BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046446
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 589
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 189 KVIELLHKMKEKNVMPD-----ASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
K +LL K ++N +PD A + S++++ AKN + +P T H R E E
Sbjct: 449 KYRKLLPKQLQRNTIPDGYGDGALVGSVLINPFAKNRGWIRYVPVITDHTRDRERAE 505
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 189 KVIELLHKMKEKNVMPD-----ASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
K +LL K ++N +PD A + S++++ AKN + +P T H R E E
Sbjct: 1143 KYRKLLPKQLQRNTIPDGYGDGALVGSVLINPFAKNRGWIRYVPVITDHTRDRERAE 1199
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 81 YIVESVELFRTLRILKCEL-DIQAYSCLIDG 110
YI ES+ RTL I +C L D AY C++ G
Sbjct: 63 YIFESIGAKRTLTISQCSLADDAAYQCVVGG 93
>pdb|2Y7D|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7E|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7E|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7F|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7G|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
pdb|2Y7G|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
Length = 282
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 166 AVAPNVITF--GTLIHGF-IRINEPSKVIELLHKMKEKNVMP-----DASIVSIVVDLLA 217
A+ P + T GTL G I IN P+ +I L K+ NV+P ++ +V V L+
Sbjct: 105 ALKPEMATLNAGTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIK 164
Query: 218 KNEISLNSL 226
K I+ N L
Sbjct: 165 KGIITQNPL 173
>pdb|2IJQ|A Chain A, Crystal Structure Of Protein Rrnac1037 From Haloarcula
Marismortui, Pfam Duf309
pdb|2IJQ|B Chain B, Crystal Structure Of Protein Rrnac1037 From Haloarcula
Marismortui, Pfam Duf309
Length = 161
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 142 MIHG--LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184
++HG LYN G+ ++HD F D N N T +HG +++
Sbjct: 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGN--TESKFLHGMVQV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,862,372
Number of Sequences: 62578
Number of extensions: 271209
Number of successful extensions: 485
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 9
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)