  ++   +   CKNG I E+V +   +       + Q Y+ +ID   +SG  E AL
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAL 529

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L   +    + A +VTY++++ GL    Q+D+A +L   +    + P+V+++ T+I   
Sbjct: 530 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 589

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
               +  K +ELL +M +  + P       +V  LA
Sbjct: 590 CNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALA 625



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G  ++ +   AL ++ EM+  G+ P+ + +NT+  G  +   +E  F+L D+M  D
Sbjct: 199 VVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHD 258

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +  TY + + GLC+ G + E+  L   +       D   YS L DGL ++G  +  
Sbjct: 259 GPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTM 318

Query: 121 LELF-HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L LF  SL +GV++    T SI+++GL  DG++ KA  +F  +    + P  + + TLI+
Sbjct: 319 LSLFAESLKKGVMLG-AYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLIN 377

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
           G+ ++ +      +  +MK +++ PD    + +++ L K E+
Sbjct: 378 GYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 39/255 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G+ K  ++E    L  +ML  G KP+VV +N L  GL    +++    L DEM    
Sbjct: 235 MIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHS 294

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLEI 119
           +  D  TY+I  DGL + G     + LF     LK  + + AY+C  L++GLCK G++  
Sbjct: 295 MLPDGFTYSILFDGLTRTGESQTMLSLF--AESLKKGVMLGAYTCSILLNGLCKDGKVAK 352

Query: 120 ALELFHSLPRGVLVA-----------------------------------DVVTYSIMIH 144
           A ++F  L    LV                                    D +TY+ +I+
Sbjct: 353 AKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
           GL     + KA DL ++ME++ V P+V TF TLI  +    +  K   +L  M++K +  
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 205 DASIVSIVVDLLAKN 219
           D      VV    KN
Sbjct: 473 DVISFGSVVKAFCKN 487



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++  +CKN +I  A+ +  +M+ K + P+  ++N++     E    E+A  L ++M+  G
Sbjct: 480 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSG 539

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+A   TY + + GLC++  I E+ EL  TLR      D+ +Y+ +I   C  G  + AL
Sbjct: 540 VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKAL 599

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL   + +  +   + T   ++  L + G++     L+  M    V P+   +G ++  +
Sbjct: 600 ELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
           +R    SKV  L  +M EK +  D
Sbjct: 660 VRCENDSKVASLKKEMSEKGIAFD 683



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 110/210 (52%), Gaps = 2/210 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+NG CK+ ++  A  ++  ++  G+ P  VI+NTL  G  ++  +  AF +F++M+  
Sbjct: 339 ILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSR 398

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +  D  TY   I+GLCK   + ++ +L   +     +  ++ ++ LID    +G+LE  
Sbjct: 399 HIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKC 458

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   + +  + +DV+++  ++     +G++ +A  +  DM    VAPN   + ++I  
Sbjct: 459 FTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDA 518

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           +I   +  + + L+ KMK   V   ASIV+
Sbjct: 519 YIESGDTEQALLLVEKMKNSGV--SASIVT 546



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 35/249 (14%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++G C+   ++    L  EM S  + PD   ++ LF GL    + +    LF E  + 
Sbjct: 269 VLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKK 328

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELF-------------------------RTLRIL 95
           GV     T +I ++GLCK+G + ++ ++F                         R LR  
Sbjct: 329 GVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGA 388

Query: 96  KC----------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
            C            D   Y+ LI+GLCK   +  A +L   + +  +   V T++ +I  
Sbjct: 389 FCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDA 448

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               GQ++K   +  DM++  +  +VI+FG+++  F +  +  + + +L  M  K+V P+
Sbjct: 449 YGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPN 508

Query: 206 ASIVSIVVD 214
           A + + ++D
Sbjct: 509 AQVYNSIID 517



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 30  DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
           ++++ + LF+G      V  AF L   +   G   DT  +   +      G +  ++ + 
Sbjct: 126 NLLLESLLFVGRHA--DVRAAFGL---LVAAGARPDTFAWNKVVQACVAAGDLDVALAML 180

Query: 90  RTLRILKCE----LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           R  R+ + E     D  +Y+ +I GL +SG+   AL++F  +    +  + +TY+ MI G
Sbjct: 181 R--RMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
               G ++    L   M  +   PNV+T+  L+ G  R     +   L+ +M   +++PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD 298

Query: 206 ASIVSIVVDLLAKNEISLNSLPSFT 230
               SI+ D L +   S   L  F 
Sbjct: 299 GFTYSILFDGLTRTGESQTMLSLFA 323



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 52/110 (47%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C++ +I+ A  L   + ++G++PDVV +NT+          ++A +L  EM + 
Sbjct: 549 LLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKY 608

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110
           G+    RT    +  L   G + +   L++ +     E     Y  ++D 
Sbjct: 609 GIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDA 658


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I I+ + K+ E   A+  + +M +KGI P++V  N     L E+ ++  A  +F+ ++ +
Sbjct: 442 IFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLREN 501

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A D+ TY + +    K G + E+V L   +    CE D+   + LID L K+GR++ A
Sbjct: 502 GLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEA 561

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++F  +    L   VVTY+ ++ GL  +G++ KA +LF  M E   +PN I+F TL+  
Sbjct: 562 WQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDC 621

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEIS 222
           F + +E    +++  KM   +  PD  +  +++  L+ +N+++
Sbjct: 622 FCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVN 664



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+   CK+K    A  ++ +   K GI P +  +N L   L E+H  E+A+ LF +M+  
Sbjct: 758 LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A D  T+ + +    K+G I E  EL++ +   +C+ D   Y+ +I  L KS  L+ A
Sbjct: 818 GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+ F+ L          TY  +I GL   G++++A  LF +M +    PN   F  LI+G
Sbjct: 878 LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILING 937

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
           + +I +     +L  +M  + + PD    +I+VD L 
Sbjct: 938 YGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLC 974



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 124/276 (44%), Gaps = 38/276 (13%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++  CK ++ + A   +  M  +GI P++  +NTL  GL    ++E A KL   M+  
Sbjct: 372 ILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESV 431

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV     TY IFID   K+G   ++VE F  ++      +I A +  +  L + GRL  A
Sbjct: 432 GVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREA 491

Query: 121 LELFHSLPRGVLVADVVTYSIM-----------------------------------IHG 145
             +F+ L    L  D VTY++M                                   I  
Sbjct: 492 KTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDS 551

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           LY  G++D+A  +F  M++  ++P V+T+ TL+ G  +     K IEL   M EK   P+
Sbjct: 552 LYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPN 611

Query: 206 ASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
               + ++D   KN   E++L      TV + + +V
Sbjct: 612 TISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDV 647



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 106/204 (51%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            LI+G  K   +E A+ L+ EM   G KP+  I N L  G  +I   E A +LF  M  +G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YTI +D LC  G + E++  F  L+    + D  AY+ +I+GL KS R+E AL
Sbjct: 959  IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEAL 1018

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             L++ +    +V D+ TY+ ++  L   G +++A  ++ +++   + P+V T+  LI G+
Sbjct: 1019 ALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078

Query: 182  IRINEPSKVIELLHKMKEKNVMPD 205
                 P     +   M      P+
Sbjct: 1079 SLSENPEHAYTVYKNMMVDGCNPN 1102



 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 114/193 (59%), Gaps = 1/193 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++  Y K  +++ A+NL SEM+  G +PDV++ N+L   L++  +V+ A+++FD M+  
Sbjct: 512 MMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++    TY   + GL K G + +++ELF ++   KC  +  +++ L+D  CK+  +E+A
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++F  +       DV+TY+ +I+GL  + +++ A   F  +++ ++ P+ +T  TL+ G
Sbjct: 632 LKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK-SMHPDHVTICTLLPG 690

Query: 181 FIRINEPSKVIEL 193
            ++  +    I +
Sbjct: 691 LVKCGQIGDAISI 703



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 40/264 (15%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++ +G+C       AL +Y  M+S+G+KP +  ++ L + L +    E    L  EM+  
Sbjct: 202 LIQSGFCGE-----ALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL 256

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  T+TI I  L + G I E+ E+FR +    C  D+  Y+ LID LC +G+LE A
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 121 LELFHSL------PRGVL-----------------------------VADVVTYSIMIHG 145
            ELF  +      P  V+                             + DVVT++I++  
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDV 376

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L      D+A   F  M +  + PN+ T+ TLI G +R       ++LL  M+   V P 
Sbjct: 377 LCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPT 436

Query: 206 ASIVSIVVDLLAKNEISLNSLPSF 229
           A   +I +D   K+  +  ++ +F
Sbjct: 437 AYTYNIFIDYFGKSGETGKAVETF 460



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 103/198 (52%)

Query: 8    KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
            K+ +I     LY EM+S+  KPD + +N +   L + + +++A   F ++         R
Sbjct: 835  KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR 894

Query: 68   TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
            TY   IDGL K G + E++ LF  +    C+ +   ++ LI+G  K G  E A +LF  +
Sbjct: 895  TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954

Query: 128  PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                +  D+ +Y+I++  L   G++D+A   F +++   + P+ I +  +I+G  +    
Sbjct: 955  VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRM 1014

Query: 188  SKVIELLHKMKEKNVMPD 205
             + + L ++M+ + ++PD
Sbjct: 1015 EEALALYNEMRNRGIVPD 1032



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI+  C   ++E A  L+ +M + G KPD VI+ TL     +   ++   + + +M+ D
Sbjct: 302 VLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEAD 361

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+TI +D LCK     E+   F  +R      ++  Y+ LI GL ++GR+E A
Sbjct: 362 GYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDA 421

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L  ++    +     TY+I I      G+  KA + F  M+   + PN++     ++ 
Sbjct: 422 LKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              +    +   + + ++E  + PD+   ++++   +K
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSK 519



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 101/201 (50%)

Query: 18  LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
            +S+M + G  PDVV    L   L +    + AF  FD M++ G+  +  TY   I GL 
Sbjct: 354 FWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLL 413

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
           + G I ++++L  T+  +  +     Y+  ID   KSG    A+E F  +    +V ++V
Sbjct: 414 RAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIV 473

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
             +  ++ L   G++ +A  +F  + EN +AP+ +T+  ++  + ++ +  + + LL +M
Sbjct: 474 ACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533

Query: 198 KEKNVMPDASIVSIVVDLLAK 218
                 PD  +V+ ++D L K
Sbjct: 534 IRNGCEPDVIVVNSLIDSLYK 554



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 98/178 (55%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            I+I+   K+  ++ AL+ + +++S   +P    +  L  GL ++ ++E A +LF+EM   
Sbjct: 863  IVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G   +   + I I+G  K G    + +LF+ +       D+++Y+ L+D LC +GR++ A
Sbjct: 923  GCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEA 982

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            L  F+ L    L  D + Y+ +I+GL    +M++A  L+ +M    + P++ T+ +L+
Sbjct: 983  LYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLM 1040



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 38/255 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++ +CKN E+E AL ++S+M     KPDV+ +NT+  GL + ++V  AF  F ++++  
Sbjct: 618 LLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS- 676

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVEL---------FRTLR----------ILKCELD-- 100
           +  D  T    + GL K G I +++ +         FR  R          +++ E+D  
Sbjct: 677 MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKA 736

Query: 101 -IQAYSCLIDG--------------LCKSGRLEIALELFHSLPRGVLVA-DVVTYSIMIH 144
            I A   +++G              LCK  R   A ++F    + + ++  + +Y+ +I 
Sbjct: 737 IIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIG 796

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L      +KA DLF DM+    AP+  TF  L+    +  + +++ EL  +M  +   P
Sbjct: 797 ELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKP 856

Query: 205 DASIVSIVVDLLAKN 219
           DA   +IV+  LAK+
Sbjct: 857 DAITYNIVISSLAKS 871



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            ILINGY K  + E A  L+  M+++GI+PD+  +  L   L    +V+ A   F+E++  
Sbjct: 933  ILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKST 992

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  D   Y   I+GL K+  + E++ L+  +R      D+  Y+ L+  L  +G +E A
Sbjct: 993  GLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQA 1052

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
              ++  L    L  DV TY+ +I G       + A+ ++ +M  +   PN+ T+  L
Sbjct: 1053 KRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 98/204 (48%)

Query: 11  EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
           ++E    ++  M  K I+ D+  + T+F  L     + +   + ++M++ G   +  +Y 
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 71  IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
             I  L ++G+  E++E++R +     +  ++ YS L+  L K    E+ + L   +   
Sbjct: 197 GLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL 256

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
            L  +V T++I I  L   G++D+A+++F  M++    P+++T+  LI       +    
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 191 IELLHKMKEKNVMPDASIVSIVVD 214
            EL  KMK     PD  I   ++D
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLD 340



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 5/192 (2%)

Query: 31  VVIHNT----LFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
            V+H T      +    +H +VE    +F+ MQ+  +  D  TY      L   G + + 
Sbjct: 117 TVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQM 176

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
             +   +R     L+  +Y+ LI  L +SG    ALE++  +    L   + TYS ++  
Sbjct: 177 TTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVA 236

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L      +    L  +ME+  + PNV TF   I    R  +  +  E+  +M ++   PD
Sbjct: 237 LGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPD 296

Query: 206 ASIVSIVVDLLA 217
               ++++D L 
Sbjct: 297 LVTYTVLIDALC 308


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 114/220 (51%), Gaps = 2/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+   ++ AL L   M   G  PD +  N L  GL  + QV +  ++   +QRD
Sbjct: 87  VVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRD 146

Query: 61  GVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           GV   +  TYT  I G CK G + ++  ++  +       +   Y+ LI+G  K+  +E 
Sbjct: 147 GVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMES 206

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ ++  L       DVVT++ +I G    GQ+D A  ++++M ++ + PNV TF  +IH
Sbjct: 207 AVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIH 266

Query: 180 GFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAK 218
                N  ++ + LL ++  + +++P   I + ++D+L K
Sbjct: 267 SLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCK 306



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 116/227 (51%), Gaps = 2/227 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+N    +   + A+ L+   +  G+  PDV   N +  G+  +  +++A +L + M   
Sbjct: 52  LLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEF 111

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEI 119
           G + DT T  I +DGLC+   + +  E+ R L R   C  ++  Y+ +I G CK+GR++ 
Sbjct: 112 GCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKD 171

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +++ + +     + VTY+++I+G      M+ A  ++  +  ++  P+V+TF +LI 
Sbjct: 172 AFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLID 231

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           G+ R  +    + +  +M + ++ P+    SI++  L     S  +L
Sbjct: 232 GYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEAL 278



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 5/225 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK   ++ A ++Y++ML  G +P+ V +N L  G  +   +E A +++ ++    
Sbjct: 159 VISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHS 218

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   IDG C+ G + +++ ++  +     + ++  +S +I  LC   R   AL
Sbjct: 219 CPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEAL 278

Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L   L  R  +V     Y+ +I  L   G++D+A+ +  DMEE    P+  T+  LI G
Sbjct: 279 SLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIG 338

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD----ASIVSIVVDLLAKNEI 221
                   + + L HKM E    PD     S +S V+     NE+
Sbjct: 339 HCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEV 383



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 1/168 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
           LI+GYC+  +++ A+ ++ EM    I+P+V   + +   L   ++   A  L  E+  R 
Sbjct: 229 LIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRA 288

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +   T  Y   ID LCK G + E+  +   +    C  D   Y+ LI G C  GR+  A
Sbjct: 289 DIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEA 348

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
           + LFH +       D +T +  I  +   G  ++ H + L    +A A
Sbjct: 349 VTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQIMLIASGHASA 396



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 72  FIDGLCKN-GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR- 129
           F+ G C N G +  +  L        C ++  AY+ L++ L   GR + A+ LF S  + 
Sbjct: 16  FVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALFESWIQD 75

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
           G+   DV +++++I G+   G + KA +L   M E   +P+ IT   L+ G  R+ + +K
Sbjct: 76  GLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNK 135

Query: 190 VIELLHKMKEKNV-MPDASIVSIVVDLLAK 218
             E+L +++   V MP+    + V+    K
Sbjct: 136 GHEVLRRLQRDGVCMPNVVTYTSVISGYCK 165


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 106/206 (51%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            L++G  K   IE A NL++EML  G K +  I+N L  G       E+   LF +M   G
Sbjct: 866  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 925

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +  D ++YTI ID LCK G + + +  FR L  +  E D+  Y+ LIDGL KS RLE A+
Sbjct: 926  INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 985

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
             LF+ + +  +V ++ TY+ +I  L   G+  +A  ++ ++      PNV T+  LI G+
Sbjct: 986  SLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1045

Query: 182  IRINEPSKVIELLHKMKEKNVMPDAS 207
                          +M     +P++S
Sbjct: 1046 SVSGSTDSAYAAYGRMIVGGCLPNSS 1071



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           + IN Y K+ E   A+  Y  M SKGI PDVV  N +  GL +  ++  A ++F E++  
Sbjct: 410 LFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM 469

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV+ DT TYT+ I    K     E+V++F  +    C  D+ A + LID L K+GR + A
Sbjct: 470 GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEA 529

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +F+ L    L     TY+ ++ GL  +G++ +   L  +M  +   PN+IT+ T++  
Sbjct: 530 WRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDC 589

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             +    +  +++L+ M  K  +PD S  + V+  L K E
Sbjct: 590 LCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE 629



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 110/204 (53%)

Query: 2    LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
            +I+G  K++ +E A++LY  ++S+G  P    +  L  GL +  ++E A  LF+EM   G
Sbjct: 831  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 890

Query: 62   VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              A+   Y I ++G    G   +   LF+ +       DI++Y+ +ID LCK+G+L   L
Sbjct: 891  CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGL 950

Query: 122  ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
              F  L    L  D++TY+++I GL    ++++A  LF +M++  + PN+ T+ +LI   
Sbjct: 951  TYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHL 1010

Query: 182  IRINEPSKVIELLHKMKEKNVMPD 205
             +  + ++  ++  ++  K   P+
Sbjct: 1011 GKAGKAAEAGKMYEELLTKGWKPN 1034



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 104/203 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+  C+   +  AL ++ EM  KGI P+   +N+L  G  +  +   A +LF  M   G
Sbjct: 341 VIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHG 400

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  T+ +FI+   K+G  +++++ +  ++      D+ A + ++ GL KSGRL +A 
Sbjct: 401 PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAK 460

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            +FH L    +  D +TY++MI       + D+A  +F DM EN   P+V+   +LI   
Sbjct: 461 RVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTL 520

Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
            +     +   + +++KE N+ P
Sbjct: 521 YKAGRGDEAWRIFYQLKEMNLEP 543



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 104/217 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI   CK K+   A  L  +  S G+     ++N+L  GL + + ++ A  LF EM+  G
Sbjct: 726 LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 785

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY + +D + K+  I E +++   +     E     Y+ +I GL KS RLE A+
Sbjct: 786 CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 845

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L+++L          TY  ++ GL   G+++ A +LF +M E     N   +  L++G 
Sbjct: 846 DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 905

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  KV  L   M ++ + PD    +I++D L K
Sbjct: 906 RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCK 942



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L++   K+  IE  L +  EM  KG +   V +NT+  GL +  ++E+A  L+  +   
Sbjct: 795 LLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ 854

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G +    TY   +DGL K G I ++  LF  +    C+ +   Y+ L++G   +G  E  
Sbjct: 855 GFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKV 914

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             LF  +    +  D+ +Y+I+I  L   GQ++     F  + E  + P++IT+  LI G
Sbjct: 915 CHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG 974

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
             +     + + L ++M++K ++P+
Sbjct: 975 LGKSKRLEEAVSLFNEMQKKGIVPN 999



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 105/212 (49%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           + K  + A  + ++M ++G KPDV+ H  L   L +  ++  A  +F +M++     D  
Sbjct: 242 QAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRV 301

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY   +D    NG     +E++  ++      ++ AY+ +ID LC+ GR+  ALE+F  +
Sbjct: 302 TYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 361

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +  +V +  +Y+ +I G     +   A +LF  M+ +   PN  T    I+ + +  E 
Sbjct: 362 KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGES 421

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            K I+    MK K ++PD    + V+  LAK+
Sbjct: 422 IKAIQRYELMKSKGIVPDVVAGNAVLFGLAKS 453



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 115/229 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+  + K +++E  L L  EM + G+KP+V  +      L +  + + A+++  +M+ +
Sbjct: 200 VLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENE 259

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+T+ I  LC  G I ++ ++F  ++    + D   Y  L+D    +G  +  
Sbjct: 260 GCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSV 319

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E+++++       +VV Y+ +I  L   G++ +A ++F +M++  + P   ++ +LI G
Sbjct: 320 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 379

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
           F++ +     +EL   M      P+     + ++   K+  S+ ++  +
Sbjct: 380 FLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRY 428



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G      I+ A  L++EM   G  PD   +N L   + +  ++E   K+ +EM R G
Sbjct: 761 LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 820

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
             +   TY   I GL K+  + ++++L+  L           Y  L+DGL K+GR+E A 
Sbjct: 821 YESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAE 880

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF+ +      A+   Y+I+++G    G  +K   LF DM +  + P++ ++  +I   
Sbjct: 881 NLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTL 940

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +  + +  +    ++ E  + PD    ++++D L K++
Sbjct: 941 CKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSK 979



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 91/191 (47%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           AL +Y  M+  G+ P V  ++ L +   +   VE    L  EM+  GV  +  +YTI I 
Sbjct: 179 ALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIR 238

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
            L +     E+  +   +    C+ D+  ++ LI  LC +GR+  A ++F  + +     
Sbjct: 239 VLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKP 298

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D VTY  ++    ++G      +++  M+ +    NV+ +  +I    ++    + +E+ 
Sbjct: 299 DRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMF 358

Query: 195 HKMKEKNVMPD 205
            +MK+K ++P+
Sbjct: 359 DEMKQKGIVPE 369



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C    I  A +++ +M     KPD V + TL     +    +   ++++ M+ D
Sbjct: 270 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKAD 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   +   YT  ID LC+ G + E++E+F  ++      +  +Y+ LI G  K+ R   A
Sbjct: 330 GYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDA 389

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LELF  +       +  T+ + I+     G+  KA   +  M+   + P+V+    ++ G
Sbjct: 390 LELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFG 449

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +         + H++K   V PD    ++++   +K
Sbjct: 450 LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSK 487



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I    K  + + A+ ++ +M+     PDV+  N+L   L++  + + A+++F +++  
Sbjct: 480 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEM 539

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            +     TY   + GL + G + E + L   +       ++  Y+ ++D LCK+G +  A
Sbjct: 540 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 599

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L++ +S+     + D+ +Y+ +I+GL  + + ++A  +F  M++  + P+  T  T++  
Sbjct: 600 LDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKK-VLIPDYATLCTILPS 658

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
           F++I     + E LH +K+  + P +
Sbjct: 659 FVKI---GLMKEALHIIKDYFLQPGS 681



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 100/214 (46%), Gaps = 1/214 (0%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           G  K+  +  A  ++ E+ + G+ PD + +  +     +  + + A K+F +M  +    
Sbjct: 449 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 508

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D       ID L K G   E+  +F  L+ +  E     Y+ L+ GL + G+++  + L 
Sbjct: 509 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 568

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +       +++TY+ ++  L  +G ++ A D+   M      P++ ++ T+I+G ++ 
Sbjct: 569 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              ++   +  +MK K ++PD + +  ++    K
Sbjct: 629 ERYNEAFSIFCQMK-KVLIPDYATLCTILPSFVK 661



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%)

Query: 1    ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
            IL+NG+      E   +L+ +M+ +GI PD+  +  +   L +  Q+      F ++   
Sbjct: 900  ILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEM 959

Query: 61   GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            G+  D  TY + IDGL K+  + E+V LF  ++      ++  Y+ LI  L K+G+   A
Sbjct: 960  GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEA 1019

Query: 121  LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174
             +++  L       +V TY+ +I G    G  D A+  +  M      PN  T+
Sbjct: 1020 GKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTY 1073



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G  K   IE ++     + S GI  D      L   L +  +   A +L  + +  G
Sbjct: 691 LMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFG 750

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V+  T  Y   I GL     I  +  LF  ++ L C  D   Y+ L+D + KS R+E  L
Sbjct: 751 VSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEML 810

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + R    +  VTY+ +I GL    ++++A DL+ ++     +P   T+G L+ G 
Sbjct: 811 KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGL 870

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           ++         L ++M E     + +I +I+++
Sbjct: 871 LKAGRIEDAENLFNEMLEYGCKANCTIYNILLN 903



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 90/197 (45%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M   GI  +   +N L   L +      A +++  M  DGV    RTY++ +    K   
Sbjct: 151 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 210

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
           +   + L R +     + ++ +Y+  I  L ++ R + A  +   +       DV+T+++
Sbjct: 211 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 270

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I  L + G++  A D+F  M+++   P+ +T+ TL+  F    +   V+E+ + MK   
Sbjct: 271 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 330

Query: 202 VMPDASIVSIVVDLLAK 218
              +    + V+D L +
Sbjct: 331 YNDNVVAYTAVIDALCQ 347



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 82/193 (42%)

Query: 27  IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
           +K +V     +F GL     +  A      M+  G+  +  TY   +  L K+G+  E++
Sbjct: 121 VKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREAL 180

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
           E++R + +      ++ YS L+    K   +E  L L   +    +  +V +Y+I I  L
Sbjct: 181 EVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVL 240

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
               + D+A+ +   ME     P+VIT   LI         S   ++  KMK+ +  PD 
Sbjct: 241 GQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDR 300

Query: 207 SIVSIVVDLLAKN 219
                ++D    N
Sbjct: 301 VTYITLLDKFGDN 313



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 2/214 (0%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           CKN  +  AL++   M +KG  PD+  +NT+  GL +  +   AF +F +M++  +  D 
Sbjct: 591 CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDY 649

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFH 125
            T    +    K G + E++ + +   +    + D  +   L++G+ K   +E ++E   
Sbjct: 650 ATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAE 709

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
            +    +  D      +I  L    +  +AH+L    +   V+     + +LI G +  N
Sbjct: 710 IIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDEN 769

Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
                  L  +MKE    PD    ++++D + K+
Sbjct: 770 LIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKS 803



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 82/196 (41%)

Query: 23  LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82
           L  G K D    ++L  G+ +   +E++ +  + +   G+  D       I  LCK    
Sbjct: 677 LQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKA 736

Query: 83  VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142
           +E+ EL +  +     L    Y+ LI GL     ++IA  LF  +       D  TY+++
Sbjct: 737 LEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLL 796

Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
           +  +    ++++   +  +M         +T+ T+I G ++     + I+L + +  +  
Sbjct: 797 LDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGF 856

Query: 203 MPDASIVSIVVDLLAK 218
            P       ++D L K
Sbjct: 857 SPTPCTYGPLLDGLLK 872



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%)

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           ++FD MQR  V A+  T+     GL   G +  +      ++     L+   Y+ L+  L
Sbjct: 111 EVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFL 170

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            KSG    ALE++  +    +V  V TYS+++        ++    L  +ME + V PNV
Sbjct: 171 VKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNV 230

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
            ++   I    +     +   +L KM+ +   PD    ++++ +L
Sbjct: 231 YSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 275



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 75/161 (46%)

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
           ++  VA  T +    ++ +  +G + +  E+F  ++    + ++  ++ +  GL   G L
Sbjct: 82  RKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGL 141

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
             A      +    +V +  TY+ +++ L   G   +A +++  M  + V P+V T+  L
Sbjct: 142 RSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVL 201

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +  F +  +   V+ LL +M+   V P+    +I + +L +
Sbjct: 202 MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQ 242


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 99/211 (46%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K K ++ A  ++ +M   G  PD + +NT+  GL +    + A K+ D M          
Sbjct: 237 KAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEV 296

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
           TY I ++ LCK G +  + ELFR +       +   Y+ LI G  KSGR++ A  LF  +
Sbjct: 297 TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
                  DV+T+++MI GL   G  ++A   F +M      PNV+T+ T+I G  +I   
Sbjct: 357 VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416

Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           +    ++  M      PD+     ++D   K
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 3/209 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+G CK+   E A   + EM+  G KP+VV + T+  GL +I +V  AF++   M   
Sbjct: 370 VMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAH 429

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D+ TY   +DG CK G + E+ +L   L       ++Q YS L+ GLC  G +E  
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENT 489

Query: 121 L-ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           L +LF          D      +I GL   G++D+A  +F  M      P+  T+  LI+
Sbjct: 490 LDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILIN 549

Query: 180 GFIRI--NEPSKVIELLHKMKEKNVMPDA 206
           G  R   N   +   LLH ++    +PDA
Sbjct: 550 GLCRSRENRVERAFALLHDLEMVGYLPDA 578



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+ K+  ++ A +L+ EM+  G +PDV+ H  +  GL +    E+A K F+EM R G
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TYT  I GL K G +  +  + + +    C  D   Y CL+DG CK GRL+ A 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-HDLFLDMEENAVAPNVITFG---TL 177
           +L   L +     ++  YS ++ GL + G ++    DLF   E++  A   +  G   ++
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLF---EQSKAAAENLDPGLCCSI 512

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
           I G  +     +   +  +M  +   PDA+  +I+++ L ++ 
Sbjct: 513 IVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSR 555



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 3/222 (1%)

Query: 1   ILINGYCKNKE--IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
           ILING C+++E  +E A  L  ++   G  PD V +  L IGL +I +V+RA K+ +E  
Sbjct: 546 ILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEAS 605

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
             G  AD   YT    GLC  G +  +V LF+ +       D  AY C+I+GL K  +LE
Sbjct: 606 SRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLE 665

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTL 177
            A + F  +        V TY+ ++  L + G +D+A   F  M     +  +V+ +  L
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDAL 725

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           IHGF +  +    ++L   M  +  +P A   + + D L ++
Sbjct: 726 IHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRS 767



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           IL++  CK    E A  ++ EM++ G + PD  +H  +   L +  +V+ A ++F +M++
Sbjct: 194 ILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEK 253

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D   Y   IDGL K G+  E++++   +    C      Y  L++ LCK+G LE 
Sbjct: 254 CGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLER 313

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A ELF  +       + V Y+ +IHG    G+M +A  LF +M E    P+VIT   +I 
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  +     +  +   +M      P+    + ++  L+K
Sbjct: 374 GLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 97/181 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+N  CK   +E A  L+  M + G +P+ VI+ +L  G  +  +++ A  LFDEM   
Sbjct: 300 ILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEA 359

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D  T+T+ IDGLCK+G   ++ + F  +    C+ ++  Y+ +I GL K GR+  A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             +   +       D VTY  ++ G    G++D+A  L  ++++ + +PN+  + +L+ G
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKG 479

Query: 181 F 181
            
Sbjct: 480 L 480



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 109/225 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K    + AL +   ML+K   P  V +  L   L +   +ERA +LF  M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              ++  YT  I G  K+G + E+  LF  +       D+  ++ +IDGLCKSG  E A 
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           + F  + RG    +VVTY+ +I GL   G++  A  +   M  +   P+ +T+  L+ GF
Sbjct: 386 KSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGF 445

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
            ++    +  +LL ++ + +  P+  + S +V  L       N+L
Sbjct: 446 CKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTL 490



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 3/197 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L  G C   +++ A++L+ EM+ +G  PD   +  +  GL +  ++E A K FDEM   G
Sbjct: 619 LCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKG 678

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
                 TYT  +  LC  G + E+   F  + + + EL   +  Y  LI G CK+ +++ 
Sbjct: 679 QKPTVATYTALVQALCHAGNVDEAFHRFEGM-LARGELVGSVMIYDALIHGFCKALKVDA 737

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL+LF  +     V   VT + +  GL   G+ +KA +L  +M      P+  TF  ++ 
Sbjct: 738 ALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILD 797

Query: 180 GFIRINEPSKVIELLHK 196
           G  + +E  K+++L+ +
Sbjct: 798 GLRKSDESGKLLKLVQE 814



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 5/199 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI--HQVERAFKLFDEMQR 59
           +I G CK   ++ A  ++  M+S+G KPD   +N L  GL     ++VERAF L  +++ 
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEM 571

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G   D  TYT    GLCK G +  +V++           D+ AY+ L  GLC  G+++ 
Sbjct: 572 VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDR 631

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A+ LF  + R     D   Y  +I+GL    +++ A   F +M      P V T+  L+ 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 180 GFIRINEPSKVIELLHKMK 198
                     V E  H+ +
Sbjct: 692 ALC---HAGNVDEAFHRFE 707



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI  + + +  + A+  +  M  K  KPD+     L   L +    E+AF++F EM   
Sbjct: 159 ILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAM 218

Query: 61  G-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
           G V  D   +T  +  L K   + E+ E+F  +       D  AY+ +IDGL K+G  + 
Sbjct: 219 GFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQE 278

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           AL++  ++     V   VTY I+++ L   G +++A +LF  M  +   PN + + +LIH
Sbjct: 279 ALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIH 338

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           GF +     +   L  +M E    PD    ++++D L K+
Sbjct: 339 GFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKS 378



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 3/222 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK-LFDEMQRD 60
           L++G+CK   ++ A  L  E+      P++ ++++L  GL +   VE     LF++ +  
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAA 500

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS--GRLE 118
               D       I GLCK G + E+  +F+ +    C+ D   Y+ LI+GLC+S   R+E
Sbjct: 501 AENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVE 560

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A  L H L     + D VTY+ +  GL   G++D+A  +  +        +V+ +  L 
Sbjct: 561 RAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALC 620

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G     +  + + L  +M  +   PDA+    +++ L K +
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGK 662



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 3/218 (1%)

Query: 2   LINGYCKNKEIEGALN-LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           L+ G C    +E  L+ L+ +  +     D  +  ++ +GL +  +++ A ++F  M  +
Sbjct: 476 LVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE 535

Query: 61  GVAADTRTYTIFIDGLCKN--GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           G   D  TY I I+GLC++    +  +  L   L ++    D   Y+ L  GLCK G ++
Sbjct: 536 GCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVD 595

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+++          ADVV Y+ +  GL   GQ+D+A  LF +M     AP+   +  +I
Sbjct: 596 RAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCII 655

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
           +G I+  +     +   +M  K   P  +  + +V  L
Sbjct: 656 NGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQAL 693



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 26  GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
           G + DV  +N L   L       + + + +EM + G+A +T ++ I I    +     ++
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 86  VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLVADVVTYSIMIH 144
           V  F  ++  +C+ D+  +  L+D LCK+G  E A E+FH  +  G +  D   ++ M+ 
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
            L    ++ +A ++F  ME+    P+ I + T+I G  +     + +++L  M  K  +P
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVP 293

Query: 205 DASIVSIVVDLLAK 218
                 I+V+ L K
Sbjct: 294 TEVTYGILVNSLCK 307


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  +   F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++  LF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+  T+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+     P
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYKP 414



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  ++     L + M + G++PDV  ++ L  GL +  +++ A  LFDEM   G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L     L +++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 60/116 (51%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+    K G + +A  +F ++ +  L   VV+++ +++G    G +++   L   M+
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++      L  +M +K ++P+    + ++D   KN
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKN 254


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 116/252 (46%), Gaps = 34/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ--- 58
           LI G+CK++++   L L  E+  +G  PD+V ++T+  GL +  ++  A  +F+EM    
Sbjct: 185 LIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAP 244

Query: 59  -----------------------------RDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
                                         D  A D  TYT  +   CK G + ++ ELF
Sbjct: 245 TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF 304

Query: 90  RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
           + +   K   D+  ++ L+DGLC  GR+E ALEL   + R      + TY+ ++ G    
Sbjct: 305 QQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKA 364

Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM-KEKNVMPDA-S 207
            Q+ KA +L  D       PN +T+  L+ G  R     + ++ L ++  E    P + +
Sbjct: 365 NQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVA 424

Query: 208 IVSIVVDLLAKN 219
           + +I++D L ++
Sbjct: 425 MYAIILDALCRD 436



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 3/218 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +++   C    ++ A  L  EML +G+  + + ++ L  GL +  +++ A  L + M   
Sbjct: 79  VVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAER 138

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G A    TY   I G C+   + E+      +    C  DI  Y+ LI G CKS  +   
Sbjct: 139 GCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRG 198

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL   + R     D+VTYS +I GL   G++  A D+F   EE + AP  IT+ +LI G
Sbjct: 199 LELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLIGG 255

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + R  +  + I LL KM +    PD    + ++    K
Sbjct: 256 YCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCK 293



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 2/219 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI GYC+  +++ A+ L  +M+     PDVV + TL     ++ +++ A++LF +M  + 
Sbjct: 252 LIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANK 311

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++ D  T+T  +DGLC  G + +++EL   +    C   I  Y+C++DG CK+ ++  A 
Sbjct: 312 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAE 371

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF--LDMEENAVAPNVITFGTLIH 179
           EL         V + VTY+I++ G    G+ D+A      L+ E      +V  +  ++ 
Sbjct: 372 ELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILD 431

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
              R       ++   +M ++  +P A+  + VV  L K
Sbjct: 432 ALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCK 470



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 1/218 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I G C+   +  AL +Y +M +    PD + +  L  GL +  ++  A ++  EM   
Sbjct: 10  VVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSA 68

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               D  T T+ +  LC    + ++ EL   +       +   YS L+DGLCK  RL+ A
Sbjct: 69  RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 128

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L  ++        VVTY+ +I G     ++D+AH     M      P++IT+  LI G
Sbjct: 129 VALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGG 188

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F +  +  + +ELL ++  +   PD    S V+D L K
Sbjct: 189 FCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCK 226



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 2/199 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +E AL L  E+  +G  P +  +N +  G  + +QV +A +L  + +  G
Sbjct: 322 LVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRG 381

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRI--LKCELDIQAYSCLIDGLCKSGRLEI 119
              +T TY I + G C+ G   ++++    L      C   +  Y+ ++D LC+ GR + 
Sbjct: 382 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 441

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A++ +  + +   V    T++ ++  L    Q  +AH+L  +M +    P   T   ++ 
Sbjct: 442 AVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVS 501

Query: 180 GFIRINEPSKVIELLHKMK 198
            + R     K  EL  +++
Sbjct: 502 AYCRAGMIQKADELASELR 520



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+++  C++   + A+  Y EM+ +G  P      T+   L + HQ ++A +L +EM + 
Sbjct: 428 IILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKY 487

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94
           G      T    +   C+ G I ++ EL   LR+
Sbjct: 488 GHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521



 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
           +I GLC++GRL  AL ++  +       D +TY+ ++HGL    ++  A  +  +M    
Sbjct: 11  VIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSAR 69

Query: 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
             P+  T   ++      +      EL+ +M  + +  +A   S +VD L K E
Sbjct: 70  HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 123


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 112/212 (52%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK+++++ A+ L+S M+  G+ P+VV +  L  G     Q++ A++L   M+  G
Sbjct: 253 LISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSG 312

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T ++ ID LCK+  + E+  L  +L     +++   Y+ LIDGLCK+GR   A 
Sbjct: 313 LVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAAD 372

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  +L     V D  TYS +I GL    ++ +A  +  DM E  V P+ +T+  +I   
Sbjct: 373 RLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDEL 432

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +R        ++L KM    + PD    +I V
Sbjct: 433 VREVGADGSKKILDKMIAAGIKPDVFTYTIFV 464



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 99/216 (45%)

Query: 5   GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA 64
           GYC+   +  A  L+  M  +G       +  L  GL     V  A  +F  MQ DG A 
Sbjct: 116 GYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAP 175

Query: 65  DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF 124
           D   Y   + GLC  G   E+  L         E ++  Y+ LIDG C  G LE+A+++F
Sbjct: 176 DPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVF 235

Query: 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
             +       +V TY+ +I G     ++D+A  LF  M +  + PNV+T+  LI G    
Sbjct: 236 ERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSD 295

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +      LL  M+   ++P+    S+++D L K+E
Sbjct: 296 GQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHE 331



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 109/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G C    +  A+++++ M + G  PD  ++ T+  GL    +   A  L  +   +G
Sbjct: 148 LLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEG 207

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +   Y   IDG C  G +  +V++F  + +  C  +++ Y+ LI G CKS +L+ A+
Sbjct: 208 FEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAM 267

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  +    LV +VVTY+ +I G  +DGQ+D A+ L   ME + + PN  T   LI   
Sbjct: 268 MLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDAL 327

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +     +   LL  + +K +  +  + + ++D L K
Sbjct: 328 CKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCK 364



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LIN YC   ++  +    S +L  G  PD   + +  +G      +  A +LF  M   G
Sbjct: 78  LINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRG 137

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
                 TYT  + GLC  G + E++ +F  ++   C  D   Y+ ++ GLC +GR   A 
Sbjct: 138 CVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAE 197

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L           +VV Y+ +I G  N G ++ A D+F  M+ N  +PNV T+  LI GF
Sbjct: 198 TLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGF 257

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            +  +  + + L  +M +  ++P+
Sbjct: 258 CKSRKLDRAMMLFSRMVDAGLVPN 281



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 2/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYC   ++E A++++  M   G  P+V  +  L  G  +  +++RA  LF  M   G
Sbjct: 218 LIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAG 277

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  TYT  I G C +G +  +  L +++       +    S LID LCK  R+  A 
Sbjct: 278 LVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQ 337

Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            L  SL  +G+ V ++V Y+ +I GL   G+   A  L   +      P+  T+ +LI G
Sbjct: 338 LLLGSLIQKGIKVNEIV-YTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDG 396

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             R  E S+ + +L  M EK V P     +I++D L +
Sbjct: 397 LCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVR 434



 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++G C       A  L S+ +++G +P+VV++N L  G   +  +E A  +F+ M  +G
Sbjct: 183 MVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNG 242

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            + + RTYT  I G CK+  +  ++ LF  +       ++  Y+ LI G C  G+L+ A 
Sbjct: 243 CSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAY 302

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            L  S+    LV +  T S++I  L    ++ +A  L   + +  +  N I + +LI G 
Sbjct: 303 RLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGL 362

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            +    +    L+  +  +  +PDA   S ++D L + +
Sbjct: 363 CKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQK 401



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%)

Query: 59  RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
           R G A D+  YT F+ G C+ G +  +  LF  + +  C      Y+ L+ GLC +G + 
Sbjct: 100 RAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVR 159

Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
            A+ +F  +       D   Y+ M+HGL   G+  +A  L  D       PNV+ +  LI
Sbjct: 160 EAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALI 219

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            G+  + +    +++  +M      P+    + ++    K+ 
Sbjct: 220 DGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSR 261



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 68/152 (44%)

Query: 63  AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122
           A + RTYT  I+  C  G +  S     +L       D  AY+  + G C++G L  A  
Sbjct: 69  ARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACR 128

Query: 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182
           LF  +P    V    TY+ ++HGL   G + +A  +F  M+ +  AP+   + T++HG  
Sbjct: 129 LFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLC 188

Query: 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
                 +   LL     +   P+  + + ++D
Sbjct: 189 GAGRTREAETLLSDAMAEGFEPNVVVYNALID 220



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 99/263 (37%), Gaps = 55/263 (20%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  YC    +E A ++   M+  G+ P++V +N L  G   +    +AF  F  M  +
Sbjct: 462 IFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVAN 521

Query: 61  GVAADTRTYTIFIDGLCK----NGYIVESVELFRTLRI--------------LKCELDIQ 102
           G   +  +YT+ +  L K    N     SV +++   +              L  E+DI 
Sbjct: 522 GCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDI- 580

Query: 103 AYSCLIDGLCKSGRLEIA-----------------------------------LELFHSL 127
            Y+C +  LC+  RL+ A                                   L    S+
Sbjct: 581 -YNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSM 639

Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
            +   +  + +Y  +I  L  +G +  A  +F DM         I +  LI G ++    
Sbjct: 640 VKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYV 699

Query: 188 SKVIELLHKMKEKNVMPDASIVS 210
           ++   LL  M+EKN  P  ++ +
Sbjct: 700 AECSSLLSVMEEKNYRPSDALYA 722


>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 376

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +ING CK   ++ AL++ + M+  G KP+V ++NTL  GL    + E A ++F EM    
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMH 194

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            +    TY   I+GLCKN    E+  L + L     +  +  YS L+ GLC   ++E AL
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERAL 254

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L++ +       DV  ++I+IHGL + G++  A  L+ DM     APN+++  TL+ GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKIQLALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEIS 222
            +  +    + +  ++    + PD    +I +  L + N IS
Sbjct: 315 YKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRIS 356



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 34/241 (14%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------------ 54
           C++ +I+GA  +Y E++   + PD V++N +  G F + +++  F+L+            
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 55  ---------------DE-------MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
                          DE       M+  G   D+ TY I + G CKNGYI +S+ +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 93  RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
                 LD  AYS +I+GLCK   L+ AL + + + +     +V  Y+ +I+GL    + 
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKF 180

Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           + A  +F +M     +P +IT+ TLI+G  +     +   L+ ++ +K + P     S++
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 213 V 213
           +
Sbjct: 241 M 241



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 107/213 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ G   N +++  ++++  M   G   D + +  L  G  +   ++++  + +  ++ 
Sbjct: 64  IMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQK 123

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G   D   Y+  I+GLCK   +  ++ +   +    C+ ++  Y+ LI+GL  + + E A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDA 183

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + +F  +        ++TY+ +I+GL  +    +A++L  ++ +  + P VIT+  L+ G
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
               ++  + ++L +++  K   PD  + +I++
Sbjct: 244 LCLDHKVERALQLWNQVTSKGFKPDVQMHNILI 276



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +L+ G C + ++E AL L++++ SKG KPDV +HN L  GL  + +++ A  L+ +M R 
Sbjct: 239 MLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKIQLALSLYFDMNRW 298

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLE 118
             A +  ++   ++G  K+G I  ++ ++   RIL+   E DI +Y+  + GLC   R+ 
Sbjct: 299 KCAPNLVSHNTLMEGFYKDGDIRNALVIWA--RILRNGLEPDIISYNITLKGLCSCNRIS 356

Query: 119 IALELFH 125
            A+   H
Sbjct: 357 DAILFLH 363


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 120/225 (53%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL++ + K  EI  A +++  +   G++P VV  NTL  G  ++  +   F+L + MQ  
Sbjct: 141 ILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS 200

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  TY++ I+GLCK   + ++  LF  +       +   ++ LIDG CK+GR+++A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +E++  +    L  D++TY+ +I+GL   G + +A DL  +M    + P+  T+ TLI G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDG 320

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
             +  +     E   +M ++N+  D    + ++  L +   S+++
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CKN  ++ A+ +Y +MLS+ + PD++ +NTL  GL +   +++A  L DEM   G
Sbjct: 247 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  TYT  IDG CK G +  + E  + +      LD  AY+ LI GLC+ GR   A 
Sbjct: 307 LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173
           ++   +    L  ++ TY+++I+     G +     L  +M+ +   P+V+T
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418



 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LING CK  +++ A  L+ EML KG+ P+ V   TL  G  +  +V+ A +++ +M   
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            ++ D  TY   I GLCK G + ++ +L   + +   + D   Y+ LIDG CK G LE A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETA 330

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            E    + +  +  D V Y+ +I GL  +G+   A  +  +M    + P + T+  +I+ 
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
           F +  +     +LL +M+     P
Sbjct: 391 FCKKGDVWXGSKLLKEMQRDGYKP 414



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 109/218 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+NGY K  ++     L + M + G++PDV  ++ L  GL +  +++ A  LFDEM   G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKG 236

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  +  T+T  IDG CKNG +  ++E+++ +       D+  Y+ LI GLCK G L+ A 
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  D  TY+ +I G   +G ++ A +    M +  +  + + +  LI G 
Sbjct: 297 DLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +        ++L +M    + P+    +++++   K 
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%)

Query: 41  LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
           L ++   +  +  ++E    G  A    + I +    K G I  +  +F  +        
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           + +++ L++G  K G L     L +++    +  DV TYS++I+GL  + +MD A+ LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           +M +  + PN +TF TLI G  +       +E+  +M  +++ PD
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 60/116 (51%)

Query: 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
           ++ L+    K G + +A  +F ++ +  L   VV+++ +++G    G +++   L   M+
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            + V P+V T+  LI+G  + ++      L  +M +K ++P+    + ++D   KN
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKN 254


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+ G C+  + + AL L+  ML +G+ P+ V + TL  GLF++    RA  L+D++   G
Sbjct: 283 LLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARG 342

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +      +   I+GLCK G +  + E F+ +  L C+ D   Y  L DG CK G +E A 
Sbjct: 343 INKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAF 402

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++   + +  +   +  Y+ +I GL+   ++ K  DL  +M+   ++PNV+T+G LI G+
Sbjct: 403 KIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGW 462

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                  K      +M  K   P+  I S +V  L +
Sbjct: 463 CDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYR 499



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 2/233 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I + G CK+ ++  A   +  +      PD   + TL  G      V  AF L DEM   
Sbjct: 562 IAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNK 621

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+  +  TY   ++GLCK+GY+  +  LF  L +     ++  Y+ LIDG CKSG    A
Sbjct: 622 GLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREA 681

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L+L   + +  +   ++TYS +I+G      +++A  L  +M+ + V   + TF  L+ G
Sbjct: 682 LDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEG 741

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
            I+  +  K+ + LH M      P A I S     L++   +   L S+T+ E
Sbjct: 742 CIQHGDVKKMSK-LHNMMHM-ACPSAGITSHKQMELSELSNAKEMLDSYTISE 792



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 35/252 (13%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM---- 57
           LI G+C    ++ A + Y EM+ KG  P+V+I + +   L+ + +++ A  L  +M    
Sbjct: 458 LIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFD 517

Query: 58  -------QRDGVAADTR------------------------TYTIFIDGLCKNGYIVESV 86
                    D   AD R                         Y I + GLCK+G + ++ 
Sbjct: 518 LVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDAR 577

Query: 87  ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
             F  L       D   Y  LI G   +G +  A  L   +    LV ++ TY+ +++GL
Sbjct: 578 RFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGL 637

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
              G +D+A  LF  +    + PNV+T+  LI G+ +   P + ++L  KM ++ + P  
Sbjct: 638 CKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSI 697

Query: 207 SIVSIVVDLLAK 218
              S +++   K
Sbjct: 698 ITYSSLINGFCK 709



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 102/204 (50%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L++G  K  +   AL L+ ++L++GI   +   NT+  GL ++ +++ A + F  M+  G
Sbjct: 318 LLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELG 377

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY    DG CK G + E+ ++   +   +    I+ Y+ LI GL  S ++   +
Sbjct: 378 CKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLI 437

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           +L   +    L  +VVTY  +I G  + G++DKA   + +M     APNVI    ++   
Sbjct: 438 DLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSL 497

Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
            R+    +   LL KM + +++ D
Sbjct: 498 YRLGRIDEANMLLQKMVDFDLVLD 521



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 1/219 (0%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
           +LI GYCK  ++E A  +  EM  + G+  D   +  L  G  ++ ++  A ++ DEM +
Sbjct: 141 LLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLK 200

Query: 60  DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
            G+  +       I+G CKNG + E   L   +R L  + D  +Y  L+DG C+ G    
Sbjct: 201 VGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSK 260

Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
           A  +   + R  +   VVTY+ ++ GL   G    A  L+  M +  V PN + + TL+ 
Sbjct: 261 AFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLD 320

Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           G  ++ + S+ + L   +  + +       + +++ L K
Sbjct: 321 GLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCK 359



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 106/215 (49%), Gaps = 1/215 (0%)

Query: 6   YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
           Y +   ++ AL+++  M   G KP +   N+L   L +  +   A  ++D+M+R  +  D
Sbjct: 6   YAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPD 65

Query: 66  TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
             T  I ++  CK G +  +VE  R +  L  EL+  +Y+ L+DG    G +E A  +  
Sbjct: 66  VFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLK 125

Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIHGFIRI 184
            +    ++ + VT +++I G     ++++A  +  +ME E+ V  +   +G LI G+ ++
Sbjct: 126 FMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKV 185

Query: 185 NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +    I +  +M +  +  +  + + +++   KN
Sbjct: 186 GKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKN 220


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ +CK    + A  L +EM   G++P   I+  L    F++  V  A  LF+EM+   
Sbjct: 236 LISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQY 295

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TYT  I GL K G I E+   F  ++   C  D    + +I+ L K+GRL+ A+
Sbjct: 296 CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAM 355

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLY-NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           +LF  +     +  VVTY+ +I  L+ +  +  +    F  M+E+ ++P+  T+  LI G
Sbjct: 356 KLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 415

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           F + N   K + LL +M EK   P  +    ++D L K
Sbjct: 416 FCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ILI+G+CK   +E A+ L  EM  KG  P    + +L   L +  + + A +LF E++ +
Sbjct: 411 ILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 470

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
             ++  R Y + I  L K G + +++ +F  +  L C  D+ AY+ L+ GL ++G L+ A
Sbjct: 471 CGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEA 530

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           L     +     + D+ +Y+I+++GL   G   +A ++  +M+++ V P+V+++ T++  
Sbjct: 531 LSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGA 590

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                   +  +L+ +M       D    S +++ + K
Sbjct: 591 LSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGK 628



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 2/204 (0%)

Query: 18  LYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76
           LY+EM ++G   PD + ++ L     ++ + + A +L +EM+ +G+   T+ YT+ I   
Sbjct: 216 LYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLF 275

Query: 77  CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136
            K   +  ++ LF  +R   C  D+  Y+ LI GL K+GR++ A   F+ + R     D 
Sbjct: 276 FKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDT 335

Query: 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG-FIRINEPSKVIELLH 195
           V  + MI+ L   G++D A  LF +M      P+V+T+ T+I   F   +  S+V     
Sbjct: 336 VVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 395

Query: 196 KMKEKNVMPDASIVSIVVDLLAKN 219
           +MKE  + P +   SI++D   K 
Sbjct: 396 RMKESGISPSSFTYSILIDGFCKT 419



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 71/290 (24%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI  + K  ++ GAL+L+ EM  +  +PDV  +  L  GL +  +++ A+  F EMQR+
Sbjct: 270 MLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQRE 329

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC---------------ELDIQA-- 103
           G   DT      I+ L K G + ++++LF+ +  L+C               E   +A  
Sbjct: 330 GCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASE 389

Query: 104 -------------------YSCLIDGLCKSGRLE-------------------------- 118
                              YS LIDG CK+ R+E                          
Sbjct: 390 VPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID 449

Query: 119 ---------IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
                    +A ELF  L      +    Y++MI  L   G++D A ++F +M +   AP
Sbjct: 450 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAP 509

Query: 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           +V  +  L+ G  R     + +  + +M+E   +PD +  +I+++ LAK 
Sbjct: 510 DVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 559



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 36/252 (14%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRD 60
           +IN   K   ++ A+ L+ EM +    P VV +NT+   LFE   +       F+ M+  
Sbjct: 341 MINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKES 400

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTL------------------------RILK 96
           G++  + TY+I IDG CK   + +++ L   +                          L 
Sbjct: 401 GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLA 460

Query: 97  CEL-----------DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
           CEL             + Y+ +I  L K+GRL+ A+ +F  + +     DV  Y+ ++ G
Sbjct: 461 CELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 520

Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
           L   G +D+A      M+E+   P++ ++  +++G  +   P + +E+L  MK+  V PD
Sbjct: 521 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 580

Query: 206 ASIVSIVVDLLA 217
               + V+  L+
Sbjct: 581 VVSYNTVLGALS 592



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 105/229 (45%), Gaps = 3/229 (1%)

Query: 10  KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADTRT 68
           K +  A+ ++ ++ ++  +P    +N++ I L    Q  +  +L++EM  +G    DT T
Sbjct: 173 KMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMT 232

Query: 69  YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
           Y+  I   CK G    + +L   ++    +   + Y+ LI    K   +  AL LF  + 
Sbjct: 233 YSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMR 292

Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
                 DV TY+ +I GL   G++D+A+  F +M+     P+ +    +I+   +     
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLD 352

Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
             ++L  +M     +P     + ++  L +++   + +PS+   ER +E
Sbjct: 353 DAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW--FERMKE 399


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+GYCK   ++ A  L  + + KG  PD V + +L  GL     VERA +LF+E Q  G
Sbjct: 296 IIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKG 355

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D   Y   + GLC  G I+ ++++   +    C  DIQ Y+ +I+GLCK G +  A 
Sbjct: 356 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 415

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            + +       + DV T++ +I G     ++D A  L   M E  +AP+ IT+ ++++G 
Sbjct: 416 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 475

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +  + ++V E   +M  K   P+    +I+++   ++
Sbjct: 476 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRS 513



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 108/217 (49%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI G CK    + A++    M+++G  PD   +NT+  G  +I  V+ A +L  +    G
Sbjct: 261 LIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKG 320

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  TY   I+GLC  G +  ++ELF   +    + DI  Y+ L+ GLC  G +  AL
Sbjct: 321 FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHAL 380

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++ + +       D+ TY+I+I+GL   G +  A  +  D       P+V TF TLI G+
Sbjct: 381 QVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGY 440

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
            +  +    ++L+ +M E  + PD    + V++ L K
Sbjct: 441 CKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 477



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 98/181 (54%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I+ING CK   I  A  + ++ + KG  PDV   NTL  G  +  +++ A +L + M   
Sbjct: 400 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 459

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G+A DT TY   ++GLCK G + E  E F+ + +  C  +   Y+ LI+  C+S ++E A
Sbjct: 460 GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 519

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            ++   + +  L  D V+++ +I+G   +G ++ A+ LF  +EE   +    TF TLI  
Sbjct: 520 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGA 579

Query: 181 F 181
           F
Sbjct: 580 F 580



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 108/217 (49%), Gaps = 1/217 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +++  CK  ++  A  L  +++ +G+  ++  +N    GL E  ++  A +L D M+   
Sbjct: 192 VLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA 251

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  D  TY   I GLCK     E++   R +    C  D   Y+ +IDG CK   ++ A 
Sbjct: 252 VP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 310

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL         V D VTY  +I+GL  +G +++A +LF + +   + P+++ + +L+ G 
Sbjct: 311 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 370

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
                    ++++++M E+   PD    +IV++ L K
Sbjct: 371 CLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCK 407



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+GYCK  +++ AL L   M   GI PD + +N++  GL +  +V    + F EM   G
Sbjct: 436 LIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG 495

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              +  TY I I+  C++  + E+ ++   +       D  +++ LI G C++G LE A 
Sbjct: 496 CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAY 555

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
            LF  L      A   T++ +I        M  A  +F +M       +  T+  LI G 
Sbjct: 556 LLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGS 615

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
            +     +    L +M +K  +P  S    V++ L  N
Sbjct: 616 CKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVN 653



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I +  +C       AL L   +  +G     V + T+  GL+       A +LFD+M   
Sbjct: 125 IRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHT 180

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  +   +   +  LCK G ++E+  L   +      +++  Y+  I GLC++GRL  A
Sbjct: 181 HVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEA 240

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           + L   + R   V DVVTY+ +I GL       +A      M      P+  T+ T+I G
Sbjct: 241 VRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 299

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221
           + +I+   +  ELL     K  +PD  +  S++  L A+ ++
Sbjct: 300 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 341



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 1/212 (0%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A  L+ +ML   + P++   N +   L +   V  A  L  ++ + G++ +  TY I+I 
Sbjct: 170 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIR 229

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
           GLC+ G + E+V L   +R      D+  Y+ LI GLCK    + A+     +     + 
Sbjct: 230 GLCEAGRLPEAVRLVDGMRAYAVP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLP 288

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
           D  TY+ +I G      + +A +L  D       P+ +T+ +LI+G     +  + +EL 
Sbjct: 289 DDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELF 348

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
           ++ + K + PD  + + +V  L    + L++L
Sbjct: 349 NEAQAKGIKPDIVVYNSLVKGLCLQGLILHAL 380



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 113/246 (45%), Gaps = 17/246 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG CK  ++      + EM+ KG  P+ + +N L       +++E A K+  +M ++G
Sbjct: 471 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 530

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           +  D  ++   I G C+NG +  +  LF+ L           ++ LI        + +A 
Sbjct: 531 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAE 590

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ++F  +      AD  TY ++I G      +D+A+   ++M +    P++ TFG +I+  
Sbjct: 591 KIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 650

Query: 182 IRINEPSKVIELLHKMKEKNVMPD-------------ASIVSIVVDLLAKNEISLNSLPS 228
              +   + + ++H M +  V+P+             A+   +V DL+ K  I   S P+
Sbjct: 651 TVNHRVFQAVGIIHIMVKIGVVPEVVDTILNADKKEIAAPKILVEDLMKKGHI---SYPT 707

Query: 229 FTV-HE 233
           + V HE
Sbjct: 708 YEVLHE 713



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 34/248 (13%)

Query: 3   INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV 62
           I  Y +   +  A++ +  M      P    +N +   L +    ++A K++  M   GV
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 63  AADTRTYTIFIDGLC-------------------------------KNGYIVESVELFRT 91
           + D  T+TI +   C                                +G+  ++ +LF  
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 176

Query: 92  LRILKCELDIQAYSCLIDGLCKSGR-LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
           +       ++ A++ ++  LCK G  LE  L L   + RG+ + ++ TY+I I GL   G
Sbjct: 177 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSI-NLFTYNIWIRGLCEAG 235

Query: 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210
           ++ +A  L   M   AV P+V+T+ TLI G  + + P + +  L +M  +  +PD    +
Sbjct: 236 RLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYN 294

Query: 211 IVVDLLAK 218
            ++D   K
Sbjct: 295 TIIDGYCK 302


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+ Y K K++  A  L+  M++KG  P+V+ +  L  G  +   +E+A +++  M+ D 
Sbjct: 565 LIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDA 624

Query: 62  VAADTR----------------TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
              D                  TY   +DGLCK   + ++ +L  T+ +  CE +   Y 
Sbjct: 625 DIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYD 684

Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
            LIDG CK+ +L+ A E+FH +       +V TYS +I  L+ D ++D    +   M EN
Sbjct: 685 ALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLEN 744

Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
           + APN++ +  +I G  ++ +  +  +L+  M+EK   P+    + ++D   K
Sbjct: 745 SCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGK 797



 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 16/230 (6%)

Query: 7   CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
           C    +E A  L+ EM   G+ PDV  +  L     +   +++A    DEM RDG     
Sbjct: 500 CNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTV 559

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
            TYT  I    K   +  + ELF  +    C  ++  Y+ LIDG CKSG +E A +++  
Sbjct: 560 VTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYAR 619

Query: 127 LPRGVLVAD----------------VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
           +     + D                VVTY  ++ GL    ++  A DL   M  +   PN
Sbjct: 620 MRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPN 679

Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
            I +  LI GF +  +  +  E+ HKM E    P+    S ++D L K++
Sbjct: 680 TIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDK 729



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 105/249 (42%), Gaps = 51/249 (20%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGI----------------KPDVVIHNTLFIGLFEIH 45
           LI+GYCK+  IE A  +Y+ M                     KP+VV +  L  GL + H
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 46  QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL------------- 92
           +V+ A  L + M  DG   +T  Y   IDG CK   + E+ E+F  +             
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYS 719

Query: 93  ----RILK------------------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
               R+ K                  C  +I  Y+ +IDGL K  + + A +L   +   
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
               +VVTY+ MI G    G++DK  +LF +M     APN +T+  LI+         + 
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEA 839

Query: 191 IELLHKMKE 199
             LL +MK+
Sbjct: 840 YALLEEMKQ 848



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 99/182 (54%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           LI+G+CK  +++ A  ++ +M+  G  P+V  +++L   LF+  +++   K+  +M  + 
Sbjct: 686 LIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENS 745

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
            A +   YT  IDGL K     E+ +L   +    C+ ++  Y+ +IDG  K+G+++  L
Sbjct: 746 CAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCL 805

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           ELF  +       + VTY+++I+     G +D+A+ L  +M++     +V ++  +I G+
Sbjct: 806 ELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY 865

Query: 182 IR 183
            R
Sbjct: 866 KR 867



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 1   ILINGYCKNKEIEGALNL------YSEMLSKGI---KPDVVIHNTLFIGLFEIHQVERAF 51
           ILI   C   E+ G +        Y+EMLS G    K +VV       G     + E+A+
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGF---GKFEKAY 474

Query: 52  KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
           K+  EM  +G   DT TY+  I  LC    +  +  LF+ ++      D+  Y+ LID  
Sbjct: 475 KVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF 534

Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
            K+G ++ A      + R      VVTY+ +IH      ++  A++LF  M      PNV
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
           IT+  LI G+ +     K  ++  +M+    +PD  +
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDM 631



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV------ERAFKLFD 55
           L++ YCK+ +   A  L  +M     KP  V++N L   +    ++      E A K ++
Sbjct: 384 LVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443

Query: 56  EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115
           EM   G   +      F   LC  G   ++ ++   +       D   YS +I  LC + 
Sbjct: 444 EMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNAS 503

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
           R+E A  LF  +    +V DV TY+I+I      G + +AH+   +M  +   P V+T+ 
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
           TLIH +++  + S   EL   M  K   P+    + ++D   K+
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 35/227 (15%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G  K  + + A  L   M  KG KP+VV +  +  G  +  +V++  +LF EM   G
Sbjct: 756 MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY----------------- 104
            A +  TYT+ I+  C  G++ E+  L   ++       + +Y                 
Sbjct: 816 CAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGL 875

Query: 105 ----------------SCLIDGLCKSGRLEIALELFHSLPRGVL--VADVVTYSIMIHGL 146
                             LID   K+GRLE+ALEL   +    +   A    Y+ +I+  
Sbjct: 876 LEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSF 935

Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
               ++  A +LF DM  + V P++ TF  L+ G IR+    + ++L
Sbjct: 936 SYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 3/213 (1%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           +LI   C+N     AL     +   G KP  + +N L        +++ A  +  EM   
Sbjct: 211 VLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSEL 270

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           G++ D  T   F   LCK G   E++ L      +    +   Y+ +I GLC++   E A
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVP---NTILYNKMISGLCEASFFEEA 327

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           ++  + +     + +V TY I++ G  N  Q+ +   +   M      P+   F +L+H 
Sbjct: 328 MDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           + + ++ S   +LL KM++    P   + +I++
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 6/226 (2%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+    E A++  + M S    P+V  +  L  G     Q+ R  ++   M  +G
Sbjct: 314 MISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEG 373

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL---- 117
                  +   +   CK+     + +L + +   +C+     Y+ LI  +C  G L    
Sbjct: 374 CYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPV 433

Query: 118 --EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
             E+A + ++ +     V + V        L   G+ +KA+ +  +M  N   P+  T+ 
Sbjct: 434 TFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYS 493

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
            +I      +       L  +MK   V+PD    +I++D  +K  I
Sbjct: 494 EVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 111/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           IL+   CK K I+ A N+  +ML+ G++PDVV +NTL     +  +  +A  +  +M   
Sbjct: 203 ILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNK 262

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  + RT  I + G C+ G + E++ +   +R L    ++  ++ LI G    G  +  
Sbjct: 263 KVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGV 322

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
            +    +    +  DV+T+S +++G  + G+MDK  ++F DM ++ + P++  F  L  G
Sbjct: 323 DKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKG 382

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           F+R  EP K   LL+ M +  V P+  I + ++ 
Sbjct: 383 FVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIIS 416



 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 110/214 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           I++ GYC+   +  AL +   M   GI P++VI N+L  G  +I   +   K    M+  
Sbjct: 273 IIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEES 332

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
           GV  D  T++  ++G    G + +  E+F  +     E DI  +S L  G  ++G    A
Sbjct: 333 GVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKA 392

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             L + + +  +  +VV ++ +I G    G+M+KA  +F  M +  V+PN+ TF TLI G
Sbjct: 393 ESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWG 452

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
           +    +P +  E+L  M+E NV+P+ S + +V +
Sbjct: 453 YGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSE 486



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    + K  +    L SEM   GIKPD ++ N +     E   V+ A ++F +M+  G
Sbjct: 98  LVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESG 157

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
               T T+   I G        ES++L   + R    + + + Y+ L+  LCK   ++ A
Sbjct: 158 CKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEA 217

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
             + H +    +  DVVTY+ +      DG+ +KA  + +DM    V PN  T G ++ G
Sbjct: 218 WNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGG 277

Query: 181 FIRINEPSKVIELLHKMKEKNVMPD 205
           +      ++ + ++++M++  + P+
Sbjct: 278 YCEQGNLAEALRVVYRMRDLGIHPN 302



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 1/155 (0%)

Query: 67  RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
           R+ T  ++ L + G   E+  +F +L           Y+ L+  L +  R +    L   
Sbjct: 58  RSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSE 117

Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
           +    +  D +  + +I+     G + +A ++F  MEE+   P   TF TLI G+  I +
Sbjct: 118 MEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRK 177

Query: 187 PSKVIELLHKM-KEKNVMPDASIVSIVVDLLAKNE 220
           P + ++LL  M +  N+ P+    +I+V  L K +
Sbjct: 178 PEESMKLLELMTRTTNLKPNNRTYNILVGALCKKK 212



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 74/161 (45%), Gaps = 5/161 (3%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           ++NG+     ++    ++ +ML  GI+PD+ + + L  G     +  +A  L + M + G
Sbjct: 344 IMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYG 403

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           V  +   +T  I G C  G + ++ ++F  +  +    +++ +  LI G  ++ +   A 
Sbjct: 404 VRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAE 463

Query: 122 ELFHSLPRGVLVADVVTYSIMIH-----GLYNDGQMDKAHD 157
           E+   +    +V +  T  ++       G+ ND + ++  +
Sbjct: 464 EILQMMEEMNVVPENSTLKLVSEAWRSIGMVNDAKAERTEE 504



 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 52/113 (46%)

Query: 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160
           +++ + L++ L + G+ + A  +F+SL         VTY+ ++  L    +      L  
Sbjct: 57  VRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLS 116

Query: 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
           +MEE  + P+ I    +I+ F       + +E+  KM+E    P  S  + ++
Sbjct: 117 EMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLI 169


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ---VERAFKLFDEM 57
           I+I GYCK   +  AL    +M   G+ P+ V+ N+L  G  +I     VE A  L +E 
Sbjct: 261 IIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEF 320

Query: 58  QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
              G+  D  TY+  ++    +G +    E+F  +   + E DIQAYS L  G  ++G+ 
Sbjct: 321 ---GIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQP 377

Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
           + A  L +S+ +  L A+VV ++ +I G    G+MD A  L+  M E     N+ T+ TL
Sbjct: 378 DKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETL 437

Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
           I G+    +P K  ELL  M+E  V P+ S + +V
Sbjct: 438 IWGYGEAKQPWKAEELLVTMEESGVAPEMSTIELV 472



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 111/219 (50%), Gaps = 8/219 (3%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR- 59
           ILI  +C   E+E A N+  +M++ G++PD+V +NTL     +  + + A +L  +MQ+ 
Sbjct: 189 ILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQY 248

Query: 60  -DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG---LCKSG 115
            + V  + RT  I I G CK G + E++     ++ L    +   ++ LI G   +  + 
Sbjct: 249 NNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTD 308

Query: 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
            +E AL L        +  DVVTYS +++   + G MD   ++F DM +  + P++  + 
Sbjct: 309 GVEEALTLMEEFG---IKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYS 365

Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
            L  G++R  +P K   LL+ M +  +  +  I + ++ 
Sbjct: 366 ILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIIS 404



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           L+    + K      +L S++   G+KPD ++ N +     +  +V  A K+F +M+  G
Sbjct: 84  LVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECG 143

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
               T T+   I G    G   E+++L   + +    + + + Y+ LI   C    LE A
Sbjct: 144 CKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEA 203

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE--NAVAPNVITFGTLI 178
             + H +    +  D+VTY+ +      +G+ D A  L L M++  N V PN  T G +I
Sbjct: 204 WNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIII 263

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
            G+ +    ++ +  L+KMKE  V P+  + + ++
Sbjct: 264 RGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLI 298



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 3/219 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +IN +  + ++  A+ ++ +M   G KP     NTL  G   + +   A KL + M +DG
Sbjct: 119 MINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDG 178

Query: 62  -VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
            V  + RTY I I   C    + E+  +   +     + DI  Y+ L     ++G  + A
Sbjct: 179 NVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNA 238

Query: 121 LELFHSLPR--GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
             L   + +    +  +  T  I+I G   +G M +A      M+E  V PN + F +LI
Sbjct: 239 ERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLI 298

Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            G++ I +   V E L  M+E  + PD    S +++  +
Sbjct: 299 KGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWS 337



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 34/205 (16%)

Query: 15  ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
           A+ +++ +  +G KP ++ + TL   L  + +      L  +++ +GV  D+  +   I+
Sbjct: 62  AVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMIN 121

Query: 75  GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
               +G + E++++FR ++   C+     ++ LI G    GR   A++L           
Sbjct: 122 AFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLE--------- 172

Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
                 +MI     DG                V PN  T+  LI  +   NE  +   ++
Sbjct: 173 ------MMIQ----DGN---------------VKPNERTYNILIQAWCTKNELEEAWNVM 207

Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
           HKM    + PD    + +    A+N
Sbjct: 208 HKMVNSGMQPDIVTYNTLARAFAQN 232



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 70  TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129
           T  +  L + G   E+V +F +L     +  I  Y+ L+  L +  R      L   +  
Sbjct: 47  TKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEE 106

Query: 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189
             +  D + ++ MI+   + G++ +A  +F  M+E    P   TF TLI GF  +  P +
Sbjct: 107 NGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHE 166

Query: 190 VIELLHKM-KEKNVMPDASIVSIVVD-LLAKNEI 221
            ++LL  M ++ NV P+    +I++     KNE+
Sbjct: 167 AMKLLEMMIQDGNVKPNERTYNILIQAWCTKNEL 200



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 43/82 (52%)

Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
           V++ + ++  L   G+  +A  +F  + E    P +IT+ TL+    R+   + +  LL 
Sbjct: 43  VISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLS 102

Query: 196 KMKEKNVMPDASIVSIVVDLLA 217
           K++E  V PD+ + + +++  +
Sbjct: 103 KVEENGVKPDSILFNAMINAFS 124


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 113/218 (51%)

Query: 1   ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
           ++I+  C+  +++ A  L + + S+G KP+ V +NT+  GL  I +   A +L DEM R+
Sbjct: 21  VIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAEELLDEMVRE 80

Query: 61  GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
               +  T  + ++ L + G + +       +    C  ++  Y+ +I G+C+ G ++ A
Sbjct: 81  NCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSA 140

Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
           LEL  ++       D+VTY+ ++ GL +  Q + A +L + M +N   P+ +TF T+I  
Sbjct: 141 LELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISF 200

Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
             +     +  E+  +M EK   P+++  S ++  LAK
Sbjct: 201 LCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAK 238



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 112/216 (51%), Gaps = 1/216 (0%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I+G C+   ++ AL L S M S G KPD+V +NTL  GL    Q E A +L  +M ++ 
Sbjct: 127 VISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQND 186

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
              D  T+   I  LC+ G I+++ E+F+ +    C  +   YS +I GL K+G++E AL
Sbjct: 187 CLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQAL 246

Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
           EL + +       D + Y ++   L  + ++++   +   ++++ ++P  + F T++   
Sbjct: 247 ELLNEMASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVL 305

Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
            R  +    I++L  M     MPD     I+++ L+
Sbjct: 306 CRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLS 341



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 99/208 (47%)

Query: 22  MLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81
           M ++G +P+VV +N +   +     V++A +L + +   G   +T  Y   + GLC    
Sbjct: 7   MRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIER 66

Query: 82  IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
            V++ EL   +    C  +    + +++ L + G L+        + +    A+VVTY+ 
Sbjct: 67  WVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNA 126

Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
           +I G+   G +D A +L  +M+     P+++T+ TL+ G    ++     EL+ KM + +
Sbjct: 127 VISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQND 186

Query: 202 VMPDASIVSIVVDLLAKNEISLNSLPSF 229
            +PD    + ++  L +  + L +   F
Sbjct: 187 CLPDNVTFNTIISFLCQKGLILQAFEVF 214



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 2/202 (0%)

Query: 19  YSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
           Y E +SK G   +VV +N +  G+ E   V+ A +L   MQ  G   D  TY   + GLC
Sbjct: 108 YLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLC 167

Query: 78  KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
                 ++ EL   +    C  D   ++ +I  LC+ G +  A E+F  +P      +  
Sbjct: 168 SADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNST 227

Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
           TYS +I GL   G+M++A +L  +M       + + +  L     + ++  +V++++HK+
Sbjct: 228 TYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKL 286

Query: 198 KEKNVMPDASIVSIVVDLLAKN 219
           ++  + P   + + V+ +L +N
Sbjct: 287 QDSGISPQTVLFNTVLLVLCRN 308



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 2   LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
           +I G  K  ++E AL L +EM SKG   D  ++  L   L +  ++E   ++  ++Q  G
Sbjct: 232 IIGGLAKAGKMEQALELLNEMASKGYNTDK-MYQLLTESLNKEDKIEEVVQVVHKLQDSG 290

Query: 62  VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
           ++  T  +   +  LC+NG    ++++   +    C  D   Y  LI+GL   G L+ A 
Sbjct: 291 ISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEAR 350

Query: 122 ELFHSL-PRGVL 132
           EL   L  R VL
Sbjct: 351 ELVSRLCSRDVL 362



 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 8   KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
           K  +IE  + +  ++   GI P  V+ NT+ + L    + + A  +  +M   G   D  
Sbjct: 272 KEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDEL 331

Query: 68  TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
           TY I I+GL   GY+ E+ EL   L    C  D+ + S
Sbjct: 332 TYIILIEGLSYEGYLQEARELVSRL----CSRDVLSNS 365


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.140    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,589,638,879
Number of Sequences: 23463169
Number of extensions: 140649103
Number of successful extensions: 450514
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6341
Number of HSP's successfully gapped in prelim test: 5241
Number of HSP's that attempted gapping in prelim test: 323255
Number of HSP's gapped (non-prelim): 70286
length of query: 244
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 105
effective length of database: 9,097,814,876
effective search space: 955270561980
effective search space used: 955270561980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)