BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046446
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 154 bits (388), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 129/215 (60%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+CK K +E + L+ EM +G+ + V +NTL GLF+ + A K+F +M DG
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY+I +DGLCK G + +++ +F L+ K E DI Y+ +I+G+CK+G++E
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SL + +V+ Y+ MI G G ++A LF +M+E+ PN T+ TLI
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + + EL+ +M+ + DAS +S+V+++L
Sbjct: 581 LRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 13/237 (5%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC K I A+ L +M +P+ V NTL GLF ++ A L D M G
Sbjct: 156 LLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG 215
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY ++GLCK G I ++ L + + K E D+ Y+ +ID LC + AL
Sbjct: 216 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + +VVTY+ +I L N G+ A L DM E + PNV+TF LI F
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
++ + + +L +M ++++ PD S +++ F +H+R +E
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 379
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 123/252 (48%), Gaps = 35/252 (13%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-----------VER- 49
+I+ C K + ALNL++EM +KGI+P+VV +N+L L + +ER
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 50 -----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
A KL+DEM + + D TY+ I+G C + + E+
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
+F + C ++ Y+ LI G CK+ R+E +ELF + + LV + VTY+ +I GL
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
+ G D A +F M + V P++IT+ L+ G + + K + + +++ + PD
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500
Query: 207 SIVSIVVDLLAK 218
+I+++ + K
Sbjct: 501 YTYNIMIEGMCK 512
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 111/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN +C+ ++ AL + +M+ G +PD+V ++L G ++ A L D+M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+T T+ I GL + E+V L + C+ D+ Y +++GLCK G +++A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + +G + ADVV Y+ +I L N ++ A +LF +M+ + PNV+T+ +LI
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M E+ + P+ S ++D K
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 337
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NG CK +I+ AL+L +M I+ DVVI+ T+ L V A LF EM G
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY I LC G ++ L + K ++ +S LID K G+L A
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 345
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L+ + + + D+ TYS +I+G ++D+A +F M PNV+T+ TLI GF
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405
Query: 182 IRINEPSKVIELLHKMKEKNVM 203
+ + +EL +M ++ ++
Sbjct: 406 CKAKRVEEGMELFREMSQRGLV 427
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 6/207 (2%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G + + A+ L M+++G +PD+ + T+ GL + ++ A L +M++
Sbjct: 191 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 250
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ AD YT ID LC + +++ LF + ++ Y+ LI LC GR A
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + + +VVT+S +I +G++ +A L+ +M + ++ P++ T+ +LI+GF
Sbjct: 311 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Query: 182 I---RINEPSKVIELLHKMKEKNVMPD 205
R++E + EL M K+ P+
Sbjct: 371 CMHDRLDEAKHMFEL---MISKDCFPN 394
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 107/220 (48%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+++ A++L+ EM+ P +V N L + ++++ + L + MQ ++ D +Y
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
I I+ C+ + ++ + + L E DI S L++G C R+ A+ L +
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
+ VT++ +IHGL+ + +A L M P++ T+GT+++G + +
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
+ LL KM++ + D I + ++D L + ++L FT
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT 279
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G CK ++E AL ++ + ++PD+ +N + G+ + +VE + LF +
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + YT I G C+ G E+ LFR ++ + Y+ LI + G +
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 589
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
EL + V D T S++I+ L+ DG+++K++
Sbjct: 590 AELIKEMRSCGFVGDASTISMVINMLH-DGRLEKSY 624
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
D ++D A DLF +M ++ P+++ F L+ ++N+ VI L +M+ + D
Sbjct: 58 DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117
Query: 209 VSIVVDLLAK 218
+I+++ +
Sbjct: 118 YNILINCFCR 127
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 128/221 (57%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILINGYCK I+ L L+ +M +G+ D V +NTL G E+ ++E A +LF EM
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
V D +Y I +DGLC NG +++E+F + K ELDI Y+ +I G+C + +++ A
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 511
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+LF SLP + DV TY+IMI GL G + +A LF MEE+ +PN T+ LI
Sbjct: 512 WDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
+ + +K +L+ ++K DAS V +VVD+L+ +
Sbjct: 572 HLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRL 612
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 116/212 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+CK +++ A ++ M+SKG P++ N L G + + ++ +LF +M G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V ADT TY I G C+ G + + ELF+ + + DI +Y L+DGLC +G E AL
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+F + + + D+ Y+I+IHG+ N ++D A DLF + V P+V T+ +I G
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ S+ L KM+E P+ +I++
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 119/218 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ + K ++ A L+ EM+ +GI PD V + +L G + +Q+++A + D M G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ RT+ I I+G CK I + +ELFR + + D Y+ LI G C+ G+LE+A
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF + + D+V+Y I++ GL ++G+ +KA ++F +E++ + ++ + +IHG
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
++ +L + K V PD +I++ L K
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLF------ 54
I+I+G CK+ ++ A NL++EM KG K D++I+ TL G + + KL
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 55 -----------------------------DEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
EM + G++ DT TYT IDG CK + ++
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371
Query: 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
+ + C +I+ ++ LI+G CK+ ++ LELF + +VAD VTY+ +I G
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
G+++ A +LF +M V P+++++ L+ G EP K +E+ K+++ + D
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491
Query: 206 ASIVSIVV 213
I +I++
Sbjct: 492 IGIYNIII 499
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING C + AL L M+ G KP ++ N L GL +V A L D M G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY + +CK+G ++EL R + K +LD YS +IDGLCK G L+ A
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF+ + AD++ Y+ +I G G+ D L DM + + P+V+ F LI F
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ + + EL +M ++ + PD + ++D K
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 116/228 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG C N ++ A+ L M+ G +P+ V + + + + Q A +L +M+
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK 242
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D Y+I IDGLCK+G + + LF + I + DI Y+ LI G C +GR +
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + + DVV +S +I +G++ +A +L +M + ++P+ +T+ +LI GF
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
+ N+ K +L M K P+ +I+++ K + + L F
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELF 410
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 101/200 (50%)
Query: 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
CK+ + A+ L +M + IK D V ++ + GL + ++ AF LF+EM+ G AD
Sbjct: 223 CKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282
Query: 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
YT I G C G + +L R + K D+ A+S LID K G+L A EL
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
+ + + D VTY+ +I G + Q+DKA+ + M PN+ TF LI+G+ + N
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402
Query: 187 PSKVIELLHKMKEKNVMPDA 206
+EL KM + V+ D
Sbjct: 403 IDDGLELFRKMSLRGVVADT 422
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 107/218 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+IN C+ +++ A + +++ G +PD V +TL GL +V A +L D M
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G T ++GLC NG + ++V L + + + Y ++ +CKSG+ +A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+EL + + D V YSI+I GL DG +D A +LF +ME ++I + TLI G
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
F +LL M ++ + PD S ++D K
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 102/205 (49%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A++L+ EM +P ++ + LF + Q + L +M+ G+A + T +I I+
Sbjct: 56 AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
C+ + + + L E D +S LI+GLC GR+ ALEL +
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
++T + +++GL +G++ A L M E PN +T+G ++ + + + +ELL
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235
Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
KM+E+ + DA SI++D L K+
Sbjct: 236 RKMEERKIKLDAVKYSIIIDGLCKD 260
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)
Query: 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-------------GVAADTRTYTIFID 74
K V L G+ +I + + A LF EM R V A T+ Y + +D
Sbjct: 35 KGKVSYRERLRSGIVDIKE-DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLD 93
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
LCK + TL I+ I+ C+ +L +A + +
Sbjct: 94 -LCKQMELKGIAHNLYTLSIM------------INCCCRCRKLSLAFSAMGKIIKLGYEP 140
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
D VT+S +I+GL +G++ +A +L M E P +IT L++G + S + L+
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200
Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
+M E P+ V+ ++ K+
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKS 225
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 128/215 (59%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+CK+K +E L+ EM +G+ D V + TL GLF + A K+F +M DG
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY+I +DGLC NG + +++E+F ++ + +LDI Y+ +I+G+CK+G+++
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SL + +VVTY+ MI GL + + +A+ L M+E+ PN T+ TLI
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 586 LRDGDKAASAELIREMRSCRFVGDASTIGLVANML 620
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 107/204 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC K I A+ L +M+ G +PD + TL GLF ++ A L D M + G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY + ++GLCK G ++ L + K E D+ ++ +ID LCK ++ AL
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 280
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + +VVTYS +I L + G+ A L DM E + PN++TF LI F
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
++ + + +L M ++++ PD
Sbjct: 341 VKEGKFVEAEKLYDDMIKRSIDPD 364
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 35/252 (13%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
+I+ CK + ++ ALNL+ EM +KGI+P+VV +++L
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325
Query: 38 -------FIGLFEIHQVERAF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
F L + E F KL+D+M + + D TY ++G C + + ++
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
++F + C D+ Y+ LI G CKS R+E ELF + LV D VTY+ +I GL
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
++DG D A +F M + V P+++T+ L+ G + K +E+ M++ + D
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505
Query: 207 SIVSIVVDLLAK 218
I + +++ + K
Sbjct: 506 YIYTTMIEGMCK 517
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 110/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN +C+ +I AL L +M+ G +P +V ++L G ++ A L D+M
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T I GL + E+V L + C+ ++ Y +++GLCK G ++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + + + ADVV ++ +I L +D A +LF +ME + PNV+T+ +LI
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S +LL M EK + P+ + ++D K
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+++NG CK + + ALNL ++M + I+ DVVI NT+ L + V+ A LF EM+
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ + TY+ I LC G ++ +L + K ++ ++ LID K G+ A
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 349
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+L+ + + + D+ TY+ +++G ++DKA +F M P+V+T+ TLI G
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
F + EL +M + ++ D + ++
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 35/247 (14%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ + K + A LY +M+ + I PD+ +N+L G ++++A ++F+ M
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY I G CK+ + + ELFR + D Y+ LI GL G + A
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-------------------------- 155
++F + + D++TYSI++ GL N+G+++KA
Sbjct: 456 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 515
Query: 156 ---------HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
DLF + V PNV+T+ T+I G + LL KMKE +P++
Sbjct: 516 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNS 575
Query: 207 SIVSIVV 213
+ ++
Sbjct: 576 GTYNTLI 582
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL NG + +++ A+ L+ M+ P +V N L + ++ + + L ++MQR
Sbjct: 56 ILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL 114
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ TY I I+ C+ I ++ L + L E I S L++G C R+ A
Sbjct: 115 EIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ L + D +T++ +IHGL+ + +A L M + PN++T+G +++G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + + LL+KM+ + D I + ++D L K
Sbjct: 235 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G C N ++E AL ++ M IK D+ I+ T+ G+ + +V+ + LF +
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + TY I GLC + E+ L + ++ + Y+ LI + G +
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAAS 594
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
EL + V D T ++ + L+ DG++DK+ FLDM
Sbjct: 595 AELIREMRSCRFVGDASTIGLVANMLH-DGRLDKS---FLDM 632
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 128/215 (59%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+CK+K +E L+ EM +G+ D V + TL GLF + A K+F +M DG
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY+I +DGLC NG + +++E+F ++ + +LDI Y+ +I+G+CK+G+++
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SL + +VVTY+ MI GL + + +A+ L M+E+ P+ T+ TLI
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 511 LRDGDKAASAELIREMRSCRFVGDASTIGLVANML 545
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 107/204 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC K I A+ L +M+ G +PD + TL GLF ++ A L D M + G
Sbjct: 86 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 145
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY + ++GLCK G I + L + K E D+ ++ +ID LCK ++ AL
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + +VVTYS +I L + G+ A L DM E + PN++TF LI F
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
++ + + +L M ++++ PD
Sbjct: 266 VKEGKFVEAEKLHDDMIKRSIDPD 289
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 35/252 (13%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL------------------------ 37
+I+ CK + ++ ALNL+ EM +KGI+P+VV +++L
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250
Query: 38 -------FIGLFEIHQVERAF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
F L + E F KL D+M + + D TY I+G C + + ++
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 310
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
++F + C D+ Y+ LI G CKS R+E ELF + LV D VTY+ +I GL
Sbjct: 311 QMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
++DG D A +F M + V P+++T+ L+ G + K +E+ M++ + D
Sbjct: 371 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430
Query: 207 SIVSIVVDLLAK 218
I + +++ + K
Sbjct: 431 YIYTTMIEGMCK 442
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 110/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN +C+ +I AL L +M+ G +P +V ++L G ++ A L D+M
Sbjct: 50 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 109
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T I GL + E+V L + C+ ++ Y +++GLCK G +++A
Sbjct: 110 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + ADVV ++ +I L +D A +LF +ME + PNV+T+ +LI
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S +LL M EK + P+ + ++D K
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 35/247 (14%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ + K + A L+ +M+ + I PD+ +N+L G ++++A ++F+ M
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY I G CK+ + + ELFR + D Y+ LI GL G + A
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA-------------------------- 155
++F + + D++TYSI++ GL N+G+++KA
Sbjct: 381 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 440
Query: 156 ---------HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
DLF + V PNV+T+ T+I G + LL KMKE +PD+
Sbjct: 441 CKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDS 500
Query: 207 SIVSIVV 213
+ ++
Sbjct: 501 GTYNTLI 507
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%)
Query: 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
P + N L + ++ + + L ++MQR G++ + TY I I+ C+ I ++ L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 89 FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
+ L E I S L++G C R+ A+ L + D +T++ +IHGL+
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
+ +A L M + PN++T+G +++G + + LL+KM+ + D I
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 209 VSIVVDLLAK 218
+ ++D L K
Sbjct: 188 FNTIIDSLCK 197
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G C N ++E AL ++ M IK D+ I+ T+ G+ + +V+ + LF +
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + TY I GLC + E+ L + ++ D Y+ LI + G +
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 519
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
EL + V D T ++ + L+ DG++DK+ FLDM
Sbjct: 520 AELIREMRSCRFVGDASTIGLVANMLH-DGRLDKS---FLDM 557
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 147 bits (372), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 127/221 (57%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILINGYCK I+ L L+ +M +G+ D V +NTL G E+ ++ A +LF EM
Sbjct: 408 ILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR 467
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
V + TY I +DGLC NG +++E+F + K ELDI Y+ +I G+C + +++ A
Sbjct: 468 KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 527
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+LF SLP + V TY+IMI GL G + +A LF MEE+ AP+ T+ LI
Sbjct: 528 WDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 587
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
+ + +K ++L+ ++K DAS + +V+D+L+ +
Sbjct: 588 HLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRL 628
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 113/212 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+CK ++ A + M+SKG P++ N L G + ++++ +LF +M G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V ADT TY I G C+ G + + ELF+ + K +I Y L+DGLC +G E AL
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+F + + + D+ Y+I+IHG+ N ++D A DLF + V P V T+ +I G
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ S+ L KM+E PD +I++
Sbjct: 554 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING C + AL L M+ G KPD++ NTL GL + A L D+M G
Sbjct: 164 LINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG 223
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY ++ +CK+G ++EL R + +LD YS +IDGLCK G L+ A
Sbjct: 224 CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAF 283
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF+ + + +++TY+I+I G N G+ D L DM + + PNV+TF LI F
Sbjct: 284 NLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 343
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ + + EL +M + + PD + ++D K
Sbjct: 344 VKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI G+C + L +M+ + I P+VV + L + ++ A +L EM
Sbjct: 303 ILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR 362
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+A DT TYT IDG CK ++ ++ ++ + C+ +I+ ++ LI+G CK+ R++
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
LELF + +VAD VTY+ +I G G+++ A +LF +M V PN++T+ L+ G
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
E K +E+ K+++ + D I +I++
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 118/218 (54%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI+ + K ++ A L+ EM+ +GI PD + + +L G + + +++A ++ D M
Sbjct: 338 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + RT+ I I+G CK I + +ELFR + + D Y+ LI G C+ G+L +A
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 457
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
ELF + + ++VTY I++ GL ++G+ +KA ++F +E++ + ++ + +IHG
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 517
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ +L + K V P +I++ L K
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCK 555
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 111/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+IN +C+ +++ A + +++ G +P+ + +TL GL +V A +L D M
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D T ++GLC +G E++ L + C+ + Y +++ +CKSG+ +A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+EL + + D V YSI+I GL G +D A +LF +ME + N+IT+ LI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
F +LL M ++ + P+ S+++D K
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++N CK+ + A+ L +M + IK D V ++ + GL + ++ AF LF+EM+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY I I G C G + +L R + K ++ +S LID K G+L A
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL + + D +TY+ +I G + +DKA+ + M PN+ TF LI+G+
Sbjct: 354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 413
Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
+ N +EL KM + V+ D
Sbjct: 414 CKANRIDDGLELFRKMSLRGVVADT 438
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 117/236 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+G CK+ ++ A NL++EM KGI +++ +N L G + + KL +M +
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ + T+++ ID K G + E+ EL + + D Y+ LIDG CK L+ A
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 387
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++ + ++ T++I+I+G ++D +LF M V + +T+ TLI G
Sbjct: 388 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 447
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
F + + + EL +M + V P+ I++D L N S +L F E+ +
Sbjct: 448 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 112/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG C + + A+ L +M+ G +P+ V + + + + Q A +L +M+
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D Y+I IDGLCK+G + + LF + + +I Y+ LI G C +GR +
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + + +VVT+S++I +G++ +A +L +M +AP+ IT+ +LI GF
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ N K +++ M K P+ +I+++ K
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 415
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 105/205 (51%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A++L+ +M+ P V+ + LF + + Q + L +M+ G+A + T +I I+
Sbjct: 72 AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMIN 131
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
C+ + + + L E + +S LI+GLC GR+ ALEL +
Sbjct: 132 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 191
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
D++T + +++GL G+ +A L M E PN +T+G +++ + + + +ELL
Sbjct: 192 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251
Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
KM+E+N+ DA SI++D L K+
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKH 276
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 111 LCKSGRLEIAL-----ELFHSLPRG--VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
L ++G L IAL EL RG ++Y + D + D A DLF DM
Sbjct: 21 LLETGTLRIALINCPNELSFCCERGFSAFSDRNLSYRERLRSGLVDIKADDAIDLFRDMI 80
Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ P VI F L + + V+ L +M+ K + + +SI+++ +
Sbjct: 81 HSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCR 135
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 128/220 (58%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI GYC K ++ + ++ + +G+ + V ++ L G + +++ A +LF EM G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY I +DGLC NG + +++E+F L+ K +L I Y+ +I+G+CK G++E A
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF SLP + +V+TY++MI GL G + +A+ L MEE+ APN T+ TLI
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
+R + + +L+ +MK DAS + +V+D+L E+
Sbjct: 554 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGEL 593
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 111/214 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+IN +C+ + A ++ +++ G +PD NTL GLF +V A L D M +
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D TY ++G+C++G +++L R + + D+ YS +ID LC+ G ++ A
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ LF + + + VVTY+ ++ GL G+ + L DM + PNVITF L+
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
F++ + + EL +M + + P+ + ++D
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 106/204 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G ++ A+ L M+ G +PDVV +N++ G+ A L +M+
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 223
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V AD TY+ ID LC++G I ++ LF+ + + + Y+ L+ GLCK+G+
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + +V +V+T+++++ +G++ +A++L+ +M ++PN+IT+ TL+ G+
Sbjct: 284 LLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 343
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
N S+ +L M PD
Sbjct: 344 CMQNRLSEANNMLDLMVRNKCSPD 367
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 2/202 (0%)
Query: 2 LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
L+ G CK K +GAL L +M+S+ I P+V+ N L + +++ A +L+ EM
Sbjct: 269 LVRGLCKAGKWNDGAL-LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G++ + TY +DG C + E+ + + KC DI ++ LI G C R++
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+++F ++ + LVA+ VTYSI++ G G++ A +LF +M + V P+V+T+G L+ G
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447
Query: 181 FIRINEPSKVIELLHKMKEKNV 202
+ K +E+ +++ +
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKM 469
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 111/212 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NG C++ + AL+L +M + +K DV ++T+ L ++ A LF EM+ G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY + GLCK G + L + + + ++ ++ L+D K G+L+ A
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL+ + + +++TY+ ++ G ++ +A+++ M N +P+++TF +LI G+
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ +++ + ++ ++ +A SI+V
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 104/211 (49%)
Query: 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
+ K+ L+ ++ GI ++ N + + A+ + ++ + G DT
Sbjct: 100 RTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTT 159
Query: 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
T+ I GL G + E+V L + C+ D+ Y+ +++G+C+SG +AL+L +
Sbjct: 160 TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM 219
Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
+ ADV TYS +I L DG +D A LF +ME + +V+T+ +L+ G + +
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279
Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ LL M + ++P+ ++++D+ K
Sbjct: 280 NDGALLLKDMVSREIVPNVITFNVLLDVFVK 310
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)
Query: 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89
+V L G+ +I + + A LF EM R ++ F + + ++
Sbjct: 53 NVCFRERLRSGIVDIKK-DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 111
Query: 90 RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149
+ L + +I + +I+ C+ + A + + + D T++ +I GL+ +
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171
Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
G++ +A L M EN P+V+T+ ++++G R + S ++LL KM+E+NV D
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 210 SIVVDLLAKN 219
S ++D L ++
Sbjct: 232 STIIDSLCRD 241
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++I+G CK + A L +M G P+ +NTL + + KL +EM+
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSC 572
Query: 61 GVAADTRTYTIFIDGL 76
G +AD + + ID L
Sbjct: 573 GFSADASSIKMVIDML 588
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 124/215 (57%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+CK K ++ + L+ EM +G+ + V + TL G F+ + + A +F +M DG
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY+I +DGLC NG + ++ +F L+ K E DI Y+ +I+G+CK+G++E
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGW 521
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SL + +VVTY+ M+ G G ++A LF +M+E P+ T+ TLI
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAH 581
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 582 LRDGDKAASAELIREMRSCRFVGDASTIGLVTNML 616
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 120/235 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ C K + ALNL++EM +KGI+P+VV +N+L L + A +L +M
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + T++ ID K G +VE+ +L+ + + DI YS LI+G C RL+ A
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 381
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F + +VVTY+ +I G ++D+ +LF +M + + N +T+ TLIHGF
Sbjct: 382 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
+ E + +M V+PD SI++D L N +L F +R +
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 13/237 (5%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C I A++L +M+ G +PD NTL GLF ++ A L D M G
Sbjct: 157 LLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG 216
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY I ++GLCK G I ++ L + + K E + Y+ +ID LC + AL
Sbjct: 217 CQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDAL 276
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + +VVTY+ +I L N G+ A L DM E + PNV+TF LI F
Sbjct: 277 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 336
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
++ + + +L +M ++++ PD S +++ F +H+R +E
Sbjct: 337 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 380
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 113/218 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN +C+ ++ AL + ++M+ G +PD+V N+L G +++ A L +M
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D+ T+ I GL ++ E+V L + + C+ D+ Y +++GLCK G +++A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + +G + VV Y+ +I L N ++ A +LF +M+ + PNV+T+ +LI
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M E+ + P+ S ++D K
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 108/213 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I++NG CK +I+ AL+L +M I+P VVI+NT+ L V A LF EM
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ + TY I LC G ++ L + K ++ +S LID K G+L A
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+L+ + + + D+ TYS +I+G ++D+A +F M PNV+T+ TLI G
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
F + + +EL +M ++ ++ + + ++
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 109/220 (49%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+++ A+NL+ +M+ P +V + L + ++++ + L ++MQ G++ + TY+
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
I I+ C+ + ++ + + L E DI + L++G C R+ A+ L +
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D T++ +IHGL+ + +A L M P+++T+G +++G + +
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
+ LL KM++ + P I + ++D L + ++L FT
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFT 280
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G C N ++E AL ++ + ++PD+ +N + G+ + +VE + LF +
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + TYT + G C+ G E+ LFR ++ D Y+ LI + G +
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAAS 590
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
EL + V D T ++ + L+ DG++DK+ FL M
Sbjct: 591 AELIREMRSCRFVGDASTIGLVTNMLH-DGRLDKS---FLKM 628
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
ND ++D A +LF DM ++ P+++ F L+ ++N+ VI L +M+ + +
Sbjct: 58 NDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 117
Query: 208 IVSIVVDLLA-KNEISL 223
SI+++ ++++SL
Sbjct: 118 TYSILINCFCRRSQLSL 134
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 143 bits (361), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 126/221 (57%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN YCK K ++ + L+ E+ SKG+ P+ + +NTL +G + ++ A +LF EM
Sbjct: 390 ILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV TY I +DGLC NG + +++E+F ++ + L I Y+ +I G+C + +++ A
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 509
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
LF SL + DVVTY++MI GL G + +A LF M+E+ P+ T+ LI
Sbjct: 510 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 569
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
+ + +EL+ +MK D+S + +V+D+L+ +
Sbjct: 570 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRL 610
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 113/212 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+CK + A ++ M+SKG +PD+V ++ L + +V+ +LF E+ G
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ +T TY + G C++G + + ELF+ + + Y L+DGLC +G L AL
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+F + + + + Y+I+IHG+ N ++D A LF + + V P+V+T+ +I G
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ S+ L KMKE PD +I++
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 114/212 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G C + + + + EM+ + I PDVV + L + ++ A +L++EM G
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+A DT TY IDG CK + E+ ++F + CE DI YS LI+ CK+ R++ +
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + L+ + +TY+ ++ G G+++ A +LF +M V P+V+T+G L+ G
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
E +K +E+ KM++ + I +I++
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 112/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C + A+ L M+ +PD+V +TL GL +V A L D M G
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY ++ LCK+G +++LFR + + + YS +ID LCK G + AL
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF+ + + ADVVTYS +I GL NDG+ D + +M + P+V+TF LI F
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ + + EL ++M + + PD + ++D K
Sbjct: 326 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 362
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 111/219 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+ CK+ + AL+L++EM KGIK DVV +++L GL + + K+ EM
Sbjct: 250 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 309
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ D T++ ID K G ++E+ EL+ + D Y+ LIDG CK L A
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 369
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++F + D+VTYSI+I+ ++D LF ++ + PN IT+ TL+ G
Sbjct: 370 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 429
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
F + + + EL +M + V P I++D L N
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 468
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 109/217 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING C + AL L M+ G +PD V + + L + A LF +M+
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ A Y+I ID LCK+G +++ LF + + + D+ YS LI GLC G+ +
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++ + ++ DVVT+S +I +G++ +A +L+ +M +AP+ IT+ +LI GF
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 360
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ N + ++ M K PD SI+++ K
Sbjct: 361 CKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 397
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 108/218 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+IN YC+ K++ A ++ G +PD + +TL G +V A L D M
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
D T + I+GLC G + E++ L + + D Y +++ LCKSG +A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L+LF + + A VV YSI+I L DG D A LF +ME + +V+T+ +LI G
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ ++L +M +N++PD S ++D+ K
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 97/209 (46%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
++ A++L+ M+ P + N L + Q + M+ +G+ D T T
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
I I+ C+ ++ + + L E D +S L++G C GR+ A+ L +
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D+VT S +I+GL G++ +A L M E P+ +T+G +++ + +
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
++L KM+E+N+ SIV+D L K+
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKD 258
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 20/220 (9%)
Query: 19 YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-ADTRTYTIFIDGLC 77
Y E L GI D+ +++ I LFE R + R A A T+ Y + + G C
Sbjct: 38 YKERLRNGI-VDIKVNDA--IDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVL-GFC 93
Query: 78 KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
K + + E D+ + +I+ C+ +L A + + D +
Sbjct: 94 KG------------MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTI 141
Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
T+S +++G +G++ +A L M E P+++T TLI+G S+ + L+ +M
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201
Query: 198 KEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
E PD V++ L K S NS + + + EE
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCK---SGNSALALDLFRKMEE 238
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 121/215 (56%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+CK K +E + ++ EM +G+ + V +N L GLF+ + A ++F EM DG
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + TY +DGLCKNG + +++ +F L+ K E I Y+ +I+G+CK+G++E
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF +L + DVV Y+ MI G G ++A LF +M+E+ PN + TLI
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + EL+ +M+ DAS + +V ++L
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 13/239 (5%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC +K I A+ L +M G +P+ V NTL GLF ++ A L D M G
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY + ++GLCK G + L + K E + Y+ +IDGLCK ++ AL
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + +VVTYS +I L N G+ A L DM E + P+V TF LI F
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
++ + + +L +M ++++ P S +++ F +H+R +E +
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN-------------GFCMHDRLDEAKQ 382
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 35/252 (13%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-------------------- 41
+I+G CK K ++ ALNL+ EM +KGI+P+VV +++L L
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321
Query: 42 -----FEIHQVERAF----------KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
F + AF KL+DEM + + TY+ I+G C + + E+
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
++F + C D+ Y+ LI G CK R+E +E+F + + LV + VTY+I+I GL
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
+ G D A ++F +M + V PN++T+ TL+ G + + K + + ++ + P
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501
Query: 207 SIVSIVVDLLAK 218
+I+++ + K
Sbjct: 502 YTYNIMIEGMCK 513
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 109/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN +C+ ++ AL + +M+ G +P++V ++L G ++ A L D+M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G +T T+ I GL + E++ L + C+ D+ Y +++GLCK G ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + +G L V+ Y+ +I GL MD A +LF +ME + PNV+T+ +LI
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M E+ + PD S ++D K
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 114/216 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+++NG CK + + A NL ++M ++P V+I+NT+ GL + ++ A LF EM+
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ + TY+ I LC G ++ L + K D+ +S LID K G+L A
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+L+ + + + +VTYS +I+G ++D+A +F M P+V+T+ TLI G
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 405
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
F + + +E+ +M ++ ++ + +I++ L
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI G + + + A ++ EM+S G+ P+++ +NTL GL + ++E+A +F+ +QR
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 495
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ TY I I+G+CK G + + +LF L + + D+ AY+ +I G C+ G E A
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
LF + + + Y+ +I DG + + +L +M A + T G
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG 610
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 104/208 (50%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+++ A+ L+ EM+ P ++ + L + ++++ + L ++MQ G+ + TY+
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
I I+ C+ + ++ + + L E +I S L++G C S R+ A+ L +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
+ VT++ +IHGL+ + +A L M P+++T+G +++G + +
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
LL+KM++ + P I + ++D L K
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCK 268
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 122/215 (56%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+CK K++ + L+ +M +G+ + V + TL G F+ + A +F +M DG
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + TY +DGLCKNG + +++ +F L+ K E DI Y+ + +G+CK+G++E
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGW 505
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SL + DV+ Y+ MI G G ++A+ LF+ M+E+ P+ T+ TLI
Sbjct: 506 DLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAH 565
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + + EL+ +M+ DAS +V D+L
Sbjct: 566 LRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 600
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 22/262 (8%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+IN C+ ++ AL + +M+ G P +V N+L G +++ A L D+M
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T + GL ++ E+V L + + C+ D+ Y +I+GLCK G ++A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + + +G + ADVV YS +I L +D A +LF +M+ + P+V T+ +LI
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK---------------------N 219
S LL M E+ + P+ + ++D AK N
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 220 EISLNSL-PSFTVHERQEEVDE 240
++ NSL F +H+R +E +
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQ 366
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ C A L S+ML + I P+VV N+L + ++ A KLFDEM +
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY I+G C + + E+ ++F + C D+ Y+ LI+G CK+ ++ +
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF + R LV + VTY+ +IHG + D A +F M + V PN++T+ TL+ G
Sbjct: 401 ELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + K + + +++ + PD +I+ + + K
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCK 497
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 114/218 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ CK + ++ ALNL++EM +KGI+PDV +++L L + A +L +M
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + T+ ID K G ++E+ +LF + + +I Y+ LI+G C RL+ A
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 365
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F + + DVVTY+ +I+G ++ +LF DM + N +T+ TLIHGF
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ ++ + +M V P+ + ++D L KN
Sbjct: 426 FQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 119/272 (43%), Gaps = 41/272 (15%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C I A+ L +M+ G +PD V TL GLF+ ++ A L + M G
Sbjct: 141 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 200
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY I+GLCK G ++ L + K E D+ YS +ID LCK ++ AL
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF------- 174
LF + + DV TYS +I L N G+ A L DM E + PNV+TF
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320
Query: 175 ----------------------------GTLIHGFI---RINEPSKVIELLHKMKEKNVM 203
+LI+GF R++E ++ L M K+ +
Sbjct: 321 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL---MVSKDCL 377
Query: 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
PD + +++ K + ++ + F R+
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+ING CK E + ALNL ++M I+ DVVI++T+ L + V+ A LF EM G
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY+ I LC G ++ L + K ++ ++ LID K G+L A
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF + + + ++VTY+ +I+G ++D+A +F M P+V+T+ TLI+GF
Sbjct: 331 KLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ + +EL M + ++ + + ++
Sbjct: 391 CKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 108/220 (49%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+++ A++L+ EM+ P +V + L + ++ + + ++M+ GV+ + TY
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
I I+ LC+ + ++ + + L I + L++G C R+ A+ L +
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D VT++ ++HGL+ + +A L M P+++T+G +I+G + EP
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
+ LL+KM++ + D I S V+D L K ++L FT
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFT 264
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+ G CK ++E +L+ + KG+KPDV+ +NT+ G + E A+ LF +M+ D
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
G D+ TY I ++G S EL + +R + D Y + D L GRL+
Sbjct: 550 GPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML-HDGRLD 606
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 122/221 (55%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILINGYCK I+ L L+ EM +G+ + V +NTL G + ++E A KLF EM
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
V D +Y I +DGLC NG + +++E+F + K ELDI Y +I G+C + +++ A
Sbjct: 468 RVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDA 527
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+LF SLP + D Y+IMI L + KA LF M E AP+ +T+ LI
Sbjct: 528 WDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA 587
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
+ ++ + EL+ +MK D S V +V+++L+ E+
Sbjct: 588 HLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGEL 628
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 112/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG C + AL L M+ G KP ++ NTL GL +V A L D M G
Sbjct: 164 LLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETG 223
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY ++ +CK+G ++EL R + +LD YS +IDGLCK G L+ A
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAF 283
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF+ + AD++TY+ +I G N G+ D L DM + ++PNV+TF LI F
Sbjct: 284 NLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSF 343
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ + + +LL +M ++ + P+ + ++D K
Sbjct: 344 VKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 113/213 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG C N ++ A+ L M+ G +P+ V + + + + Q A +L +M+
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D Y+I IDGLCK+G + + LF + I + DI Y+ LI G C +GR +
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + + +VVT+S++I +G++ +A L +M + +APN IT+ +LI GF
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
+ N + I+++ M K PD +I+++
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 35/248 (14%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL------------------- 41
I+I+G CK+ ++ A NL++EM KG K D++ +NTL G
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 42 --------FEI--------HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
F + ++ A +L EM + G+A +T TY IDG CK + E+
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387
Query: 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145
+++ + C+ DI ++ LI+G CK+ R++ LELF + ++A+ VTY+ ++ G
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447
Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
G+++ A LF +M V P+++++ L+ G E K +E+ K+++ + D
Sbjct: 448 FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507
Query: 206 ASIVSIVV 213
I I++
Sbjct: 508 IGIYMIII 515
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 122/220 (55%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI+ + K ++ A L EM+ +GI P+ + +N+L G + +++E A ++ D M
Sbjct: 338 VLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISK 397
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D T+ I I+G CK I + +ELFR + + + Y+ L+ G C+SG+LE+A
Sbjct: 398 GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVA 457
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+LF + + D+V+Y I++ GL ++G+++KA ++F +E++ + ++ + +IHG
Sbjct: 458 KKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG 517
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
++ +L + K V DA +I++ L + +
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKD 557
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++N CK+ + A+ L +M + IK D V ++ + GL + ++ AF LF+EM+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
AD TY I G C G + +L R + K ++ +S LID K G+L A
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + + + +TY+ +I G + ++++A + M P+++TF LI+G+
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ N +EL +M + V+ + + +V
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 103/205 (50%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A++L+ +M+ P V+ N LF + + Q E L +M+ G+A T +I I+
Sbjct: 72 AVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMIN 131
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
C+ + + + L E D ++ L++GLC R+ ALEL +
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
++T + +++GL +G++ A L M E PN +T+G +++ + + + +ELL
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251
Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
KM+E+N+ DA SI++D L K+
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKD 276
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 121/215 (56%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+CK K +E + ++ EM +G+ + V + TL G F+ + A +F +M DG
Sbjct: 362 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 421
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY I +DGLC NG + ++ +F ++ +LDI Y+ +I+ LCK+G++E
Sbjct: 422 VHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGW 481
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SL + +VVTY+ M+ G G ++A LF++M+E+ PN T+ TLI
Sbjct: 482 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRAR 541
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + + EL+ +M+ DAS +V ++L
Sbjct: 542 LRDGDEAASAELIKEMRSCGFAGDASTFGLVTNML 576
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 111/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I IN +C+ ++ AL + +M+ G P +V N+L G +++ A L D+M
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T + GL ++ E+V L + + C+ D+ Y +I+GLCK G ++A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + + +G + ADVV Y+ +I GL MD A DLF ME + P+V T+ LI
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M EKN+ PD + ++D K
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+G CK K ++ A +L+++M +KGIKPDV +N L L + A +L +M
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ D + ID K G +VE+ +L+ ++ C D+ AY+ LI G CK R+E
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG 375
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+E+F + + LV + VTY+ +IHG + D A +F M + V P+++T+ L+ G
Sbjct: 376 MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDG 435
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + M+++++ D + +++ L K
Sbjct: 436 LCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 1/236 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+ING CK E + ALNL ++M I+ DVVI+NT+ GL + ++ AF LF++M+ G
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY I LC G ++ L + D+ ++ LID K G+L A
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340
Query: 122 ELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+L+ + + DVV Y+ +I G ++++ ++F +M + + N +T+ TLIHG
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHG 400
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
F + + + +M V PD +I++D L N +L F ++++
Sbjct: 401 FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD 456
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 105/208 (50%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+++ A+ L+ +M+ P +V + L + ++++ + L ++MQ G++ + TY+
Sbjct: 55 KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
IFI+ C+ + ++ + + L I + L++G C R+ A+ L +
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D VT++ ++HGL+ + +A L M P+++T+G +I+G + EP
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ LL+KM++ + D I + ++D L K
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCK 262
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G C N +E AL ++ M + +K D+V + T+ L + +VE + LF +
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + TYT + G C+ G E+ LF ++ + Y+ LI + G +
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS 550
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
EL + D T+ ++ + L+ DG++DK+ FLDM
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNMLH-DGRLDKS---FLDM 588
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+CK K +E + L+ EM +G+ + V + T+ G F+ + A +F +M +
Sbjct: 404 LINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR 463
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY+I + GLC G + ++ +F+ L+ + EL+I Y+ +I+G+CK+G++ A
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SL + DVVTY+ MI GL + + +A DLF M+E+ PN T+ TLI
Sbjct: 524 DLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRAN 580
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + + EL+ +M+ + DAS +S+V ++L
Sbjct: 581 LRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC +K I A+ L +M+ G KPD TL GLF ++ A L D+M + G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY ++GLCK G I ++ L + + + ++ ++ +ID LCK +E+A+
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAV 278
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF + + +VVTY+ +I+ L N G+ A L +M E + PNV+TF LI F
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240
+ + + +L +M ++++ PD +I +LL + F +H R +E +
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPD----TITYNLL---------INGFCMHNRLDEAKQ 384
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LIN C A L S ML K I P+VV N L F+ ++ A KL +EM +
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ DT TY + I+G C + + E+ ++F+ + C +IQ Y+ LI+G CK R+E +
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF + + LV + VTY+ +I G + G D A +F M N V +++T+ L+HG
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGL 478
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 112/218 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I IN +C+ ++ AL + ++M+ G +PD+V ++L G ++ A L D+M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T I GL + E+V L + C+ D+ Y +++GLCK G +++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + + + A+VV ++ +I L ++ A DLF +ME + PNV+T+ +LI+
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M EK + P+ + ++D K
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFK 340
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 111/212 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NG CK +I+ ALNL ++M + IK +VVI NT+ L + VE A LF EM+ G
Sbjct: 229 VVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKG 288
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY I+ LC G ++ L + K ++ ++ LID K G+L A
Sbjct: 289 IRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + + D +TY+++I+G ++D+A +F M PN+ T+ TLI+GF
Sbjct: 349 KLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGF 408
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ +EL +M ++ ++ + + ++
Sbjct: 409 CKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 108/208 (51%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+++ A++L+ +M+ P +V N L + ++++ E L ++MQ G++ D TY+
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
IFI+ C+ + ++ + + L E DI S L++G C S R+ A+ L +
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D T++ +IHGL+ + +A L M + P+++T+GT+++G + +
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ LL+KM+ + + I + ++D L K
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCK 270
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 112/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G + + A+ L +M+ +G +PD+V + T+ GL + ++ A L ++M+
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR 253
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ A+ + ID LCK ++ +V+LF + ++ Y+ LI+ LC GR A
Sbjct: 254 IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS 313
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L ++ + +VVT++ +I + +G++ +A L +M + ++ P+ IT+ LI+GF
Sbjct: 314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
N + ++ M K+ +P+ + +++ K
Sbjct: 374 CMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCK 410
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 118/215 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+CK K +E + L+ EM +G+ + V + TL G F+ + A +F +M G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + TY I +DGLCKNG + +++ +F L+ E DI Y+ +I+G+CK+G++E
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF +L + +V+ Y+ MI G G ++A L M+E+ PN T+ TLI
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRAR 583
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+R + EL+ +M+ DAS + +V ++L
Sbjct: 584 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 618
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 121/217 (55%), Gaps = 10/217 (4%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+C + ++ A +++ M+SK P+VV ++TL G + +VE +LF EM + G
Sbjct: 369 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG 428
Query: 62 VAADTRTYTIFIDGL-----CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
+ +T TYT I G C N +V F+ + + +I Y+ L+DGLCK+G+
Sbjct: 429 LVGNTVTYTTLIHGFFQARDCDNAQMV-----FKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
L A+ +F L R + D+ TY+IMI G+ G+++ +LF ++ V+PNVI + T
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543
Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+I GF R + LL KMKE +P++ + ++
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLI 580
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC +K I A+ L +M+ G KPD TL GLF ++ A L D+M + G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY ++GLCK G I ++ L + + K E D+ Y+ +IDGLCK ++ AL
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDAL 278
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + DV TYS +I L N G+ A L DM E + PNV+TF LI F
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
++ + + +L +M ++++ PD S +++ F +H+R +E
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 382
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 112/218 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I IN +C+ ++ AL + ++M+ G +PD+V ++L G ++ A L D+M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T I GL + E+V L + C+ D+ Y +++GLCK G +++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + +G + ADVV Y+ +I GL MD A +LF +M+ + P+V T+ +LI
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M E+ + P+ S ++D K
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 116/218 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+G CK K ++ ALNL++EM +KGI+PDV +++L L + A +L +M
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + T++ ID K G +VE+ +L+ + + DI YS LI+G C RL+ A
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 383
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F + +VVTYS +I G ++++ +LF +M + + N +T+ TLIHGF
Sbjct: 384 HMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + + +M V P+ +I++D L KN
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NG CK +I+ AL+L +M I+ DVVI+NT+ GL + ++ A LF EM G
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG 288
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY+ I LC G ++ L + K ++ +S LID K G+L A
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L+ + + + D+ TYS +I+G ++D+A +F M PNV+T+ TLI GF
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ + +EL +M ++ ++ + + ++
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 6/220 (2%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G + + A+ L +M+ +G +PD+V + T+ GL + ++ A L +M++
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK 253
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ AD Y IDGLCK ++ +++ LF + D+ YS LI LC GR A
Sbjct: 254 IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDAS 313
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + + +VVT+S +I +G++ +A L+ +M + ++ P++ T+ +LI+GF
Sbjct: 314 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 373
Query: 182 I---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
R++E + EL M K+ P+ S ++ K
Sbjct: 374 CMHDRLDEAKHMFEL---MISKDCFPNVVTYSTLIKGFCK 410
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 114/220 (51%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+++ A++L+ +M+ P +V N L + ++++ E L ++MQ G++ D TY+
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
IFI+ C+ + ++ + + L E DI S L++G C S R+ A+ L +
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D T++ +IHGL+ + +A L M + P+++T+GT+++G + +
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230
+ LL KM++ + D I + ++D L K + ++L FT
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFT 282
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G CKN ++ A+ ++ + ++PD+ +N + G+ + +VE ++LF +
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV+ + Y I G C+ G E+ L + ++ + Y+ LI + G E +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
EL + D T ++ + L+ DG++DK+ FLDM
Sbjct: 593 AELIKEMRSCGFAGDASTIGLVTNMLH-DGRLDKS---FLDM 630
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 121/220 (55%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ YC+ K ++ + L E+ +G+ + +NTL G E+ + A LF EM G
Sbjct: 438 IIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG 497
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V DT T I + G C+N + E++ELF +++ K +LD AY+ +I G+CK +++ A
Sbjct: 498 VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF SLP + DV TY++MI G + A+ LF M++N P+ T+ TLI G
Sbjct: 558 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 617
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
++ E K IEL+ +M+ DA + +V DL+ +
Sbjct: 618 LKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRL 657
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 15/220 (6%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-----------FEIHQVER 49
ILI +C ++ +L+ + ++ G +PDVV NTL GL + VE
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205
Query: 50 AF----KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
F LFD+M G+ T+ I+GLC G ++E+ L + +D+ Y
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265
Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
+++G+CK G + AL L + + DVV YS +I L DG A LF +M E
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325
Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
+APNV T+ +I GF S LL M E+ + PD
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 7/245 (2%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+G+C A L +M+ + I PDV+ N L + ++ A KL DEM
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ DT TY I G CK+ ++ +F L D+ ++ +ID C++ R++ +
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFD----LMASPDVVTFNTIIDVYCRAKRVDEGM 452
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + R LVA+ TY+ +IHG ++ A DLF +M + V P+ IT L++GF
Sbjct: 453 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 512
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN---EISLNSLPSFTVHERQEEV 238
+ + +EL ++ + D +I++ + K + + + S +H + +V
Sbjct: 513 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 572
Query: 239 DESNV 243
NV
Sbjct: 573 QTYNV 577
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 4/217 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING C + A L ++M+ KG+ DVV + T+ G+ ++ + A L +M+
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D Y+ ID LCK+G+ ++ LF + ++ Y+C+IDG C GR A
Sbjct: 292 IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 351
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + + DV+T++ +I +G++ +A L +M + P+ +T+ ++I+GF
Sbjct: 352 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ N + M PD + ++D+ +
Sbjct: 412 CKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCR 444
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A+ L+ +M+ G+ P V+ NTL GL +V A L ++M G+ D TY ++
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
G+CK G ++ L + + D+ YS +ID LCK G A LF + +
Sbjct: 270 GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 329
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
+V TY+ MI G + G+ A L DM E + P+V+TF LI ++ + + +L
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389
Query: 195 HKMKEKNVMPDA 206
+M + + PD
Sbjct: 390 DEMLHRCIFPDT 401
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 39/247 (15%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ K ++ A L EML + I PD V +N++ G + ++ + A +FD M
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM---- 427
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID------------ 109
+ D T+ ID C+ + E ++L R + + Y+ LI
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487
Query: 110 -----------------------GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
G C++ +LE ALELF + + D V Y+I+IHG+
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 547
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
++D+A DLF + + V P+V T+ +I GF + S L HKMK+ PD
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 607
Query: 207 SIVSIVV 213
S + ++
Sbjct: 608 STYNTLI 614
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+ G+C+N+++E AL L+ + I D V +N + G+ + +V+ A+ LF +
Sbjct: 507 ILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH 566
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV D +TY + I G C I ++ LF ++ E D Y+ LI G K+G ++ +
Sbjct: 567 GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
+EL + D T M+ L DG++DK+ F DM
Sbjct: 627 IELISEMRSNGFSGDAFTIK-MVADLITDGRLDKS---FSDM 664
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A++LY +M + I ++ N L + H++ + F ++ + G D T+ +
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLH 184
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
GLC I E++ LF Y + ++G LE A+ LF + L
Sbjct: 185 GLCLEDRISEALALF-------------GY------MVETGFLE-AVALFDQMVEIGLTP 224
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
V+T++ +I+GL +G++ +A L M + +V+T+GT+++G ++ + + LL
Sbjct: 225 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 284
Query: 195 HKMKEKNVMPDASIVSIVVDLLAKN 219
KM+E ++ PD I S ++D L K+
Sbjct: 285 SKMEETHIKPDVVIYSAIIDRLCKD 309
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 3/219 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGI--KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
L+ G+C+ + AL ++ +++SK + P+ V ++ L GL E+ ++E AF L D+M
Sbjct: 236 LLLGFCRGLNLRDALKVF-DVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294
Query: 60 DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
G TRTYT+ I LC G I ++ LF + C+ ++ Y+ LIDGLC+ G++E
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEE 354
Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
A + + + + V+TY+ +I+G DG++ A +L ME+ A PNV TF L+
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELME 414
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
G R+ +P K + LL +M + + PD ++++D L +
Sbjct: 415 GLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 112/219 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+G C+ +E A L +M KG +P + L L + +++AF LFDEM
Sbjct: 271 ILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPR 330
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + TYT+ IDGLC++G I E+ + R + + + Y+ LI+G CK GR+ A
Sbjct: 331 GCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPA 390
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
EL + + +V T++ ++ GL G+ KA L M +N ++P+++++ LI G
Sbjct: 391 FELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDG 450
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
R + +LL M ++ PD + +++ K
Sbjct: 451 LCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQ 489
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 111/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI C I+ A NL+ EM+ +G KP+V + L GL ++E A + +M +D
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ TY I+G CK+G +V + EL + C+ +++ ++ L++GLC+ G+ A
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ L + L D+V+Y+++I GL +G M+ A+ L M + P+ +TF +I+
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
F + + L M K + D + ++D + K
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK 523
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 113/219 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI+G C++ +IE A + +M+ I P V+ +N L G + +V AF+L M++
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ RT+ ++GLC+ G ++V L + + DI +Y+ LIDGLC+ G + A
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTA 460
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+L S+ + D +T++ +I+ G+ D A M ++ + +T TLI G
Sbjct: 461 YKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
++ + + +L + + ++ +++++D+L+K
Sbjct: 521 VCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKG 559
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 98/200 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+IN +CK + + A ML KGI D V TL G+ ++ + A + + + +
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMR 541
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + + +D L K + E + + + L + Y+ L+DGL +SG + +
Sbjct: 542 ILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSF 601
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ + + +V Y+I+I+GL G++++A L M+++ V+PN +T+ ++ G+
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661
Query: 182 IRINEPSKVIELLHKMKEKN 201
+ + + +E + M E+
Sbjct: 662 VNNGKLDRALETVRAMVERG 681
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 5/197 (2%)
Query: 26 GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
G + + +++L + L ++ A+ + M+ DG Y ++ LCKNGY E+
Sbjct: 155 GFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGY-TEA 213
Query: 86 VELFRTLRILKCE--LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-DVVTYSIM 142
E+F + +ILK LD + L+ G C+ L AL++F + + V A + V+YSI+
Sbjct: 214 AEMFMS-KILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSIL 272
Query: 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202
IHGL G++++A L M E P+ T+ LI K L +M +
Sbjct: 273 IHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGC 332
Query: 203 MPDASIVSIVVDLLAKN 219
P+ ++++D L ++
Sbjct: 333 KPNVHTYTVLIDGLCRD 349
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 15 ALNLYSEMLSKGIK-----------------PDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
+LN+ +MLSKG K P VV + TL GL + +F++ + M
Sbjct: 548 SLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELM 607
Query: 58 QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
+ G + YTI I+GLC+ G + E+ +L ++ + Y+ ++ G +G+L
Sbjct: 608 KLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKL 667
Query: 118 EIALELFHSL-PRGVLVADVVTYSIMIHGL 146
+ ALE ++ RG + D + YS ++ G
Sbjct: 668 DRALETVRAMVERGYELNDRI-YSSLLQGF 696
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 134 bits (336), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 116/207 (56%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING C ++ A ++ M G P+ VI+ TL G + +VE K+F EM + G
Sbjct: 299 LINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKG 358
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V A+T TYT+ I G C G + E+F + + DI+ Y+ L+DGLC +G++E AL
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKAL 418
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F + + + ++VTY+I+I G+ G+++ A DLF + + PNVIT+ T+I GF
Sbjct: 419 MIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGF 478
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASI 208
R + L KMKE +P+ S+
Sbjct: 479 CRRGLIHEADSLFKKMKEDGFLPNESV 505
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC IE A+ L+ ++L G KP+VV + TL L + + A +LF++M +G
Sbjct: 159 LLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNG 218
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY + GLC+ G ++ L R + + E ++ ++ LID K G+L A
Sbjct: 219 SRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL++ + + + DV TY +I+GL G +D+A +F ME N PN + + TLIHGF
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
+ +++ ++M +K V+ + ++++
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQ 371
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 1/238 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI CKN+ + A+ L+++M + G +P+VV +N L GL EI + A L +M +
Sbjct: 194 LIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRR 253
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + T+T ID K G ++E+ EL+ + + D+ Y LI+GLC G L+ A
Sbjct: 254 IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEAR 313
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F+ + R + V Y+ +IHG +++ +F +M + V N IT+ LI G+
Sbjct: 314 QMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGY 373
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239
+ P E+ ++M + PD ++++D L N +L F + R+ E+D
Sbjct: 374 CLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFE-YMRKREMD 430
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 111/220 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+++ C + + A +M+ G +PD+V +L G +++E A LFD++
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + TYT I LCKN ++ +VELF + ++ Y+ L+ GLC+ GR A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + +V+T++ +I G++ +A +L+ M + +V P+V T+G+LI+G
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
+ ++ + M+ P+ I + ++ K++
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSK 342
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 1/218 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL NG N + AL+L++ M+ P ++ L + ++++ + LF++MQ
Sbjct: 54 ILRNGL-HNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQIL 112
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ T I + +C + + + L E D+ ++ L++G C R+E A
Sbjct: 113 GIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDA 172
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ LF + +VVTY+ +I L + ++ A +LF M N PNV+T+ L+ G
Sbjct: 173 IALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTG 232
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
I LL M ++ + P+ + ++D K
Sbjct: 233 LCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVK 270
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 70/127 (55%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI GYC + A ++++M S+ PD+ +N L GL +VE+A +F+ M++
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ + TYTI I G+CK G + ++ +LF +L + ++ Y+ +I G C+ G + A
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487
Query: 121 LELFHSL 127
LF +
Sbjct: 488 DSLFKKM 494
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L++G C N ++E AL ++ M + + ++V + + G+ ++ +VE AF LF +
Sbjct: 403 VLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSK 462
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
G+ + TYT I G C+ G I E+ LF+ ++
Sbjct: 463 GMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I G CK ++E A +L+ + SKG+KP+V+ + T+ G + A LF +M+ D
Sbjct: 438 IIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED 497
Query: 61 GVAADTRTY 69
G + Y
Sbjct: 498 GFLPNESVY 506
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 124/214 (57%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI G C+ EIE + +L E+ G P+VVI+ TL G + ++E+A LF EM +
Sbjct: 168 ILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKL 227
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ A+ RTYT+ I+GL KNG + E++ ++ ++ Y+C+++ LCK GR + A
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++F + + ++VTY+ +I GL + ++++A+ + M+ + + PN+IT+ TLI G
Sbjct: 288 FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
F + + K + L +K + + P +I+V
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVS 381
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 123/219 (56%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G CK EIE A +L+ EM G+ + + L GLF+ ++ F+++++MQ DG
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG 263
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + TY ++ LCK+G ++ ++F +R +I Y+ LI GLC+ +L A
Sbjct: 264 VFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEAN 323
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++ + + +++TY+ +I G G++ KA L D++ ++P+++T+ L+ GF
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
R + S +++ +M+E+ + P +I++D A+++
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 110/213 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LING KN + +Y +M G+ P++ +N + L + + + AF++FDEM+
Sbjct: 238 VLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRER 297
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV+ + TY I GLC+ + E+ ++ ++ ++ Y+ LIDG C G+L A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L L L +VTY+I++ G G A + +MEE + P+ +T+ LI
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
F R + K I+L M+E ++PD S+++
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 114/235 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++N CK+ + A ++ EM +G+ ++V +NTL GL ++ A K+ D+M+ DG
Sbjct: 274 VMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG 333
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY IDG C G + +++ L R L+ + Y+ L+ G C+ G A
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAA 393
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++ + + VTY+I+I M+KA L L MEE + P+V T+ LIHGF
Sbjct: 394 KMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGF 453
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
+ ++ L M EKN P+ I + ++ K S +L E +E
Sbjct: 454 CIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 2/224 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+C ++ AL+L ++ S+G+ P +V +N L G A K+ EM+ G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TYTI ID ++ + ++++L ++ L D+ YS LI G C G++ A
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF S+ + V Y+ MI G +G +A L +MEE +APNV ++ +I
Sbjct: 464 RLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVL 523
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225
+ + + L+ KM + + P SI+S++ AKN+ ++S
Sbjct: 524 CKERKSKEAERLVEKMIDSGIDPSTSILSLISR--AKNDSHVSS 565
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 115/224 (51%), Gaps = 2/224 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++IN Y +++ + +++ ++EM+ G P N L + + + F+E +
Sbjct: 99 VIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKS 157
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
V D ++ I I G C+ G I +S +L L ++ Y+ LIDG CK G +E A
Sbjct: 158 KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+LF + + LVA+ TY+++I+GL+ +G + +++ M+E+ V PN+ T+ +++
Sbjct: 218 KDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQ 277
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
+ ++ +M+E+ V + + ++ L + E+ LN
Sbjct: 278 LCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR-EMKLN 320
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G+C+ + GA + EM +GIKP V + L +E+A +L M+
Sbjct: 378 ILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEEL 437
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ D TY++ I G C G + E+ LF+++ CE + Y+ +I G CK G A
Sbjct: 438 GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRA 497
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
L+L + L +V +Y MI L + + +A L M ++ + P+
Sbjct: 498 LKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183
F + + +V DV ++ I+I G G+++K+ DL +++ E +PNV+ + TLI G +
Sbjct: 151 FFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCK 210
Query: 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
E K +L +M + ++ + +++++ L KN + F ++E+ +E
Sbjct: 211 KGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQ---GFEMYEKMQE 261
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 120/212 (56%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C+ + AL ++ +M+ G KP+VVI+NT+ GL + QV+ A L + M++DG
Sbjct: 157 LLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG 216
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY I GLC +G ++ + + + D+ ++ LID K GR+ A
Sbjct: 217 IGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAE 276
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E + + R L D+VTYS++I+GL ++D+A ++F M P+V+T+ LI+G+
Sbjct: 277 EFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGY 336
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ + ++L +M ++ V+ + +I++
Sbjct: 337 CKSKKVEHGMKLFCEMSQRGVVRNTVTYTILI 368
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 115/209 (55%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI G C ++ A ++ M+SKG PDVV ++ L G + +VE KLF EM +
Sbjct: 296 LLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV +T TYTI I G C+ G + + E+FR + +I Y+ L+ GLC +G++E A
Sbjct: 356 GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKA 415
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + + AD+VTY+I+I G+ G++ A D++ + + P++ T+ T++ G
Sbjct: 416 LVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIV 209
+ + L KMKE ++P+ V
Sbjct: 476 LYKKGLRREADALFRKMKEDGILPNECYV 504
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 35/252 (13%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF------------------E 43
+I+G CK+K+++ AL+L + M GI PDVV +N+L GL E
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE 251
Query: 44 IH-----------------QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
I+ +V A + ++EM R + D TY++ I GLC + E+
Sbjct: 252 IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
E+F + C D+ YS LI+G CKS ++E ++LF + + +V + VTY+I+I G
Sbjct: 312 EMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGY 371
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
G+++ A ++F M V PN+IT+ L+HG + K + +L M++ + D
Sbjct: 372 CRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADI 431
Query: 207 SIVSIVVDLLAK 218
+I++ + K
Sbjct: 432 VTYNIIIRGMCK 443
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 109/220 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+N +C+ ++ AL+ +M+ G +P +V +L G +V A +FD+M
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + Y IDGLCK+ + +++L + D+ Y+ LI GLC SGR A
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ + + + DV T++ +I +G++ +A + + +M ++ P+++T+ LI+G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
+ + E+ M K PD SI+++ K++
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSK 340
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 105/212 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++ K K+ + + L+ +M GI ++ N L Q+ A +M + G
Sbjct: 87 LLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLG 146
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
T+ ++G C+ + +++ +F + + + ++ Y+ +IDGLCKS +++ AL
Sbjct: 147 HEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNAL 206
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + + + DVVTY+ +I GL + G+ A + M + + P+V TF LI
Sbjct: 207 DLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDAC 266
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
++ S+ E +M +++ PD S+++
Sbjct: 267 VKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 20/236 (8%)
Query: 3 INGYCKNKEIEGALNLYSEMLSKGIK--------------------PDVVIHNTLFIGLF 42
I G+C ++ + Y EML GI+ P + + L +
Sbjct: 33 ICGFCFSRRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAIS 92
Query: 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
++ + + L+++MQ G+ + T I ++ C+ + ++ + L E I
Sbjct: 93 KMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIV 152
Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
+ L++G C+ R+ AL +F + +VV Y+ +I GL Q+D A DL M
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212
Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
E++ + P+V+T+ +LI G S ++ M ++ + PD + ++D K
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 84 ESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141
+S++LF +++C I +S L+ + K + ++ + L+ + + ++ T +I
Sbjct: 64 DSLDLF--FHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201
+++ Q+ A M + P+++TFG+L++GF R + + + +M
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 202 VMPDASIVSIVVDLLAKNEISLNSL 226
P+ I + ++D L K++ N+L
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNAL 206
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 116/205 (56%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+C+ + A++L S+M G +PDVVI+NT+ G +I V A +LFD M+RDG
Sbjct: 145 LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG 204
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V AD TY + GLC +G ++ L R + + ++ ++ +ID K G+ A+
Sbjct: 205 VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAM 264
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L+ + R + DV TY+ +I+GL G++D+A + M P+V+T+ TLI+GF
Sbjct: 265 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324
Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
+ + +L +M ++ ++ D
Sbjct: 325 CKSKRVDEGTKLFREMAQRGLVGDT 349
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 3/203 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING C + ++ A + M++KG PDVV +NTL G + +V+ KLF EM + G
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 344
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ DT TY I G + G + E+F + +I+ YS L+ GLC + R+E AL
Sbjct: 345 LVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKAL 401
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF ++ + + D+ TY+I+IHG+ G ++ A DLF + + P+V+++ T+I GF
Sbjct: 402 VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 461
Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
R + K L KM+E ++P
Sbjct: 462 CRKRQWDKSDLLYRKMQEDGLLP 484
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+IN C+ AL++ +M+ G +PDVV ++L G + ++V A L +M+
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D Y IDG CK G + ++VELF + D Y+ L+ GLC SGR A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + +V +V+T++ +I +G+ +A L+ +M V P+V T+ +LI+G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288
Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
R++E ++++L M K +PD + +++ K++
Sbjct: 289 LCMHGRVDEAKQMLDL---MVTKGCLPDVVTYNTLINGFCKSK 328
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 3/204 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ + K + A+ LY EM + + PDV +N+L GL +V+ A ++ D M G
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY I+G CK+ + E +LFR + D Y+ +I G ++GR + A
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+F + ++ TYSI+++GL + +++KA LF +M+++ + ++ T+ +IHG
Sbjct: 370 EIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 426
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
+I +L + K + PD
Sbjct: 427 CKIGNVEDAWDLFRSLSCKGLKPD 450
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 100/198 (50%)
Query: 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
K+K + ++L+ M GI D+ +N + L + A + +M + G D
Sbjct: 81 KSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVV 140
Query: 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
T + I+G C+ + ++++L + + D+ Y+ +IDG CK G + A+ELF +
Sbjct: 141 TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 200
Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
R + AD VTY+ ++ GL G+ A L DM + PNVITF +I F++ +
Sbjct: 201 ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 260
Query: 188 SKVIELLHKMKEKNVMPD 205
S+ ++L +M + V PD
Sbjct: 261 SEAMKLYEEMTRRCVDPD 278
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 97/207 (46%)
Query: 12 IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
+E ++L+ +M+ P +V + + + + + LF M+ G+ D +Y I
Sbjct: 50 LEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNI 109
Query: 72 FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
I+ LC+ V ++ + + E D+ S LI+G C+ R+ A++L +
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169
Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
DVV Y+ +I G G ++ A +LF ME + V + +T+ +L+ G S
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229
Query: 192 ELLHKMKEKNVMPDASIVSIVVDLLAK 218
L+ M ++++P+ + V+D+ K
Sbjct: 230 RLMRDMVMRDIVPNVITFTAVIDVFVK 256
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+ G C N +E AL L+ M I+ D+ +N + G+ +I VE A+ LF +
Sbjct: 386 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 445
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
G+ D +YT I G C+ +S L+R ++
Sbjct: 446 GLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 478
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+G CK +E A +L+ + KG+KPDVV + T+ G Q +++ L+ +MQ D
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480
Query: 61 GV 62
G+
Sbjct: 481 GL 482
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%)
Query: 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
E ++LF + + I +S ++ + KS ++ + LFH + + D+ +Y+I+I
Sbjct: 52 EEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVI 111
Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
+ L + A + M + P+V+T +LI+GF + N I+L+ KM+E
Sbjct: 112 NCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFR 171
Query: 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHER 234
PD I + ++D K + +++ F ER
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMER 202
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 10/211 (4%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+C + ++ A +++ M+SK P+VV +NTL G + +++ +LF EM + G
Sbjct: 371 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG 430
Query: 62 VAADTRTYTIFIDGL-----CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
+ +T TYT I G C N +V F+ + +I Y+ L+DGLCK+G+
Sbjct: 431 LVGNTVTYTTLIHGFFQARDCDNAQMV-----FKQMVSDGVHPNIMTYNTLLDGLCKNGK 485
Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
LE A+ +F L R + + TY+IMI G+ G+++ DLF + V P+VI + T
Sbjct: 486 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNT 545
Query: 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207
+I GF R + L KM+E +PD+
Sbjct: 546 MISGFCRKGLKEEADALFRKMREDGPLPDSG 576
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 13/237 (5%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NGYC K I A+ L +M+ G +PD + TL GLF ++ A L D M + G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY + ++GLCK G I + L + K E ++ YS +ID LCK + AL
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 280
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + +V+TYS +I L N + A L DM E + PNV+TF LI F
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238
++ + + +L +M ++++ PD S +++ F +H+R +E
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-------------GFCMHDRLDEA 384
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 108/218 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN +C+ +I AL L +M+ G +P +V ++L G ++ A L D+M
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T I GL + E+V L + C+ ++ Y +++GLCK G +++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + A+VV YS +I L D A +LF +ME V PNVIT+ +LI
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M E+ + P+ + ++D K
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 112/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ C + A L S+M+ + I P+VV N L + ++ A KL+DEM +
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY+ I+G C + + E+ +F + C ++ Y+ LI+G CK+ R++ +
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF + + LV + VTY+ +IHG + D A +F M + V PN++T+ TL+ G
Sbjct: 421 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + K + + ++ + P +I+++ + K
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 517
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 114/218 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ CK + + ALNL++EM +KG++P+V+ +++L L + A +L +M
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + T+ ID K G +VE+ +L+ + + DI YS LI+G C RL+ A
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 385
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F + +VVTY+ +I+G ++D+ +LF +M + + N +T+ TLIHGF
Sbjct: 386 HMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + + +M V P+ + ++D L KN
Sbjct: 446 FQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 483
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 112/213 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+++NG CK +I+ A NL ++M + I+ +VVI++T+ L + + A LF EM+
Sbjct: 230 VVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + TY+ I LC ++ L + K ++ ++ LID K G+L A
Sbjct: 290 GVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA 349
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+L+ + + + D+ TYS +I+G ++D+A +F M PNV+T+ TLI+G
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
F + + +EL +M ++ ++ + + ++
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 1/235 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL NG + +++ A+ L+ M+ P + N L + ++ + + L ++MQR
Sbjct: 56 ILRNGL-HSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL 114
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G++ + TY I I+ C+ I ++ L + L E I S L++G C R+ A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ L + D +T++ +IHGL+ + +A L M + PN++T+G +++G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
+ + LL+KM+ + + I S V+D L K ++L FT E +
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I G CK ++E +L+ + KG+KPDV+I+NT+ G E A LF +M+ D
Sbjct: 510 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRED 569
Query: 61 GVAADTRT 68
G D+ T
Sbjct: 570 GPLPDSGT 577
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 120/218 (55%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G C K+++ A EM+ +G+KPD ++ L GLF +++VE A + +D+ +R+G
Sbjct: 559 LISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNG 618
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY++ IDG CK E E F + + + Y+ LI C+SGRL +AL
Sbjct: 619 MLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 678
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL + + + TY+ +I G+ ++++A LF +M + PNV + LI G+
Sbjct: 679 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 738
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
++ + KV LL +M KNV P+ ++++ A++
Sbjct: 739 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 776
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 98/183 (53%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++I+G CK + E + EM+SK ++P+ V++N L ++ A +L ++M+
Sbjct: 628 VMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 687
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G++ ++ TYT I G+ + E+ LF +R+ E ++ Y+ LIDG K G++
Sbjct: 688 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 747
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + +TY++MI G DG + +A L +M E + P+ IT+ I+G
Sbjct: 748 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 807
Query: 181 FIR 183
+++
Sbjct: 808 YLK 810
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%)
Query: 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
C + + AL EML + + P + TL GL + + +A +L+ + G DT
Sbjct: 459 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518
Query: 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
RT + GLC+ G + E+ + + + C +D +Y+ LI G C +L+ A
Sbjct: 519 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 578
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
+ + L D TYSI+I GL+N ++++A + D + N + P+V T+ +I G +
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638
Query: 187 PSKVIELLHKMKEKNVMPDASI 208
+ E +M KNV P+ +
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVV 660
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 2/220 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI GYCKN + + A L EMLS G + ++ L + A + EM
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
++ T I GLCK+G +++EL+ +D + + L+ GLC++G+L+ A
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 538
Query: 122 ELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ L RG V D V+Y+ +I G ++D+A +M + + P+ T+ LI G
Sbjct: 539 RIQKEILGRGC-VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICG 597
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
+N+ + I+ K ++PD S+++D K E
Sbjct: 598 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 637
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)
Query: 1 ILINGYCKNKEIEG---ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
+LI YC + +G AL+++ + +KG+ P N L L ++ ++ + FD +
Sbjct: 206 LLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV 265
Query: 58 QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
+ GV+ D +T I+ CK G + E+V+LF + ++ ++ +IDGL GR
Sbjct: 266 CK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 324
Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
+ A + + ++TYSI++ GL ++ A+ + +M + PNVI + L
Sbjct: 325 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384
Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
I FI +K IE+ M K + +S + ++ KN
Sbjct: 385 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKN 426
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI YC++ + AL L +M KGI P+ + +L G+ I +VE A LF+EM+ +G
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 723
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + YT IDG K G +V+ L R + + Y+ +I G + G + A
Sbjct: 724 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 783
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
L + + +V D +TY I+G G
Sbjct: 784 RLLNEMREKGIVPDSITYKEFIYGYLKQG 812
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 35/239 (14%)
Query: 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGL-----------FEIHQVER-- 49
IN +CK ++E A+ L+S+M G+ P+VV NT+ GL F+ VER
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339
Query: 50 ----------------------AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87
A+ + EM + G + Y ID + G + +++E
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399
Query: 88 LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147
+ + L Y+ LI G CK+G+ + A L + + +++ +I L
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 459
Query: 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
+ D A +M ++P TLI G + + SK +EL + K + D
Sbjct: 460 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+GY K ++ L EM SK + P+ + + + G V A +L +EM+ G
Sbjct: 734 LIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 793
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVE 87
+ D+ TY FI G K G ++E+ +
Sbjct: 794 IVPDSITYKEFIYGYLKQGGVLEAFK 819
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDE 56
++I GY ++ + A L +EM KGI PD + + G + V AFK DE
Sbjct: 768 VMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 823
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+ G C+N E A++L EM + PDV +NT+ G E ++E+A +L +EM+
Sbjct: 147 ILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + T+ I ID CK G + E++ + ++ + E D+ Y+ LI G C G L+
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266
Query: 121 LELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
LF L RG +TY+ +I G GQ+ +A ++F M E V PNV T+ LI
Sbjct: 267 KALFDEVLERGDSPC-AITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
G + + + ++LL+ M EK+ P+A +I+++ L K+
Sbjct: 326 GLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD 365
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 106/212 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G CK + AL++Y ++ K D V N L + V +A +L+ ++
Sbjct: 430 LIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSK 489
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ ++ TYT IDG CK G + + L +R+ + + + Y+CL+ LCK G L+ A
Sbjct: 490 IVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAW 549
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + R DVV+++IMI G G + A L + M ++P++ T+ LI+ F
Sbjct: 550 RLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRF 609
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+++ + I KM + PDA I V+
Sbjct: 610 LKLGYLDEAISFFDKMVDSGFEPDAHICDSVL 641
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 109/216 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+ Y + ++ A + + ML +G +V HN L GL + +A L EM+R+
Sbjct: 113 LLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNS 172
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D +Y I G C+ + +++EL ++ C + + LID CK+G+++ A+
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM 232
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ L AD+V Y+ +I G + G++D+ LF ++ E +P IT+ TLI GF
Sbjct: 233 GFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
++ + + E+ M E+ V P+ + ++D L
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLC 328
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 110/210 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+ +CK +++ A+ EM G++ D+V++ +L G + +++R LFDE+
Sbjct: 217 ILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER 276
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + TY I G CK G + E+ E+F + ++ Y+ LIDGLC G+ + A
Sbjct: 277 GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L+L + + + VTY+I+I+ L DG + A ++ M++ P+ IT+ L+ G
Sbjct: 337 LQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGG 396
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVS 210
+ + +LL+ M + + D ++S
Sbjct: 397 LCAKGDLDEASKLLYLMLKDSSYTDPDVIS 426
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 2/220 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEML--SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
IL+ G C +++ A L ML S PDV+ +N L GL + +++ +A ++D +
Sbjct: 392 ILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLV 451
Query: 59 RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
A D T I ++ K G + +++EL++ + K + Y+ +IDG CK+G L
Sbjct: 452 EKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLN 511
Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178
+A L + L V Y+ ++ L +G +D+A LF +M+ + P+V++F +I
Sbjct: 512 VAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMI 571
Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
G ++ + LL M + PD S +++ K
Sbjct: 572 DGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLK 611
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 36/240 (15%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+G+CK + A L +M ++P V +N L L + +++A++LF+EMQRD
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D ++ I IDG K G DI++ L+ G+ ++G
Sbjct: 560 NFPDVVSFNIMIDGSLKAG-------------------DIKSAESLLVGMSRAG------ 594
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L D+ TYS +I+ G +D+A F M ++ P+ +++
Sbjct: 595 ----------LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYC 644
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS-FTVHERQEEVDE 240
I E K+ EL+ K+ +K+++ D + V+D + + +++ V + +EE D+
Sbjct: 645 ISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTDDKEERDK 704
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
L RG +V ++I++ GL + + KA L +M N++ P+V ++ T+I GF E
Sbjct: 134 LKRG-FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192
Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
K +EL ++MK I++D K
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCK 224
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 115/201 (57%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+C +E A+++ ++M+ GIKPDVV++ T+ L + V A LFD+M+ G
Sbjct: 148 LINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYG 207
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D YT ++GLC +G ++ L R + K + D+ ++ LID K G+ A
Sbjct: 208 IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAE 267
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL++ + R + ++ TY+ +I+G +G +D+A +F ME P+V+ + +LI+GF
Sbjct: 268 ELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGF 327
Query: 182 IRINEPSKVIELLHKMKEKNV 202
+ + +++ ++M +K +
Sbjct: 328 CKCKKVDDAMKIFYEMSQKGL 348
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 114/218 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L+N +C++ + A + +M+ G +PD+V +L G +++E A + ++M
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ D YT ID LCKNG++ ++ LF + D+ Y+ L++GLC SGR A
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDA 231
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + DV+T++ +I +G+ A +L+ +M ++APN+ T+ +LI+G
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
F + ++ + M+ K PD + +++ K
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCK 329
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 120/235 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ CKN + AL+L+ +M + GI+PDVV++ +L GL + A L M +
Sbjct: 183 IIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRK 242
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D T+ ID K G +++ EL+ + + +I Y+ LI+G C G ++ A
Sbjct: 243 IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEAR 302
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F+ + DVV Y+ +I+G ++D A +F +M + + N IT+ TLI GF
Sbjct: 303 QMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGF 362
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236
++ +P+ E+ M + V P+ ++++ L N +L F +++E
Sbjct: 363 GQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 3/221 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG C + A +L M + IKPDV+ N L + + A +L++EM R
Sbjct: 218 LVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMS 277
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+A + TYT I+G C G + E+ ++F + C D+ AY+ LI+G CK +++ A+
Sbjct: 278 IAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAM 337
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F+ + + L + +TY+ +I G G+ + A ++F M V PN+ T+ L+H
Sbjct: 338 KIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCL 397
Query: 182 IRINEPSKVIELLHKMKEK---NVMPDASIVSIVVDLLAKN 219
+ K + + M+++ V P+ ++++ L N
Sbjct: 398 CYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYN 438
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+CK K+++ A+ ++ EM KG+ + + + TL G ++ + A ++F M G
Sbjct: 323 LINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG 382
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-----IQAYSCLIDGLCKSGR 116
V + RTY + + LC NG + +++ +F ++ K E+D I Y+ L+ GLC +G+
Sbjct: 383 VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ--KREMDGVAPNIWTYNVLLHGLCYNGK 440
Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176
LE AL +F + + + ++TY+I+I G+ G++ A +LF + V PNV+T+ T
Sbjct: 441 LEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTT 500
Query: 177 LIHGFIRINEPSKVIELLHKMKEKNV 202
+I G R + L KMKE V
Sbjct: 501 MISGLFREGLKHEAHVLFRKMKEDGV 526
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-- 59
LI G+ + + A ++S M+S+G+ P++ +N L L +V++A +F++MQ+
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Query: 60 -DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118
DGVA + TY + + GLC NG + +++ +F +R + ++ I Y+ +I G+CK+G+++
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168
A+ LF SLP + +VVTY+ MI GL+ +G +AH LF M+E+ V+
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+N K K+ + +NL + G+ D+ N L + Q A +M + G
Sbjct: 78 LLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D T+T I+G C + E++ + + + + D+ Y+ +ID LCK+G + AL
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL 197
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + DVV Y+ +++GL N G+ A L M + + P+VITF LI F
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAF 257
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
++ + EL ++M ++ P+
Sbjct: 258 VKEGKFLDAEELYNEMIRMSIAPN 281
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
AL+L++ M+ P ++ L + ++ + + L D +Q GV+ D T + ++
Sbjct: 56 ALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMN 115
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
C++ + + L E DI ++ LI+G C R+E A+ + + + +
Sbjct: 116 CFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKP 175
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
DVV Y+ +I L +G ++ A LF ME + P+V+ + +L++G LL
Sbjct: 176 DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLL 235
Query: 195 HKMKEKNVMPDASIVSIVVDLLAK 218
M ++ + PD + ++D K
Sbjct: 236 RGMTKRKIKPDVITFNALIDAFVK 259
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 75/174 (43%)
Query: 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
Q A LF M +T ++ + K + L L+I+ D+ +
Sbjct: 52 QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111
Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
L++ C+S + +A + + D+VT++ +I+G +M++A + M E
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171
Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ P+V+ + T+I + + + L +M+ + PD + + +V+ L +
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNS 225
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L++G C N ++E AL ++ +M + + ++ + + G+ + +V+ A LF +
Sbjct: 430 VLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSK 489
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
GV + TYT I GL + G E+ LFR ++
Sbjct: 490 GVKPNVVTYTTMISGLFREGLKHEAHVLFRKMK 522
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 4/209 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+C + + A ++ M+SKG PDVV +NTL G + +VE KLF EM G
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEI 119
+ D TY I G C+ G + + ++F R++ C + DI Y+ L+D LC +G++E
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNVAQKVFN--RMVDCGVSPDIVTYNILLDCLCNNGKIEK 412
Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
AL + L + + D++TY+I+I GL ++ +A LF + V P+ I + T+I
Sbjct: 413 ALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASI 208
G R + +L +MKE MP I
Sbjct: 473 GLCRKGLQREADKLCRRMKEDGFMPSERI 501
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 110/218 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+ING CKN+++ AL ++ M KGI+ D V +NTL GL + A +L +M +
Sbjct: 190 VINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK 249
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + +T ID K G ++E+ L++ + ++ Y+ LI+G C G L A
Sbjct: 250 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 309
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F + DVVTY+ +I G +++ LF +M + + T+ TLIHG+
Sbjct: 310 YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + + ++ ++M + V PD +I++D L N
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 407
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 106/205 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C+ + A++L M G P+VVI+NT+ GL + + A ++F M++ G
Sbjct: 155 LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 214
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ AD TY I GL +G ++ L R + K + ++ ++ LID K G L A
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 274
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L+ + R +V +V TY+ +I+G G + A +F M P+V+T+ TLI GF
Sbjct: 275 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 334
Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
+ ++L +M + ++ DA
Sbjct: 335 CKSKRVEDGMKLFCEMTYQGLVGDA 359
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 103/220 (46%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+ +C+ + AL L +M+ G +P +V +L G + ++ + A L D M
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + Y I+GLCKN + ++E+F + D Y+ LI GL SGR A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + +V+ ++ +I +G + +A +L+ +M +V PNV T+ +LI+G
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
F + M K PD + ++ K++
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSK 338
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 35/230 (15%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
+ + A +L+ EML P +V + + ++++ + L+ +M+ G++ D ++T
Sbjct: 59 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118
Query: 71 IFI-----------------------------------DGLCKNGYIVESVELFRTLRIL 95
I I +G C+ E+V L ++
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178
Query: 96 KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
++ Y+ +I+GLCK+ L ALE+F+ + + + AD VTY+ +I GL N G+ A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238
Query: 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
L DM + + PNVI F LI F++ + L +M ++V+P+
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPN 288
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++ C N +IE AL + ++ + D++ +N + GL +++ A+ LF + R
Sbjct: 399 ILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRK 458
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
GV D Y I GLC+ G E+ +L R ++
Sbjct: 459 GVKPDAIAYITMISGLCRKGLQREADKLCRRMK 491
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%)
Query: 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172
K + +I + L+H + + D+ +++I+IH ++ A L M + P+++
Sbjct: 91 KMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIV 150
Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232
T G+L++GF + N + + L+ M +P+ I + V++ L KN N+L F
Sbjct: 151 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 210
Query: 233 ERQ 235
E++
Sbjct: 211 EKK 213
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I G C+ +++ A L+ + KG+KPD + + T+ GL A KL M+ D
Sbjct: 434 IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 493
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRT 91
G R Y D ++ Y S EL +
Sbjct: 494 GFMPSERIY----DETLRDHYTSLSAELIKA 520
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 114/209 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING C + I+ A ++ M+SKG DVV +NTL G + +VE KLF EM + G
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ ++T TY I G + G + ++ E F + DI Y+ L+ GLC +G LE AL
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F + + + D+VTY+ +I G+ G++++A LF + + P+++T+ T++ G
Sbjct: 421 VIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVS 210
+V L KMK++ +M + +S
Sbjct: 481 CTKGLLHEVEALYTKMKQEGLMKNDCTLS 509
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 122/253 (48%), Gaps = 35/253 (13%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C+ + A++L +M+ G KPD+V +N + L + +V AF F E++R G
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220
Query: 62 VAADTRTYTIFIDGLC-----------------------------------KNGYIVESV 86
+ + TYT ++GLC KNG ++E+
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
ELF + + + DI YS LI+GLC R++ A ++F + +ADVV+Y+ +I+G
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
+++ LF +M + + N +T+ TLI GF + + K E +M + PD
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400
Query: 207 SIVSIVVDLLAKN 219
+I++ L N
Sbjct: 401 WTYNILLGGLCDN 413
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 118/218 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG C + A L S+M+ K I P+V+ ++ L + +V A +LF+EM R
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY+ I+GLC + I E+ ++F + C D+ +Y+ LI+G CK+ R+E +
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF + + LV++ VTY+ +I G + G +DKA + F M+ ++P++ T+ L+ G
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
E K + + M+++ + D + V+ + K
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 448
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 111/204 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++ + KN ++ A L+ EM+ I PD+V +++L GL +++ A ++FD M G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
AD +Y I+G CK + + ++LFR + + Y+ LI G ++G ++ A
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E F + + D+ TY+I++ GL ++G+++KA +F DM++ + +++T+ T+I G
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGM 445
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
+ + + L + K + PD
Sbjct: 446 CKTGKVEEAWSLFCSLSLKGLKPD 469
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 3/197 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+IN +C ++ AL++ +ML G +PD V +L G ++V A L D+M
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D Y ID LCK + ++ + F+ + ++ Y+ L++GLC S R A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + +V+TYS ++ +G++ +A +LF +M ++ P+++T+ +LI+G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304
Query: 181 FI---RINEPSKVIELL 194
RI+E +++ +L+
Sbjct: 305 LCLHDRIDEANQMFDLM 321
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 107/216 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++ K K+ + ++L +M GI+ D+ N + QV A + +M + G
Sbjct: 91 LLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLG 150
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D T ++G C+ + ++V L + + + DI AY+ +ID LCK+ R+ A
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ F + R + +VVTY+ +++GL N + A L DM + + PNVIT+ L+ F
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
++ + + EL +M ++ PD S +++ L
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 306
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 98/209 (46%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
++ A++L+S+M+ P +V N L + ++ + + L +M+ G+ D T+
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
I I+ C + ++ + + L E D L++G C+ R+ A+ L +
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D+V Y+ +I L +++ A D F ++E + PNV+T+ L++G + S
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKN 219
LL M +K + P+ S ++D KN
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKN 273
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+ G C N E+E AL ++ +M + + D+V + T+ G+ + +VE A+ LF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
G+ D TYT + GLC G + E L+ ++
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
D+ T++I+I+ Q+ A + M + P+ +T G+L++GF R N S + L+
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178
Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
KM E PD + ++D L K + ++ F ER+
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
D +++ A DLF DM ++ P+++ F L+ +++ + VI L KM+ + D
Sbjct: 63 DIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 122
Query: 209 VSIVVD 214
+IV++
Sbjct: 123 FNIVIN 128
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 114/206 (55%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI GYC+ I A+NL +EML +G DVV +NT+ GL + + A KLF+EM
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ D+ T TI IDG CK G + ++ELF+ ++ + LD+ Y+ L+DG K G ++ A
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
E++ + ++ ++YSI+++ L + G + +A ++ +M + P V+ ++I G
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
+ R S L KM + +PD
Sbjct: 595 YCRSGNASDGESFLEKMISEGFVPDC 620
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ Y +E A L + M KG P V +NT+ GL + + ERA ++F EM R G
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
++ D+ TY + CK G +VE+ ++F +R D+ +S ++ +SG L+ AL
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
F+S+ L+ D V Y+I+I G G + A +L +M + A +V+T+ T++HG
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
+ + +L ++M E+ + PD+ ++I++D
Sbjct: 456 CKRKMLGEADKLFNEMTERALFPDSYTLTILID 488
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 120/235 (51%), Gaps = 5/235 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+G+CK ++ A+ L+ +M K I+ DVV +NTL G ++ ++ A +++ +M
Sbjct: 485 ILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK 544
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ +Y+I ++ LC G++ E+ ++ + + + + +I G C+SG
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG 604
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE--NAVAPNVITFGTLI 178
+ V D ++Y+ +I+G + M KA L MEE + P+V T+ +++
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSIL 664
Query: 179 HGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233
HGF R N+ + +L KM E+ V PD S + +++ + N +F +H+
Sbjct: 665 HGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQD---NLTEAFRIHD 716
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 106/211 (50%)
Query: 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
CK ++ ++S+M S+ + PD+V +++ +++A F+ ++ G+ D
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410
Query: 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
YTI I G C+ G I ++ L + C +D+ Y+ ++ GLCK L A +LF+
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
+ L D T +I+I G G + A +LF M+E + +V+T+ TL+ GF ++ +
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
E+ M K ++P SI+V+ L
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALC 561
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 100/208 (48%)
Query: 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
+ ++ ++ AL ++ + G+ PD VI+ L G + A L +EM + G A D
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444
Query: 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125
TY + GLCK + E+ +LF + D + LIDG CK G L+ A+ELF
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504
Query: 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN 185
+ + DVVTY+ ++ G G +D A +++ DM + P I++ L++
Sbjct: 505 KMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564
Query: 186 EPSKVIELLHKMKEKNVMPDASIVSIVV 213
++ + +M KN+ P I + ++
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMI 592
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 109/219 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI Y + +++ A ++ + SKG + N L L I VE A+ ++ E+ R
Sbjct: 170 LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + T I ++ LCK+G + + ++ DI Y+ LI G +E A
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
EL +++P V TY+ +I+GL G+ ++A ++F +M + ++P+ T+ +L+
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + + ++ M+ ++V+PD S ++ L ++
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRS 388
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 36/66 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+++G+C+ +++ A + +M+ +G+ PD + + G + AF++ DEM + G
Sbjct: 663 ILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722
Query: 62 VAADTR 67
+ D +
Sbjct: 723 FSPDDK 728
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%)
Query: 97 CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156
C + + LI ++ +L A E F L + + +I L G ++ A
Sbjct: 161 CGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAW 220
Query: 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
++ ++ + V NV T +++ + + KV L +++EK V PD
Sbjct: 221 GVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPD 269
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 114/206 (55%), Gaps = 3/206 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++I+GYCK EI AL++ M + PDVV +NT+ L + ++++A ++ D M +
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
D TYTI I+ C++ + +++L +R C D+ Y+ L++G+CK GRL+ A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++ + +P +V+T++I++ + + G+ A L DM +P+V+TF LI+
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
R + I++L KM + P++
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNS 379
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 116/218 (53%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L+NG CK ++ A+ ++M S G +P+V+ HN + + + A KL +M R
Sbjct: 279 VLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + T+ I I+ LC+ G + ++++ + C+ + +Y+ L+ G CK +++ A
Sbjct: 339 GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRA 398
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+E + D+VTY+ M+ L DG+++ A ++ + +P +IT+ T+I G
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + K I+LL +M+ K++ PD S +V L++
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 114/217 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN C+ + A+++ +M G +P+ + +N L G + +++RA + + M
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D TY + LCK+G + ++VE+ L C + Y+ +IDGL K+G+ A
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++L + L D +TYS ++ GL +G++D+A F + E + PN +TF +++ G
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
+ + + I+ L M + P+ + +I+++ LA
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 110/206 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++G+CK K+++ A+ M+S+G PD+V +NT+ L + +VE A ++ +++ G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY IDGL K G ++++L +R + D YS L+ GL + G+++ A+
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ FH R + + VT++ ++ GL Q D+A D + M PN ++ LI G
Sbjct: 505 KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Query: 182 IRINEPSKVIELLHKMKEKNVMPDAS 207
+ +ELL+++ K +M +S
Sbjct: 565 AYEGMAKEALELLNELCNKGLMKKSS 590
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 109/218 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++ C + +++ A+ + ML + PDV+ + L V A KL DEM+ G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY + ++G+CK G + E+++ + C+ ++ ++ ++ +C +GR A
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + R VVT++I+I+ L G + +A D+ M ++ PN +++ L+HGF
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + + IE L +M + PD + ++ L K+
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 3/217 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+C+ + A + + G PDV+ +N + G + ++ A + D M
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS--- 199
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V+ D TY + LC +G + +++E+ + C D+ Y+ LI+ C+ + A+
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + DVVTY+++++G+ +G++D+A DM + PNVIT ++
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+LL M K P +I+++ L +
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 3/198 (1%)
Query: 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
+ E+E M+ G PD++ TL G + + +A K+ + ++ G D
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
TY + I G CK G I ++ + + + D+ Y+ ++ LC SG+L+ A+E+ +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
+ DV+TY+I+I D + A L +M + P+V+T+ L++G +
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290
Query: 188 SKVIELLHKMKEKNVMPD 205
+ I+ L+ M P+
Sbjct: 291 DEAIKFLNDMPSSGCQPN 308
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
DI + LI G C+ G+ A ++ L V DV+TY++MI G G+++ A +
Sbjct: 136 DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVL 195
Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
M +V+P+V+T+ T++ + + +E+L +M +++ PD +I+++ ++
Sbjct: 196 DRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209
G++++ +M + P++I TLI GF R+ + K ++L ++ +PD
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175
Query: 210 SIVVDLLAK 218
++++ K
Sbjct: 176 NVMISGYCK 184
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 118/219 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LINGYCK +E AL L+ EM S G+ PD++ +N + GLF+ + A +L+ + G
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY I + GLCKN +++++F+ L ++ +L+ + ++ +ID L K GR + A
Sbjct: 612 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LF + LV + TY +M + G +++ LFL ME+N + ++
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 731
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
++ E ++ L + EK+ +AS S+ +DLL+ +
Sbjct: 732 LQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGK 770
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 116/218 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+ING+ K + + A + Y EML +GI PDVV +N++ L + +++A ++ + M ++G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D TY + G C +G E++ + +R E D+ YS L+D LCK+GR A
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F S+ + L ++ TY ++ G G + + H L M N + P+ F LI +
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + + + + KM+++ + P+A V+ +L K+
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 125/223 (56%)
Query: 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
CK+ +E A+ + +M+ +G+ P +++N+L GL ++ ERA +L EM G+ +T
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476
Query: 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
+ ID CK G ++ES +LF + + + ++ Y+ LI+G C +G+++ A++L
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
+ L + VTYS +I+G +M+ A LF +ME + V+P++IT+ ++ G +
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596
Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
+ EL ++ E + S +I++ L KN+++ ++L F
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 1/222 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LINGYC +++ A+ L S M+S G+KP+ V ++TL G +I ++E A LF EM+ G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V+ D TY I + GL + + EL+ + ++++ Y+ ++ GLCK+ + AL
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F +L L + T++IMI L G+ D+A DLF+ N + PN T+ +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEIS 222
I ++ +L M++ D+ +++ +V +LL + EI+
Sbjct: 697 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 6/224 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKL-FDEMQR 59
ILI C+ ++ ++ KG + D + L GL + A + M
Sbjct: 92 ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151
Query: 60 DGVAADTRTYTIFIDGLCKNGYIVESVELFRTL---RILKCELDIQAYSCLIDGLCKSGR 116
G + +Y I + GLC E++EL + R D+ +Y+ +I+G K G
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211
Query: 117 LEIALELFHS-LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175
+ A +H L RG+L DVVTY+ +I L MDKA ++ M +N V P+ +T+
Sbjct: 212 SDKAYSTYHEMLDRGIL-PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270
Query: 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+++HG+ +P + I L KM+ V PD S+++D L KN
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 111/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G C + E A L EML +GI + + N++ + +V + KLF+ M R G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + TY I+G C G + E+++L + + + + YS LI+G CK R+E AL
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + D++TY+I++ GL+ + A +L++ + E+ + T+ ++HG
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ +++ + ++ +A +I++D L K
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLK 663
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 3/203 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L++ CKN A ++ M +G+KP++ + TL G + L D M R+
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ D ++I I K G + +++ +F +R + Y +I LCKSGR+E A
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ F + L + Y+ +IHGL + ++A +L L+M + + N I F ++I
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485
Query: 181 FI---RINEPSKVIELLHKMKEK 200
R+ E K+ EL+ ++ K
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVK 508
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 48 ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYS 105
E A +FDE+ R G A + + ++ R R E+ D+ Y
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYG 91
Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-DMEE 164
LI C++GRL++ ++ + D + ++ ++ GL D + A D+ L M E
Sbjct: 92 ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151
Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
PNV ++ L+ G N + +ELLH M +
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+++G CKNK + AL ++ + +K + N + L ++ + + A LF +
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD 100
G+ + TY + + + G + E +LF ++ C +D
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 720
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 1/222 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI CK KE E A M +G KPDV ++T+ L + +++ A +LFDEM
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
GVA D Y I IDG K ++EL+ R L +++ ++ +I GL K GR++
Sbjct: 214 GVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDD 273
Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
L+++ + + D+ TYS +IHGL + G +DKA +F +++E + +V+T+ T++
Sbjct: 274 CLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLG 333
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221
GF R + + +EL M+ KN + S ++ LL +I
Sbjct: 334 GFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKI 375
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 109/204 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ CK K +E A NL EM G++ + + N L GL ++ A EM ++G
Sbjct: 435 IIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNG 494
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+Y I I GLCK G E+ + + + D++ YS L+ GLC+ ++++AL
Sbjct: 495 CRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLAL 554
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL+H + L DV+ ++I+IHGL + G++D A + +ME N++T+ TL+ GF
Sbjct: 555 ELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGF 614
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
++ + ++ + M + + PD
Sbjct: 615 FKVGDSNRATVIWGYMYKMGLQPD 638
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 119/221 (53%), Gaps = 2/221 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
ILI+G+ K K+ + A+ L+ +L + P+V HN + GL + +V+ K+++ M++
Sbjct: 224 ILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQ 283
Query: 60 DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
+ D TY+ I GLC G + ++ +F L K +D+ Y+ ++ G C+ G+++
Sbjct: 284 NEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKE 343
Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
+LEL+ + V ++V+Y+I+I GL +G++D+A ++ M A + T+G IH
Sbjct: 344 SLELWRIMEHKNSV-NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIH 402
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
G +K + ++ +++ D + ++D L K +
Sbjct: 403 GLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKK 443
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 1/219 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++ G+C+ +I+ +L L+ M K ++V +N L GL E +++ A ++ M G
Sbjct: 331 MLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKG 389
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
AAD TY IFI GLC NGY+ +++ + + + LD+ AY+ +ID LCK RLE A
Sbjct: 390 YAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEAS 449
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + + + + + +I GL D ++ +A +M +N P V+++ LI G
Sbjct: 450 NLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGL 509
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
+ + + + +M E PD SI++ L ++
Sbjct: 510 CKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDR 548
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 103/212 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G ++ + A EM G +P VV +N L GL + + A EM +G
Sbjct: 470 LIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENG 529
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D +TY+I + GLC++ I ++EL+ E D+ ++ LI GLC G+L+ A+
Sbjct: 530 WKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAM 589
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ ++ A++VTY+ ++ G + G ++A ++ M + + P++I++ T++ G
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGL 649
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
S +E + + P +I+V
Sbjct: 650 CMCRGVSYAMEFFDDARNHGIFPTVYTWNILV 681
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 114/219 (52%), Gaps = 1/219 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+G K ++ L ++ M + D+ +++L GL + V++A +F+E+
Sbjct: 260 IMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDER 319
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ D TY + G C+ G I ES+EL+R + K ++I +Y+ LI GL ++G+++ A
Sbjct: 320 KASIDVVTYNTMLGGFCRCGKIKESLELWRIME-HKNSVNIVSYNILIKGLLENGKIDEA 378
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++ +P AD TY I IHGL +G ++KA + ++E + +V + ++I
Sbjct: 379 TMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDC 438
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + L+ +M + V ++ + + ++ L ++
Sbjct: 439 LCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRD 477
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 87/182 (47%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI G CK + A EML G KPD+ ++ L GL +++ A +L+ + +
Sbjct: 504 ILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQS 563
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ D + I I GLC G + +++ + + C ++ Y+ L++G K G A
Sbjct: 564 GLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRA 623
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++ + + L D+++Y+ ++ GL + A + F D + + P V T+ L+
Sbjct: 624 TVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRA 683
Query: 181 FI 182
+
Sbjct: 684 VV 685
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 77/148 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+ G C++++I+ AL L+ + L G++ DV++HN L GL + +++ A + M+
Sbjct: 539 ILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHR 598
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
A+ TY ++G K G + ++ + + + DI +Y+ ++ GLC + A
Sbjct: 599 NCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYA 658
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYN 148
+E F + V T++I++ + N
Sbjct: 659 MEFFDDARNHGIFPTVYTWNILVRAVVN 686
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 87/196 (44%), Gaps = 1/196 (0%)
Query: 26 GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85
G V+++ + L E V ++ + ++ D I KN ++
Sbjct: 38 GYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQA 97
Query: 86 VELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
+++F+ +R I CE I++Y+ L++ ++ + LF + ++ TY+++I
Sbjct: 98 LDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIK 157
Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
+ +KA M + P+V ++ T+I+ + + +EL +M E+ V P
Sbjct: 158 MSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAP 217
Query: 205 DASIVSIVVDLLAKNE 220
D + +I++D K +
Sbjct: 218 DVTCYNILIDGFLKEK 233
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+GYCK + A LY E+L + P+VV+ TL G + ++ A LF M + G
Sbjct: 275 MIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFG 334
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + Y I G CK+G ++E+V L + L D+ Y+ LI+GLC ++ A
Sbjct: 335 VDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEAN 394
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + TY+ +IHG + M++A DL +M + V PN+ITF TLI G+
Sbjct: 395 RLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGY 454
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
+ + + L +M K ++PD + ++D
Sbjct: 455 CNVRDIKAAMGLYFEMTIKGIVPDVVTYTALID 487
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 113/217 (52%), Gaps = 4/217 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+GYCK +E AL+L SEM + G++P+++ +TL G + ++ A L+ EM G
Sbjct: 415 LIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKG 474
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TYT ID K + E++ L+ + + ++CL+DG K GRL +A+
Sbjct: 475 IVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAI 534
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ + + + V ++ +I GL +G + +A F DM + P++ ++ +++ G
Sbjct: 535 DFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGH 594
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ + + L M + ++P+ +V LLA+
Sbjct: 595 LQEKRITDTMMLQCDMIKTGILPNL----LVNQLLAR 627
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 110/216 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NG + + + Y M+S+G+ PDV I+ LF F+ + KL DEM G
Sbjct: 170 ILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLG 229
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + YTI+I LC++ + E+ ++F ++ ++ YS +IDG CK+G + A
Sbjct: 230 IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAY 289
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L+ + L+ +VV + ++ G ++ A LF+ M + V PN+ + LIHG
Sbjct: 290 GLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGH 349
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
+ + + LL +M+ N+ PD +I+++ L
Sbjct: 350 CKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLC 385
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 104/190 (54%)
Query: 18 LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
L EM S GIKP+V I+ + L +++E A K+F+ M++ GV + TY+ IDG C
Sbjct: 221 LLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYC 280
Query: 78 KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
K G + ++ L++ + + + ++ + L+DG CK+ L A LF + + + ++
Sbjct: 281 KTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340
Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
Y+ +IHG G M +A L +ME ++P+V T+ LI+G ++ ++ L KM
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKM 400
Query: 198 KEKNVMPDAS 207
K + + P ++
Sbjct: 401 KNERIFPSSA 410
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 108/217 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++G+CK +E+ A +L+ M+ G+ P++ ++N L G + + A L EM+
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLN 369
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
++ D TYTI I+GLC + E+ LF+ ++ + Y+ LI G CK +E AL
Sbjct: 370 LSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQAL 429
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + +++T+S +I G N + A L+ +M + P+V+T+ LI
Sbjct: 430 DLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAH 489
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + + L M E + P+ + +VD K
Sbjct: 490 FKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWK 526
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 110/218 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+CK+ + A+ L SEM S + PDV + L GL QV A +LF +M+ +
Sbjct: 345 LIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNER 404
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY I G CK + ++++L + E +I +S LIDG C ++ A+
Sbjct: 405 IFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAM 464
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L+ + +V DVVTY+ +I + + M +A L+ DM E + PN TF L+ GF
Sbjct: 465 GLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGF 524
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ S I+ + ++ + + +++ L +N
Sbjct: 525 WKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQN 562
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 1/223 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILING C ++ A L+ +M ++ I P +N+L G + + +E+A L EM
Sbjct: 379 ILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTAS 438
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + T++ IDG C I ++ L+ + I D+ Y+ LID K ++ A
Sbjct: 439 GVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEA 498
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L+ + + + T++ ++ G + +G++ A D + + + N + F LI G
Sbjct: 499 LRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEG 558
Query: 181 FIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEIS 222
+ + M+ + PD S VS++ L + I+
Sbjct: 559 LCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRIT 601
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%)
Query: 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159
D+ Y L K G +L + + +V Y+I I L D +M++A +F
Sbjct: 198 DVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMF 257
Query: 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
M+++ V PN+ T+ +I G+ + + L ++ ++P+ + +VD K
Sbjct: 258 ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCK 316
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 111/203 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+CK +I A + EM S+ I PDV+ + + G +I + A KLF EM G
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D+ T+T I+G CK G++ ++ + + C ++ Y+ LIDGLCK G L+ A
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL H + + L ++ TY+ +++GL G +++A L + E + + +T+ TL+ +
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 536
Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
+ E K E+L +M K + P
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQP 559
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 116/212 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+G+C+ ++ A L+ EM KG++PD V L G + ++ AF++ + M + G
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TYT IDGLCK G + + EL + + + +I Y+ +++GLCKSG +E A+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L L AD VTY+ ++ G+MDKA ++ +M + P ++TF L++GF
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+LL+ M K + P+A+ + +V
Sbjct: 572 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 112/218 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NGYC+ E++ L M KG+KP+ I+ ++ L I ++ A + F EM R G
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 346
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ DT YT IDG CK G I + + F + D+ Y+ +I G C+ G + A
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 406
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+LFH + L D VT++ +I+G G M A + M + +PNV+T+ TLI G
Sbjct: 407 KLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 466
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + ELLH+M + + P+ + +V+ L K+
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
CK E E A +SEM+ +GI PD V++ TL G + + A K F EM + D
Sbjct: 330 CKLAEAEEA---FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386
Query: 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
TYT I G C+ G +VE+ +LF + E D ++ LI+G CK+G ++ A + +
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
+ + +VVTY+ +I GL +G +D A++L +M + + PN+ T+ ++++G +
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ ++L+ + + + D + ++D K+
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 102/205 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LINGYCK ++ A +++ M+ G P+VV + TL GL + ++ A +L EM + G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY ++GLCK+G I E+V+L D Y+ L+D CKSG ++ A
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+ + L +VT++++++G G ++ L M +APN TF +L+ +
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606
Query: 182 IRINEPSKVIELLHKMKEKNVMPDA 206
N + M + V PD
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDG 631
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 110/234 (47%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G CK +++ A L EM G++P++ +N++ GL + +E A KL E + G
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ ADT TYT +D CK+G + ++ E+ + + + I ++ L++G C G LE
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + + + T++ ++ + A ++ DM V P+ T+ L+ G
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 641
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
+ + L +MK K S S+++ K + L + F R+
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 94/192 (48%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A+ ++ E G+ +V +N + + ++ +++ A L M+ G D +Y+ ++
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134
G C+ G + + +L ++ + + Y +I LC+ +L A E F + R ++
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
D V Y+ +I G G + A F +M + P+V+T+ +I GF +I + + +L
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 195 HKMKEKNVMPDA 206
H+M K + PD+
Sbjct: 410 HEMFCKGLEPDS 421
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 99/219 (45%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NG CK+ IE A+ L E + G+ D V + TL + ++++A ++ EM G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ T+ + ++G C +G + + +L + + ++ L+ C L+ A
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAAT 616
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++ + + D TY ++ G M +A LF +M+ + +V T+ LI GF
Sbjct: 617 AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
++ + + E+ +M+ + + D I D K +
Sbjct: 677 LKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGK 715
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 63 AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG-RLEIAL 121
+D R + +F L G + E+ +F + L + + + + L K + A+
Sbjct: 172 GSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI 231
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F P + +V +Y+I+IH + G++ +AH L L ME P+VI++ T+++G+
Sbjct: 232 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
R E KV +L+ MK K + P++ I ++ LL +
Sbjct: 292 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 328
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L+NG+C + +E L + ML+KGI P+ N+L + ++ A ++ +M
Sbjct: 566 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV D +TY + G CK + E+ LF+ ++ + + YS LI G K + A
Sbjct: 626 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 685
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
E+F + R L AD + Y + D D ++ EN
Sbjct: 686 REVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 730
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 100/212 (47%), Gaps = 2/212 (0%)
Query: 25 KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY-IV 83
K D + + F L + + A ++F++M G+ + +++ L K+ Y
Sbjct: 169 KDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTA 228
Query: 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143
++ +FR + ++ +Y+ +I +C+ GR++ A L + DV++YS ++
Sbjct: 229 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 288
Query: 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203
+G G++DK L M+ + PN +G++I RI + ++ E +M + ++
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGIL 348
Query: 204 PDASIVSIVVDLLAK-NEISLNSLPSFTVHER 234
PD + + ++D K +I S + +H R
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 112/212 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG CKN ++ AL + EM +KG+K D+ + L G + +E A LF E+ +G
Sbjct: 625 LMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEG 684
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ Y I G G +V +++L++ + D+ Y+ LIDGL K G L +A
Sbjct: 685 LNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILAS 744
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL+ + LV D + Y+++++GL GQ K +F +M++N V PNV+ + +I G
Sbjct: 745 ELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGH 804
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
R + L +M +K ++PD + I+V
Sbjct: 805 YREGNLDEAFRLHDEMLDKGILPDGATFDILV 836
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 107/192 (55%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+CK +E A L+SE+L +G+ P I+N+L G + + A L+ +M +DG
Sbjct: 660 LIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDG 719
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TYT IDGL K+G ++ + EL+ ++ + D Y+ +++GL K G+ +
Sbjct: 720 LRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVV 779
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F + + + +V+ Y+ +I G Y +G +D+A L +M + + P+ TF L+ G
Sbjct: 780 KMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQ 839
Query: 182 IRINEPSKVIEL 193
+ +P + L
Sbjct: 840 VGNLQPVRAASL 851
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 1/218 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLS-KGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+ING CK + A L + M+ K + + +N++ G F+ +++ A ++EM +
Sbjct: 554 IINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGN 613
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G++ + TYT ++GLCKN + +++E+ ++ +LDI AY LIDG CK +E A
Sbjct: 614 GISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESA 673
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
LF L L Y+ +I G N G M A DL+ M ++ + ++ T+ TLI G
Sbjct: 674 SALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDG 733
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ EL +M+ ++PD I +++V+ L+K
Sbjct: 734 LLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSK 771
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 114/218 (52%), Gaps = 1/218 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+++ CK + + A L S+M S+GI P+VV +N + +G ++ A +F + G
Sbjct: 449 ILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKG 508
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY+I IDG +N ++E+ + E++ Y +I+GLCK G+ A
Sbjct: 509 LKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKAR 568
Query: 122 ELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
EL ++ L ++Y+ +I G + +G+MD A + +M N ++PNVIT+ +L++G
Sbjct: 569 ELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNG 628
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ N + +E+ +MK K V D ++D K
Sbjct: 629 LCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 3/220 (1%)
Query: 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
K ++ A+ L EMLS GI +VV +L G + + + A LFD+M+++G + ++
Sbjct: 316 KQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSV 375
Query: 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF-HS 126
T+++ I+ KNG + +++E ++ + +L + +I G K + E AL+LF S
Sbjct: 376 TFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDES 435
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186
G +A+V + ++ L G+ D+A +L ME + PNV+++ ++ G R
Sbjct: 436 FETG--LANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKN 493
Query: 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
+ + EK + P+ SI++D +N N+L
Sbjct: 494 MDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNAL 533
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 1/200 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI + KN E+E AL Y +M G+ P V +T+ G + + E A KLFDE
Sbjct: 379 VLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFET 438
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+A TI + LCK G E+ EL + ++ +Y+ ++ G C+ +++A
Sbjct: 439 GLANVFVCNTI-LSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLA 497
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+F ++ L + TYSI+I G + + A ++ M + + N + + T+I+G
Sbjct: 498 RIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIING 557
Query: 181 FIRINEPSKVIELLHKMKEK 200
++ + SK ELL M E+
Sbjct: 558 LCKVGQTSKARELLANMIEE 577
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 1/219 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+N Y K+++ + A+++ ++ML + P N L + + + A +L+ M G
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIG 228
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V D T + + + E++E+ E D YS + CK+ L +A
Sbjct: 229 VDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMAN 288
Query: 122 ELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + + V TY+ +I G MD A L +M + ++ NV+ +LI G
Sbjct: 289 SLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITG 348
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ N+ + L KM+++ P++ S++++ KN
Sbjct: 349 HCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKN 387
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L+ + ++ AL + S + +G +PD ++++ + + A L EM+
Sbjct: 238 LLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEK 297
Query: 61 GVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
+ ++ TYT I K G + +++ L + +++ A + LI G CK+ L
Sbjct: 298 KLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVS 357
Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
AL LF + + + VT+S++I +G+M+KA + + ME + P+V T+I
Sbjct: 358 ALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQ 417
Query: 180 GFIRINEPSKVIELL 194
G+++ + + ++L
Sbjct: 418 GWLKGQKHEEALKLF 432
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 1/191 (0%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A LYS M++ G+ D V L + A ++ G D+ Y++ +
Sbjct: 217 AKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQ 276
Query: 75 GLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
CK + + L R ++ K C + Y+ +I K G ++ A+ L + +
Sbjct: 277 ACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGIS 336
Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
+VV + +I G + + A LF ME+ +PN +TF LI F + E K +E
Sbjct: 337 MNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEF 396
Query: 194 LHKMKEKNVMP 204
KM+ + P
Sbjct: 397 YKKMEVLGLTP 407
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+++NG K + + ++ EM + P+V+I+N + G + ++ AF+L DEM
Sbjct: 764 VIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDK 823
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVEL 88
G+ D T+ I + G N V + L
Sbjct: 824 GILPDGATFDILVSGQVGNLQPVRAASL 851
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 117/213 (54%), Gaps = 1/213 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+G+ K+ + G++ ++ EML + +KP+V+ +N+L GL ++ A + D+M
Sbjct: 301 ILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSA 360
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV + TY I+G CKN + E++++F +++ + Y+ LID CK G+++
Sbjct: 361 GVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG 420
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + R +V DV TY+ +I GL +G ++ A LF + + P+++TF L+ G
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEG 479
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ R E K LL +M + + P +IV+
Sbjct: 480 YCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVM 512
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 2/212 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+CKN ++ AL+++ + +G P ++N L ++ +++ F L +EM+R+G
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TY I GLC+NG I + +LF L K D+ + L++G C+ G A
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TSKGLPDLVTFHILMEGYCRKGESRKAA 490
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIHG 180
L + + L +TY+I++ G +G + A ++ ME E + NV ++ L+ G
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQG 550
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
+ + + LL++M EK ++P+ IV
Sbjct: 551 YSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 113/222 (50%), Gaps = 3/222 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFK---LFDEM 57
++IN CK ++ A ++ +M G P+VV +NTL G ++ + +K + EM
Sbjct: 228 VVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM 287
Query: 58 QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
+ V+ + T+ I IDG K+ + S+++F+ + + ++ +Y+ LI+GLC G++
Sbjct: 288 VENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKI 347
Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
A+ + + + +++TY+ +I+G + + +A D+F ++ P + L
Sbjct: 348 SEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNML 407
Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
I + ++ + L +M+ + ++PD + ++ L +N
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 114/241 (47%), Gaps = 3/241 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L+ Y N E + G K + L I L + ++ ++ EM R
Sbjct: 158 MLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRR 217
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK---SGRL 117
+ + T+ + I+ LCK G + ++ ++ +++ C ++ +Y+ LIDG CK +G++
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKM 277
Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
A + + + ++ T++I+I G + D + + +F +M + V PNVI++ +L
Sbjct: 278 YKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337
Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
I+G + S+ I + KM V P+ + +++ KN++ +L F + Q
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397
Query: 238 V 238
V
Sbjct: 398 V 398
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G C+N IE A L+ ++ SKG+ PD+V + L G + +A L EM + G
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMG 500
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTL-RILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ TY I + G CK G + + + + + + +++ +Y+ L+ G + G+LE A
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDA 560
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDG 150
L + + LV + +TY I+ + + G
Sbjct: 561 NMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 90/190 (47%), Gaps = 8/190 (4%)
Query: 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
++H + A + D + + + AD + + N E F+ +L
Sbjct: 135 QVHSIFHAISMCDNVCVNSIIAD-----MLVLAYANNSRFELGFEAFKRSGYYGYKLSAL 189
Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
+ L+ L K R ++ + R + +V T++++I+ L G+M+KA D+ DM
Sbjct: 190 SCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDM 249
Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIE---LLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ +PNV+++ TLI G+ ++ K+ + +L +M E +V P+ + +I++D K+
Sbjct: 250 KVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKD 309
Query: 220 EISLNSLPSF 229
+ S+ F
Sbjct: 310 DNLPGSMKVF 319
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEM-LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
I++ GYCK ++ A N+ ++M + ++ +V +N L G + ++E A L +EM
Sbjct: 510 IVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLE 569
Query: 60 DGVAADTRTYTIFIDGLCKNGYI 82
G+ + TY I + + G++
Sbjct: 570 KGLVPNRITYEIVKEEMVDQGFV 592
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 16/228 (7%)
Query: 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT 66
C + E A ++ EM+ +G PD ++ + L ++E AF LF+EM+R G+ AD
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518
Query: 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126
TYTI +D CK G I ++ + F +R + C ++ Y+ LI K+ ++ A ELF +
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578
Query: 127 LPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF-----------LDM-----EENAVAPN 170
+ + ++VTYS +I G GQ++KA +F +DM ++N+ PN
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638
Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
V+T+G L+ GF + + + +LL M + P+ + ++D L K
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 16/234 (6%)
Query: 2 LINGYCKNKEIEGALNLYSEML-SKGI---------------KPDVVIHNTLFIGLFEIH 45
LI+G+CK ++E A ++ M SK + +P+VV + L G + H
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653
Query: 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105
+VE A KL D M +G + Y IDGLCK G + E+ E+ + + YS
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713
Query: 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165
LID K R ++A ++ + +VV Y+ MI GL G+ D+A+ L MEE
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773
Query: 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
PNV+T+ +I GF I + +ELL +M K V P+ +++D KN
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 827
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 16/234 (6%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+++ +CK IE A ++EM G P+VV + L + +V A +LF+ M +
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ----------------AY 104
G + TY+ IDG CK G + ++ ++F + K D+ Y
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642
Query: 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164
L+DG CKS R+E A +L ++ + + Y +I GL G++D+A ++ +M E
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702
Query: 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + T+ +LI + ++ ++L KM E + P+ I + ++D L K
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 112/219 (51%), Gaps = 2/219 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G CK +++ A + +EM G + +++L F++ + + A K+ +M +
Sbjct: 680 LIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS 739
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
A + YT IDGLCK G E+ +L + + C+ ++ Y+ +IDG G++E L
Sbjct: 740 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCL 799
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL + + + VTY ++I +G +D AH+L +M++ + + +I GF
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
+ E + + LL ++ + + P S+ +++D L K +
Sbjct: 860 NK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 113/291 (38%), Gaps = 80/291 (27%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G C+ E A++ + M + P+VV ++TL G Q+ R ++ + M +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC------------------------ 97
+ + + C +G + +L + +++KC
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLK--KMVKCGHMPGYVVYNILIGSICGDKDSLN 425
Query: 98 ----ELDIQAYSCLIDG---------------LCKSGR---------------------- 116
+L +AYS ++ LC +G+
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485
Query: 117 -------------LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163
+E+A LF + RG LVADV TY+IM+ G +++A F +M
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545
Query: 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
E PNV+T+ LIH +++ + S EL M + +P+ S ++D
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 3/224 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L+ +C+N AL + +P +N L + +++ A + EM
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLA 264
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ D T F LCK G E++ L T + D Y+ LI GLC++ E A
Sbjct: 265 NLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVP---DTVFYTKLISGLCEASLFEEA 321
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++ + + + +VVTYS ++ G N Q+ + + M P+ F +L+H
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224
+ + S +LL KM + MP + +I++ + ++ SLN
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI+ CKN ++ A NL EM + + G F +E + L DE+ +D
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG-FNKEFIE-SLGLLDEIGQD 876
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQA-YSCLIDGLCKSGRLE 118
A Y + ID L K + ++ L + L D + Y+ LI+ LC + ++E
Sbjct: 877 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVE 936
Query: 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169
A +LF + + ++ ++ ++ +I GL+ + ++ +A L LD + V P
Sbjct: 937 TAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL-LLLDFISHMVCP 986
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEM--LSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58
+LI+ K + +E AL L E+ S + +N+L L ++VE AF+LF EM
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 946
Query: 59 RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL 99
+ GV + +++ I GL +N I E++ L + + C L
Sbjct: 947 KKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVCPL 987
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 109/213 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C I A+ L +M+ G KPD V TL GLF ++ A L D M + G
Sbjct: 154 LLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRG 213
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY ++GLCK G ++ L + K E ++ YS +ID LCK + AL
Sbjct: 214 CQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 273
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + + +V+TYS +I L N G+ A L DM E + PN++TF LI F
Sbjct: 274 NLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAF 333
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214
++ + K +L +M ++++ P+ S +++
Sbjct: 334 VKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 366
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILIN +C+ + AL L +M+ G +PD+V N+L G +++ A L D+M
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM 177
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G DT T+T I GL + E+V L + C+ D+ Y +++GLCK G ++A
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLA 237
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + + + A+VV YS +I L D A +LF +ME V PNVIT+ +LI
Sbjct: 238 LNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 297
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
S LL M E+ + P+ S ++D K
Sbjct: 298 LCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 117/218 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+ CK + + ALNL++EM +KG++P+V+ +++L L + A +L +M
Sbjct: 259 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERK 318
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + T++ ID K G +V++ +L+ + + +I YS LI+G C RL A
Sbjct: 319 INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAK 378
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++ + R + +VVTY+ +I+G ++DK +LF +M + + N +T+ TLIHGF
Sbjct: 379 QMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + + +M V P+ +I++D L KN
Sbjct: 439 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 476
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 111/217 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ C A L S+M+ + I P++V + L + ++ +A KL++EM +
Sbjct: 294 LISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRS 353
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TY+ I+G C + E+ ++ + C ++ Y+ LI+G CK+ R++ +
Sbjct: 354 IDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGM 413
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF + + LV + VTY+ +IHG + D A +F M V PN++T+ L+ G
Sbjct: 414 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 473
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + +K + + ++ + PD +I+++ + K
Sbjct: 474 CKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 110/212 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++NG CK + + ALNL ++M + I+ +VVI++T+ L + + A LF EM+ G
Sbjct: 224 VVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 283
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + TY+ I LC G ++ L + K ++ +S LID K G+L A
Sbjct: 284 VRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAE 343
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L+ + + + ++ TYS +I+G ++ +A + M PNV+T+ TLI+GF
Sbjct: 344 KLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGF 403
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ K +EL +M ++ ++ + + ++
Sbjct: 404 CKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+C + A + M+ K P+VV +NTL G + +V++ +LF EM + G
Sbjct: 364 LINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRG 423
Query: 62 VAADTRTYTIFIDGL-----CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116
+ +T TYT I G C N +V F+ + + +I Y+ L+DGLCK+G+
Sbjct: 424 LVGNTVTYTTLIHGFFQARDCDNAQMV-----FKQMVSVGVHPNILTYNILLDGLCKNGK 478
Query: 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
L A+ +F L R + D+ TY+IMI G+ G+
Sbjct: 479 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 108/225 (48%)
Query: 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT 70
E++ A+ L+ M P ++ + L + ++++ + ++M+ G++ + TY
Sbjct: 58 ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYN 117
Query: 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130
I I+ C+ + ++ L + L E DI + L++G C R+ A+ L +
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM 177
Query: 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190
D VT++ +IHGL+ + +A L M + P+++T+G +++G + +
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLA 237
Query: 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
+ LL+KM+ + + I S V+D L K ++L FT E +
Sbjct: 238 LNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 115/218 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G C E AL L++E L KGIKP+V+++NTL GL + A +L +EM G
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + +T+ I ++GLCK G + ++ L + + DI ++ LI G ++E AL
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+ + + DV TY+ +++GL + + + + M E APN+ TF L+
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
R + + + LL +MK K+V PDA ++D KN
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+NG CK + A L M+SKG PD+ N L G ++E A ++ D M +
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN 490
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV D TY ++GLCK + +E ++T+ C ++ ++ L++ LC+ +L+ A
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIH 179
L L + + D VT+ +I G +G +D A+ LF MEE V+ + T+ +IH
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIH 610
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
F + +L +M ++ + PD ++VD K
Sbjct: 611 AFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 2/214 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+ I G C+ E++GA+ + ++ +G KPDV+ +N L GL + + + A +M +
Sbjct: 256 LFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE 315
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ D+ TY I G CK G + + + D Y LIDGLC G A
Sbjct: 316 GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRA 375
Query: 121 LELFH-SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
L LF+ +L +G+ +V+ Y+ +I GL N G + +A L +M E + P V TF L++
Sbjct: 376 LALFNEALGKGI-KPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVN 434
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
G ++ S L+ M K PD +I++
Sbjct: 435 GLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 4/226 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG CK + E + Y M+ KG P++ N L L +++ A L +EM+
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS 561
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLCKSGRLEIA 120
V D T+ IDG CKNG + + LFR + K Y+ +I + + +A
Sbjct: 562 VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMA 621
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+LF + L D TY +M+ G G ++ + L+M EN P++ T G +I+
Sbjct: 622 EKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINC 681
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
+ + ++H+M +K ++P+A V+ + D + K E++ L
Sbjct: 682 LCVEDRVYEAAGIIHRMVQKGLVPEA--VNTICD-VDKKEVAAPKL 724
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 106/217 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G CKN + + A +M+++G++PD +NTL G + V+ A ++ + +G
Sbjct: 292 LIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNG 351
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY IDGLC G ++ LF + ++ Y+ LI GL G + A
Sbjct: 352 FVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + L+ +V T++I+++GL G + A L M P++ TF LIHG+
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ +E+L M + V PD + +++ L K
Sbjct: 472 STQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCK 508
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 48/254 (18%)
Query: 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65
Y +N + EG L+ +ML+ G+ + N L L + V+ KL D++ + GV +
Sbjct: 192 YEENFKAEG-YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPN 250
Query: 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKC---------------------------- 97
TY +FI GLC+ G EL +R++ C
Sbjct: 251 LFTYNLFIQGLCQRG------ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304
Query: 98 -------------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144
E D Y+ LI G CK G +++A + V D TY +I
Sbjct: 305 AEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLID 364
Query: 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
GL ++G+ ++A LF + + PNVI + TLI G + +L ++M EK ++P
Sbjct: 365 GLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP 424
Query: 205 DASIVSIVVDLLAK 218
+ +I+V+ L K
Sbjct: 425 EVQTFNILVNGLCK 438
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 88/183 (48%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I + +CK AL L + M S+G + +VV + T+ G +E + ++LF +M
Sbjct: 151 IRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLAS 210
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV+ T+ + LCK G + E +L + ++ Y+ I GLC+ G L+ A
Sbjct: 211 GVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ + L DV+TY+ +I+GL + + +A M + P+ T+ TLI G
Sbjct: 271 VRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAG 330
Query: 181 FIR 183
+ +
Sbjct: 331 YCK 333
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 2/200 (1%)
Query: 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74
A +Y M +GI PDV + + A +L + M G + Y +
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189
Query: 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS-LPRGVLV 133
G + + E ELF + L + ++ L+ LCK G ++ +L + RGVL
Sbjct: 190 GFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVL- 248
Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193
++ TY++ I GL G++D A + + E P+VIT+ LI+G + ++ +
Sbjct: 249 PNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY 308
Query: 194 LHKMKEKNVMPDASIVSIVV 213
L KM + + PD+ + ++
Sbjct: 309 LGKMVNEGLEPDSYTYNTLI 328
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 36/86 (41%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+ + + + A L+ EM+ + + PD + + G + V +K EM +
Sbjct: 607 IIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMEN 666
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESV 86
G T I+ LC + E+
Sbjct: 667 GFIPSLTTLGRVINCLCVEDRVYEAA 692
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 124/243 (51%), Gaps = 16/243 (6%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+++ +C EI+ AL+L +M G P+ VI+ TL L + ++V A +L +EM
Sbjct: 222 VVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM 281
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D T+ I GLCK I E+ ++ + I D Y L++GLCK GR++ A
Sbjct: 282 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA 341
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM-EENAVAPNVITFGTLIH 179
+LF+ +P+ ++V ++ +IHG G++D A + DM + P+V T+ +LI+
Sbjct: 342 KDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 397
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK-----------NEISLNSLPS 228
G+ + +E+LH M+ K P+ +I+VD K NE+S + L
Sbjct: 398 GYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKP 457
Query: 229 FTV 231
TV
Sbjct: 458 NTV 460
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 113/217 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ +CK I A+ ++ EM KG KPDV N+L GL E+ +++ A L +M +G
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V A+T TY I+ + G I E+ +L + LD Y+ LI GLC++G ++ A
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
LF + R ++ +I+I+GL G +++A + +M P+++TF +LI+G
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
R + + K++ + + PD + ++ L K
Sbjct: 645 CRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCK 681
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 110/218 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI GY K + AL + +M +KG KP+V + L G ++ +++ A+ + +EM DG
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ +T + I CK I E+VE+FR + C+ D+ ++ LI GLC+ ++ AL
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + +VA+ VTY+ +I+ G++ +A L +M + IT+ +LI G
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
R E K L KM P +I+++ L ++
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRS 612
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 105/197 (53%), Gaps = 1/197 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEML-SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
LI+G+ + ++ A + S+M+ S GI PDV +N+L G ++ V A ++ +M+
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + +YTI +DG CK G I E+ + + + + ++CLI CK R+ A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+E+F +PR DV T++ +I GL ++ A L DM V N +T+ TLI+
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Query: 181 FIRINEPSKVIELLHKM 197
F+R E + +L+++M
Sbjct: 539 FLRRGEIKEARKLVNEM 555
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 99/181 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LIN + + EI+ A L +EM+ +G D + +N+L GL +V++A LF++M RDG
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
A + I I+GLC++G + E+VE + + + DI ++ LI+GLC++GR+E L
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F L + D VT++ ++ L G + A L + E+ PN T+ L+
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Query: 182 I 182
I
Sbjct: 715 I 715
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 112/222 (50%), Gaps = 6/222 (2%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
L+NG CK ++ A +L+ + KP++VI NTL G +++ A + +M
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRI----PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ D TY I G K G + ++E+ +R C+ ++ +Y+ L+DG CK G+++ A
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ + + L + V ++ +I + ++ +A ++F +M P+V TF +LI G
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAKNEI 221
++E + LL M + V+ + + +++ L + EI
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEI 545
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILING C++ +E A+ EM+ +G PD+V N+L GL ++E +F ++Q +
Sbjct: 604 ILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE 663
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVEL 88
G+ DT T+ + LCK G++ ++ L
Sbjct: 664 GIPPDTVTFNTLMSWLCKGGFVYDACLL 691
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 39/203 (19%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G C + A N++ +MLS+ I P + + +++++ A L +M +
Sbjct: 191 ILVSGNCH----KVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH 246
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G ++ Y I L K + E+++L + ++ C D + ++ +I GLCK R+ A
Sbjct: 247 GCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 306
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++ + + +I G AP+ IT+G L++G
Sbjct: 307 AKMVNRM--------------LIRGF---------------------APDDITYGYLMNG 331
Query: 181 FIRINEPSKVIELLHKMKEKNVM 203
+I +L +++ + ++
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIV 354
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Query: 52 KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDG 110
+L +M+ +G+ + + K G+ ++ L +R + CE ++Y+ +++
Sbjct: 132 RLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEI 191
Query: 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
L ++A +F+ + + + T+ +++ ++D A L DM ++ PN
Sbjct: 192 LVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPN 251
Query: 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + TLIH + N ++ ++LL +M +PDA + V+ L K
Sbjct: 252 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 299
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
+ ++ C ++ AL L + + V + V Y +IH L ++++A L +M
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Query: 163 EENAVAPNVITFGTLIHG---FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
P+ TF +I G F RINE +K++ ++M + PD +++ L K
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMV---NRMLIRGFAPDDITYGYLMNGLCK 334
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 118/218 (54%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG CK ++ A+ + ML +G PDV +N++ GL ++ +V+ A ++ D+M
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD 360
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ +T TY I LCK + E+ EL R L D+ ++ LI GLC + +A+
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF + D TY+++I L + G++D+A ++ ME + A +VIT+ TLI GF
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ N+ + E+ +M+ V ++ + ++D L K+
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKS 518
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 2/207 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G C + A+ L+ EM SKG +PD +N L L +++ A + +M+ G
Sbjct: 406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
A TY IDG CK E+ E+F + + + Y+ LIDGLCKS R+E A
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + D TY+ ++ G + KA D+ M N P+++T+GTLI G
Sbjct: 526 QLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Query: 182 IRINEPSKVIELLH--KMKEKNVMPDA 206
+ +LL +MK N+ P A
Sbjct: 586 CKAGRVEVASKLLRSIQMKGINLTPHA 612
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 103/217 (47%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ CK ++E A L + SKGI PDV N+L GL A +LF+EM+ G
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY + ID LC G + E++ + + + + C + Y+ LIDG CK+ + A
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAE 490
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+F + + + VTY+ +I GL +++ A L M P+ T+ +L+ F
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHF 550
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
R + K +++ M PD ++ L K
Sbjct: 551 CRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 105/204 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+G CK E++ A+ + +M+++ P+ V +NTL L + +QVE A +L + G
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D T+ I GLC ++ELF +R CE D Y+ LID LC G+L+ AL
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ + V+TY+ +I G + +A ++F +ME + V+ N +T+ TLI G
Sbjct: 456 NMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGL 515
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
+ +L+ +M + PD
Sbjct: 516 CKSRRVEDAAQLMDQMIMEGQKPD 539
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 108/213 (50%), Gaps = 1/213 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI+ C +++ ALN+ +M G V+ +NTL G + ++ A ++FDEM+
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV+ ++ TY IDGLCK+ + ++ +L + + + D Y+ L+ C+ G ++ A
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKA 559
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
++ ++ D+VTY +I GL G+++ A L ++ + + +I G
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
Query: 181 FIRINEPSKVIELLHKMKEKN-VMPDASIVSIV 212
R + ++ I L +M E+N PDA IV
Sbjct: 620 LFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 1/216 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RD 60
++ GY + +++GAL + +M+ G V N + G + +VE A EM +D
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D T+ ++GLCK G++ ++E+ + + D+ Y+ +I GLCK G ++ A
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+E+ + + VTY+ +I L + Q+++A +L + + P+V TF +LI G
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216
+EL +M+ K PD ++++D L
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+CK + A ++ EM G+ + V +NTL GL + +VE A +L D+M +G
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY + C+ G I ++ ++ + + CE DI Y LI GLCK+GR+E+A
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595
Query: 122 ELFHSLP-RGVLVA-----------------------------------DVVTYSIMIHG 145
+L S+ +G+ + D V+Y I+ G
Sbjct: 596 KLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRG 655
Query: 146 LYN-DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204
L N G + +A D +++ E P + L G + ++ +++L++ + +K
Sbjct: 656 LCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFS 715
Query: 205 DASIVSIVVDLL 216
+ VS+V LL
Sbjct: 716 EEE-VSMVKGLL 726
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 102/206 (49%), Gaps = 1/206 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI C+ ++ A+ + +M S G+ PD T+ G E ++ A ++ ++M
Sbjct: 194 VLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF 253
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEI 119
G + + + + G CK G + +++ + + D ++ L++GLCK+G ++
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313
Query: 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
A+E+ + + DV TY+ +I GL G++ +A ++ M +PN +T+ TLI
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIS 373
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPD 205
+ N+ + EL + K ++PD
Sbjct: 374 TLCKENQVEEATELARVLTSKGILPD 399
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 97/201 (48%), Gaps = 1/201 (0%)
Query: 19 YSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78
+++M GIKPDV N L L HQ+ A + ++M G+ D +T+T + G +
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE 236
Query: 79 NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP-RGVLVADVV 137
G + ++ + + C + + ++ G CK GR+E AL + + D
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296
Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
T++ +++GL G + A ++ M + P+V T+ ++I G ++ E + +E+L +M
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 198 KEKNVMPDASIVSIVVDLLAK 218
++ P+ + ++ L K
Sbjct: 357 ITRDCSPNTVTYNTLISTLCK 377
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 116/213 (54%), Gaps = 1/213 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM-QRD 60
L+ G+ KN + A +Y EML KGIKPD + T +G + ++AF+L +EM D
Sbjct: 450 LVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATD 509
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
A D Y + IDGLCK G +V+++E R + + D Y+ +I G ++G+ ++A
Sbjct: 510 HHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMA 569
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L+ + R L V+TY ++I+G G++++A +M++ V PNV+T L++G
Sbjct: 570 RNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYG 629
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ + L KM+E+ + P+ ++++
Sbjct: 630 MCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLI 662
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI GYCK + A + EML+ GI P +N L + +++ A +L M
Sbjct: 314 LIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM---- 369
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
A D +Y + G K G VE+ LF LR I Y+ LIDGLC+SG LE A
Sbjct: 370 AAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQ 429
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + ++ DV+TY+ ++ G +G + A +++ +M + P+ + T G
Sbjct: 430 RLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE 489
Query: 182 IRINEPSKVIELLHKM-KEKNVMPDASIVSIVVDLLAK 218
+R+ + K L +M + PD +I ++ +D L K
Sbjct: 490 LRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCK 527
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 4/211 (1%)
Query: 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68
++ + A +Y M+ GI P V+ NT+ F+ +ER K++ EM+R + T
Sbjct: 216 SRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVT 275
Query: 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128
Y I I+G KNG + E+ +R + +++ LI+G CK G + A + +
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335
Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
+ TY+I I L + G++D A +L M AP+V+++ TL+HG+I++ +
Sbjct: 336 NAGIYPTTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKFV 391
Query: 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ L ++ ++ P + ++D L ++
Sbjct: 392 EASLLFDDLRAGDIHPSIVTYNTLIDGLCES 422
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 5/214 (2%)
Query: 2 LINGYCK-NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
L++GY K K +E +L L+ ++ + I P +V +NTL GL E +E A +L +EM
Sbjct: 380 LMHGYIKMGKFVEASL-LFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQ 438
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ D TYT + G KNG + + E++ + + D AY+ G + G + A
Sbjct: 439 LIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKA 498
Query: 121 LELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179
L + D+ Y++ I GL G + KA + + + P+ +T+ T+I
Sbjct: 499 FRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIR 558
Query: 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
G++ + L +M K + P S+++ V
Sbjct: 559 GYLENGQFKMARNLYDEMLRKRLYP--SVITYFV 590
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 35/206 (16%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+ I+G CK + A+ ++ G+ PD V + T+ G E Q + A L+DEM R
Sbjct: 520 VRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRK 579
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ TY + I G K G + ++ + ++ ++ ++ L+ G+CK+
Sbjct: 580 RLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKA------ 633
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
G +D+A+ MEE + PN ++ LI
Sbjct: 634 -----------------------------GNIDEAYRYLCKMEEEGIPPNKYSYTMLISK 664
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDA 206
+ +V++L +M +K + PD
Sbjct: 665 NCDFEKWEEVVKLYKEMLDKEIEPDG 690
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 48 ERAFKLFDEMQRDGVAADTR-TYTIFIDGLCKNGYIVESVELF-RTLRILKCELDIQAYS 105
E AF+ F+ +QR +R + ++ L +N + E+ + R++ + E+D
Sbjct: 100 EIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEAYLVAERSIDLGMHEID----D 155
Query: 106 CLIDG-----------------LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
LIDG K E L F + R + V +I++ L +
Sbjct: 156 LLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRD 215
Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
M+KA ++ M E+ + P VITF T++ + + +V ++ +MK +N+
Sbjct: 216 SRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVT 275
Query: 209 VSIVVDLLAKN 219
+I+++ +KN
Sbjct: 276 YNILINGFSKN 286
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 105/204 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI GYCK AL +++EML G+ P V+ + +L + + + RA + D+M+ G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + RTYT +DG + GY+ E+ + R + + Y+ LI+G C +G++E A+
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ + L DVV+YS ++ G +D+A + +M E + P+ IT+ +LI GF
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
+ +L +M + PD
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPD 519
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 103/204 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI G+C I+ AL L+ +M +KG P+VV +NTL G ++ +++ FKL M
Sbjct: 210 ILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ + +Y + I+GLC+ G + E + + LD Y+ LI G CK G A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + + R L V+TY+ +IH + G M++A + M + PN T+ TL+ G
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389
Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
F + ++ +L +M + P
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSP 413
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 110/206 (53%), Gaps = 2/206 (0%)
Query: 10 KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69
+ I A N++ EML + P+V +N L G ++ A LFD+M+ G + TY
Sbjct: 184 RNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTY 243
Query: 70 TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EIALELFHSLP 128
IDG CK I + +L R++ + E ++ +Y+ +I+GLC+ GR+ E++ L
Sbjct: 244 NTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303
Query: 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188
RG + D VTY+ +I G +G +A + +M + + P+VIT+ +LIH + +
Sbjct: 304 RGYSL-DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMN 362
Query: 189 KVIELLHKMKEKNVMPDASIVSIVVD 214
+ +E L +M+ + + P+ + +VD
Sbjct: 363 RAMEFLDQMRVRGLCPNERTYTTLVD 388
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 3/218 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LING+C ++E A+ + +M KG+ PDVV ++T+ G + V+ A ++ EM G
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ DT TY+ I G C+ E+ +L+ + + D Y+ LI+ C G LE AL
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + + ++ DVVTYS++I+GL + +A L L + P+ +T+ TLI
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC 600
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
I E V+ L+ K +M +A + +L KN
Sbjct: 601 SNI-EFKSVVSLIKGFCMKGMMTEAD--QVFESMLGKN 635
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 107/213 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++ING C+ ++ + +EM +G D V +NTL G + +A + EM R
Sbjct: 280 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ TYT I +CK G + ++E +R+ + + Y+ L+DG + G + A
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ + VVTY+ +I+G G+M+ A + DM+E ++P+V+++ T++ G
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
F R + + + + +M EK + PD S ++
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 103/203 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++G+ + + A + EM G P VV +N L G ++E A + ++M+ G
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
++ D +Y+ + G C++ + E++ + R + + D YS LI G C+ R + A
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L+ + R L D TY+ +I+ +G ++KA L +M E V P+V+T+ LI+G
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565
Query: 182 IRINEPSKVIELLHKMKEKNVMP 204
+ + + LL K+ + +P
Sbjct: 566 NKQSRTREAKRLLLKLFYEESVP 588
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 53/243 (21%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+++G+C++ +++ AL + EM+ KGIKPD + +++L G E + + A L++EM R G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA- 120
+ D TYT I+ C G + ++++L + D+ YS LI+GL K R A
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575
Query: 121 ---LELFH--------------------------SLPRGVLVADVVT------------- 138
L+LF+ SL +G + ++T
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKN 635
Query: 139 -------YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI---HGFIRINEPS 188
Y+IMIHG G + KA+ L+ +M ++ + +T L+ H ++NE +
Sbjct: 636 HKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELN 695
Query: 189 KVI 191
VI
Sbjct: 696 SVI 698
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI G+C + A ++ ML K KPD +N + G + +A+ L+ EM + G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Query: 62 VAADTRTYTIFIDGLCKNGYIVE-SVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEI 119
T T + L K G + E + + LR CEL + + L++ + G +++
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVIVHVLR--SCELSEAEQAKVLVEINHREGNMDV 728
Query: 120 ALELFHS------LPRGV 131
L++ LP G+
Sbjct: 729 VLDVLAEMAKDGFLPNGI 746
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 120/218 (55%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LIN +CK ++ L Y EM G+KP+VV ++TL + +++A K + +M+R G
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + TYT ID CK G + ++ L + + E ++ Y+ LIDGLC + R++ A
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 457
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF + ++ ++ +Y+ +IHG MD+A +L +++ + P+++ +GT I G
Sbjct: 458 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 517
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ + ++++MKE + ++ I + ++D K+
Sbjct: 518 CSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 35/240 (14%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+ CK ++E A L+ EM +G+ PD V +N++ G ++ +++ F+EM+
Sbjct: 267 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 326
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
D TY I+ CK G + +E +R ++ + ++ +YS L+D CK G ++ A
Sbjct: 327 CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQA 386
Query: 121 LELFHSLPRGVLVAD-----------------------------------VVTYSIMIHG 145
++ + + R LV + VVTY+ +I G
Sbjct: 387 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 446
Query: 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205
L + +M +A +LF M+ V PN+ ++ LIHGF++ + +ELL+++K + + PD
Sbjct: 447 LCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 109/219 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++ + K + + + +M+ G +P V +N + + + VE A LF+EM+ G
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 292
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ DT TY IDG K G + ++V F ++ + CE D+ Y+ LI+ CK G+L I L
Sbjct: 293 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 352
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E + + L +VV+YS ++ +G M +A ++DM + PN T+ +LI
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
+I S L ++M + V + + ++D L E
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAE 451
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 10/217 (4%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+ K K ++ AL L +E+ +GIKPD++++ T GL + ++E A + +EM+ G
Sbjct: 478 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ A++ YT +D K+G E + L ++ L E+ + + LIDGLCK+ + A+
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597
Query: 122 ELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ F+ + L A+ ++ MI GL D Q++ A LF M + + P+ + +L+ G
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
+ + + L KM E + + +DLLA
Sbjct: 658 NFKQGNVLEALALRDKMAE---------IGMKLDLLA 685
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 118/228 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++ +CK ++ A+ Y +M G+ P+ + +L +I + AF+L +EM + G
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + TYT IDGLC + E+ ELF + ++ +Y+ LI G K+ ++ AL
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL + L + D++ Y I GL + +++ A + +M+E + N + + TL+ +
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
+ P++ + LL +MKE ++ +++D L KN++ ++ F
Sbjct: 553 FKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 600
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%)
Query: 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88
P + + LF L ++ +E A + F +M+R V TR+ + K G +
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249
Query: 89 FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148
F+ + + Y+ +ID +CK G +E A LF + LV D VTY+ MI G
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309
Query: 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208
G++D F +M++ P+VIT+ LI+ F + + +E +MK + P+
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369
Query: 209 VSIVVDLLAK 218
S +VD K
Sbjct: 370 YSTLVDAFCK 379
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 94/203 (46%)
Query: 12 IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI 71
+E A+ +S+M + P N L ++ + + + F +M G TY I
Sbjct: 208 LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267
Query: 72 FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131
ID +CK G + + LF ++ D Y+ +IDG K GRL+ + F +
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191
DV+TY+ +I+ G++ + + +M+ N + PNV+++ TL+ F + + I
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 192 ELLHKMKEKNVMPDASIVSIVVD 214
+ M+ ++P+ + ++D
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLID 410
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 1/219 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ CK + A L +EML G++ +VV + L GL + +++ A +LF +M G
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
V + +Y I G K + ++EL L+ + D+ Y I GLC ++E A
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 527
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ + + + A+ + Y+ ++ + G + L +M+E + V+TF LI G
Sbjct: 528 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587
Query: 182 IRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKN 219
+ SK ++ +++ + +A+I + ++D L K+
Sbjct: 588 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59
+LI+G CKNK + A++ ++ + + G++ + I + GL + +QVE A LF++M +
Sbjct: 582 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 641
Query: 60 DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119
G+ D YT +DG K G ++E++ L + + +LD+ AY+ L+ GL +L+
Sbjct: 642 KGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQK 701
Query: 120 ALELFHSL-PRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158
A + G+ +V+ S++ Y G +D+A +L
Sbjct: 702 ARSFLEEMIGEGIHPDEVLCISVL-KKHYELGCIDEAVEL 740
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD- 60
L++ Y K+ L+L EM I+ VV L GL + V +A F+ + D
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ A+ +T IDGLCK+ + + LF + D AY+ L+DG K G + A
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170
L L + + D++ Y+ ++ GL + Q+ KA +M + P+
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 18/186 (9%)
Query: 50 AFKLFD-EMQRDGVAADTRTYTIFIDGL-CKNGYIVESVELFRTLRILKCELDI------ 101
AFK F M R+G +Y I L C Y ++ + + + + K + D+
Sbjct: 125 AFKFFKWSMTRNGFKHSVESYCIVAHILFCARMY-YDANSVLKEMVLSKADCDVFDVLWS 183
Query: 102 ---------QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152
+ L L G LE A++ F + R + + + ++H G+
Sbjct: 184 TRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKT 243
Query: 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212
D F DM P V T+ +I + + L +MK + ++PD + +
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303
Query: 213 VDLLAK 218
+D K
Sbjct: 304 IDGFGK 309
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 115/218 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ + K ++ A LY EM+ + P+ V +N++ GL ++ A K FD M G
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY I G CK + E ++LF+ + DI Y+ LI G C+ G+L +AL
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++F + + D++T+ I++HGL +G+++ A F DM E+ ++ + +IHG
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219
+ ++ K EL ++ + V PDA +I++ L KN
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKN 469
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 103/202 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+ING C + + A + M SKG P+VV +NTL G + V+ KLF M +G
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
AD TY I G C+ G + ++++F + + DI + L+ GLC +G +E AL
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
F + +V Y+IMIHGL +++KA +LF + V P+ T+ +I G
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466
Query: 182 IRINEPSKVIELLHKMKEKNVM 203
+ + EL+ +MKE+ ++
Sbjct: 467 CKNGPRREADELIRRMKEEGII 488
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G CKN E+ AL L +EM KG+ DVV +NTL GL + A ++ +M +
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D T+T ID K G + E+ EL++ + + + Y+ +I+GLC GRL A
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ F + +VVTY+ +I G +D+ LF M ++ T+ TLIHG+
Sbjct: 302 KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
++ + +++ M + V PD
Sbjct: 362 CQVGKLRVALDIFCWMVSRRVTPD 385
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 105/196 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++G+C I A +L M+ G +P+VV++NTL GL + ++ A +L +EM++ G
Sbjct: 147 LLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKG 206
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ AD TY + GLC +G ++ + R + D+ ++ LID K G L+ A
Sbjct: 207 LGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQ 266
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
EL+ + + + + VTY+ +I+GL G++ A F M PNV+T+ TLI GF
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326
Query: 182 IRINEPSKVIELLHKM 197
+ + ++L +M
Sbjct: 327 CKFRMVDEGMKLFQRM 342
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 6/221 (2%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+ +C+ + AL++ +M+ G +P +V +L G ++++ AF L M +
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + Y IDGLCKNG + ++EL + D+ Y+ L+ GLC SGR A
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ + + + DVVT++ +I G +D+A +L+ +M +++V PN +T+ ++I+G
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290
Query: 181 FI---RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
R+ + K +L M K P+ + ++ K
Sbjct: 291 LCMHGRLYDAKKTFDL---MASKGCFPNVVTYNTLISGFCK 328
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 1/242 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L G+ + E A L+ EM+ P +V L + + E +M+ G
Sbjct: 42 LRTGFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYG 101
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
++ D ++TI I C+ + ++ + + L E I + L+ G C R+ A
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
L + + +VV Y+ +I GL +G+++ A +L +ME+ + +V+T+ TL+ G
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241
S +L M ++++ PD + ++D+ K + +L+ Q VD +
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVK-QGNLDEAQELYKEMIQSSVDPN 280
Query: 242 NV 243
NV
Sbjct: 281 NV 282
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++G C N EIE AL + +M +V +N + GL + +VE+A++LF + +
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93
GV D RTYTI I GLCKNG E+ EL R ++
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMK 483
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+G CK ++E A L+ + +G+KPD + + +GL + A +L M+ +
Sbjct: 426 IMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEE 485
Query: 61 GV 62
G+
Sbjct: 486 GI 487
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 107/204 (52%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G+ +N EI+ Y +MLSKG++PD+V++NTL G + + A + D M R G
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D TYT IDG C+ G + ++E+ + + ELD +S L+ G+CK GR+ A
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAE 470
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ R + D VTY++M+ G L +M+ + P+V+T+ L++G
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGL 530
Query: 182 IRINEPSKVIELLHKMKEKNVMPD 205
++ + LL M V+PD
Sbjct: 531 CKLGQMKNADMLLDAMLNIGVVPD 554
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+CKN ++ A N+ M+ +G++PD + + TL G VE A ++ EM ++G
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D ++ + G+CK G ++++ R + + D Y+ ++D CK G +
Sbjct: 446 IELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGF 505
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHG 180
+L + V VVTY+++++GL GQM A D+ LD N V P+ IT+ TL+ G
Sbjct: 506 KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA-DMLLDAMLNIGVVPDDITYNTLLEG 564
Query: 181 FIRINEPSK 189
R SK
Sbjct: 565 HHRHANSSK 573
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 107/217 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LIN CK +++GA L+ EM +G+ P+ VI TL G +++ + + +M G
Sbjct: 316 LINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D Y ++G CKNG +V + + + D Y+ LIDG C+ G +E AL
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETAL 435
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+ + + + D V +S ++ G+ +G++ A +M + P+ +T+ ++ F
Sbjct: 436 EIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAF 495
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + +LL +M+ +P +++++ L K
Sbjct: 496 CKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCK 532
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 105/217 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LINGYCK ++ L +M +PDV ++ L L + ++++ A LFDEM + G
Sbjct: 281 LINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRG 340
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + +T I G +NG I E ++ + + DI Y+ L++G CK+G L A
Sbjct: 341 LIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAAR 400
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ + R L D +TY+ +I G G ++ A ++ +M++N + + + F L+ G
Sbjct: 401 NIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGM 460
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ L +M + PD ++++D K
Sbjct: 461 CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCK 497
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 2/199 (1%)
Query: 23 LSKGIKPDVVIHN--TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80
LS+ + DV I L + +++ + + E+ G + + I ++ CK G
Sbjct: 195 LSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEG 254
Query: 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140
I ++ ++F + + + +++ LI+G CK G L+ L H + + DV TYS
Sbjct: 255 NISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYS 314
Query: 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200
+I+ L + +MD AH LF +M + + PN + F TLIHG R E + E KM K
Sbjct: 315 ALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSK 374
Query: 201 NVMPDASIVSIVVDLLAKN 219
+ PD + + +V+ KN
Sbjct: 375 GLQPDIVLYNTLVNGFCKN 393
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+N +CK I A ++ E+ + ++P VV NTL G ++ ++ F+L +M++
Sbjct: 245 ILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKS 304
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
D TY+ I+ LCK + + LF + + ++ LI G ++G +++
Sbjct: 305 RTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLM 364
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
E + + L D+V Y+ +++G +G + A ++ M + P+ IT+ TLI G
Sbjct: 365 KESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDG 424
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
F R + +E+ +M + + D S +V
Sbjct: 425 FCRGGDVETALEIRKEMDQNGIELDRVGFSALV 457
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 95/197 (48%)
Query: 18 LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
Y E+L G +V + N L + + A K+FDE+ + + ++ I+G C
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYC 286
Query: 78 KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
K G + E L + + D+ YS LI+ LCK +++ A LF + + L+ + V
Sbjct: 287 KVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDV 346
Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
++ +IHG +G++D + + M + P+++ + TL++GF + + ++ M
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406
Query: 198 KEKNVMPDASIVSIVVD 214
+ + PD + ++D
Sbjct: 407 IRRGLRPDKITYTTLID 423
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 69/139 (49%)
Query: 80 GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139
G+I ++++ FR R + ++ I+ L+D + K + + +V +
Sbjct: 184 GFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVF 243
Query: 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199
+I+++ +G + A +F ++ + ++ P V++F TLI+G+ ++ + L H+M++
Sbjct: 244 NILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEK 303
Query: 200 KNVMPDASIVSIVVDLLAK 218
PD S +++ L K
Sbjct: 304 SRTRPDVFTYSALINALCK 322
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++++ +CK + + L EM S G P VV +N L GL ++ Q++ A L D M
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549
Query: 61 GVAADTRTYTIFIDG 75
GV D TY ++G
Sbjct: 550 GVVPDDITYNTLLEG 564
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 117/219 (53%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI + + E +Y +M+++ PD+ + NT +F+ + E+ +F+E++
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR 547
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D R+Y+I I GL K G+ E+ ELF +++ C LD +AY+ +IDG CK G++ A
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+L + VVTY +I GL ++D+A+ LF + + + NV+ + +LI GF
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
++ + +L ++ +K + P+ + ++D L K E
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAE 706
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 121/235 (51%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+I+G+CK ++ A L EM +KG +P VV + ++ GL +I +++ A+ LF+E +
Sbjct: 592 IVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ + Y+ IDG K G I E+ + L ++ ++ L+D L K+ + A
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEA 711
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L F S+ + VTY I+I+GL + +KA + +M++ + P+ I++ T+I G
Sbjct: 712 LVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISG 771
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235
+ ++ L + K +PD++ + +++ L+ ++++ F R+
Sbjct: 772 LAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Query: 2 LINGY--C--KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57
L+N Y C K E E ++ E+ ++ PD ++ L GL + ++LF M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578
Query: 58 QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117
+ G DTR Y I IDG CK G + ++ +L ++ E + Y +IDGL K RL
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638
Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
+ A LF + +VV YS +I G G++D+A+ + ++ + + PN+ T+ +L
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSL 698
Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ ++ E ++ + MKE P+ I+++ L K
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 110/218 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+++ CK+++++ A ++ EM K PD + +L GL ++ +V+ A+K++++M
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDS 476
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
++ YT I +G + ++++ + C D+Q + +D + K+G E
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKG 536
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+F + V D +YSI+IHGL G ++ ++LF M+E + + +I G
Sbjct: 537 RAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDG 596
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
F + + +K +LL +MK K P V+D LAK
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 1/211 (0%)
Query: 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67
K +++ AL ++ EM K P++ +N L L +++ AF+L D MQ+ G+ + R
Sbjct: 355 KMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413
Query: 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127
T I +D LCK+ + E+ +F + C D + LIDGL K GR++ A +++ +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Query: 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187
+ + Y+ +I +N G+ + H ++ DM +P++ T + + EP
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEP 533
Query: 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
K + ++K + +PDA SI++ L K
Sbjct: 534 EKGRAMFEEIKARRFVPDARSYSILIHGLIK 564
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+G K L+ M +G D +N + G + +V +A++L +EM+
Sbjct: 557 ILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK 616
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G TY IDGL K + E+ LF + + EL++ YS LIDG K GR++ A
Sbjct: 617 GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ L + L ++ T++ ++ L ++++A F M+E PN +T+G LI+G
Sbjct: 677 YLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILING 736
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
++ + +K +M+++ + P + ++ LAK
Sbjct: 737 LCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 108/219 (49%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I+G K ++ A L+ E SK I+ +VVI+++L G ++ +++ A+ + +E+ + G
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ + T+ +D L K I E++ F++++ LKC + Y LI+GLCK + A
Sbjct: 688 LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ + + + ++Y+ MI GL G + +A LF + N P+ + +I G
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
N L + + + + +++D L KN+
Sbjct: 808 SNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKND 846
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 106/217 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G K ++ A +Y +ML + + +++ +L F + E K++ +M
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN 512
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ D + ++D + K G + +F ++ + D ++YS LI GL K+G
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETY 572
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
ELF+S+ V D Y+I+I G G+++KA+ L +M+ P V+T+G++I G
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+I+ + L + K K + + I S ++D K
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 1/203 (0%)
Query: 16 LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75
L L+ +M G +P V + TL G + +V+ A L DEM+ + AD Y + ID
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247
Query: 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135
K G + + + F + + D Y+ +I LCK+ RL+ A+E+F L + V
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307
Query: 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLH 195
Y+ MI G + G+ D+A+ L P+VI + ++ ++ + + +++
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367
Query: 196 KMKEKNVMPDASIVSIVVDLLAK 218
+MK K+ P+ S +I++D+L +
Sbjct: 368 EMK-KDAAPNLSTYNILIDMLCR 389
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 47/271 (17%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+ I+ + K +++ A + E+ + G+KPD V + ++ L + ++++ A ++F+ ++++
Sbjct: 243 VCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN 302
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-------------ILKC---------- 97
T Y I G G E+ L R IL C
Sbjct: 303 RRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEA 362
Query: 98 -----------ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
++ Y+ LID LC++G+L+ A EL S+ + L +V T +IM+ L
Sbjct: 363 LKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
++D+A +F +M+ P+ ITF +LI G ++ ++ +K+ EK + D
Sbjct: 423 CKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR----VDDAYKVYEKMLDSDC 478
Query: 207 SIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
SIV L KN F H R+E+
Sbjct: 479 RTNSIVYTSLIKN---------FFNHGRKED 500
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 95/217 (43%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
++ G K ++ ++ M +P + TL ++ + LF +MQ G
Sbjct: 139 MVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG 198
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+T I G K G + ++ L ++ + DI Y+ ID K G++++A
Sbjct: 199 YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAW 258
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ FH + L D VTY+ MI L ++D+A ++F +E+N P + T+I G+
Sbjct: 259 KFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGY 318
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + LL + + K +P + ++ L K
Sbjct: 319 GSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 91/204 (44%), Gaps = 2/204 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L+ C+N + + EM G P V + +G + +++ + + M++
Sbjct: 105 LLVMARCRN--FDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKF 162
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
YT I + + LF+ ++ L E + ++ LI G K GR++ A
Sbjct: 163 KFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSA 222
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L L + L AD+V Y++ I G++D A F ++E N + P+ +T+ ++I
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGV 282
Query: 181 FIRINEPSKVIELLHKMKEKNVMP 204
+ N + +E+ +++ +P
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVP 306
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++ K +EI AL + M P+ V + L GL ++ + +AF + EMQ+ G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ T +YT I GL K G I E+ LF + D Y+ +I+GL R A
Sbjct: 758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155
LF R L T +++ L+ + +++A
Sbjct: 818 SLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQA 851
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILING CK ++ A + EM +G+KP + + T+ GL + + A LFD + +
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC--LIDGLCKSGRLE 118
G D+ Y I+GL +++ LF R + L I +C L+D L K+ LE
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR--RRGLPIHNKTCVVLLDTLHKNDCLE 849
Query: 119 IA 120
A
Sbjct: 850 QA 851
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 118/213 (55%), Gaps = 1/213 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I++ Y + ++++ A+ ++ M + P++V N L L + V +A ++F+ M RD
Sbjct: 173 IVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM-RD 231
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
D++TY+I ++G K + ++ E+FR + C DI YS ++D LCK+GR++ A
Sbjct: 232 RFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEA 291
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
L + S+ + YS+++H + ++++A D FL+ME + + +V F +LI
Sbjct: 292 LGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGA 351
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
F + N V +L +MK K V P++ +I++
Sbjct: 352 FCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 384
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 104/196 (53%), Gaps = 2/196 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+L++ Y +E A++ + EM G+K DV + N+L + ++++ +++ EM+
Sbjct: 312 VLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSK 371
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
GV ++++ I + L + G E+ ++FR + I CE D Y+ +I C+ +E A
Sbjct: 372 GVTPNSKSCNIILRHLIERGEKDEAFDVFRKM-IKVCEPDADTYTMVIKMFCEKKEMETA 430
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+++ + + + + T+S++I+GL + KA L +M E + P+ +TFG L
Sbjct: 431 DKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQL 490
Query: 181 FIRINEPSKVIELLHK 196
I+ E V++ L++
Sbjct: 491 LIK-EEREDVLKFLNE 505
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 2/219 (0%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L++ CK+K + A ++ M + PD ++ L G + + +A ++F EM G
Sbjct: 209 LLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG 267
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
D TY+I +D LCK G + E++ + R++ C+ YS L+ RLE A+
Sbjct: 268 CHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAV 327
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+ F + R + ADV ++ +I +M + + +M+ V PN + ++
Sbjct: 328 DTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHL 387
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
I E + ++ KM K PDA ++V+ + + +
Sbjct: 388 IERGEKDEAFDVFRKMI-KVCEPDADTYTMVIKMFCEKK 425
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 7/223 (3%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I+++ CK ++ AL + M KP I++ L +++E A F EM+R
Sbjct: 277 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 336
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE-LDIQAYSC--LIDGLCKSGRL 117
G+ AD + I CK + ++R L+ +K + + + SC ++ L + G
Sbjct: 337 GMKADVAVFNSLIGAFCKANRMKN---VYRVLKEMKSKGVTPNSKSCNIILRHLIERGEK 393
Query: 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177
+ A ++F + + V D TY+++I +M+ A ++ M + V P++ TF L
Sbjct: 394 DEAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVL 452
Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
I+G K LL +M E + P + LL K E
Sbjct: 453 INGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEE 495
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 80/171 (46%), Gaps = 2/171 (1%)
Query: 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
+I Q + + L + M++ + + T+ I + + + E++ F + ++
Sbjct: 146 KIRQYKLMWDLINAMRKKKML-NVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLV 204
Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
A++ L+ LCKS + A E+F ++ R D TYSI++ G + + KA ++F +M
Sbjct: 205 AFNGLLSALCKSKNVRKAQEVFENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREM 263
Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213
+ P+++T+ ++ + + + ++ M P I S++V
Sbjct: 264 IDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLV 314
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 105/199 (52%)
Query: 18 LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
+Y +ML G PDV+ +N + F + + +R ++L DEM +DG + D TY I + L
Sbjct: 244 VYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLA 303
Query: 78 KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
+ ++ L +R + E + ++ LIDGL ++G+LE + DVV
Sbjct: 304 TGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVV 363
Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
Y++MI G + G+++KA ++F +M E PNV T+ ++I GF + + LL +M
Sbjct: 364 CYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEM 423
Query: 198 KEKNVMPDASIVSIVVDLL 216
+ + P+ + S +V+ L
Sbjct: 424 ESRGCNPNFVVYSTLVNNL 442
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%)
Query: 14 GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73
ALNL + M G++P V+ TL GL ++E DE + G D YT+ I
Sbjct: 310 AALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMI 369
Query: 74 DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133
G G + ++ E+F+ + ++ Y+ +I G C +G+ + A L +
Sbjct: 370 TGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCN 429
Query: 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166
+ V YS +++ L N G++ +AH++ DM E
Sbjct: 430 PNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 79/167 (47%)
Query: 52 KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111
+L DEM +DG T+ + I + G + VE F + +Y+ ++ L
Sbjct: 173 RLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSL 232
Query: 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171
+ ++ ++ + DV+TY+I++ + G+ D+ + L +M ++ +P++
Sbjct: 233 LGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDL 292
Query: 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
T+ L+H N+P + LL+ M+E V P + ++D L++
Sbjct: 293 YTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSR 339
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G + ++E E + G PDVV + + G ++E+A ++F EM G
Sbjct: 333 LIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKG 392
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY I G C G E+ L + + C + YS L++ L +G++ A
Sbjct: 393 QLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAH 452
Query: 122 EL 123
E+
Sbjct: 453 EV 454
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++I GY E+E A ++ EM KG P+V +N++ G + + A L EM+
Sbjct: 367 VMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESR 426
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92
G + Y+ ++ L G ++E+ E+ + +
Sbjct: 427 GCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDM 458
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%)
Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
+Y+ ++H L Q ++ M E+ P+V+T+ ++ R+ + ++ LL +M
Sbjct: 224 SYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEM 283
Query: 198 KEKNVMPDASIVSIVVDLLAKNEISLNSL 226
+ PD +I++ LA L +L
Sbjct: 284 VKDGFSPDLYTYNILLHHLATGNKPLAAL 312
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I G+C + + A L EM S+G P+ V+++TL L +V A ++ +M G
Sbjct: 403 MIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 104/201 (51%)
Query: 18 LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77
+Y +ML G PDV+ +N L + + +++R +LFDEM RDG + D+ TY I + L
Sbjct: 241 VYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILG 300
Query: 78 KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137
K + ++ ++ + + + Y+ LIDGL ++G LE + + DVV
Sbjct: 301 KGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVV 360
Query: 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197
Y++MI G G++DKA ++F +M PNV T+ ++I G E + LL +M
Sbjct: 361 CYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEM 420
Query: 198 KEKNVMPDASIVSIVVDLLAK 218
+ + P+ + S +V L K
Sbjct: 421 ESRGCNPNFVVYSTLVSYLRK 441
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 84/176 (47%)
Query: 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102
E + + ++L DEM +DG RT+ + I + G ++V F +
Sbjct: 161 ECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKH 220
Query: 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
+Y+ +++ L + ++ ++ + DV+TY+I++ Y G+MD+ LF +M
Sbjct: 221 SYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEM 280
Query: 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ +P+ T+ L+H + N+P + L+ MKE + P + ++D L++
Sbjct: 281 ARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSR 336
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL++ K + AL + M GI P V+ + TL GL +E DEM +
Sbjct: 294 ILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKA 353
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G D YT+ I G +G + ++ E+FR + + ++ Y+ +I GLC +G A
Sbjct: 354 GCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREA 413
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162
L + + V YS ++ L G++ +A + +M
Sbjct: 414 CWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREM 455
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
+I G C E A L EM S+G P+ V+++TL L + ++ A K+ EM + G
Sbjct: 400 MIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 3/232 (1%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI+G K + E A++L+ +M KG KP++V+++ L GL + A ++ + M
Sbjct: 367 VLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS 426
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + TY+ + G K G E+V++++ + C + YS LIDGLC GR++ A
Sbjct: 427 GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEA 486
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM---EENAVAPNVITFGTL 177
+ ++ + + D V YS +I GL G MD A L+ +M EE P+V+T+ L
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNIL 546
Query: 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229
+ G + S+ ++LL+ M ++ PD + ++ L++ S + SF
Sbjct: 547 LDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSF 598
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 105/218 (48%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
++I CK + ++ A+ ++ M + PD + TL GL + +++ A L DEMQ +
Sbjct: 192 LVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSE 251
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G + Y + IDGLCK G + +L + + C + Y+ LI GLC G+L+ A
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 311
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ L + + + VTY +I+GL + A L MEE N + LI G
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218
+ + + + L KM EK P+ + S++VD L +
Sbjct: 372 LFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%)
Query: 27 IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
I P+ + N + L ++ V+RA ++F M D TY +DGLCK I E+V
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
L ++ C Y+ LIDGLCK G L +L ++ V + VTY+ +IHGL
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
G++DKA L M + PN +T+GTLI+G ++ + + LL M+E+ +
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ 362
Query: 207 SIVSIVVDLLAK 218
I S+++ L K
Sbjct: 363 HIYSVLISGLFK 374
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 105/216 (48%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+G C +++ A++L M+S P+ V + TL GL + + A +L M+ G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ Y++ I GL K G E++ L+R + C+ +I YS L+DGLC+ G+ A
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
E+ + + + + TYS ++ G + G ++A ++ +M++ + N + LI G
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
+ + + + KM + PD S ++ L
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 105/217 (48%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
+LI+G CK ++ L M KG P+ V +NTL GL ++++A L + M
Sbjct: 262 VLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSS 321
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ TY I+GL K ++V L ++ L+ YS LI GL K G+ E A
Sbjct: 322 KCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEA 381
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+ L+ + ++V YS+++ GL +G+ ++A ++ M + PN T+ +L+ G
Sbjct: 382 MSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKG 441
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217
F + + +++ +M + + S+++D L
Sbjct: 442 FFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLC 478
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 120 ALELFHSL------PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVI 172
A++LFH + R V + V I+ GLY+ G + +D ++ N ++PN +
Sbjct: 131 AVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGL--EFYDYVVNSNMNMNISPNGL 188
Query: 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
+F +I ++ + IE+ M E+ +PD ++D L K E
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEE 236
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 115/220 (52%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
IL+N +C+ + AL+ +M+ GI+PD+V ++L G + ++ A + +M++
Sbjct: 128 ILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKM 187
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
G+ D TI ID LCKN +V ++E+ + ++ ++ YS LI GLCKSGRL A
Sbjct: 188 GIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADA 247
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
H + + +V+T+S +I G++ K ++ M + ++ PNV T+ +LI+G
Sbjct: 248 ERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYG 307
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220
N + I++L M K P+ S + + K+
Sbjct: 308 LCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSS 347
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
L+NG+C + I+ A+ + +M GIK DVV+ L L + V A ++ M+ G
Sbjct: 164 LVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRG 223
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
++ + TY+ I GLCK+G + ++ + K ++ +S LID K G+L
Sbjct: 224 ISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVD 283
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
++ + + + +V TYS +I+GL ++D+A + M PNV+T+ TL +GF
Sbjct: 284 SVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGF 343
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226
+ + I+LL M ++ V A N +S N+L
Sbjct: 344 FKSSRVDDGIKLLDDMPQRGV--------------AANTVSCNTL 374
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 111/222 (50%), Gaps = 1/222 (0%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
ILI+ CKN+ + AL + M +GI P+VV +++L GL + ++ A + EM
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120
+ + T++ ID K G + + +++ + + + ++ YS LI GLC R++ A
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317
Query: 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180
+++ + +VVTYS + +G + ++D L DM + VA N ++ TLI G
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 377
Query: 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVV-DLLAKNEI 221
+ + + + + M ++P+ +IV+ L A E+
Sbjct: 378 YFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEV 419
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 126/247 (51%), Gaps = 7/247 (2%)
Query: 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG 61
LI+ Y K ++ ++Y M+ I P+V +++L GL ++V+ A K+ D M G
Sbjct: 269 LIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 328
Query: 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121
+ TY+ +G K+ + + ++L + + + + LI G ++G++++AL
Sbjct: 329 CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLAL 388
Query: 122 ELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181
+F + L+ ++ +Y+I++ GL+ +G+++KA F M++ ++IT+ +IHG
Sbjct: 389 GVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGM 448
Query: 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI-----SLNSLPSFTVHERQE 236
+ + +L +K+K K V PD +I++ L + + +LN + H RQ
Sbjct: 449 CKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADALNRF--YQKHVRQN 506
Query: 237 EVDESNV 243
E + V
Sbjct: 507 ESAPAEV 513
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 1/196 (0%)
Query: 27 IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86
I PD+ N L Q A +M + G+ D T + ++G C + I ++V
Sbjct: 119 ISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAV 178
Query: 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146
+ + + + D+ + LID LCK+ + ALE+ + + +VVTYS +I GL
Sbjct: 179 YVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGL 238
Query: 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206
G++ A +M+ + PNVITF LI + + + SKV + M + ++ P+
Sbjct: 239 CKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNV 298
Query: 207 -SIVSIVVDLLAKNEI 221
+ S++ L N +
Sbjct: 299 FTYSSLIYGLCMHNRV 314
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60
I++ G N E+E AL+ + M D++ + + G+ + V+ A+ LF +++
Sbjct: 408 IVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFK 467
Query: 61 GVAADTRTYTIFIDGLCKNGYIVESVELFR 90
V D + YTI I L + G E+ L R
Sbjct: 468 RVEPDFKAYTIMIAELNRAGMRTEADALNR 497
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194
D+ T +I+++ Q A M + + P+++T +L++GF N + +
Sbjct: 122 DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVA 181
Query: 195 HKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237
+M++ + D + +I++D L KN + +P+ V +R ++
Sbjct: 182 GQMEKMGIKRDVVVDTILIDTLCKNRL---VVPALEVLKRMKD 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,243,661
Number of Sequences: 539616
Number of extensions: 3491661
Number of successful extensions: 15229
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 9216
Number of HSP's gapped (non-prelim): 3039
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)