Query 046446
Match_columns 244
No_of_seqs 447 out of 1250
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 12:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2E-45 4.2E-50 309.0 28.3 231 2-232 478-710 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2E-45 4.4E-50 309.0 28.1 234 2-235 513-748 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.7E-42 1.2E-46 284.1 22.9 225 1-233 264-489 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-41 2.4E-46 282.4 21.5 233 1-241 194-461 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.5E-40 7.7E-45 279.1 21.5 230 1-238 227-456 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 7E-39 1.5E-43 271.2 24.1 227 2-233 360-652 (857)
7 PRK11788 tetratricopeptide rep 99.9 3.4E-20 7.5E-25 145.1 25.6 229 3-237 114-349 (389)
8 PRK11788 tetratricopeptide rep 99.9 2.6E-19 5.7E-24 140.1 24.7 229 3-235 76-311 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 1.5E-17 3.3E-22 142.7 26.4 220 6-233 679-898 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 4.2E-17 9.2E-22 140.0 26.8 226 3-235 574-799 (899)
11 TIGR00990 3a0801s09 mitochondr 99.7 1.2E-14 2.6E-19 120.1 26.5 226 4-235 339-571 (615)
12 PRK15174 Vi polysaccharide exp 99.7 1.1E-14 2.4E-19 120.3 26.2 190 41-235 187-381 (656)
13 PRK15174 Vi polysaccharide exp 99.7 2.2E-14 4.7E-19 118.6 26.5 225 5-235 119-347 (656)
14 PF13429 TPR_15: Tetratricopep 99.7 7.4E-16 1.6E-20 115.2 12.5 219 8-233 56-275 (280)
15 PF13429 TPR_15: Tetratricopep 99.7 3.5E-16 7.7E-21 116.9 8.7 230 3-239 15-247 (280)
16 TIGR00990 3a0801s09 mitochondr 99.7 3E-13 6.5E-18 111.8 25.7 223 9-235 307-537 (615)
17 TIGR02521 type_IV_pilW type IV 99.7 4E-13 8.7E-18 97.5 23.4 204 28-235 28-232 (234)
18 TIGR02521 type_IV_pilW type IV 99.6 5.5E-13 1.2E-17 96.8 23.8 194 3-200 38-232 (234)
19 PRK09782 bacteriophage N4 rece 99.6 7.6E-13 1.6E-17 112.7 26.2 218 9-235 489-706 (987)
20 PRK11447 cellulose synthase su 99.6 1E-12 2.2E-17 115.5 25.9 229 4-236 469-741 (1157)
21 PRK10747 putative protoheme IX 99.6 1.5E-12 3.3E-17 101.9 24.3 218 6-233 128-388 (398)
22 PRK12370 invasion protein regu 99.6 2E-12 4.3E-17 105.4 25.2 217 10-236 275-503 (553)
23 KOG4422 Uncharacterized conser 99.6 8.9E-13 1.9E-17 99.0 20.0 231 1-235 212-462 (625)
24 KOG1126 DNA-binding cell divis 99.6 2.1E-13 4.6E-18 107.0 17.4 226 3-235 360-620 (638)
25 KOG4626 O-linked N-acetylgluco 99.6 1.9E-13 4.2E-18 106.9 17.0 219 7-234 263-484 (966)
26 PRK09782 bacteriophage N4 rece 99.6 4.6E-12 1E-16 108.1 25.8 217 5-230 518-735 (987)
27 PF13041 PPR_2: PPR repeat fam 99.6 9.2E-15 2E-19 79.1 6.4 49 134-182 1-49 (50)
28 TIGR00540 hemY_coli hemY prote 99.6 2.4E-12 5.2E-17 101.2 22.3 131 100-234 262-398 (409)
29 PF13041 PPR_2: PPR repeat fam 99.6 1E-14 2.2E-19 79.0 6.1 49 29-77 1-49 (50)
30 COG2956 Predicted N-acetylgluc 99.6 4.4E-12 9.5E-17 92.0 20.7 226 6-234 45-277 (389)
31 PRK11447 cellulose synthase su 99.6 8.7E-12 1.9E-16 109.8 26.6 224 5-233 278-556 (1157)
32 KOG4422 Uncharacterized conser 99.5 2.3E-12 5E-17 96.8 18.8 226 6-235 125-385 (625)
33 KOG1155 Anaphase-promoting com 99.5 4.8E-12 1E-16 95.8 20.2 228 4-235 235-495 (559)
34 KOG4626 O-linked N-acetylgluco 99.5 1.6E-12 3.4E-17 102.0 17.0 220 4-233 226-449 (966)
35 KOG1129 TPR repeat-containing 99.5 2.1E-12 4.5E-17 93.9 15.7 227 2-234 229-457 (478)
36 KOG1126 DNA-binding cell divis 99.5 2E-12 4.4E-17 101.6 16.8 219 11-234 334-585 (638)
37 COG3071 HemY Uncharacterized e 99.5 7.5E-11 1.6E-15 87.8 23.8 221 9-233 97-388 (400)
38 PRK12370 invasion protein regu 99.5 2.3E-11 5E-16 99.2 22.1 219 8-236 316-536 (553)
39 PRK10747 putative protoheme IX 99.5 6.8E-11 1.5E-15 92.7 23.8 219 8-236 96-358 (398)
40 PRK10049 pgaA outer membrane p 99.5 1E-10 2.2E-15 99.0 26.4 228 3-235 56-339 (765)
41 KOG1840 Kinesin light chain [C 99.5 4.1E-11 8.9E-16 94.5 20.6 235 2-236 205-480 (508)
42 KOG2003 TPR repeat-containing 99.5 4.8E-11 1.1E-15 90.7 19.8 209 7-222 501-710 (840)
43 PRK10049 pgaA outer membrane p 99.4 2.8E-10 6.1E-15 96.3 26.2 228 3-236 22-302 (765)
44 KOG1155 Anaphase-promoting com 99.4 2.1E-10 4.5E-15 87.2 21.0 193 2-198 336-534 (559)
45 COG2956 Predicted N-acetylgluc 99.4 6.9E-10 1.5E-14 80.8 22.5 196 2-199 75-277 (389)
46 PRK11189 lipoprotein NlpI; Pro 99.4 6.9E-10 1.5E-14 83.6 21.7 218 9-235 39-265 (296)
47 KOG4318 Bicoid mRNA stability 99.4 1.5E-11 3.2E-16 99.8 12.9 197 17-221 11-286 (1088)
48 TIGR00540 hemY_coli hemY prote 99.4 9E-10 2E-14 86.8 22.5 217 6-231 128-360 (409)
49 COG3063 PilF Tfp pilus assembl 99.4 2.7E-09 5.7E-14 74.3 21.6 197 34-234 38-235 (250)
50 PRK14574 hmsH outer membrane p 99.3 1.7E-09 3.7E-14 91.0 24.3 228 4-235 110-396 (822)
51 COG3063 PilF Tfp pilus assembl 99.3 2.5E-09 5.3E-14 74.4 20.8 201 3-209 42-243 (250)
52 PRK11189 lipoprotein NlpI; Pro 99.3 3.5E-09 7.6E-14 79.8 22.4 196 5-210 73-274 (296)
53 KOG1129 TPR repeat-containing 99.3 4.1E-10 8.8E-15 82.3 13.8 194 2-200 262-458 (478)
54 PRK14574 hmsH outer membrane p 99.3 1E-08 2.3E-13 86.4 24.0 205 3-211 299-522 (822)
55 KOG0547 Translocase of outer m 99.2 3.3E-09 7.1E-14 81.4 18.1 222 6-233 336-564 (606)
56 PF12569 NARP1: NMDA receptor- 99.2 2.6E-08 5.7E-13 79.7 24.1 224 4-237 12-293 (517)
57 KOG2003 TPR repeat-containing 99.2 8.5E-09 1.8E-13 78.8 20.0 227 5-237 428-691 (840)
58 COG3071 HemY Uncharacterized e 99.2 1.9E-08 4.1E-13 75.4 19.7 196 2-205 193-395 (400)
59 KOG2076 RNA polymerase III tra 99.2 6.1E-08 1.3E-12 79.5 24.0 226 6-234 149-477 (895)
60 PF12569 NARP1: NMDA receptor- 99.2 6.7E-08 1.5E-12 77.4 23.9 229 3-236 45-335 (517)
61 PF04733 Coatomer_E: Coatomer 99.2 2.5E-09 5.4E-14 79.7 14.4 197 28-235 63-265 (290)
62 KOG4318 Bicoid mRNA stability 99.1 9.2E-10 2E-14 89.8 11.8 182 52-237 11-267 (1088)
63 PLN02789 farnesyltranstransfer 99.1 3.1E-07 6.6E-12 69.6 23.4 222 5-233 46-300 (320)
64 KOG1173 Anaphase-promoting com 99.1 6E-08 1.3E-12 75.8 19.5 224 5-233 253-516 (611)
65 cd05804 StaR_like StaR_like; a 99.1 2.3E-07 5E-12 72.0 22.8 225 5-234 52-292 (355)
66 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.8E-12 75.1 20.5 204 31-234 199-437 (508)
67 PF12854 PPR_1: PPR repeat 99.1 4E-10 8.6E-15 55.1 4.2 27 99-125 5-31 (34)
68 KOG2002 TPR-containing nuclear 99.0 2.3E-08 5E-13 82.6 16.3 225 5-234 505-744 (1018)
69 PF12854 PPR_1: PPR repeat 99.0 4E-10 8.6E-15 55.1 3.9 32 61-92 2-33 (34)
70 TIGR03302 OM_YfiO outer membra 99.0 1.2E-07 2.7E-12 69.2 18.7 185 30-235 32-232 (235)
71 TIGR03302 OM_YfiO outer membra 99.0 1.4E-07 3.1E-12 68.8 18.2 177 3-200 40-232 (235)
72 KOG2076 RNA polymerase III tra 99.0 2.9E-07 6.2E-12 75.7 21.1 98 135-233 413-510 (895)
73 KOG1128 Uncharacterized conser 99.0 3.5E-08 7.6E-13 79.3 15.5 205 2-218 430-635 (777)
74 PRK10370 formate-dependent nit 99.0 4.5E-07 9.9E-12 64.1 19.7 162 38-216 23-187 (198)
75 KOG2002 TPR-containing nuclear 99.0 5.6E-07 1.2E-11 74.7 22.5 228 2-234 276-524 (1018)
76 KOG1174 Anaphase-promoting com 99.0 3.8E-07 8.3E-12 69.1 19.9 227 3-236 239-501 (564)
77 PF04733 Coatomer_E: Coatomer 99.0 1.6E-08 3.5E-13 75.4 12.4 219 4-237 9-232 (290)
78 KOG0495 HAT repeat protein [RN 99.0 6.5E-07 1.4E-11 71.6 21.5 220 8-233 630-878 (913)
79 KOG0547 Translocase of outer m 99.0 1.8E-07 3.8E-12 72.2 17.5 191 4-199 368-565 (606)
80 KOG1173 Anaphase-promoting com 99.0 6E-07 1.3E-11 70.4 20.6 205 8-219 324-535 (611)
81 PRK10370 formate-dependent nit 98.9 5.4E-07 1.2E-11 63.7 18.3 155 4-174 24-181 (198)
82 KOG1125 TPR repeat-containing 98.9 8.4E-07 1.8E-11 69.8 19.9 218 5-227 294-563 (579)
83 PRK15359 type III secretion sy 98.9 2.9E-07 6.4E-12 61.6 15.1 93 36-130 29-121 (144)
84 cd05804 StaR_like StaR_like; a 98.9 2.8E-06 6.1E-11 66.0 22.8 192 5-200 15-215 (355)
85 KOG3060 Uncharacterized conser 98.9 4.4E-06 9.5E-11 59.4 20.9 188 9-201 25-221 (289)
86 COG5010 TadD Flp pilus assembl 98.9 1.2E-06 2.6E-11 62.5 18.2 156 70-229 70-225 (257)
87 PRK15359 type III secretion sy 98.9 4.4E-07 9.6E-12 60.8 15.5 95 69-165 27-121 (144)
88 COG5010 TadD Flp pilus assembl 98.9 3.6E-07 7.8E-12 65.1 15.5 164 30-198 66-229 (257)
89 KOG0495 HAT repeat protein [RN 98.9 4.8E-06 1E-10 66.9 22.3 188 6-199 594-781 (913)
90 PRK14720 transcript cleavage f 98.8 2.2E-06 4.9E-11 72.4 21.3 206 2-217 37-268 (906)
91 KOG1128 Uncharacterized conser 98.8 3.5E-07 7.5E-12 73.8 15.1 213 4-237 406-618 (777)
92 KOG1070 rRNA processing protei 98.8 2.9E-06 6.3E-11 73.2 21.1 200 29-233 1456-1661(1710)
93 KOG3081 Vesicle coat complex C 98.8 1.1E-05 2.4E-10 57.9 20.4 146 69-225 111-260 (299)
94 PRK15179 Vi polysaccharide bio 98.8 2.1E-06 4.6E-11 71.5 19.6 134 28-165 83-217 (694)
95 KOG1070 rRNA processing protei 98.8 3.2E-06 7E-11 73.0 20.6 214 3-222 1465-1687(1710)
96 PRK15179 Vi polysaccharide bio 98.8 5.3E-06 1.2E-10 69.2 21.6 145 62-210 82-226 (694)
97 TIGR02552 LcrH_SycD type III s 98.8 8.4E-07 1.8E-11 58.8 13.9 92 71-164 22-113 (135)
98 TIGR02552 LcrH_SycD type III s 98.7 1.1E-06 2.4E-11 58.2 13.5 116 18-139 5-121 (135)
99 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 8.7E-07 1.9E-11 68.6 14.3 121 36-162 174-294 (395)
100 KOG1915 Cell cycle control pro 98.7 3.7E-05 8.1E-10 59.7 22.3 224 9-239 154-504 (677)
101 PLN02789 farnesyltranstransfer 98.7 2.1E-05 4.6E-10 59.7 21.0 194 34-232 40-247 (320)
102 PF10037 MRP-S27: Mitochondria 98.7 8.5E-07 1.8E-11 69.0 13.0 124 61-184 61-186 (429)
103 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.1E-06 4.4E-11 66.6 14.9 127 65-198 168-295 (395)
104 TIGR00756 PPR pentatricopeptid 98.6 8.7E-08 1.9E-12 47.3 4.1 33 33-65 2-34 (35)
105 KOG3081 Vesicle coat complex C 98.6 1.2E-05 2.6E-10 57.7 16.0 172 18-200 95-271 (299)
106 TIGR00756 PPR pentatricopeptid 98.6 9.2E-08 2E-12 47.2 4.1 33 138-170 2-34 (35)
107 PF08579 RPM2: Mitochondrial r 98.6 9.7E-07 2.1E-11 54.7 9.2 80 34-113 28-116 (120)
108 PF09976 TPR_21: Tetratricopep 98.6 1.3E-05 2.9E-10 53.8 15.8 115 44-161 24-143 (145)
109 KOG3060 Uncharacterized conser 98.6 7.1E-05 1.5E-09 53.5 19.8 185 44-232 25-217 (289)
110 PF10037 MRP-S27: Mitochondria 98.6 2.1E-06 4.5E-11 66.9 12.8 124 26-149 61-186 (429)
111 COG4783 Putative Zn-dependent 98.6 2.3E-05 4.9E-10 60.9 17.7 119 75-197 315-434 (484)
112 PF13812 PPR_3: Pentatricopept 98.6 1.4E-07 3.1E-12 46.2 4.1 32 173-204 3-34 (34)
113 PF09976 TPR_21: Tetratricopep 98.6 1.7E-05 3.7E-10 53.2 15.2 126 68-197 14-144 (145)
114 PF13812 PPR_3: Pentatricopept 98.5 1.7E-07 3.6E-12 45.9 4.1 33 137-169 2-34 (34)
115 KOG0624 dsRNA-activated protei 98.5 0.00011 2.3E-09 55.1 19.9 222 5-234 115-369 (504)
116 KOG1125 TPR repeat-containing 98.5 1.2E-05 2.7E-10 63.5 15.9 187 41-232 295-524 (579)
117 PF08579 RPM2: Mitochondrial r 98.5 2.4E-06 5.3E-11 53.0 9.7 80 140-219 29-117 (120)
118 COG4783 Putative Zn-dependent 98.5 6E-05 1.3E-09 58.6 19.0 137 43-200 318-454 (484)
119 KOG1915 Cell cycle control pro 98.5 0.00011 2.3E-09 57.3 20.0 208 8-222 85-296 (677)
120 KOG4340 Uncharacterized conser 98.5 1.8E-05 4E-10 57.9 15.1 226 2-237 16-272 (459)
121 PRK14720 transcript cleavage f 98.5 2.6E-05 5.6E-10 66.3 18.0 202 26-235 25-252 (906)
122 KOG1174 Anaphase-promoting com 98.5 0.00028 6.1E-09 54.1 21.2 208 6-222 276-520 (564)
123 KOG4162 Predicted calmodulin-b 98.5 0.00014 3.1E-09 59.6 20.5 129 104-235 653-783 (799)
124 PRK04841 transcriptional regul 98.4 0.00021 4.6E-09 62.6 22.5 230 5-234 461-719 (903)
125 PRK04841 transcriptional regul 98.4 0.0001 2.3E-09 64.5 20.5 231 4-234 499-759 (903)
126 KOG1914 mRNA cleavage and poly 98.4 0.00036 7.7E-09 55.3 20.5 218 13-232 310-536 (656)
127 KOG1156 N-terminal acetyltrans 98.4 0.00024 5.2E-09 57.3 19.7 204 7-217 52-264 (700)
128 KOG2053 Mitochondrial inherita 98.4 0.00061 1.3E-08 57.0 22.5 106 7-118 20-127 (932)
129 KOG2047 mRNA splicing factor [ 98.4 0.00052 1.1E-08 55.6 21.1 197 1-202 253-508 (835)
130 cd00189 TPR Tetratricopeptide 98.4 1.2E-05 2.6E-10 49.1 10.2 17 41-57 10-26 (100)
131 KOG3785 Uncharacterized conser 98.4 8.6E-06 1.9E-10 60.9 10.4 195 37-237 291-492 (557)
132 PF12895 Apc3: Anaphase-promot 98.3 2.4E-06 5.1E-11 51.6 6.4 18 73-90 32-49 (84)
133 cd00189 TPR Tetratricopeptide 98.3 1.6E-05 3.5E-10 48.5 10.3 92 70-163 4-95 (100)
134 KOG1156 N-terminal acetyltrans 98.3 0.0002 4.4E-09 57.7 18.0 225 6-235 17-248 (700)
135 TIGR02795 tol_pal_ybgF tol-pal 98.3 4.3E-05 9.4E-10 49.2 12.3 98 33-130 4-105 (119)
136 KOG4340 Uncharacterized conser 98.3 3E-05 6.5E-10 56.8 12.2 55 76-131 154-208 (459)
137 KOG2376 Signal recognition par 98.3 0.0004 8.6E-09 55.5 19.0 122 3-131 19-140 (652)
138 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.5E-05 1.2E-09 48.7 12.6 98 68-165 4-105 (119)
139 PF01535 PPR: PPR repeat; Int 98.3 1.2E-06 2.6E-11 41.7 3.6 29 33-61 2-30 (31)
140 PF05843 Suf: Suppressor of fo 98.3 0.00017 3.6E-09 54.1 16.4 131 32-165 2-136 (280)
141 PF01535 PPR: PPR repeat; Int 98.3 1.5E-06 3.3E-11 41.4 3.4 29 138-166 2-30 (31)
142 PRK10866 outer membrane biogen 98.3 0.0007 1.5E-08 49.6 19.8 190 36-233 37-239 (243)
143 PF06239 ECSIT: Evolutionarily 98.3 5.3E-05 1.1E-09 53.1 11.9 35 117-151 119-153 (228)
144 PLN03088 SGT1, suppressor of 98.3 6.4E-05 1.4E-09 58.3 13.8 88 41-130 12-99 (356)
145 KOG3785 Uncharacterized conser 98.2 0.00014 3.1E-09 54.6 14.8 194 2-202 291-492 (557)
146 CHL00033 ycf3 photosystem I as 98.2 3.9E-05 8.5E-10 52.9 11.5 64 32-95 36-101 (168)
147 PF05843 Suf: Suppressor of fo 98.2 5.5E-05 1.2E-09 56.6 12.8 146 67-217 2-151 (280)
148 KOG2053 Mitochondrial inherita 98.2 0.0014 3E-08 55.1 21.3 203 5-215 52-266 (932)
149 PF12895 Apc3: Anaphase-promot 98.2 8.8E-06 1.9E-10 49.1 7.0 81 79-161 2-83 (84)
150 PRK02603 photosystem I assembl 98.2 0.00017 3.8E-09 49.9 14.3 88 32-120 36-125 (172)
151 KOG2047 mRNA splicing factor [ 98.2 0.0019 4.2E-08 52.4 21.9 194 3-198 394-613 (835)
152 CHL00033 ycf3 photosystem I as 98.2 6.6E-05 1.4E-09 51.8 11.8 81 66-147 35-117 (168)
153 PF14938 SNAP: Soluble NSF att 98.2 0.00042 9.1E-09 52.1 16.9 201 33-235 37-266 (282)
154 PLN03088 SGT1, suppressor of 98.2 9E-05 1.9E-09 57.5 13.6 91 4-96 10-100 (356)
155 KOG3616 Selective LIM binding 98.2 0.00017 3.7E-09 59.3 15.0 165 7-196 743-907 (1636)
156 PF06239 ECSIT: Evolutionarily 98.2 8.7E-05 1.9E-09 52.0 11.3 51 98-148 44-99 (228)
157 PRK10866 outer membrane biogen 98.2 0.00079 1.7E-08 49.3 17.0 173 5-198 41-239 (243)
158 PRK02603 photosystem I assembl 98.1 0.00032 6.9E-09 48.6 13.9 91 66-157 35-127 (172)
159 PRK15363 pathogenicity island 98.1 0.00014 2.9E-09 48.7 11.2 98 31-130 35-132 (157)
160 PRK10153 DNA-binding transcrip 98.1 0.001 2.3E-08 54.1 17.9 144 61-209 332-489 (517)
161 PF14559 TPR_19: Tetratricopep 98.1 5.1E-05 1.1E-09 43.6 7.8 52 78-130 3-54 (68)
162 PRK15363 pathogenicity island 98.1 0.00013 2.8E-09 48.8 10.3 98 66-165 35-132 (157)
163 PF14938 SNAP: Soluble NSF att 98.0 0.00091 2E-08 50.3 15.8 192 4-197 43-260 (282)
164 PRK10153 DNA-binding transcrip 98.0 0.0014 3E-08 53.4 17.5 144 26-175 332-490 (517)
165 KOG3617 WD40 and TPR repeat-co 98.0 0.00088 1.9E-08 56.0 15.9 165 41-232 810-993 (1416)
166 PF12688 TPR_5: Tetratrico pep 98.0 0.001 2.2E-08 42.8 13.2 53 76-128 11-65 (120)
167 KOG1914 mRNA cleavage and poly 98.0 0.0042 9.1E-08 49.6 18.8 148 82-232 347-498 (656)
168 KOG0985 Vesicle coat protein c 98.0 0.001 2.2E-08 56.8 15.7 196 10-230 1089-1303(1666)
169 KOG3616 Selective LIM binding 97.9 0.00097 2.1E-08 55.2 15.0 53 3-57 622-674 (1636)
170 KOG2376 Signal recognition par 97.9 0.0019 4.1E-08 51.8 16.1 180 38-233 19-202 (652)
171 KOG1127 TPR repeat-containing 97.9 0.0033 7.1E-08 53.7 18.2 215 12-233 474-698 (1238)
172 PF13525 YfiO: Outer membrane 97.9 0.0017 3.8E-08 46.2 14.8 178 37-223 11-195 (203)
173 KOG0985 Vesicle coat protein c 97.9 0.0034 7.4E-08 53.8 18.1 159 7-194 1059-1217(1666)
174 KOG2796 Uncharacterized conser 97.9 0.0038 8.3E-08 45.3 17.3 133 32-165 178-315 (366)
175 KOG0548 Molecular co-chaperone 97.9 0.0069 1.5E-07 48.1 18.9 194 3-201 231-456 (539)
176 PF12688 TPR_5: Tetratrico pep 97.9 0.0012 2.6E-08 42.5 12.4 54 6-59 11-66 (120)
177 KOG0624 dsRNA-activated protei 97.9 0.0058 1.3E-07 46.2 18.9 192 39-234 114-335 (504)
178 KOG4162 Predicted calmodulin-b 97.9 0.01 2.2E-07 49.3 19.5 207 26-234 318-541 (799)
179 KOG0553 TPR repeat-containing 97.9 0.00054 1.2E-08 50.3 11.3 102 40-145 90-191 (304)
180 KOG0553 TPR repeat-containing 97.8 0.0004 8.7E-09 51.0 10.4 97 6-106 91-187 (304)
181 PF14559 TPR_19: Tetratricopep 97.8 0.00023 5E-09 40.8 7.6 52 43-95 3-54 (68)
182 PF13414 TPR_11: TPR repeat; P 97.8 0.0002 4.2E-09 41.2 7.2 61 32-93 4-65 (69)
183 PF13432 TPR_16: Tetratricopep 97.8 0.00014 3E-09 41.3 5.9 52 41-93 7-58 (65)
184 COG4700 Uncharacterized protei 97.8 0.0052 1.1E-07 42.3 16.2 132 62-197 85-219 (251)
185 PF13414 TPR_11: TPR repeat; P 97.7 0.00049 1.1E-08 39.5 8.1 65 65-130 2-67 (69)
186 PF13432 TPR_16: Tetratricopep 97.7 0.00041 8.9E-09 39.3 7.6 54 5-59 6-59 (65)
187 PF04840 Vps16_C: Vps16, C-ter 97.7 0.011 2.4E-07 45.2 19.3 110 101-230 177-286 (319)
188 KOG0548 Molecular co-chaperone 97.7 0.0067 1.5E-07 48.2 16.2 164 5-182 307-470 (539)
189 KOG2796 Uncharacterized conser 97.7 0.0012 2.6E-08 47.8 11.0 138 2-142 183-325 (366)
190 PF13525 YfiO: Outer membrane 97.7 0.0034 7.4E-08 44.7 13.4 177 4-191 13-198 (203)
191 COG4235 Cytochrome c biogenesi 97.6 0.009 2E-07 44.2 14.8 102 98-201 153-257 (287)
192 PF03704 BTAD: Bacterial trans 97.6 0.00031 6.7E-09 47.2 6.8 73 32-105 63-140 (146)
193 PF12921 ATP13: Mitochondrial 97.6 0.0011 2.3E-08 43.2 8.9 48 132-179 48-96 (126)
194 KOG1127 TPR repeat-containing 97.6 0.0077 1.7E-07 51.6 15.7 183 47-236 474-660 (1238)
195 COG4235 Cytochrome c biogenesi 97.6 0.008 1.7E-07 44.5 14.1 114 63-180 153-269 (287)
196 KOG3617 WD40 and TPR repeat-co 97.6 0.003 6.4E-08 53.0 12.8 199 5-231 737-963 (1416)
197 PRK10803 tol-pal system protei 97.6 0.0021 4.5E-08 47.6 10.9 97 32-130 144-246 (263)
198 PF12921 ATP13: Mitochondrial 97.6 0.0035 7.6E-08 40.8 10.6 52 166-217 47-99 (126)
199 PF03704 BTAD: Bacterial trans 97.5 0.0021 4.5E-08 43.1 9.9 71 138-209 64-139 (146)
200 PRK10803 tol-pal system protei 97.5 0.0041 8.9E-08 46.1 11.9 98 66-165 143-246 (263)
201 PF13371 TPR_9: Tetratricopept 97.5 0.0014 3.1E-08 38.0 7.8 56 4-60 3-58 (73)
202 PF13371 TPR_9: Tetratricopept 97.5 0.0012 2.5E-08 38.4 7.0 50 43-93 7-56 (73)
203 PRK15331 chaperone protein Sic 97.4 0.0035 7.6E-08 42.3 9.7 91 38-130 44-134 (165)
204 PF04840 Vps16_C: Vps16, C-ter 97.4 0.034 7.3E-07 42.5 17.4 110 67-196 178-287 (319)
205 PF13424 TPR_12: Tetratricopep 97.4 0.001 2.2E-08 39.3 6.1 61 33-93 7-73 (78)
206 PF13281 DUF4071: Domain of un 97.2 0.066 1.4E-06 41.6 16.8 166 68-235 143-334 (374)
207 PF13424 TPR_12: Tetratricopep 97.2 0.0013 2.8E-08 38.8 5.3 61 67-127 6-72 (78)
208 PF04053 Coatomer_WDAD: Coatom 97.2 0.041 8.8E-07 44.1 14.9 130 33-195 297-426 (443)
209 KOG2610 Uncharacterized conser 97.2 0.064 1.4E-06 40.7 15.2 152 8-161 115-272 (491)
210 KOG1538 Uncharacterized conser 97.1 0.033 7.1E-07 45.9 13.3 90 135-235 746-846 (1081)
211 KOG1130 Predicted G-alpha GTPa 97.1 0.0074 1.6E-07 46.7 9.1 231 6-237 27-346 (639)
212 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.043 9.4E-07 43.4 13.2 64 65-130 74-141 (453)
213 PF04053 Coatomer_WDAD: Coatom 97.0 0.05 1.1E-06 43.6 13.9 157 41-233 271-429 (443)
214 KOG2610 Uncharacterized conser 97.0 0.042 9.1E-07 41.6 12.3 152 44-197 116-273 (491)
215 smart00299 CLH Clathrin heavy 97.0 0.05 1.1E-06 36.1 14.5 43 36-79 12-54 (140)
216 PRK15331 chaperone protein Sic 96.9 0.059 1.3E-06 36.5 13.6 86 112-199 48-133 (165)
217 KOG3941 Intermediate in Toll s 96.9 0.011 2.3E-07 43.5 8.7 87 65-151 66-173 (406)
218 KOG0543 FKBP-type peptidyl-pro 96.9 0.053 1.1E-06 42.0 12.6 62 68-130 259-320 (397)
219 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.031 6.7E-07 44.2 11.3 66 98-165 72-141 (453)
220 COG3898 Uncharacterized membra 96.9 0.14 3.1E-06 39.7 21.0 81 44-128 133-215 (531)
221 COG4700 Uncharacterized protei 96.9 0.08 1.7E-06 36.7 17.6 151 71-225 61-212 (251)
222 PF13281 DUF4071: Domain of un 96.8 0.15 3.3E-06 39.7 19.9 168 32-201 142-335 (374)
223 KOG3941 Intermediate in Toll s 96.8 0.021 4.5E-07 42.1 9.4 100 28-127 64-185 (406)
224 KOG1585 Protein required for f 96.8 0.11 2.3E-06 37.7 14.0 189 4-195 39-251 (308)
225 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.14 3.1E-06 40.5 14.2 130 32-164 398-530 (660)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.14 3.1E-06 40.5 13.5 146 67-218 398-547 (660)
227 PF10300 DUF3808: Protein of u 96.7 0.26 5.6E-06 40.1 17.3 157 39-198 196-374 (468)
228 PF10300 DUF3808: Protein of u 96.7 0.16 3.4E-06 41.3 14.5 158 74-234 196-375 (468)
229 COG1729 Uncharacterized protei 96.7 0.071 1.5E-06 39.1 11.2 99 31-130 142-244 (262)
230 KOG0543 FKBP-type peptidyl-pro 96.7 0.061 1.3E-06 41.7 11.2 99 99-200 255-355 (397)
231 KOG2041 WD40 repeat protein [G 96.6 0.046 1E-06 45.5 10.6 52 136-196 852-903 (1189)
232 COG4105 ComL DNA uptake lipopr 96.6 0.18 4E-06 36.8 20.3 169 29-199 33-232 (254)
233 COG1729 Uncharacterized protei 96.5 0.13 2.7E-06 37.9 11.6 98 66-165 142-244 (262)
234 smart00299 CLH Clathrin heavy 96.5 0.13 2.8E-06 34.1 15.7 127 69-218 10-137 (140)
235 PF10602 RPN7: 26S proteasome 96.4 0.17 3.8E-06 35.2 11.7 61 33-93 38-100 (177)
236 KOG0550 Molecular chaperone (D 96.4 0.23 5.1E-06 38.8 13.0 115 114-234 216-349 (486)
237 KOG1941 Acetylcholine receptor 96.4 0.11 2.4E-06 39.9 11.0 227 7-233 17-273 (518)
238 PF13428 TPR_14: Tetratricopep 96.3 0.027 5.8E-07 29.0 5.5 27 69-95 4-30 (44)
239 PF08631 SPO22: Meiosis protei 96.2 0.35 7.6E-06 36.4 23.1 225 6-233 3-273 (278)
240 PF13170 DUF4003: Protein of u 96.2 0.37 8E-06 36.6 15.1 128 13-142 79-223 (297)
241 KOG4555 TPR repeat-containing 96.2 0.18 3.8E-06 32.8 10.7 92 75-167 52-146 (175)
242 COG4105 ComL DNA uptake lipopr 96.1 0.33 7.2E-06 35.5 18.1 159 6-165 44-233 (254)
243 KOG2114 Vacuolar assembly/sort 96.1 0.2 4.3E-06 42.7 12.0 116 3-128 341-458 (933)
244 PF13512 TPR_18: Tetratricopep 96.1 0.22 4.7E-06 33.0 10.2 80 33-113 13-94 (142)
245 COG3629 DnrI DNA-binding trans 96.1 0.15 3.2E-06 38.1 10.2 79 137-216 154-237 (280)
246 COG3629 DnrI DNA-binding trans 96.1 0.12 2.6E-06 38.5 9.7 79 101-180 153-236 (280)
247 KOG2114 Vacuolar assembly/sort 96.1 0.27 5.9E-06 41.9 12.6 139 6-162 378-516 (933)
248 PF09205 DUF1955: Domain of un 96.1 0.21 4.6E-06 32.5 13.9 63 139-202 89-151 (161)
249 PF07035 Mic1: Colon cancer-as 96.0 0.29 6.3E-06 33.5 15.1 31 53-83 16-46 (167)
250 PF10602 RPN7: 26S proteasome 95.9 0.25 5.4E-06 34.4 10.4 94 103-198 38-140 (177)
251 PF13170 DUF4003: Protein of u 95.9 0.51 1.1E-05 35.8 17.5 152 46-199 77-249 (297)
252 PF13428 TPR_14: Tetratricopep 95.9 0.027 6E-07 28.9 4.3 26 139-164 4-29 (44)
253 COG3118 Thioredoxin domain-con 95.7 0.58 1.3E-05 35.0 17.6 147 74-225 142-291 (304)
254 KOG4555 TPR repeat-containing 95.7 0.31 6.7E-06 31.8 10.7 92 39-131 51-145 (175)
255 PF02259 FAT: FAT domain; Int 95.7 0.73 1.6E-05 35.8 14.8 54 3-60 5-58 (352)
256 KOG2041 WD40 repeat protein [G 95.6 0.61 1.3E-05 39.3 12.6 183 28-230 689-902 (1189)
257 KOG4570 Uncharacterized conser 95.6 0.66 1.4E-05 35.1 11.7 104 60-165 58-164 (418)
258 KOG1538 Uncharacterized conser 95.6 0.34 7.4E-06 40.3 11.1 81 110-201 756-847 (1081)
259 COG0457 NrfG FOG: TPR repeat [ 95.5 0.57 1.2E-05 33.2 23.4 221 11-233 38-263 (291)
260 PF13176 TPR_7: Tetratricopept 95.3 0.064 1.4E-06 26.1 4.1 24 69-92 2-25 (36)
261 COG3118 Thioredoxin domain-con 95.3 0.9 1.9E-05 34.1 16.6 145 39-186 142-287 (304)
262 PF07035 Mic1: Colon cancer-as 95.3 0.6 1.3E-05 32.0 14.5 135 16-164 14-148 (167)
263 KOG4570 Uncharacterized conser 95.2 0.31 6.8E-06 36.8 9.1 103 26-130 59-164 (418)
264 cd00923 Cyt_c_Oxidase_Va Cytoc 95.2 0.28 6.1E-06 29.9 7.2 45 154-198 25-69 (103)
265 PF02284 COX5A: Cytochrome c o 95.2 0.22 4.8E-06 30.7 6.8 45 119-163 28-72 (108)
266 KOG1920 IkappaB kinase complex 95.1 0.93 2E-05 40.4 12.7 80 108-196 972-1051(1265)
267 KOG2280 Vacuolar assembly/sort 95.1 0.76 1.6E-05 38.9 11.7 115 63-196 681-795 (829)
268 COG0457 NrfG FOG: TPR repeat [ 95.1 0.79 1.7E-05 32.5 22.3 194 4-201 67-266 (291)
269 PF09205 DUF1955: Domain of un 95.0 0.59 1.3E-05 30.6 12.4 61 174-235 89-149 (161)
270 PF13176 TPR_7: Tetratricopept 95.0 0.08 1.7E-06 25.8 3.9 25 174-198 2-26 (36)
271 cd00923 Cyt_c_Oxidase_Va Cytoc 94.9 0.39 8.4E-06 29.4 7.3 60 49-109 25-84 (103)
272 PF09613 HrpB1_HrpK: Bacterial 94.9 0.75 1.6E-05 31.2 13.3 51 78-130 22-73 (160)
273 KOG2280 Vacuolar assembly/sort 94.8 2.2 4.7E-05 36.3 16.6 115 98-231 681-795 (829)
274 KOG1550 Extracellular protein 94.8 2.1 4.5E-05 35.9 18.6 183 12-202 228-428 (552)
275 PF00637 Clathrin: Region in C 94.7 0.026 5.6E-07 37.7 2.4 52 39-90 15-66 (143)
276 COG3898 Uncharacterized membra 94.6 1.7 3.7E-05 34.1 21.6 157 7-169 131-296 (531)
277 KOG1920 IkappaB kinase complex 94.6 2.5 5.5E-05 37.9 14.0 83 143-236 972-1056(1265)
278 COG1747 Uncharacterized N-term 94.6 2.1 4.5E-05 34.9 18.0 180 29-216 64-249 (711)
279 PF02284 COX5A: Cytochrome c o 94.5 0.65 1.4E-05 28.7 9.4 64 152-216 26-89 (108)
280 PF00637 Clathrin: Region in C 94.5 0.024 5.2E-07 37.8 1.7 128 2-151 13-140 (143)
281 KOG1585 Protein required for f 94.5 1.4 3E-05 32.3 12.9 90 69-159 153-250 (308)
282 KOG0550 Molecular chaperone (D 94.4 2 4.4E-05 33.9 15.8 154 5-165 178-350 (486)
283 PF07079 DUF1347: Protein of u 94.4 2.2 4.7E-05 34.2 13.3 139 41-184 16-180 (549)
284 PF09613 HrpB1_HrpK: Bacterial 94.4 1 2.3E-05 30.5 11.8 112 109-227 18-130 (160)
285 PF13512 TPR_18: Tetratricopep 94.4 0.96 2.1E-05 30.1 12.5 54 77-130 21-76 (142)
286 PF13431 TPR_17: Tetratricopep 94.3 0.079 1.7E-06 25.5 2.9 21 100-120 12-32 (34)
287 PF07163 Pex26: Pex26 protein; 93.9 1.5 3.2E-05 32.7 9.7 118 7-124 46-181 (309)
288 PF11207 DUF2989: Protein of u 93.6 1.3 2.9E-05 31.3 8.9 70 155-225 125-197 (203)
289 COG1747 Uncharacterized N-term 93.6 3.4 7.4E-05 33.8 18.9 165 63-235 63-234 (711)
290 PF04184 ST7: ST7 protein; In 93.6 3.4 7.3E-05 33.6 18.7 75 71-145 264-340 (539)
291 PF11207 DUF2989: Protein of u 93.6 1.3 2.8E-05 31.3 8.8 75 46-121 121-198 (203)
292 PRK11906 transcriptional regul 93.6 3.3 7.1E-05 33.4 15.4 160 32-196 252-432 (458)
293 PRK11906 transcriptional regul 93.5 3.3 7.1E-05 33.4 16.7 145 12-161 274-432 (458)
294 PF07079 DUF1347: Protein of u 93.3 3.6 7.8E-05 33.0 18.9 137 6-147 16-178 (549)
295 PF13374 TPR_10: Tetratricopep 93.1 0.34 7.5E-06 24.0 4.3 27 67-93 3-29 (42)
296 PF13431 TPR_17: Tetratricopep 93.1 0.17 3.6E-06 24.3 2.8 22 65-86 12-33 (34)
297 COG4649 Uncharacterized protei 93.0 2.1 4.5E-05 29.6 13.1 139 30-169 58-200 (221)
298 PF13374 TPR_10: Tetratricopep 92.7 0.4 8.6E-06 23.8 4.2 25 138-162 4-28 (42)
299 COG4649 Uncharacterized protei 92.7 2.4 5.1E-05 29.4 14.1 140 65-205 58-201 (221)
300 PF13929 mRNA_stabil: mRNA sta 92.4 3.6 7.9E-05 30.9 18.0 121 97-217 160-289 (292)
301 KOG1586 Protein required for f 92.3 3 6.5E-05 30.4 9.2 90 150-240 128-226 (288)
302 PF00515 TPR_1: Tetratricopept 92.3 0.47 1E-05 22.4 4.0 24 139-162 4-27 (34)
303 PRK15180 Vi polysaccharide bio 92.2 5.5 0.00012 32.4 12.0 120 8-131 301-421 (831)
304 PF00515 TPR_1: Tetratricopept 92.1 0.67 1.5E-05 21.8 4.5 28 68-95 3-30 (34)
305 PF13929 mRNA_stabil: mRNA sta 91.5 4.8 0.0001 30.3 15.9 136 46-181 143-288 (292)
306 TIGR02561 HrpB1_HrpK type III 91.5 3 6.5E-05 28.0 12.2 51 78-130 22-73 (153)
307 PF08631 SPO22: Meiosis protei 91.4 5 0.00011 30.3 18.5 164 42-207 4-193 (278)
308 PF13762 MNE1: Mitochondrial s 91.3 3.1 6.7E-05 27.8 10.6 50 100-149 78-128 (145)
309 COG4785 NlpI Lipoprotein NlpI, 91.3 4.2 9.2E-05 29.3 15.3 162 28-201 95-267 (297)
310 KOG4077 Cytochrome c oxidase, 90.8 2.8 6.1E-05 27.2 7.0 40 159-198 72-111 (149)
311 PF07719 TPR_2: Tetratricopept 90.6 1 2.2E-05 21.0 4.6 26 69-94 4-29 (34)
312 KOG1130 Predicted G-alpha GTPa 90.5 0.86 1.9E-05 36.0 5.5 133 32-164 196-343 (639)
313 KOG0276 Vesicle coat complex C 90.1 9.6 0.00021 32.0 11.1 99 77-196 648-746 (794)
314 COG4455 ImpE Protein of avirul 90.0 2.7 5.9E-05 30.3 7.1 77 68-145 3-81 (273)
315 PF10579 Rapsyn_N: Rapsyn N-te 89.8 1.9 4E-05 25.4 5.2 46 43-88 18-65 (80)
316 PF07719 TPR_2: Tetratricopept 89.7 1.3 2.7E-05 20.7 4.1 27 173-199 3-29 (34)
317 PF07721 TPR_4: Tetratricopept 89.7 0.73 1.6E-05 20.4 2.9 15 109-123 9-23 (26)
318 TIGR03504 FimV_Cterm FimV C-te 89.7 1.3 2.7E-05 22.8 4.0 23 72-94 5-27 (44)
319 PF04097 Nic96: Nup93/Nic96; 89.7 5.9 0.00013 33.8 10.2 87 4-95 266-356 (613)
320 COG0735 Fur Fe2+/Zn2+ uptake r 89.6 3.9 8.4E-05 27.4 7.5 64 158-222 8-71 (145)
321 COG4455 ImpE Protein of avirul 89.5 4.7 0.0001 29.1 7.9 78 33-111 3-82 (273)
322 PF13181 TPR_8: Tetratricopept 89.4 1.3 2.9E-05 20.7 4.3 27 68-94 3-29 (34)
323 PF13174 TPR_6: Tetratricopept 89.2 1.3 2.9E-05 20.4 4.0 19 41-59 10-28 (33)
324 KOG1550 Extracellular protein 88.9 13 0.00028 31.3 17.0 145 47-201 228-394 (552)
325 KOG4077 Cytochrome c oxidase, 88.7 4.9 0.00011 26.1 6.9 46 119-164 67-112 (149)
326 TIGR03504 FimV_Cterm FimV C-te 88.4 1 2.3E-05 23.1 3.2 23 3-25 6-28 (44)
327 KOG0686 COP9 signalosome, subu 88.0 12 0.00026 29.8 15.0 173 33-214 152-352 (466)
328 KOG2066 Vacuolar assembly/sort 88.0 17 0.00037 31.5 11.7 148 4-163 364-532 (846)
329 TIGR02561 HrpB1_HrpK type III 87.9 6.3 0.00014 26.5 10.3 53 112-166 21-74 (153)
330 PF07163 Pex26: Pex26 protein; 87.6 10 0.00022 28.5 12.9 119 41-159 45-181 (309)
331 KOG4648 Uncharacterized conser 87.5 8.9 0.00019 29.8 8.8 55 4-59 105-159 (536)
332 PF13181 TPR_8: Tetratricopept 87.3 2 4.3E-05 20.1 4.2 25 139-163 4-28 (34)
333 KOG0276 Vesicle coat complex C 87.3 7.3 0.00016 32.7 8.7 100 111-231 647-746 (794)
334 KOG4642 Chaperone-dependent E3 87.2 9.8 0.00021 28.0 10.8 118 6-127 20-143 (284)
335 PF10345 Cohesin_load: Cohesin 87.2 18 0.00039 30.9 19.1 185 13-198 38-252 (608)
336 PF11848 DUF3368: Domain of un 87.0 3 6.5E-05 21.8 4.9 33 182-214 13-45 (48)
337 PRK15180 Vi polysaccharide bio 86.9 12 0.00026 30.6 9.6 86 111-198 333-418 (831)
338 KOG4234 TPR repeat-containing 86.8 9.4 0.0002 27.3 8.9 89 75-165 104-197 (271)
339 PF14689 SPOB_a: Sensor_kinase 86.6 2.2 4.8E-05 23.8 4.2 22 72-93 29-50 (62)
340 PF07575 Nucleopor_Nup85: Nup8 86.2 4 8.7E-05 34.4 7.2 34 183-216 507-540 (566)
341 COG3947 Response regulator con 86.1 13 0.00028 28.3 16.0 72 138-210 281-357 (361)
342 PF11838 ERAP1_C: ERAP1-like C 86.1 14 0.00029 28.5 20.1 111 82-196 146-262 (324)
343 PF11848 DUF3368: Domain of un 85.9 3.2 7E-05 21.7 4.3 32 43-74 14-45 (48)
344 KOG1941 Acetylcholine receptor 85.8 16 0.00034 28.8 13.5 130 69-198 125-273 (518)
345 KOG0890 Protein kinase of the 84.8 20 0.00044 35.3 11.2 116 38-162 1390-1509(2382)
346 KOG4234 TPR repeat-containing 84.7 12 0.00027 26.7 10.7 88 41-130 105-197 (271)
347 PF04184 ST7: ST7 protein; In 84.4 21 0.00047 29.3 16.5 56 107-162 265-321 (539)
348 COG0735 Fur Fe2+/Zn2+ uptake r 83.5 8.2 0.00018 25.9 6.5 59 20-79 10-68 (145)
349 PRK10564 maltose regulon perip 83.2 4.4 9.5E-05 30.7 5.5 43 133-175 253-296 (303)
350 COG4785 NlpI Lipoprotein NlpI, 83.2 15 0.00033 26.7 14.9 163 62-234 94-265 (297)
351 COG2909 MalT ATP-dependent tra 83.1 33 0.00071 30.4 17.7 222 5-229 424-682 (894)
352 COG5108 RPO41 Mitochondrial DN 82.8 13 0.00029 31.7 8.5 75 106-183 33-115 (1117)
353 PF10579 Rapsyn_N: Rapsyn N-te 82.6 6.2 0.00013 23.3 4.8 19 104-122 46-64 (80)
354 PF11663 Toxin_YhaV: Toxin wit 82.4 1.7 3.7E-05 28.5 2.8 32 148-181 107-138 (140)
355 PF08424 NRDE-2: NRDE-2, neces 82.4 21 0.00045 27.7 15.2 142 63-206 16-190 (321)
356 COG2909 MalT ATP-dependent tra 82.2 36 0.00077 30.2 17.4 232 4-235 368-647 (894)
357 PF11846 DUF3366: Domain of un 81.8 14 0.00031 26.0 7.6 34 167-200 140-173 (193)
358 PF06552 TOM20_plant: Plant sp 81.4 16 0.00034 25.6 9.4 98 12-112 7-124 (186)
359 PHA02875 ankyrin repeat protei 81.4 18 0.00039 29.0 8.9 79 4-90 7-89 (413)
360 PF11846 DUF3366: Domain of un 81.4 13 0.00027 26.3 7.2 33 98-130 141-173 (193)
361 PF13762 MNE1: Mitochondrial s 80.9 14 0.00031 24.8 12.0 81 104-184 42-128 (145)
362 PRK09687 putative lyase; Provi 80.9 22 0.00048 27.0 22.3 208 4-234 45-262 (280)
363 KOG4507 Uncharacterized conser 80.7 28 0.0006 29.5 9.4 100 9-110 620-719 (886)
364 KOG4567 GTPase-activating prot 80.7 14 0.0003 28.3 7.2 74 51-129 263-346 (370)
365 TIGR02508 type_III_yscG type I 80.5 11 0.00025 23.4 8.1 51 145-201 48-98 (115)
366 PF14689 SPOB_a: Sensor_kinase 80.4 5.3 0.00011 22.3 4.0 19 178-196 30-48 (62)
367 KOG4648 Uncharacterized conser 80.1 18 0.0004 28.2 7.8 89 39-130 105-194 (536)
368 COG5108 RPO41 Mitochondrial DN 80.1 18 0.0004 30.9 8.4 74 1-77 33-114 (1117)
369 PF11817 Foie-gras_1: Foie gra 79.6 21 0.00045 26.5 8.1 21 2-22 16-36 (247)
370 COG3947 Response regulator con 79.1 26 0.00057 26.7 15.3 151 82-236 149-343 (361)
371 COG2976 Uncharacterized protei 78.9 21 0.00045 25.4 14.5 130 65-201 53-189 (207)
372 COG2976 Uncharacterized protei 78.6 21 0.00046 25.4 14.7 85 76-165 99-188 (207)
373 COG4003 Uncharacterized protei 78.4 1.9 4.2E-05 25.3 1.8 36 176-212 36-71 (98)
374 PF11663 Toxin_YhaV: Toxin wit 78.3 1.7 3.8E-05 28.4 1.8 31 114-146 108-138 (140)
375 cd00280 TRFH Telomeric Repeat 77.9 21 0.00046 25.1 7.7 65 117-184 85-156 (200)
376 PRK10564 maltose regulon perip 77.9 9 0.0002 29.1 5.6 42 63-104 253-295 (303)
377 COG5159 RPN6 26S proteasome re 77.5 29 0.00064 26.4 13.2 135 39-173 11-166 (421)
378 PF11817 Foie-gras_1: Foie gra 77.4 18 0.00039 26.8 7.2 77 49-127 163-244 (247)
379 PF10475 DUF2450: Protein of u 77.2 22 0.00047 27.1 7.8 51 107-163 104-154 (291)
380 PF06552 TOM20_plant: Plant sp 77.0 23 0.00049 24.9 8.6 111 47-167 7-138 (186)
381 KOG2297 Predicted translation 76.9 32 0.00068 26.5 13.2 20 171-190 321-340 (412)
382 PF04190 DUF410: Protein of un 76.3 30 0.00065 25.9 17.1 102 8-124 2-113 (260)
383 KOG1258 mRNA processing protei 75.8 47 0.001 28.0 18.6 185 30-220 296-489 (577)
384 cd07153 Fur_like Ferric uptake 75.5 12 0.00025 23.8 5.2 49 141-189 5-53 (116)
385 KOG2063 Vacuolar assembly/sort 75.4 48 0.001 29.7 9.9 115 104-218 507-638 (877)
386 PRK11639 zinc uptake transcrip 75.3 24 0.00053 24.4 7.6 61 128-189 18-78 (169)
387 PF09797 NatB_MDM20: N-acetylt 75.1 39 0.00085 26.7 10.4 71 70-141 184-257 (365)
388 PF01475 FUR: Ferric uptake re 74.5 5.8 0.00013 25.5 3.6 45 36-80 12-56 (120)
389 PF09454 Vps23_core: Vps23 cor 74.2 13 0.00028 21.0 4.4 48 29-77 6-53 (65)
390 PRK09462 fur ferric uptake reg 73.9 24 0.00052 23.7 7.6 49 140-188 20-69 (148)
391 KOG4507 Uncharacterized conser 73.4 22 0.00048 30.0 7.1 103 62-165 603-705 (886)
392 cd07153 Fur_like Ferric uptake 73.3 9.9 0.00021 24.1 4.5 36 46-81 15-50 (116)
393 PHA02875 ankyrin repeat protei 73.2 46 0.001 26.7 11.4 180 3-205 39-229 (413)
394 KOG1464 COP9 signalosome, subu 73.1 38 0.00082 25.6 17.1 183 9-192 40-252 (440)
395 PF01475 FUR: Ferric uptake re 73.1 11 0.00023 24.2 4.6 49 175-223 11-59 (120)
396 PRK09687 putative lyase; Provi 72.8 39 0.00085 25.6 22.2 17 135-151 205-221 (280)
397 cd00280 TRFH Telomeric Repeat 72.8 30 0.00066 24.4 9.8 66 82-150 85-157 (200)
398 PF09797 NatB_MDM20: N-acetylt 72.3 28 0.00062 27.5 7.6 69 36-105 185-256 (365)
399 PRK11639 zinc uptake transcrip 72.1 29 0.00062 24.0 6.7 59 58-117 18-76 (169)
400 KOG2908 26S proteasome regulat 71.4 47 0.001 26.0 8.8 91 67-157 76-178 (380)
401 PF13934 ELYS: Nuclear pore co 71.4 37 0.00081 24.8 11.6 104 68-182 78-183 (226)
402 PF02847 MA3: MA3 domain; Int 71.0 23 0.0005 22.3 7.4 60 2-63 8-69 (113)
403 KOG2396 HAT (Half-A-TPR) repea 70.6 60 0.0013 26.9 11.5 89 14-105 89-178 (568)
404 smart00028 TPR Tetratricopepti 70.5 7.9 0.00017 16.7 3.8 24 35-58 5-28 (34)
405 PF08424 NRDE-2: NRDE-2, neces 70.3 49 0.0011 25.7 17.4 138 28-167 16-185 (321)
406 PF09670 Cas_Cas02710: CRISPR- 70.3 54 0.0012 26.2 11.7 55 40-95 140-198 (379)
407 PF03745 DUF309: Domain of unk 70.1 17 0.00036 20.3 5.2 15 149-163 12-26 (62)
408 KOG3636 Uncharacterized conser 70.1 58 0.0013 26.5 9.1 88 60-148 177-272 (669)
409 KOG2034 Vacuolar sorting prote 69.7 83 0.0018 28.1 14.8 49 4-58 366-416 (911)
410 PF10345 Cohesin_load: Cohesin 69.2 74 0.0016 27.4 17.2 195 29-233 28-252 (608)
411 PF12926 MOZART2: Mitotic-spin 68.9 23 0.00049 21.3 8.0 43 52-94 29-71 (88)
412 TIGR02508 type_III_yscG type I 68.7 26 0.00057 21.9 8.9 49 77-131 50-98 (115)
413 PF02259 FAT: FAT domain; Int 68.2 54 0.0012 25.4 15.0 65 135-199 145-212 (352)
414 PF14853 Fis1_TPR_C: Fis1 C-te 67.9 17 0.00037 19.5 4.2 31 37-69 7-37 (53)
415 PF11123 DNA_Packaging_2: DNA 67.7 22 0.00047 20.6 4.7 36 8-44 9-44 (82)
416 PRK09857 putative transposase; 67.5 54 0.0012 25.1 8.8 66 104-170 209-274 (292)
417 PRK09462 fur ferric uptake reg 67.2 35 0.00076 22.9 6.5 35 82-116 33-67 (148)
418 cd08819 CARD_MDA5_2 Caspase ac 66.9 26 0.00056 21.2 6.7 14 115-128 50-63 (88)
419 PF09868 DUF2095: Uncharacteri 66.8 26 0.00056 22.3 4.9 39 36-75 66-104 (128)
420 KOG1839 Uncharacterized protei 66.0 95 0.0021 29.1 9.8 153 42-194 943-1122(1236)
421 PF02184 HAT: HAT (Half-A-TPR) 65.9 11 0.00023 17.9 2.4 23 11-35 2-24 (32)
422 PF13934 ELYS: Nuclear pore co 65.7 50 0.0011 24.1 11.2 96 111-217 88-183 (226)
423 PF02847 MA3: MA3 domain; Int 65.4 31 0.00068 21.6 7.7 21 107-127 8-28 (113)
424 PF03745 DUF309: Domain of unk 65.1 22 0.00048 19.8 5.2 16 43-58 11-26 (62)
425 KOG3364 Membrane protein invol 65.0 28 0.00061 23.2 5.0 67 28-95 29-100 (149)
426 PRK09857 putative transposase; 64.7 62 0.0013 24.8 8.4 66 69-135 209-274 (292)
427 COG0790 FOG: TPR repeat, SEL1 64.0 61 0.0013 24.5 19.7 191 7-210 52-276 (292)
428 PF02607 B12-binding_2: B12 bi 63.8 17 0.00037 21.1 3.8 40 183-222 13-52 (79)
429 PF09454 Vps23_core: Vps23 cor 63.5 25 0.00054 19.9 5.1 52 62-114 4-55 (65)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 63.2 39 0.00085 22.0 9.0 43 84-126 81-124 (126)
431 KOG3677 RNA polymerase I-assoc 63.0 81 0.0017 25.6 8.1 58 34-91 238-297 (525)
432 PF07575 Nucleopor_Nup85: Nup8 62.5 23 0.0005 30.0 5.6 93 32-128 373-465 (566)
433 PF12862 Apc5: Anaphase-promot 62.3 33 0.00072 20.8 6.8 23 72-94 47-69 (94)
434 PF11838 ERAP1_C: ERAP1-like C 62.1 70 0.0015 24.5 17.6 112 45-161 144-262 (324)
435 PRK10941 hypothetical protein; 61.9 67 0.0015 24.3 8.5 74 66-142 181-254 (269)
436 PF10366 Vps39_1: Vacuolar sor 61.4 39 0.00084 21.4 7.0 27 68-94 41-67 (108)
437 KOG2062 26S proteasome regulat 61.1 1.2E+02 0.0025 26.8 10.9 39 39-77 67-106 (929)
438 PF14669 Asp_Glu_race_2: Putat 60.8 59 0.0013 23.2 15.7 70 25-94 2-79 (233)
439 KOG0686 COP9 signalosome, subu 60.8 88 0.0019 25.3 13.2 168 3-179 157-352 (466)
440 COG4003 Uncharacterized protei 60.2 34 0.00074 20.3 4.5 27 36-62 36-62 (98)
441 KOG0403 Neoplastic transformat 60.1 59 0.0013 26.6 6.9 109 2-116 515-631 (645)
442 KOG2066 Vacuolar assembly/sort 59.9 1.2E+02 0.0027 26.7 13.8 152 38-199 363-533 (846)
443 KOG1308 Hsp70-interacting prot 59.7 26 0.00056 27.3 4.8 91 112-205 125-216 (377)
444 COG5159 RPN6 26S proteasome re 59.7 78 0.0017 24.3 15.0 135 3-137 10-165 (421)
445 PF10475 DUF2450: Protein of u 59.6 77 0.0017 24.2 9.6 114 36-160 103-221 (291)
446 PF02607 B12-binding_2: B12 bi 59.1 28 0.0006 20.2 4.1 36 44-79 14-49 (79)
447 PF10255 Paf67: RNA polymerase 59.0 58 0.0013 26.3 6.8 61 103-163 124-191 (404)
448 KOG2659 LisH motif-containing 58.9 69 0.0015 23.4 6.8 100 28-129 23-131 (228)
449 KOG2471 TPR repeat-containing 58.8 68 0.0015 26.6 7.1 107 6-113 250-381 (696)
450 KOG2297 Predicted translation 58.7 84 0.0018 24.4 13.0 74 142-225 261-340 (412)
451 PF05944 Phage_term_smal: Phag 58.3 51 0.0011 21.8 8.2 31 138-168 50-80 (132)
452 PF10366 Vps39_1: Vacuolar sor 58.3 45 0.00097 21.1 8.0 26 174-199 42-67 (108)
453 PF12862 Apc5: Anaphase-promot 58.0 40 0.00087 20.5 6.5 21 179-199 49-69 (94)
454 KOG2062 26S proteasome regulat 57.5 1.4E+02 0.003 26.4 9.0 65 48-112 40-106 (929)
455 PRK11619 lytic murein transgly 57.2 1.3E+02 0.0029 26.2 17.4 64 170-234 311-374 (644)
456 PF08870 DUF1832: Domain of un 56.7 29 0.00062 22.2 4.0 33 80-113 62-94 (113)
457 PF10255 Paf67: RNA polymerase 56.5 1.1E+02 0.0023 24.9 8.1 60 68-127 124-190 (404)
458 COG0790 FOG: TPR repeat, SEL1 56.5 85 0.0018 23.7 23.1 151 43-202 53-222 (292)
459 KOG1839 Uncharacterized protei 56.2 1.8E+02 0.0039 27.4 10.4 152 8-159 944-1122(1236)
460 PF09670 Cas_Cas02710: CRISPR- 56.1 1E+02 0.0023 24.6 11.3 56 74-130 139-198 (379)
461 PF04090 RNA_pol_I_TF: RNA pol 55.8 74 0.0016 22.8 6.9 30 67-96 42-71 (199)
462 smart00386 HAT HAT (Half-A-TPR 55.4 19 0.00042 16.0 4.0 27 81-108 2-28 (33)
463 PF09986 DUF2225: Uncharacteri 54.1 82 0.0018 22.8 9.7 50 82-131 141-195 (214)
464 KOG2659 LisH motif-containing 54.1 85 0.0018 23.0 9.2 98 62-161 22-128 (228)
465 KOG1308 Hsp70-interacting prot 53.9 9.9 0.00022 29.5 1.9 86 9-97 127-213 (377)
466 PRK14700 recombination factor 53.9 1E+02 0.0022 23.8 11.1 85 69-153 126-218 (300)
467 PF04097 Nic96: Nup93/Nic96; 53.9 1.5E+02 0.0032 25.7 13.8 42 2-44 117-158 (613)
468 PF07678 A2M_comp: A-macroglob 53.7 89 0.0019 23.1 8.8 82 117-200 115-221 (246)
469 KOG1258 mRNA processing protei 52.4 1.5E+02 0.0032 25.3 18.3 173 7-185 308-489 (577)
470 KOG3677 RNA polymerase I-assoc 52.2 1.3E+02 0.0028 24.5 7.9 57 69-126 238-297 (525)
471 cd08819 CARD_MDA5_2 Caspase ac 52.0 52 0.0011 19.9 6.9 66 50-121 21-86 (88)
472 KOG0687 26S proteasome regulat 51.3 1.2E+02 0.0026 23.8 15.6 116 47-164 84-209 (393)
473 TIGR02710 CRISPR-associated pr 51.1 1.3E+02 0.0028 24.2 10.2 53 4-56 138-196 (380)
474 cd08790 DED_DEDD Death Effecto 50.9 51 0.0011 20.4 4.2 57 43-101 36-92 (97)
475 PF12926 MOZART2: Mitotic-spin 50.2 56 0.0012 19.8 7.9 43 157-199 29-71 (88)
476 KOG1586 Protein required for f 50.1 1.1E+02 0.0023 22.9 18.1 156 44-200 47-224 (288)
477 smart00638 LPD_N Lipoprotein N 49.4 1.7E+02 0.0036 25.0 21.3 183 29-218 308-506 (574)
478 KOG0991 Replication factor C, 49.2 1.1E+02 0.0024 22.9 15.7 104 76-183 169-284 (333)
479 smart00544 MA3 Domain in DAP-5 49.1 65 0.0014 20.2 9.2 59 2-62 8-68 (113)
480 KOG0890 Protein kinase of the 49.0 3.2E+02 0.0068 28.1 19.5 63 171-236 1670-1732(2382)
481 KOG2582 COP9 signalosome, subu 48.5 1.4E+02 0.003 23.8 7.7 56 111-166 287-346 (422)
482 COG2137 OraA Uncharacterized p 48.4 93 0.002 21.8 10.0 45 85-131 54-98 (174)
483 KOG4521 Nuclear pore complex, 47.5 2.5E+02 0.0054 26.5 14.5 154 5-161 929-1127(1480)
484 COG2405 Predicted nucleic acid 47.2 57 0.0012 21.8 4.2 42 173-215 112-153 (157)
485 PF04910 Tcf25: Transcriptiona 46.9 1.5E+02 0.0032 23.7 17.5 27 66-92 40-66 (360)
486 KOG4567 GTPase-activating prot 46.7 1.4E+02 0.003 23.3 9.3 87 86-181 263-359 (370)
487 KOG0376 Serine-threonine phosp 46.4 76 0.0016 26.1 5.6 105 38-147 11-116 (476)
488 PF00244 14-3-3: 14-3-3 protei 46.2 1.2E+02 0.0026 22.4 12.8 59 2-60 7-66 (236)
489 PF09868 DUF2095: Uncharacteri 46.0 79 0.0017 20.3 5.4 36 178-214 68-103 (128)
490 KOG0376 Serine-threonine phosp 45.8 87 0.0019 25.8 5.9 106 4-115 12-119 (476)
491 KOG2422 Uncharacterized conser 44.9 2E+02 0.0043 24.6 15.5 16 206-221 483-498 (665)
492 PRK13342 recombination factor 44.7 1.7E+02 0.0037 23.7 17.9 55 114-168 243-302 (413)
493 PF08311 Mad3_BUB1_I: Mad3/BUB 44.2 89 0.0019 20.4 9.6 43 154-196 81-124 (126)
494 KOG0687 26S proteasome regulat 43.8 1.6E+02 0.0034 23.2 13.4 134 62-199 66-209 (393)
495 PF00244 14-3-3: 14-3-3 protei 43.7 1.3E+02 0.0028 22.2 11.2 59 36-94 6-65 (236)
496 KOG1166 Mitotic checkpoint ser 43.6 2.7E+02 0.0058 25.8 9.5 61 43-103 90-151 (974)
497 COG4259 Uncharacterized protei 42.4 85 0.0019 19.7 7.1 47 47-93 53-99 (121)
498 KOG2471 TPR repeat-containing 41.9 2.1E+02 0.0046 24.0 9.7 107 110-218 249-381 (696)
499 KOG4814 Uncharacterized conser 41.5 2.4E+02 0.0052 24.6 9.9 92 33-127 357-454 (872)
500 PF07443 HARP: HepA-related pr 41.1 13 0.00027 20.2 0.5 34 10-43 6-39 (55)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-45 Score=309.02 Aligned_cols=231 Identities=17% Similarity=0.303 Sum_probs=102.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~ 557 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHH--hCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHH
Q 046446 82 IVESVELFRTLRI--LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159 (244)
Q Consensus 82 ~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (244)
+++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444444444433 23344444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhh
Q 046446 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 160 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.||.+|++.|++++|.++|+.|
T Consensus 638 ~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444444444444444444433
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-45 Score=308.95 Aligned_cols=234 Identities=20% Similarity=0.360 Sum_probs=154.2
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR--DGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~ 79 (244)
||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 5666666666666666666666666666666666666666666666666666666654 45666666666666666666
Q ss_pred CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHH
Q 046446 80 GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (244)
|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 160 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|+++|+.|.+.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666544
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-42 Score=284.11 Aligned_cols=225 Identities=26% Similarity=0.364 Sum_probs=213.8
Q ss_pred ChhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 1 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
+||++|++.|++++|.++|++|. ++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 37899999999999999999996 46899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
++++|.+++..|.+.|++|+..+|++|+.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 688999999999999999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE-KNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 161 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
+|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|+.++|.++++.+.
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999986 5999999999999999999999999999988764
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=282.36 Aligned_cols=233 Identities=21% Similarity=0.306 Sum_probs=207.3
Q ss_pred ChhhhhhhcCChhHHHHHHHHHHhCCCCCChh-----------------------------------hHHHHHHHHhhhc
Q 046446 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVV-----------------------------------IHNTLFIGLFEIH 45 (244)
Q Consensus 1 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------------~~~~li~~~~~~~ 45 (244)
+||.+|++.|++++|.++|++|.+.|+.|+.. +|+.+|.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 47889999999999999999998776666544 5567777888888
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (244)
++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 88888888888853 58888999999999999999999999999888989999999999999999999999999999
Q ss_pred hcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 046446 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 126 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
.|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999899999999999999999999999999998864 7999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhccccccchhhhhhhhhhhccccc
Q 046446 206 ASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDES 241 (244)
Q Consensus 206 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 241 (244)
..||+.++.+|.+.|+.+++.++|+.|.+...+.|+
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999887666664
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-40 Score=279.10 Aligned_cols=230 Identities=20% Similarity=0.279 Sum_probs=215.6
Q ss_pred ChhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 1 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
+||.+|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 47889999999999999999987 46889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|.++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999974 688899999999999999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhhcc
Q 046446 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEV 238 (244)
Q Consensus 161 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (244)
+|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+++|++.|+.++|.++|+.|.+.+.+
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7e-39 Score=271.23 Aligned_cols=227 Identities=24% Similarity=0.358 Sum_probs=129.0
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcc----------------------------
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV---------------------------- 133 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------- 133 (244)
+++|.++|++|.+ +|..+|+++|.+|++.|+.++|..+|++|.. ++.
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 5555555554432 3344444444444444444444444444432 123
Q ss_pred -------------------------------------ccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHH
Q 046446 134 -------------------------------------ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176 (244)
Q Consensus 134 -------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 176 (244)
||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 3444555666666666666666666666666666666666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 177 LIHGFIRINEPSKVIELLHKMK-EKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++++|.+.|+.++|.++++.|.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 6666666666666666666666 45666666666666666666666666666666653
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.4e-20 Score=145.09 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=156.0
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHh
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT----RTYTIFIDGLCK 78 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~ 78 (244)
...|.+.|+++.|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 455667777777777777776642 345566777777777777777777777777665433221 234456666677
Q ss_pred CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHH
Q 046446 79 NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|.+.
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3445566677777777788888888877777653222245567777777788888888888
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---ccccccchhhhhhhhhh
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK---NEISLNSLPSFTVHERQ 235 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 235 (244)
++.+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+.. .|+..+++..++.+.++
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 8777764 355556677777777788888888888777665 4777777777766654 45777777777777765
Q ss_pred hc
Q 046446 236 EE 237 (244)
Q Consensus 236 ~~ 237 (244)
..
T Consensus 348 ~~ 349 (389)
T PRK11788 348 QL 349 (389)
T ss_pred HH
Confidence 53
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.6e-19 Score=140.13 Aligned_cols=229 Identities=14% Similarity=0.143 Sum_probs=150.5
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPD---VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
...+.+.|++++|..+++.+...+..++ ...+..+...|...|+++.|..+|+++.+. .+++..++..++..+.+.
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQE 154 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHh
Confidence 3456667777777777777666421111 234566666677777777777777777654 233556677777777777
Q ss_pred CcHHHHHHHHHHHHHhCCCcc----HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 80 GYIVESVELFRTLRILKCELD----IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHH
Confidence 777777777777766542221 1234456666677777777777777776543 23455666777777777888888
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.++++++.+.+......+++.+..+|...|++++|...++++.+. .|+...+..++..+.+.|++++|...++.+.+.
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 887777776432222455677777777788888888888777765 355566677777788888888888777766543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=1.5e-17 Score=142.72 Aligned_cols=220 Identities=10% Similarity=0.024 Sum_probs=122.8
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+++...+ |+..++..+..++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 333444444444444444332 2233344444444445555555555555544432 3334444455555555555555
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
.+.++++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+..+++.+...+...|+ .+|...++.+.+.
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 55555555443 3455555555566666666666666666655543 3445556666666666666 5566666655543
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 166 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
. +-+..++..+...+...|++++|...++++.+.+.. +..++..+..++.+.|+.++|.++++.+.
T Consensus 833 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 A-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2 123444556666667777777777777777776533 66777777777777777777777776653
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=4.2e-17 Score=139.98 Aligned_cols=226 Identities=12% Similarity=0.093 Sum_probs=137.5
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+.+.|++++|..+++.+.+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 345555666666666666665542 3445566666666666666666666666665542 22445566666666666666
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++|...++++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666665543 3445566666666666666666666666665553 345555666666666666666666666666
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 163 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|.+.|+.++|...|+.+...
T Consensus 730 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 730 LKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 6543 334555556666666666666666666666543 335556666666666677777776666665543
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=1.2e-14 Score=120.05 Aligned_cols=226 Identities=14% Similarity=0.025 Sum_probs=175.6
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
..+...|++++|+..|+..... .|+ ...|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3456789999999999998876 344 5577788888888999999999999887763 33577888889999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|+..
T Consensus 416 ~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 416 AQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999988765 4567778888889999999999999999887653 445778888999999999999999999998
Q ss_pred HHcCCCCcH------hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 163 EENAVAPNV------ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 163 ~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.+.....+. ..++.....+...|++++|..++++...... .+...+..+...+.+.|++++|+..|+...+.
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 764321111 1122222334446899999999999877642 24456788999999999999999999876543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=1.1e-14 Score=120.31 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=105.5
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHH-
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI- 119 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~- 119 (244)
+...|++++|...++.+.+....++......+..++.+.|++++|+..+++..+.. +.+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence 33444444444444444433222222333333445555566666666666555543 3445555556666666666654
Q ss_pred ---HHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 120 ---ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 120 ---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
|...|++..+.. +.+...+..+...+...|++++|...++...+... .+...+..+..++...|++++|...+++
T Consensus 266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666665543 33455666666666677777777777766665422 2344555566666677777777777776
Q ss_pred HHHCCCCCCh-hhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 197 MKEKNVMPDA-SIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 197 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
+...+ |+. ..+..+..++...|+.++|+..|+...+.
T Consensus 344 al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 344 LAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66543 333 22333455666777777777777665443
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=2.2e-14 Score=118.65 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=123.8
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 3444455555555555544431 222334444444455555555555555544433211 11122222 22444555555
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHH----HHHHHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK----AHDLFL 160 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~ 160 (244)
|...++.+.+....++...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 55555554443222223333344455666666666666666665543 3345566666777777777764 677777
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 161 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
...+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|+..|+.+.+.
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 766542 2245566777777777778888877777777653 223455666777777788888887777766543
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=7.4e-16 Score=115.22 Aligned_cols=219 Identities=16% Similarity=0.130 Sum_probs=93.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 87 (244)
..++++.|.+.++++...+ +-++..+..++.. ...+++++|.+++....+. .+++..+...+..+.+.++++++.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHH
Confidence 3455555555555555543 1234444444444 4556666666666555443 2455556666677777777777777
Q ss_pred HHHHHHHhC-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 88 LFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 88 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
+++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+.. +.|....+.++..+...|+.+++.+++....+..
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 777765432 34566677777777778888888888887777653 2246667777777777777777777777766543
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 167 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
+.|+..+..+..++...|+.++|..++++..... +.|..+...+.+++...|+.++|.++....-
T Consensus 211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred -cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 3455566777777777888888888888777643 2366777777788888888888877766543
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=3.5e-16 Score=116.94 Aligned_cols=230 Identities=14% Similarity=0.077 Sum_probs=102.6
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKG-IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 456788999999999997655543 2334555666666777789999999999999887544 66677777777 78899
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-ccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
+++|.++++...+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999877654 3567778889999999999999999999976432 34678889999999999999999999999
Q ss_pred HHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhhccc
Q 046446 161 DMEENAVAP-NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239 (244)
Q Consensus 161 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (244)
...+.. | |......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|+...+...-+
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 998863 4 57788889999999999999999999888764 4566778899999999999999999999887654433
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=3e-13 Score=111.81 Aligned_cols=223 Identities=11% Similarity=-0.012 Sum_probs=178.5
Q ss_pred cCChhHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 9 NKEIEGALNLYSEMLSKG-IKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
.+++++|.+.|+.....+ ..| ....|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 368999999999998764 223 45568888888889999999999999998862 224668888999999999999999
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
..|++..+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|+...+..
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998875 5678899999999999999999999999998874 4457788889999999999999999999988752
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS------IVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 167 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
+.+...++.+...+...|++++|...|++........+.. .+......+...|++++|.+.++.....
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3357788889999999999999999999988753221111 1222223344568999999998876543
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=4e-13 Score=97.51 Aligned_cols=204 Identities=13% Similarity=0.072 Sum_probs=168.1
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (244)
......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 3446678888899999999999999999988763 3356788889999999999999999999998875 4567788889
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCc-cccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 046446 108 IDGLCKSGRLEIALELFHSLPRGVL-VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 186 (244)
...+...|++++|...+++...... +.....+..+...+...|++++|...++...+.. +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999876421 2245567778889999999999999999988753 2346678888899999999
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 187 PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
+++|...+++.... .+.+...+..+...+...|+.+++..+.+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998876 3446677778888999999999999988876553
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=5.5e-13 Score=96.78 Aligned_cols=194 Identities=11% Similarity=0.047 Sum_probs=160.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccH
Confidence 467788999999999999998763 4456778888899999999999999999998864 33667788889999999999
Q ss_pred HHHHHHHHHHHHhCC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 83 VESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
++|.+.+++..+... +.....+..+..++...|++++|...+.+..... +.+...+..+...+...|++++|...+++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999987532 2345567778889999999999999999988764 33567888999999999999999999999
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8876 3446667777788888999999999988877543
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=7.6e-13 Score=112.74 Aligned_cols=218 Identities=10% Similarity=0.009 Sum_probs=172.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHH
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
.+++++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|.+.
T Consensus 489 ~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 489 DTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred hCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888899988888776 466544444455556889999999999987654 45555667778888899999999999
Q ss_pred HHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 046446 89 FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (244)
+++..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...++...+.. +
T Consensus 565 l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-P 640 (987)
T PRK09782 565 LQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-P 640 (987)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 99998765 344444444555556679999999999999876 4678889999999999999999999999988764 2
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 169 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.+...++.+..++...|++++|...+++..+.. +-+...+..+..++...|++++|+..|+.....
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 356677778888999999999999999988764 235677888999999999999999998877543
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.61 E-value=1e-12 Score=115.54 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=165.6
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...++.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHH
Confidence 34567899999999999998873 3356677888889999999999999999988752 223444433333444455555
Q ss_pred HHHHHHHHHHHh---------------------------------------CCCccHHhHHHHHHHHHcCCCHHHHHHHH
Q 046446 84 ESVELFRTLRIL---------------------------------------KCELDIQAYSCLIDGLCKSGRLEIALELF 124 (244)
Q Consensus 84 ~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (244)
+|...++.+... ..+.+...+..+...+...|++++|...|
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 555544432110 12455566777888888999999999999
Q ss_pred HhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--
Q 046446 125 HSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-- 202 (244)
Q Consensus 125 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 202 (244)
++..+.. +.+...+..++..+...|++++|.+.++...+.. +.+...+..+..++...|++++|.++++++.....
T Consensus 627 ~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 627 QRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 9888764 4467888889999999999999999998776542 22455566677788889999999999998876532
Q ss_pred CC---ChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 203 MP---DASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 203 ~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
.| +...+..+...+.+.|+.++|+..|+......
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 22 22455666788889999999999988876543
No 21
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=1.5e-12 Score=101.87 Aligned_cols=218 Identities=7% Similarity=-0.001 Sum_probs=162.1
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHH--HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHN--TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+.. +-++.....+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 36778888888888888765 45554333 33456677788888888888887764 225667777788888888888
Q ss_pred HHHHHHHHHHHhCC-----------------------------------------CccHHhHHHHHHHHHcCCCHHHHHH
Q 046446 84 ESVELFRTLRILKC-----------------------------------------ELDIQAYSCLIDGLCKSGRLEIALE 122 (244)
Q Consensus 84 ~a~~~~~~~~~~~~-----------------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~ 122 (244)
+|.+++..+.+.+. +.++.....+...+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88877777664432 1234455566777888899999999
Q ss_pred HHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046446 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202 (244)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 202 (244)
++++..+. +|+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 98888774 4554222 3344445688899999998887653 235666788889999999999999999999875
Q ss_pred CCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 203 MPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 203 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
.|+..++..+...+.+.|+.++|.++++...
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5999999999999999999999999998654
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=2e-12 Score=105.36 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=160.9
Q ss_pred CChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhh---------hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 10 KEIEGALNLYSEMLSKGIKPD-VVIHNTLFIGLFE---------IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
+++++|..+|++..+. .|+ ...|..+..++.. .+++++|...+++..+... -+..++..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 3467899999999887 454 4455555544432 3458999999999988743 3677888888889999
Q ss_pred CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc-HHHHHHHHHHHHccCChHHHHHH
Q 046446 80 GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD-VVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
|++++|...|++..+.+ |.+...+..+...+...|++++|...+++..+.+ |+ ...+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999999886 5667788889999999999999999999998874 33 33344445556678999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+++..+...+-+...+..+..++...|+.++|...+.++... .|+ ......+...|...|+ ++...++.+.+..
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 998876532224455677778888999999999999887654 333 3344556667777774 6766666655543
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=8.9e-13 Score=99.03 Aligned_cols=231 Identities=13% Similarity=0.144 Sum_probs=161.7
Q ss_pred ChhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 1 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
+||.++++--+.++|.+++++......+.+..+||.+|.+-+-... .++..+|......||..|+|+++++.++.|
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg 287 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFG 287 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence 4677788888888888888888777667788888888876543322 667778888888888888888888888888
Q ss_pred cHHH----HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHH-HHHHHHhcc----cCCc----cccHHHHHHHHHHHH
Q 046446 81 YIVE----SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI-ALELFHSLP----RGVL----VADVVTYSIMIHGLY 147 (244)
Q Consensus 81 ~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~----~~~~----~~~~~~~~~li~~~~ 147 (244)
+++. |.+++.+|++-|+.|...+|..+|..+.+.++..+ |..+..++. .... +.|..-|...+..|.
T Consensus 288 ~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 288 KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence 6654 56677778888888888888888888888777644 333333322 1111 224455666777777
Q ss_pred ccCChHHHHHHHHHHHHcC----CCCc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcc
Q 046446 148 NDGQMDKAHDLFLDMEENA----VAPN---VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~----~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (244)
+..+.+-|.++..-..... +.|+ ..-|..+....++....+....+|+.|.-.-+-|+..+...++++....|
T Consensus 368 ~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~ 447 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN 447 (625)
T ss_pred HhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcC
Confidence 8788877777665443211 2222 22345566666777778888888888887777788888888888888888
Q ss_pred ccccchhhhhhhhhh
Q 046446 221 ISLNSLPSFTVHERQ 235 (244)
Q Consensus 221 ~~~~a~~~~~~~~~~ 235 (244)
.++-.-++|..+..-
T Consensus 448 ~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 448 RLEVIPRIWKDSKEY 462 (625)
T ss_pred cchhHHHHHHHHHHh
Confidence 887777777665543
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.1e-13 Score=106.99 Aligned_cols=226 Identities=14% Similarity=0.042 Sum_probs=177.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCC------C---------------------------CCChhhHHHHHHHHhhhchHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKG------I---------------------------KPDVVIHNTLFIGLFEIHQVER 49 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~------~---------------------------~~~~~~~~~li~~~~~~~~~~~ 49 (244)
-.+|...+++++|.++|+.+.+.. . +-++.+|.++.++|+-.++.+.
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~ 439 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDT 439 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHH
Confidence 367889999999999999887652 0 1246778888888888888888
Q ss_pred HHHHHHHHHHcCCCC-ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcc
Q 046446 50 AFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 50 a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (244)
|++.|++..+. .| ...+|+.+..-+....++|.|...|+...... +.+-.+|-.+.-.|.+.++++.|+-.|+...
T Consensus 440 Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 440 AIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred HHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 88888888875 34 67788888888888888888888888877544 3455566667788999999999999999998
Q ss_pred cCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-Chh
Q 046446 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP-DAS 207 (244)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 207 (244)
+.+ +-+.+....+...+-+.|+.++|++++++....... |+..--.....+...+++++|+..++++++. .| +..
T Consensus 517 ~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~ 592 (638)
T KOG1126|consen 517 EIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESS 592 (638)
T ss_pred cCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHH
Confidence 876 456777778888888999999999999998875544 4444445566777789999999999999875 44 556
Q ss_pred hHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 208 IVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.+..+.+.|.+.|+.+.|+.-|..+.+-
T Consensus 593 v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 593 VFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 7788889999999999998888766543
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.59 E-value=1.9e-13 Score=106.93 Aligned_cols=219 Identities=14% Similarity=0.169 Sum_probs=125.8
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhCCcHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 85 (244)
...+.+++|+..|.+..... +.....+..+...|...|.++.|++.|++..+. .|+ ...|+.|..++-..|++.+|
T Consensus 263 ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHH
Confidence 33444444444444444431 122333444444455555566666666555553 222 44566666666666666666
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
.+.|.+..... +....+.+.|...|...|.+++|..+|....+.. +.-...++.|...|-..|++++|...+++...
T Consensus 340 ~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr- 416 (966)
T KOG4626|consen 340 VDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR- 416 (966)
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-
Confidence 66666665543 3345556666666666666666666666655542 11244566666666666777777666666654
Q ss_pred CCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 166 AVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 166 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
+.|+ ...|+.+...|-..|+...|.+.+.+...-+ |+ ...++.|...|..+|+..+|++.|+...+
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 4444 3456666666666677777777666665533 33 34566677777777777777777765543
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=4.6e-12 Score=108.06 Aligned_cols=217 Identities=6% Similarity=-0.038 Sum_probs=173.3
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.......|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 446899999999999998765 5555566777788889999999999999998864 2233444444455556799999
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|...+++..+.. |+...+..+..++.+.|++++|...+++..... +.+...++.+..++...|++++|...++...+
T Consensus 595 Al~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998764 578899999999999999999999999998875 44677888999999999999999999999887
Q ss_pred cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhccccccchhhhh
Q 046446 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-SIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 165 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
... -+...+..+..++...|++++|...+++..+.. |+. .+.........+..+++.+.+.++
T Consensus 672 l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 672 GLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 532 367788899999999999999999999998754 543 344445555556666666665554
No 27
>PF13041 PPR_2: PPR repeat family
Probab=99.58 E-value=9.2e-15 Score=79.14 Aligned_cols=49 Identities=35% Similarity=0.709 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 046446 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182 (244)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 182 (244)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=2.4e-12 Score=101.22 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=96.0
Q ss_pred cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHH---HHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-H--hH
Q 046446 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT---YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN-V--IT 173 (244)
Q Consensus 100 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~--~~ 173 (244)
+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...+. .|+ . ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHH
Confidence 56666777777888888888888888887753 33321 122222223456777888888776654 233 3 45
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
..++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|+....
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6688889999999999999999655545578999999999999999999999999987543
No 29
>PF13041 PPR_2: PPR repeat family
Probab=99.57 E-value=1e-14 Score=78.99 Aligned_cols=49 Identities=49% Similarity=0.858 Sum_probs=27.4
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 77 (244)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=4.4e-12 Score=91.96 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=175.7
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhCCcH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD---TRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~ 82 (244)
|.-.++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+.+.+.+.++.--+. ......|.+-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 344678999999999999863 33444566788889999999999999999887621111 23445667778889999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc----HHHHHHHHHHHHccCChHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD----VVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
+.|+.+|..+.+.+ ..-..+...|+..|-...+|++|.++-+++.+.+-.+. ...|.-+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 35667788899999999999999999998877653332 23466777777778899999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
+....+.... .+..--.+.+.....|+++.|.+.++...+.+...-..+...|..+|.+.|+.++.+..+..+.+
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9988875322 33334455678888999999999999999988777778889999999999999888888776554
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.56 E-value=8.7e-12 Score=109.76 Aligned_cols=224 Identities=13% Similarity=0.054 Sum_probs=153.1
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC-ChhHHH------------H
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA-DTRTYT------------I 71 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~------------~ 71 (244)
.+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....+. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4667899999999999998863 3467788889999999999999999999988753321 111121 2
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH-------
Q 046446 72 FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH------- 144 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~------- 144 (244)
....+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+..
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 2445678899999999999998875 4567778888899999999999999999887653 223334433333
Q ss_pred -----------------------------------HHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 145 -----------------------------------GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 145 -----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
.+...|++++|.+.+++..+... -+...+..+...+.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 34456677777777777665422 134455666667777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
|...++++.+.. +.+...+..+...+.+.|+.++|+..++.+.
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 777777766542 1133334444445556667777766666543
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2.3e-12 Score=96.84 Aligned_cols=226 Identities=18% Similarity=0.282 Sum_probs=166.1
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh--hhchHH-HHHHHHHHHHHc-------------------CCC
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF--EIHQVE-RAFKLFDEMQRD-------------------GVA 63 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~-~a~~~~~~m~~~-------------------~~~ 63 (244)
....|.+..+.-+|+.|.+.|.+.+...-..|+..-+ ...+.. .-.+.|-.|... -.+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4567889999999999999998888776655554322 221111 111122222221 134
Q ss_pred CChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHH
Q 046446 64 ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143 (244)
Q Consensus 64 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (244)
-+..++.++|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|.+..+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 4678999999999999999999999999988877899999999998765433 267889999999999999999999
Q ss_pred HHHHccCChHH----HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----ChhhHH
Q 046446 144 HGLYNDGQMDK----AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK-VIELLHKMKE----KNVMP----DASIVS 210 (244)
Q Consensus 144 ~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~~~----~~~~~~ 210 (244)
+...+.|+++. |.+++.+|++-|+.|...+|..+|..+.+.++..+ +..++.++.. +.++| +...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56778889999999999999999999988887744 4555555443 23333 445666
Q ss_pred HHHHHHHhccccccchhhhhhhhhh
Q 046446 211 IVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.-+..|.+..+.+-|.++-...+..
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 7777888777777777766665543
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.8e-12 Score=95.85 Aligned_cols=228 Identities=12% Similarity=0.067 Sum_probs=185.1
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC--CChhHHHH----------
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA--ADTRTYTI---------- 71 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~---------- 71 (244)
.++....+.+++..-.+.+...|++-+...-+....+.....+++.|+.+|+++.+...- -|..+|..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 455556677778887778888777666655555556666778888888888888776210 13334433
Q ss_pred ---------------------HHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 72 ---------------------FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 72 ---------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
+.+-|+-.++.+.|...|++..+.+ +....+|+.+.+-|....+...|...++...+.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 3345666778999999999999887 567888999999999999999999999999988
Q ss_pred CccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 046446 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210 (244)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (244)
+ +.|-..|..|.++|.-.+.+.-|+-.|++..+.. +-|...|.+|..+|.+.++.++|+..|.+....|- .+...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHH
Confidence 6 6689999999999999999999999999988753 34789999999999999999999999999988763 3668889
Q ss_pred HHHHHHHhccccccchhhhhhhhhh
Q 046446 211 IVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.|.+.|.+.++.++|.+.|+.-...
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999988876553
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-12 Score=101.96 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=175.8
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhCCc
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCKNGY 81 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 81 (244)
..+-.+|+.-.|+..|++..+. .|+ ...|-.|...|...+.+++|+..|.+.... .|+ ...+..+...|...|.
T Consensus 226 ~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 226 CVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred hHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEecccc
Confidence 3456678888888888888876 454 446788888888888888888888877664 444 5667788888888999
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
.+.|+..|++..+.. +.-..+|+.|..++-..|+..+|.+.+.+..... +......+.|..+|...|.+++|.++|..
T Consensus 302 ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999988765 4557889999999999999999999999888764 33477888999999999999999999988
Q ss_pred HHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 162 MEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 162 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
..+- .|. ...++.|...|-++|++++|...|++... +.|+ ...|+.+...|...|+.+.|++.+....
T Consensus 380 al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 380 ALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 7763 343 45688888999999999999999998776 5676 3577888888888899888888887554
No 35
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=2.1e-12 Score=93.93 Aligned_cols=227 Identities=13% Similarity=0.058 Sum_probs=192.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
|-.+|.+.|-+.+|..-|+..... .|.+.||-.|-+.|.+..+.+.|+.++.+-.+. ++-|+....-+.+.+-..+.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 346889999999999999998887 788899999999999999999999999988876 44455555567788888999
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
.++|.++|+...+.. +.++....++...|.-.++++-|+.+++++.+.|+. +...|+.+.-.|.-.+++|-++.-|+.
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999998875 578888888889999999999999999999999965 888999999999999999999999998
Q ss_pred HHHcCCCCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 162 MEENAVAPN--VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 162 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
....--.|+ ...|..+-...+..|++..|.+.|+-....+- -+...++.|.-.-.+.|++++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 876544444 45677787888889999999999998887653 2567888888888899999999999886654
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2e-12 Score=101.65 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=171.3
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC-----------------------------
Q 046446 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG----------------------------- 61 (244)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------------------- 61 (244)
+..+|..+|..+..+ +.-+..+...+..+|...+++++|.++|+.+++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999986665 23344566778899999999999999999987641
Q ss_pred ----CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHH
Q 046446 62 ----VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV 137 (244)
Q Consensus 62 ----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 137 (244)
-+-.+.+|.++.++|+-.++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+...... +-+-.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYn 490 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYN 490 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhH
Confidence 12256788888899999999999999999998875 3478889988888899999999999999888653 23455
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (244)
.|.-+.-.|.+.++++.|+-.|+...+-+.. +.+....+...+.+.|+.++|++++++......+ |+..--.-+..+.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~ 568 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILF 568 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHH
Confidence 6667778899999999999999988874322 4555566667778889999999999998876533 4445555677788
Q ss_pred hccccccchhhhhhhhh
Q 046446 218 KNEISLNSLPSFTVHER 234 (244)
Q Consensus 218 ~~g~~~~a~~~~~~~~~ 234 (244)
..+++++|+..+++++.
T Consensus 569 ~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE 585 (638)
T ss_pred hhcchHHHHHHHHHHHH
Confidence 88999999999987764
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=7.5e-11 Score=87.84 Aligned_cols=221 Identities=14% Similarity=0.033 Sum_probs=153.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHH
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
.|+|..|+++..+-.+++ +.....|..-..+.-+.|+.+.+-.++.+..+.-..++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766664 2233345555566666677777777777766653334444455555566666666666666
Q ss_pred HHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCc------------------------------------
Q 046446 89 FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL------------------------------------ 132 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------ 132 (244)
+.++.+.+ +.++........+|.+.|++.....++..+.+.+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666655 45566666666666666666666666666654432
Q ss_pred -----cccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC------------------------------cHhHHHHH
Q 046446 133 -----VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP------------------------------NVITFGTL 177 (244)
Q Consensus 133 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p------------------------------~~~~~~~l 177 (244)
..++..-.+++.-+.+.|+.++|.++..+..+++..| ++..+.++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence 1223333556666777888888888887776654332 45668889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
...|.+.+.|.+|.+.|+...+. .|+..+|..+.+++.+.|+..+|.+.+++..
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999999976664 6999999999999999999999999888765
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=2.3e-11 Score=99.21 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=155.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 87 (244)
..+++++|...+++..+.. +-+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456899999999999874 4466778888888889999999999999999874 3356778889999999999999999
Q ss_pred HHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 046446 88 LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (244)
.+++..+.+ +.+...+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+..+...
T Consensus 394 ~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-- 470 (553)
T PRK12370 394 TINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-- 470 (553)
T ss_pred HHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--
Confidence 999998875 23333444455557778999999999999876532224556777888889999999999999887654
Q ss_pred CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 168 APN-VITFGTLIHGFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 168 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
.|+ ....+.+...+...| +.+...++.+.+. ...|....+ +-..|.-.|+.+.+... +.+.+.+
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 233 334455556667777 4778877776653 223332223 33344444555544444 5554443
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=6.8e-11 Score=92.69 Aligned_cols=219 Identities=12% Similarity=0.071 Sum_probs=164.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHhhhchHHHHHHHHHHHHHcCCCCChhHHH--HHHHHHHhCCcHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTL-FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT--IFIDGLCKNGYIVE 84 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 84 (244)
-.|+++.|.+.+....+. .+++..+..+ ..+..+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 369999999888876665 2233444333 44457889999999999999875 55654333 34678889999999
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccc------------------------------
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA------------------------------ 134 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------ 134 (244)
|.+.+++..+.. |-+......+...|.+.|++++|.+++..+.+.+..+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999876 6678899999999999999999998888877554221
Q ss_pred -----------cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 046446 135 -----------DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203 (244)
Q Consensus 135 -----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 203 (244)
++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+.. +
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 2233445567778889999999999888774 3444222 2334445689999999999888764 2
Q ss_pred CChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
-|...+..+.+.+.+.|++++|.+.|+......
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 355667889999999999999999998887653
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.49 E-value=1e-10 Score=98.97 Aligned_cols=228 Identities=11% Similarity=0.063 Sum_probs=142.0
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+...|++++|..+|++..+.. +.+...+..+...+...|++++|+..++++.+. .+.+.. +..+..++...|+.
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCH
Confidence 445677788888888888877652 334556667777777788888888888887776 233445 77777777888888
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhccc---------------------------------
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR--------------------------------- 129 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------------------- 129 (244)
++|+..++++.+.. |.+...+..+..++...+..++|+..++....
T Consensus 133 ~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 133 WDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 88888888887764 34555555566666666665555544443222
Q ss_pred -------------C-CccccHH-HHH----HHHHHHHccCChHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCChhH
Q 046446 130 -------------G-VLVADVV-TYS----IMIHGLYNDGQMDKAHDLFLDMEENAVA-PNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 130 -------------~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~ 189 (244)
. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+. .-..+..++...|++++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHH
Confidence 1 0011110 010 1122345567788888888887765422 222 12224567777888888
Q ss_pred HHHHHHHHHHCCCCC---ChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 190 VIELLHKMKEKNVMP---DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 190 a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
|...|+++....... .......+..++.+.|++++|++.++.+...
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 888888876543111 1234555666778888888888888777654
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=4.1e-11 Score=94.50 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=173.5
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhC-----CC-CCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHc-----CC--CCChh
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSK-----GI-KPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRD-----GV--AADTR 67 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~--~~~~~ 67 (244)
|...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... |- +--..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 456799999999999999997764 21 23333 3445777888899999999999998653 21 11245
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHh-----CC-Ccc-HHhHHHHHHHHHcCCCHHHHHHHHHhcccC---Ccc----
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRIL-----KC-ELD-IQAYSCLIDGLCKSGRLEIALELFHSLPRG---VLV---- 133 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~---- 133 (244)
+++.|..+|.+.|++++|...+++..+- +. .|. ...++.+...|...+++++|..+++...+. -..
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 6788888999999999999888876431 21 122 223677788899999999999988865321 011
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH----CC-
Q 046446 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN----AV--AP-NVITFGTLIHGFIRINEPSKVIELLHKMKE----KN- 201 (244)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~- 201 (244)
--..+++.|...|...|++++|.++++..... +- .+ ....++.+...|.+.+.+..|.++|.+... .|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 12568899999999999999999999987642 11 22 245678888999999999999999887542 22
Q ss_pred -CCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 202 -VMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 202 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
.+-...+|..|...|.+.|+++.|.++.+...+-.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 22235789999999999999999999998877543
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=4.8e-11 Score=90.70 Aligned_cols=209 Identities=15% Similarity=0.141 Sum_probs=169.5
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
...|++++|...|++.+...-.-....||.-+ .+-..|++++|++.|-++... +.-+..+...+.+.|-...+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34799999999999998763222233344333 355779999999999887664 3447788889999999999999999
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
+++.+.... ++.++.+.+.|...|-+.|+-..|+..+-.--+. ++-+..+...|...|....-++++..+|+...-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 999888764 5778999999999999999999999887665443 356788999999999999999999999998654
Q ss_pred CCCcHhHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 167 VAPNVITFGTLIHGF-IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 167 ~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
+.|+..-|..++..| .+.|++.+|+++|++...+ ++-|......|++.+...|..
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 679999999988655 4689999999999998765 677889999999988877754
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.45 E-value=2.8e-10 Score=96.34 Aligned_cols=228 Identities=11% Similarity=0.009 Sum_probs=169.0
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
+......|+.++|+++|....... +.+...+..+...+...|++++|..+|++..+. -+.+...+..+...+...|++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCH
Confidence 345677899999999999998732 456667899999999999999999999998886 234567778888999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHH--
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL-- 160 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-- 160 (244)
++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|.+.++
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998874 45666 8889999999999999999999998874 3345566666666666666665554443
Q ss_pred --------------------------------------------HHHHc-CCCCcHh-HHH----HHHHHHHhcCChhHH
Q 046446 161 --------------------------------------------DMEEN-AVAPNVI-TFG----TLIHGFIRINEPSKV 190 (244)
Q Consensus 161 --------------------------------------------~~~~~-~~~p~~~-~~~----~l~~~~~~~g~~~~a 190 (244)
.+.+. ...|+.. .+. ..+..+...|++++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 33321 1122211 111 112344577899999
Q ss_pred HHHHHHHHHCCCC-CChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 191 IELLHKMKEKNVM-PDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 191 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
...|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+....
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 9999999887532 332 22335779999999999999999876543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.1e-10 Score=87.20 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=134.2
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
+.+-|.-.+++++|...|++..+.+ +-....|+.+..-|...++...|.+-|++..+-. +.|-..|..|.++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcc
Confidence 3445666677788888888887764 3345567777777888888888888888777763 3477778888888888888
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
+.-|+-.|++..+.. |.|...|.+|..+|.+.++.++|.+.|.+....| ..+...+..|...|-+.++.++|...|..
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888888888777665 5677788888888888888888888888777665 33557777888888888888888777766
Q ss_pred HHH----cCCC-C-cHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 162 MEE----NAVA-P-NVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 162 ~~~----~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
..+ .|.. | .......|...+.+.+++++|........
T Consensus 492 ~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 492 YVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 543 2222 2 12222334556667777777766554443
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=6.9e-10 Score=80.83 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=104.8
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKG-IKPD--VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 78 (244)
|=+.|.+.|.+++|+++...+..+. .+-+ ......|..-|...|-+|.|+.+|..+.+.|.. -......|+..|-.
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~ 153 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHH
Confidence 3355666777777777777766641 1111 122334555566667777777777666654322 34456666666666
Q ss_pred CCcHHHHHHHHHHHHHhCCCccH----HhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHH
Q 046446 79 NGYIVESVELFRTLRILKCELDI----QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 154 (244)
..+|++|+++-+++.+.+-.+.. ..|--|...+....+.+.|...+++..+.+ +..+..--.+.+.....|++..
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHH
Confidence 66777776666666554432221 124444455555555555555555555442 1122233334455555555555
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555544333344445555555555555555555554443
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=6.9e-10 Score=83.55 Aligned_cols=218 Identities=12% Similarity=0.010 Sum_probs=152.0
Q ss_pred cCChhHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 9 NKEIEGALNLYSEMLSKG-IKPD--VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
.+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 355567777787777642 2222 3457777788889999999999999988863 33678899999999999999999
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
.+.|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998765 4467788888888999999999999999988763 44322222233345677899999999765533
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CC-ChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK---NV--MP-DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 166 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
. .|+. |.. .......|+...+ +.+..+.+. .+ .| ....|..+...+.+.|+.++|+..|+.....
T Consensus 195 ~-~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 L-DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred C-Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 2332 221 1222335555544 344444432 11 11 2357888999999999999999999876643
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=1.5e-11 Score=99.83 Aligned_cols=197 Identities=22% Similarity=0.207 Sum_probs=137.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC------------------------CCCChhHHHHH
Q 046446 17 NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG------------------------VAADTRTYTIF 72 (244)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------------------~~~~~~~~~~l 72 (244)
..+-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|+-+. -.|.+.||..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 35566778899999999999999999999999887 766665331 24677899999
Q ss_pred HHHHHhCCcHHHHHHHHHH-HH-------HhCC-----------------CccHHhHHHHHHHHHcCCCHHHHHHHHHhc
Q 046446 73 IDGLCKNGYIVESVELFRT-LR-------ILKC-----------------ELDIQAYSCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~-~~-------~~~~-----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
..+|...||... ++..++ +. ..|+ -|+.. ..+....-.|.++.+++++..+
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 999999998765 222222 21 1121 11111 1111122223333333333211
Q ss_pred ------------------------------ccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 046446 128 ------------------------------PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177 (244)
Q Consensus 128 ------------------------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 177 (244)
....-.|+..+|..++..-..+|+.+.|..++.+|.+.|++.+.+-|-.+
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 11111478889999999999999999999999999999999998877777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccc
Q 046446 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (244)
+-+ .++..-++.++.-|.+.|+.|+..|+..-+-.+.+.|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 665 77888888899999999999999999877776666554
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=9e-10 Score=86.80 Aligned_cols=217 Identities=11% Similarity=0.072 Sum_probs=115.8
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVV--IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+.|+++.|.+.+.+..+. .|+.. ..-.....+...|+++.|...++.+.+.. +-++.++..+...+.+.|+++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 33445555555555555443 23322 22223444445555555555555555543 113444555555555555555
Q ss_pred HHHHHHHHHHHhCCCccHHhHH-HHHHHH---HcCCC----HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYS-CLIDGL---CKSGR----LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
+|.+.+..+.+.+.. +...+. .-..++ ...+. .+.....++..... .+.+...+..+...+...|+.++|
T Consensus 205 ~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 205 ALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHH
Confidence 555555555555432 222111 001111 11111 11222222222111 112566777778888889999999
Q ss_pred HHHHHHHHHcCCCCcHhH--H-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhccccccchhhh
Q 046446 156 HDLFLDMEENAVAPNVIT--F-GTLIHGFIRINEPSKVIELLHKMKEKNVMPDA---SIVSIVVDLLAKNEISLNSLPSF 229 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 229 (244)
.+++++..+.. ||... + ..........++.+.+.+.++...+. .|+. .....+...+.+.|++++|.+.|
T Consensus 283 ~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 283 QEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 99999988753 33331 1 11112223457778888888877765 3443 45668889999999999999999
Q ss_pred hh
Q 046446 230 TV 231 (244)
Q Consensus 230 ~~ 231 (244)
+.
T Consensus 359 e~ 360 (409)
T TIGR00540 359 KN 360 (409)
T ss_pred HH
Confidence 83
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=2.7e-09 Score=74.29 Aligned_cols=197 Identities=13% Similarity=0.026 Sum_probs=121.1
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
...+...|.+.|+...|..-+++..+.. +-+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4445556666677777777777666652 2244566666666667777777777777666654 4556666666666677
Q ss_pred CCCHHHHHHHHHhcccCC-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHH
Q 046446 114 SGRLEIALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 192 (244)
.|++++|...|++....- +.....+|..+.-...+.|+.+.|...|+...+.... ...+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 777777777776665442 1222446666666666677777777777666654322 34455566666666677777766
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 193 LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.++.....+. ++.......|+.-...|+.+.+-++=..+.+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666665544 6666666666666666666555554444433
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.35 E-value=1.7e-09 Score=90.96 Aligned_cols=228 Identities=13% Similarity=0.043 Sum_probs=154.8
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+...|++++|+++|+++.+.. +-++..+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 45667788888888888887763 334556666677777788888888888877765 445555544444444455665
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcc-----------------------------------
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP----------------------------------- 128 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------------------------------- 128 (244)
+|++.++++.+.. |.+...+..+..+..+.|-...|+++.++-.
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6888888887765 4456666666666666665544444443221
Q ss_pred -------------c-CCccccH-HHH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 129 -------------R-GVLVADV-VTY----SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 129 -------------~-~~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
. .+..|.. ..| --.+-++...|++.++.+.++.+...+.+....+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 1 0001211 111 22345667788999999999999988766556677888999999999999
Q ss_pred HHHHHHHHHHCC-----CCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 190 VIELLHKMKEKN-----VMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 190 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
|+.+++.+.... ..++......|.-+|...+++++|..+++.+.+.
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 999999987643 1234444578889999999999999999998874
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=2.5e-09 Score=74.44 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=166.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
--.|.+.|++..|..-+++.+++. +-+..+|..+...|.+.|+.+.|.+-|++..... +-+..+.|.....+|..|++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCCh
Confidence 346889999999999999999984 3456688899999999999999999999998863 23677899999999999999
Q ss_pred HHHHHHHHHHHHhC-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 83 VESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 83 ~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
++|.+.|++..... +.-...+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.......|++-.|..+++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999988754 33346788899999999999999999999988875 33466788889999999999999999998
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 209 (244)
....+. ++..+.-..|+.-.+.|+-+.+.++=.++... -|...-|
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 887765 78888888888888899998888877776654 2444433
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=3.5e-09 Score=79.78 Aligned_cols=196 Identities=13% Similarity=-0.019 Sum_probs=139.5
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.+.+.|+++.|...|++..+.. +.+...|+.+...+...|++++|...|++..+.... +..++..+..++...|++++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 5678899999999999999874 446788999999999999999999999999986322 46778888999999999999
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|.+.+++..+.. |+..........+...++.++|...|.+..... .|+...+ .+. ....|+...+ +.+..+.+
T Consensus 151 A~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~ 223 (296)
T PRK11189 151 AQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKA 223 (296)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHh
Confidence 999999998865 333222222333456788999999997655332 2332222 222 2335555544 34444442
Q ss_pred cC-CC-----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 046446 165 NA-VA-----PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210 (244)
Q Consensus 165 ~~-~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (244)
.. .. .....|..+...+...|++++|...|++..+.++ |+..-+.
T Consensus 224 ~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~ 274 (296)
T PRK11189 224 GATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHR 274 (296)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHH
Confidence 11 11 1245788899999999999999999999998653 3544443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=4.1e-10 Score=82.27 Aligned_cols=194 Identities=13% Similarity=0.029 Sum_probs=162.4
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhh-HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVI-HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
|-..|.+-.++..|+.++.+-.+. .|-..| ..-+.+.+-..++.++|.++|+...+. .+.+......+...|.-.+
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~ 338 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDN 338 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCC
Confidence 446788999999999999988876 454444 456778888889999999999998876 3446777777888888899
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc--HHHHHHHHHHHHccCChHHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD--VVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
+++-|+.+|+++.+.|+ .++..|+.+.-+|.-.++++-++..|++....--.|+ ..+|..+.......||+..|.+.
T Consensus 339 ~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred ChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 99999999999999996 6899999999999999999999999988765433333 56789998999999999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
|+-...++.. +...++.+.-.-.+.|++++|..++......
T Consensus 418 frlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 418 FRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9988876433 6778898888888999999999999987664
No 54
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.25 E-value=1e-08 Score=86.37 Aligned_cols=205 Identities=12% Similarity=0.051 Sum_probs=152.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC-----CCCChhHHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-----VAADTRTYTIFIDGLC 77 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~ 77 (244)
+-++...|++.+|++.|+.+...|.+....+-..+..+|...+++++|..+|+++.... .+++......|.-++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34677788899999999999988766666788888899999999999999999886642 1223333567888888
Q ss_pred hCCcHHHHHHHHHHHHHhCC-----------Ccc---HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHH
Q 046446 78 KNGYIVESVELFRTLRILKC-----------ELD---IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (244)
..+++++|..+++.+.+... .|| ...+..++..+...|++.+|++.++++.... |-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999998886311 111 1224456777888899999999999987664 66788888889
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 046446 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI 211 (244)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (244)
..+...|.+.+|++.++...... +-+..+......++...|++.+|..+.+.+.+. .|+......
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 99999999999999997766542 224556667777778889999998888887765 344443333
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3.3e-09 Score=81.40 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=173.3
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
+.-.|+.-.|..-|+..+.....+ ...|-.+...|.+..+.++....|....+.+.. |+.+|..=...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 445788889999999998874322 233777778899999999999999998887543 778888888888888899999
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
..=|++.++.. +-+...|--+.-+.-+.+.+++++..|++.+.. ++-.+..|+....++...++++.|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998876 456677777777778899999999999999876 3556889999999999999999999999987763
Q ss_pred CCC-----CcHh--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 166 AVA-----PNVI--TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 166 ~~~-----p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
... .+.. +-..++..- -.+++..|..++.+..+.+.+ ....|..|...-.+.|+.++|+++|+...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 211 1221 122222221 348999999999998886533 45788899999999999999999998643
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=2.6e-08 Score=79.65 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=157.5
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHhC--
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDV-VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT-IFIDGLCKN-- 79 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~-- 79 (244)
..+...|++++|++.++.-... -+|. .........+.+.|+.++|..+|..+.+++ |+...|. .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4567889999999999776655 3454 455677788889999999999999999874 4544444 444444211
Q ss_pred ---CcHHHHHHHHHHHHH----------------------------------hCCCccHHhHHHHHHHHHcCCCHHHHHH
Q 046446 80 ---GYIVESVELFRTLRI----------------------------------LKCELDIQAYSCLIDGLCKSGRLEIALE 122 (244)
Q Consensus 80 ---~~~~~a~~~~~~~~~----------------------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 122 (244)
.+.+...++|+++.+ .|+ +.+|+.|-..|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHHH
Confidence 245666666666643 222 2234444444444333444444
Q ss_pred HHHhcc----cCC----------ccccHHHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcC
Q 046446 123 LFHSLP----RGV----------LVADVVTY--SIMIHGLYNDGQMDKAHDLFLDMEENAVAPN-VITFGTLIHGFIRIN 185 (244)
Q Consensus 123 ~~~~~~----~~~----------~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 185 (244)
++.... ..+ -+|+...| ..+...|...|++++|+++++...++ .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 444432 111 23444344 56677888999999999999999886 355 667777788999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhhc
Q 046446 186 EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237 (244)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 237 (244)
++.+|.+.++..+..... |...-+..+..+.++|+.++|...+....+.+.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999988754 778888899999999999999999998877664
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=8.5e-09 Score=78.80 Aligned_cols=227 Identities=16% Similarity=0.142 Sum_probs=162.5
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHH--HHHH----------------------------------hhhchHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTL--FIGL----------------------------------FEIHQVE 48 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~----------------------------------~~~~~~~ 48 (244)
.+.+.|+++.|+++++-+.+..-+.-...-+.| +..+ ...|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 467899999999999887765322211111111 1100 1246778
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcc
Q 046446 49 RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 49 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (244)
.|.+.|++.....-......|| +.-.+-..|+.++|+..|-.+..-- ..+..+.-.+...|-...+...|.+++-+..
T Consensus 508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 8888888887763332233333 3334556788888888887765432 3456667777888888888888888887766
Q ss_pred cCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 046446 129 RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208 (244)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 208 (244)
.. ++.|+.....|...|-+.|+...|.+..-+--.. ++-+..+...|...|....-+++++..|++..- ++|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 4567888899999999999999998876554332 556888999999999999999999999988654 6899999
Q ss_pred HHHHHHHH-Hhccccccchhhhhhhhhhhc
Q 046446 209 VSIVVDLL-AKNEISLNSLPSFTVHERQEE 237 (244)
Q Consensus 209 ~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~ 237 (244)
|..++-.| .+.|++++|.+.|+.+.++..
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 99877655 578999999999999887643
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=1.9e-08 Score=75.37 Aligned_cols=196 Identities=12% Similarity=0.144 Sum_probs=153.4
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCC-------hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPD-------VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 74 (244)
..++|.+.|++..+..++..+.+.|.-.+ ..+|+.++.-....+..+.-...|++..+. ..-++..-..++.
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~ 271 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAE 271 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHH
Confidence 35789999999999999999999876554 346777777777667777777788877665 4556777788889
Q ss_pred HHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHH
Q 046446 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 154 (244)
-+.+.|+.++|.++.++..+.+..|+. ...-.+.+-++.+.-.+..+.-.... +-++..+.+|...|.+++.|.+
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHH
Confidence 999999999999999999988776662 22334566677776666666544332 2345789999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 046446 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
|...|+...+ ..|+..+|+.+..++.+.|+..+|.++.++....-.+|+
T Consensus 347 A~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 347 ASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 9999997766 469999999999999999999999999988775444443
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.18 E-value=6.1e-08 Score=79.54 Aligned_cols=226 Identities=14% Similarity=0.066 Sum_probs=147.5
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
....|++++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-..... .+-|...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHH
Confidence 344599999999999998874 557778999999999999999998887555444 333667788888888888888888
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCc---------------------------------
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL--------------------------------- 132 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------- 132 (244)
.-.|.+..+.. |++...+---...|-+.|+...|...|.++.+..-
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888877765 45555555556666677777777666666554321
Q ss_pred -------cccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---------------------------CCC---------
Q 046446 133 -------VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA---------------------------VAP--------- 169 (244)
Q Consensus 133 -------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~p--------- 169 (244)
..+...++.++..+.+...++.+......+.... ..+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 1122233445555555555555555544443300 000
Q ss_pred ---------------------------cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 170 ---------------------------NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 170 ---------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
+...|.-+..++...|++.+|..++..+...-..-+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 12335556666677777777777777776653333456677777777777777
Q ss_pred ccchhhhhhhhh
Q 046446 223 LNSLPSFTVHER 234 (244)
Q Consensus 223 ~~a~~~~~~~~~ 234 (244)
++|++.|+....
T Consensus 466 e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 466 EEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHHHh
Confidence 777777765543
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=6.7e-08 Score=77.38 Aligned_cols=229 Identities=14% Similarity=0.064 Sum_probs=160.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh-h-----hchHHHHHHHHHHHHHcCCC---C--------C
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLF-E-----IHQVERAFKLFDEMQRDGVA---A--------D 65 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~-----~~~~~~a~~~~~~m~~~~~~---~--------~ 65 (244)
...+.+.|+.++|..+|..+++. .|+...|...+..+. - ..+.+....+|+++...-.. | +
T Consensus 45 A~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~ 122 (517)
T PF12569_consen 45 AELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE 122 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC
Confidence 35688899999999999999998 566666655444443 1 12456666677666443100 0 1
Q ss_pred --------------------hhHHHHHHHHHHhCCcHHHHHHHHHHHHHh----C----------CCccHH--hHHHHHH
Q 046446 66 --------------------TRTYTIFIDGLCKNGYIVESVELFRTLRIL----K----------CELDIQ--AYSCLID 109 (244)
Q Consensus 66 --------------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~ll~ 109 (244)
+.+|+.|-..|.......-..+++..+... + -+|+.. ++..+..
T Consensus 123 g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq 202 (517)
T PF12569_consen 123 GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ 202 (517)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH
Confidence 123444444444333444445555554322 1 134443 4466677
Q ss_pred HHHcCCCHHHHHHHHHhcccCCcccc-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChh
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVAD-VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 188 (244)
.|...|++++|+++.++..+.. |+ +..|..-...+-+.|++.+|.+.++........ |-..-+..+..+.+.|+.+
T Consensus 203 hyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHH
Confidence 8889999999999999999884 55 778889999999999999999999999986544 6666777788899999999
Q ss_pred HHHHHHHHHHHCCCCCChhh--------HHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 189 KVIELLHKMKEKNVMPDASI--------VSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+|.+++......+..|-... ......+|.+.|++..|+..|..+.+..
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999987765443322 2455678999999999988888776643
No 61
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=2.5e-09 Score=79.73 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=126.5
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY-TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (244)
.|.......+...+...++-+.++.-+++....+..++..++ ......+...|++++|++++..- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 455555544444444334445555444443333333222233 33345566788999998888642 45667777
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 046446 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY----NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 182 (244)
.+..|.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 8899999999999999999998764 33 33344444433 345789999999998764 5678888899999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc-ccchhhhhhhhhh
Q 046446 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS-LNSLPSFTVHERQ 235 (244)
Q Consensus 183 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 235 (244)
..|++++|.+++.+....+. -+..+...++-+....|+. +.+.+++..+...
T Consensus 213 ~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999876542 2566777777777777877 4456666666543
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.14 E-value=9.2e-10 Score=89.80 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=115.1
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC------------------------CCccHHhHHHH
Q 046446 52 KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK------------------------CELDIQAYSCL 107 (244)
Q Consensus 52 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~l 107 (244)
.++..+...|+.|+..||..+|.-|+..|+.+.|- +|.-|+-.. -.|...+|..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45677888999999999999999999999999998 777764221 24677888888
Q ss_pred HHHHHcCCCHHH---HHHHHHh----cccCCc-----------------cccHHH----------HHHHHHHHHc-----
Q 046446 108 IDGLCKSGRLEI---ALELFHS----LPRGVL-----------------VADVVT----------YSIMIHGLYN----- 148 (244)
Q Consensus 108 l~~~~~~~~~~~---a~~~~~~----~~~~~~-----------------~~~~~~----------~~~li~~~~~----- 148 (244)
..+|...|++.. +.+-+.. +...|+ -||..+ |..++.....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 888888888543 3332221 112221 122211 1112221110
Q ss_pred -cC-----------ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046446 149 -DG-----------QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 149 -~~-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
.+ ......++........-.|++.+|..++.+-...|+.+.|..++.+|.+.|++.+..-|..|+-+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 00 11112222222222112478888888888888889999999999999999988888877776655
Q ss_pred Hhccccccchhhhhhhhhhhc
Q 046446 217 AKNEISLNSLPSFTVHERQEE 237 (244)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~~~~ 237 (244)
.+...-+..++..|...+.
T Consensus 249 --~~~~q~~e~vlrgmqe~gv 267 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGV 267 (1088)
T ss_pred --CccchHHHHHHHHHHHhcC
Confidence 5555555666665555543
No 63
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=3.1e-07 Score=69.57 Aligned_cols=222 Identities=17% Similarity=0.113 Sum_probs=162.5
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhhc-hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPD-VVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
.+...++.++|+.+.+.+++. .|+ ..+|+.--.++...| ++++++..++++.+.... +..+|+.-...+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 455678889999999999886 344 445666656666666 689999999999887443 666777665556666653
Q ss_pred --HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc---CCh----H
Q 046446 83 --VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND---GQM----D 153 (244)
Q Consensus 83 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~----~ 153 (244)
++++.+++++.+.. +-|..+|+....++...|+++++++.++++.+.+ +-+...|+....++.+. |.. +
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHH
Confidence 67888998998877 5789999999999999999999999999999876 44777888776666554 222 4
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcc---------
Q 046446 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRI----NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE--------- 220 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 220 (244)
+...+...+.... +-|...|+.+...+... +...+|.+.+.+....+ ..+......|++.|+...
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 5666666666543 34778888888777763 34466888888877654 336778889999998643
Q ss_pred ---------ccccchhhhhhhh
Q 046446 221 ---------ISLNSLPSFTVHE 233 (244)
Q Consensus 221 ---------~~~~a~~~~~~~~ 233 (244)
..++|.++++.+.
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhccccccccHHHHHHHHHHHH
Confidence 2255777777773
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6e-08 Score=75.83 Aligned_cols=224 Identities=14% Similarity=0.059 Sum_probs=149.5
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
-|...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=.++.+. .+-.+.+|-++.--|.-.|..++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 4556778888888888877764 566666766677777777777776666666665 34456777777777777777777
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcC----------------------------------CCHHHHHHHHHhcccC
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKS----------------------------------GRLEIALELFHSLPRG 130 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------------------------~~~~~a~~~~~~~~~~ 130 (244)
|.+.|.+....+ +.-...|-.+...|+-. ++++.|.++|.+....
T Consensus 331 ARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 331 ARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 777777665433 12233444444444444 4444444444444433
Q ss_pred CccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc----C--CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 046446 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN----A--VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204 (244)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 204 (244)
. |-|+...+-+.-..-..+.+.+|..+|+..... + ...-..+++.+..+|.+.+.+++|+..+++..... +-
T Consensus 410 ~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k 487 (611)
T KOG1173|consen 410 A-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PK 487 (611)
T ss_pred C-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CC
Confidence 2 335556666665556667788888888776521 0 11134567888888888899999998888887763 34
Q ss_pred ChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 205 DASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 205 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
+..++..+.-.|...|+++.|++.|....
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 78888888888888899988888887554
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=2.3e-07 Score=72.05 Aligned_cols=225 Identities=12% Similarity=0.013 Sum_probs=130.7
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh----hchHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhC
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE----IHQVERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCKN 79 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~ 79 (244)
.+...|++++|.+++++..+.. +.+...+.. ...+.. .+..+.+.+.+.. ..+..|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 4566788888888888877752 233333332 212222 3444444444443 1112232 33444566677888
Q ss_pred CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCc-cccH--HHHHHHHHHHHccCChHHHH
Q 046446 80 GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL-VADV--VTYSIMIHGLYNDGQMDKAH 156 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~ 156 (244)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999998888875 45667778888888888999999988888766431 1222 34556778888889999999
Q ss_pred HHHHHHHHcCC-CCcHhHH-H--HHHHHHHhcCChhHHHHH--HHHHHHCCC--CCChhhHHHHHHHHHhccccccchhh
Q 046446 157 DLFLDMEENAV-APNVITF-G--TLIHGFIRINEPSKVIEL--LHKMKEKNV--MPDASIVSIVVDLLAKNEISLNSLPS 228 (244)
Q Consensus 157 ~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (244)
.+++....... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99988754322 1122111 1 223333344443333333 211111111 11112222566677778888888888
Q ss_pred hhhhhh
Q 046446 229 FTVHER 234 (244)
Q Consensus 229 ~~~~~~ 234 (244)
++.+..
T Consensus 287 L~~l~~ 292 (355)
T cd05804 287 LAALKG 292 (355)
T ss_pred HHHHHH
Confidence 877655
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.3e-07 Score=75.10 Aligned_cols=204 Identities=13% Similarity=0.014 Sum_probs=150.1
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHc-----CC-CCChh-HHHHHHHHHHhCCcHHHHHHHHHHHHHh-----C--
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRD-----GV-AADTR-TYTIFIDGLCKNGYIVESVELFRTLRIL-----K-- 96 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-- 96 (244)
..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++..- |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999988765 21 23333 3445777888999999999999998652 2
Q ss_pred CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC-----C-cccc-HHHHHHHHHHHHccCChHHHHHHHHHHHHc---C
Q 046446 97 CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG-----V-LVAD-VVTYSIMIHGLYNDGQMDKAHDLFLDMEEN---A 166 (244)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~ 166 (244)
.+.-..+++.|..+|.+.|++++|...+++..+- + ..|. ...++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2233556788888999999999888877764321 1 1222 234677788899999999999999875431 1
Q ss_pred CCC----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC--CC-ChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 167 VAP----NVITFGTLIHGFIRINEPSKVIELLHKMKEK----NV--MP-DASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 167 ~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
+.+ -..+++.|...|...|++++|.++++..... +. .+ ....++.+...|.+.+...+|.+.|.....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 122 2467899999999999999999999987743 11 22 245778899999999999999888876543
No 67
>PF12854 PPR_1: PPR repeat
Probab=99.05 E-value=4e-10 Score=55.07 Aligned_cols=27 Identities=52% Similarity=0.992 Sum_probs=10.0
Q ss_pred ccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 046446 99 LDIQAYSCLIDGLCKSGRLEIALELFH 125 (244)
Q Consensus 99 ~~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (244)
||..+|++||.+|++.|++++|.++|+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333333333333333333333333
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.04 E-value=2.3e-08 Score=82.58 Aligned_cols=225 Identities=12% Similarity=0.081 Sum_probs=164.5
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
++-..++++.|.+.|....+. -|+-. .|-.+.......++..+|..++++.... ...++..+..+...+.+...+.
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhc
Confidence 344457888888999888876 35543 3444444444557788888888888765 3346677777777888888888
Q ss_pred HHHHHHHHHHHhC-CCccHHhHHHHHHHHHc------------CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 84 ESVELFRTLRILK-CELDIQAYSCLIDGLCK------------SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 84 ~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
.|.+-|+...+.- ..+|..+.-+|.+.|.. .+..++|+.+|.+..+.. +-|...-|-+.-.++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 8888777665432 23566666666665542 234678888888887765 557777888888888999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhccccccchhhh
Q 046446 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNEISLNSLPSF 229 (244)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (244)
++.+|..+|....+... -...+|-.+..+|..+|++..|.++|+...+. ...-+..+...|.+++.+.|.+.+|.+.+
T Consensus 661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999887644 25567888899999999999999999876654 44557788888999999999988887777
Q ss_pred hhhhh
Q 046446 230 TVHER 234 (244)
Q Consensus 230 ~~~~~ 234 (244)
....+
T Consensus 740 l~a~~ 744 (1018)
T KOG2002|consen 740 LKARH 744 (1018)
T ss_pred HHHHH
Confidence 65544
No 69
>PF12854 PPR_1: PPR repeat
Probab=99.04 E-value=4e-10 Score=55.06 Aligned_cols=32 Identities=44% Similarity=0.815 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 61 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=1.2e-07 Score=69.16 Aligned_cols=185 Identities=11% Similarity=-0.021 Sum_probs=111.6
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHH---hH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-A-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ---AY 104 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 104 (244)
....+..+...+...|+++.|...|+++...... | ...++..+..++...|++++|...++++.+... .+.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence 4556666777778888888888888888765211 1 124567777888888888888888888876542 1222 34
Q ss_pred HHHHHHHHcC--------CCHHHHHHHHHhcccCCccccH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHH
Q 046446 105 SCLIDGLCKS--------GRLEIALELFHSLPRGVLVADV-VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175 (244)
Q Consensus 105 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 175 (244)
..+..++... |++++|.+.|+.+.... |+. ..+..+..... . ..... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~------~~~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----L------RNRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----H------HHHHH--------HHHH
Confidence 4445555543 66777888887776552 332 22221111100 0 00000 0012
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 176 TLIHGFIRINEPSKVIELLHKMKEKNV--MPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.+...+.+.|++.+|...++...+... +.....+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344567777888888888877776521 123456677777888888888888777766553
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=1.4e-07 Score=68.79 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=121.1
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCC-h---hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPD-V---VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT--RTYTIFIDGL 76 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~ 76 (244)
...+...|+++.|...|+++... .|+ . ..+..+..++...|++++|...++++.+....... .++..+..++
T Consensus 40 g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 40 AKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 45678899999999999999886 333 2 46677888899999999999999999876322111 2455566666
Q ss_pred HhC--------CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 77 CKN--------GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 77 ~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
.+. |+.+.|.+.++.+.+.. +-+...+..+..... ..... ......+...+.+
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~~--------------~~~~~~~a~~~~~ 178 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNRL--------------AGKELYVARFYLK 178 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHHH--------------HHHHHHHHHHHHH
Confidence 654 78899999999998764 233333322221111 00000 0112245567888
Q ss_pred cCChHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 149 DGQMDKAHDLFLDMEENAV--APNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
.|++++|...++...+... +.....+..+..++...|++++|...++.+...
T Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 179 RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999998888876421 123567788888888899999999888887654
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.01 E-value=2.9e-07 Score=75.72 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046446 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214 (244)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (244)
+...|.-+..++...|++++|+.+|..+......-+...|-.+.++|...|..++|.+.|+...... +-+...-..|-.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Las 491 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLAS 491 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHH
Confidence 4556778889999999999999999999987666678889999999999999999999999998763 224455567888
Q ss_pred HHHhccccccchhhhhhhh
Q 046446 215 LLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~ 233 (244)
.+.+.|+.++|.+.++.+.
T Consensus 492 l~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhcCCHHHHHHHHhccc
Confidence 8999999999999988754
No 73
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=3.5e-08 Score=79.27 Aligned_cols=205 Identities=13% Similarity=0.078 Sum_probs=152.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
+|.+|...|+..+|..+..+..+. +|++..|..+.+......-++.|.++.+..-.+ .-..+.....+.++
T Consensus 430 vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchh
Confidence 356777778778887777777764 678888888888777777778887777665332 11112222233678
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
++++.+.|+.-.+.+ +....+|-.+.-+..+.++++.|.+.|....... +-+...||.+-.+|.+.++..+|...+.+
T Consensus 501 fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 501 FSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 888888888776655 5677888888888889999999999999988763 34578999999999999999999999999
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN-VMPDASIVSIVVDLLAK 218 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 218 (244)
..+.. .-+...|...+......|.+++|.+.+.++.... ..-|..+...++....+
T Consensus 579 AlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 579 ALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99877 4466677777777889999999999999887531 12255555555555544
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.00 E-value=4.5e-07 Score=64.06 Aligned_cols=162 Identities=10% Similarity=0.078 Sum_probs=117.4
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCH
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 117 (244)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3557778888887555432221 11 01223567778888888877766 67888999999999999999
Q ss_pred HHHHHHHHhcccCCccccHHHHHHHHHHH-HccCC--hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHH
Q 046446 118 EIALELFHSLPRGVLVADVVTYSIMIHGL-YNDGQ--MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELL 194 (244)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 194 (244)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999888775 44677788877764 66676 48999999998886533 6777888888888999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHH
Q 046446 195 HKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
+++.+.. .|+..-+. +|++.
T Consensus 168 ~~aL~l~-~~~~~r~~-~i~~i 187 (198)
T PRK10370 168 QKVLDLN-SPRVNRTQ-LVESI 187 (198)
T ss_pred HHHHhhC-CCCccHHH-HHHHH
Confidence 9988764 44544443 33543
No 75
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.00 E-value=5.6e-07 Score=74.74 Aligned_cols=228 Identities=14% Similarity=0.061 Sum_probs=138.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIK--PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR--TYTIFIDGLC 77 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~ 77 (244)
|.+.|.-.|++..+..+...+...... .-...|..+.++|...|+++.|..+|.+..+. .|+.. .+.-|...+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHH
Confidence 345566678888888888777765211 12345777778888888888888888665554 34433 3445677788
Q ss_pred hCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC----CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH
Q 046446 78 KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG----RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (244)
+.|+.+.+...|+...+.. +.+..+...|...|+..+ ..+.|..++.+..... +.|...|-.+...+...+-+
T Consensus 354 ~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~- 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW- 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-
Confidence 8888888888888777654 455666666666666554 3456666666655543 34566666666665544333
Q ss_pred HHHHHHHHH----HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCh------hhHHHHHHHHHhcc
Q 046446 154 KAHDLFLDM----EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK---NVMPDA------SIVSIVVDLLAKNE 220 (244)
Q Consensus 154 ~a~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g 220 (244)
.++.+|... ...+..+.+...|.+.......|+++.|...|...... .-.++. .+--.+...+...+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 335555433 34444566667777777777777777777777766543 112222 12223445555556
Q ss_pred ccccchhhhhhhhh
Q 046446 221 ISLNSLPSFTVHER 234 (244)
Q Consensus 221 ~~~~a~~~~~~~~~ 234 (244)
+.+.|.+.|..+.+
T Consensus 511 ~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILK 524 (1018)
T ss_pred hhhHHHHHHHHHHH
Confidence 66666666665544
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.8e-07 Score=69.09 Aligned_cols=227 Identities=14% Similarity=0.070 Sum_probs=128.1
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
...+...|+.+.|+..|+..... .|... ........+.+.|+.+....+...+.... .-+...|..-+.......+
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhh
Confidence 34556666666666666666554 22211 11111122234444444444444443321 0122222222223333445
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
++.|+.+.++.++.+ +.+...+-.-...+...|+.++|.-.|+...... +-+...|..|+..|...|.+.+|..+-+.
T Consensus 316 ~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 555555555555443 2344444444455556666666666666655442 33566666677766666666666554433
Q ss_pred HHHc-----------C-----------------------CCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 046446 162 MEEN-----------A-----------------------VAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206 (244)
Q Consensus 162 ~~~~-----------~-----------------------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 206 (244)
.... | +.|+ ....+.+...|...|..+.+..+++..... .||.
T Consensus 394 ~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~ 471 (564)
T KOG1174|consen 394 TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDV 471 (564)
T ss_pred HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--cccc
Confidence 2110 1 1222 234566677888899999999999987764 6899
Q ss_pred hhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 207 SIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
...+.|.+.+...+.+++|++.|....+.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999888766543
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=1.6e-08 Score=75.41 Aligned_cols=219 Identities=10% Similarity=0.063 Sum_probs=145.2
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
+.+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++... -.|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 44566789999887665 333221223445567778888899887654 334333 3677777766666555545566
Q ss_pred HHHHHHHHHHHhCCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 84 ESVELFRTLRILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
.+..-+++....... .+..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666655554433322 23333333445677789999999888654 25677788899999999999999999999
Q ss_pred HHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhhc
Q 046446 163 EENAVAPNVITFGTLIHGFIR----INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237 (244)
Q Consensus 163 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 237 (244)
.+. . +..+...+..++.. .+.+.+|..+|+++.+. +.++..+.+.+.-+....|++++|.+.++.......
T Consensus 158 ~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 158 QQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred Hhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 874 2 33445555555443 34689999999998765 678899999999999999999999999887665443
No 78
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.98 E-value=6.5e-07 Score=71.65 Aligned_cols=220 Identities=13% Similarity=0.060 Sum_probs=129.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 87 (244)
...++++|..+|.+.... .|+..+|.--+..-.-.++.++|++++++..+. ++--.-.|-.+.+.+-+.++.+.|.+
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444432 334444433333333344444555544444443 22122334444444444455555544
Q ss_pred HHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-
Q 046446 88 LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA- 166 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~- 166 (244)
.|..-.+. +|..+..|-.|...=-+.|.+-.|..++++..-.+ +-+...|-..|+.=.+.|+.+.|..+.....+.-
T Consensus 707 aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 707 AYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44433322 34455566666666667777777888887776655 4567788888888888888888888776655421
Q ss_pred ----------------------------CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046446 167 ----------------------------VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218 (244)
Q Consensus 167 ----------------------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (244)
...|++..-.+...|....++++|.++|.+..+.+. -+-.+|..+...+.+
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELR 863 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHH
Confidence 122556666667777777888888888888887642 245677888888888
Q ss_pred ccccccchhhhhhhh
Q 046446 219 NEISLNSLPSFTVHE 233 (244)
Q Consensus 219 ~g~~~~a~~~~~~~~ 233 (244)
.|.-++-.++++...
T Consensus 864 hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCE 878 (913)
T ss_pred hCCHHHHHHHHHHHh
Confidence 887666666665543
No 79
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.8e-07 Score=72.23 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=149.1
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..|....+.++-...|......+ +-++.+|..-.....-.+++++|..=|++....... +...|-.+.-+..+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHH
Confidence 46788889999999999988875 456777877777777788999999999999886322 5667777777788899999
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-----ccccHHHH--HHHHHHHHccCChHHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-----LVADVVTY--SIMIHGLYNDGQMDKAH 156 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~--~~li~~~~~~~~~~~a~ 156 (244)
+++..|++.++. +|..+..|+.....+...+++++|.+.|+...... +..+..++ -.++. +.=.+++..|.
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~ 523 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHH
Confidence 999999999875 57778999999999999999999999999876542 11111111 11111 11248999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
.+++...+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 524 ~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 524 NLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999998885433 456789999999999999999999998654
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6e-07 Score=70.43 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=142.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
-.|+..+|.+.|...... .|+ ...|-.....|+-.|.-|+|+..|...-+. ++-..-.+--+.--|.+.+..+.|.
T Consensus 324 ~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 345556666666555443 222 224555555565566666666666555443 1112222333444566777888888
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----C--ccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG----V--LVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
+.|.+..... |.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 8888877654 567777777777777788999999999876521 1 11245578899999999999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 046446 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219 (244)
Q Consensus 161 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (244)
...... +-+..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+...
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 988763 44889999999999999999999999998765 578887777777765543
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.94 E-value=5.4e-07 Score=63.67 Aligned_cols=155 Identities=10% Similarity=0.150 Sum_probs=119.7
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
-.|...|+++.+....+.+.. |. ..+...++.+++...+++..+.. +.|...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 467888888887555433221 11 01223667788888888877763 458889999999999999999
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHH-HHcCCC--HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDG-LCKSGR--LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
+|...|++..+.. +.+...+..+..+ +...|+ .++|..++++..+.+ +-+..++..+...+...|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999876 5678888888886 467777 599999999999885 4478889999999999999999999999
Q ss_pred HHHHcCCCCcHhHH
Q 046446 161 DMEENAVAPNVITF 174 (244)
Q Consensus 161 ~~~~~~~~p~~~~~ 174 (244)
.+.+.. +|+..-+
T Consensus 169 ~aL~l~-~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN-SPRVNRT 181 (198)
T ss_pred HHHhhC-CCCccHH
Confidence 998763 3444333
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=8.4e-07 Score=69.77 Aligned_cols=218 Identities=13% Similarity=0.068 Sum_probs=150.5
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.+.+.|+..+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+... -|....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 3567888999999998888774 44677888888888888888888888887777522 134445455544544443333
Q ss_pred HHHHHH-----------------------------------------HHH-HhCCCccHHhHHHHHHHHHcCCCHHHHHH
Q 046446 85 SVELFR-----------------------------------------TLR-ILKCELDIQAYSCLIDGLCKSGRLEIALE 122 (244)
Q Consensus 85 a~~~~~-----------------------------------------~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 122 (244)
|...+. ++. ..+..+|..+...|.-.|--.|++++|.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 333332 222 23333677777788888888899999999
Q ss_pred HHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHH--
Q 046446 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKE-- 199 (244)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 199 (244)
.|+...... +-|...||.|..++....+..+|...|++.++. .|+ +.....|.-+|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999988775 557888999999999999999999999998874 454 44556666778888999999888766542
Q ss_pred -C------CCCCChhhHHHHHHHHHhccccccchh
Q 046446 200 -K------NVMPDASIVSIVVDLLAKNEISLNSLP 227 (244)
Q Consensus 200 -~------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (244)
. +..++...|..|=.++.-.++.+.+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2 122234566666656665666554433
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=2.9e-07 Score=61.63 Aligned_cols=93 Identities=11% Similarity=-0.038 Sum_probs=50.6
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 115 (244)
.....+...|++++|...|+...... +.+...+..+..++.+.|++++|...|++....+ +.+..++..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444555555555555555555442 2245555555555555555555555555555543 345555555555555555
Q ss_pred CHHHHHHHHHhcccC
Q 046446 116 RLEIALELFHSLPRG 130 (244)
Q Consensus 116 ~~~~a~~~~~~~~~~ 130 (244)
++++|...|+.....
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555544
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=2.8e-06 Score=65.99 Aligned_cols=192 Identities=10% Similarity=0.009 Sum_probs=128.5
Q ss_pred hhhhcCChhHHHHHHHHHHhCC-CCCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 046446 5 GYCKNKEIEGALNLYSEMLSKG-IKPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK---- 78 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 78 (244)
.+...|+.+.+...+....+.. ..++.. ........+...|++++|.+.+++..+.. +.+...+.. ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF 92 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc
Confidence 4455677788777777765542 122221 12222334567799999999999988762 334444442 222222
Q ss_pred CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHH
Q 046446 79 NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
.+....+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+..++...|++++|..+
T Consensus 93 ~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 93 SGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555555555441 11222334455566778899999999999999998875 44577888899999999999999999
Q ss_pred HHHHHHcCC-CCcH--hHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 159 FLDMEENAV-APNV--ITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 159 ~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
++....... .|+. ..|..+...+...|++++|..++++....
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 998876432 2232 34557788899999999999999998643
No 85
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.4e-06 Score=59.44 Aligned_cols=188 Identities=15% Similarity=0.161 Sum_probs=142.4
Q ss_pred cCChhHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 9 NKEIEGALNLYSEMLSK---G-IKPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++.++ ++-+..+-..-...+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45678889999888753 4 455655 4666777778889999999999999887 3334444333333455678999
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
+|+++++.+.+.+ |.|.+++-.-+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999887 678888888888888888888888887777665 35689999999999999999999999999988
Q ss_pred HcCCCC-cHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 046446 164 ENAVAP-NVITFGTLIHGFIRIN---EPSKVIELLHKMKEKN 201 (244)
Q Consensus 164 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 201 (244)
-. .| ++..|..+...+...| +.+.+.+.|.+..+..
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 64 34 4444555655555444 4567888888877754
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.2e-06 Score=62.49 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc
Q 046446 70 TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 70 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (244)
..+-..+...|+-+....+........ +.+....+.++....+.|++..|...+++..... ++|..+|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334444445555555555554433221 2344444445555555555555555555555443 44555555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhh
Q 046446 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229 (244)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (244)
|++++|..-|.+..+... -+....+.+.-.+.-.|+.+.|..++......+. -|...-..+..+....|++.+|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555555554321 1334445555555555555555555555554432 14444445555555555555554443
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=4.4e-07 Score=60.76 Aligned_cols=95 Identities=12% Similarity=-0.078 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666677777777777777776655 4566777777777777777777777777776654 4456677777777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 046446 149 DGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 149 ~~~~~~a~~~~~~~~~~ 165 (244)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776653
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=3.6e-07 Score=65.06 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=125.8
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
|... ..+-..+...|+-+....+....... .+-|.......++...+.|++..|...+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 55566677778877777776664433 23355666778888899999999999999988766 788999999999
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
+|.+.|++++|..-|.+..+.. +-+....|.+.-.+.-.|+++.|..++......+.. |...-..+..+....|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 9999999999999888877653 335677888888888889999999999888775433 66667777788888899999
Q ss_pred HHHHHHHHH
Q 046446 190 VIELLHKMK 198 (244)
Q Consensus 190 a~~~~~~~~ 198 (244)
|..+...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 988776544
No 89
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.86 E-value=4.8e-06 Score=66.86 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=145.6
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
+...|++..|..++.+..+.. +.+...|-..+..-....+++.|..+|.+... ..|+..+|.--+..---.+..++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 445688888888888887763 34666788888888888888999888877766 467777777666666667888889
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
.+++++..+. ++.-...|..+...+-+.++.+.|...|..-.+. ++..+..|-.+...=-+.|++-.|..+++.....
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9988887765 3445667888888888888888888888765554 2445667888877777888999999999988766
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 166 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
+.. +...|...|+.-.+.|..+.|..++.+..+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 543 778888889999999999999888877654
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=2.2e-06 Score=72.40 Aligned_cols=206 Identities=12% Similarity=0.073 Sum_probs=133.5
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC----------------
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA---------------- 64 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---------------- 64 (244)
|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++.+.+..+ .+... +..
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHHHHHh
Confidence 567778889999999999877766 45443 333333345555555554444 22222 111
Q ss_pred ---ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHH
Q 046446 65 ---DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141 (244)
Q Consensus 65 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (244)
+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|+.. ++++|..++.+....- .+..-|+.
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~--i~~kq~~~ 187 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF--IKKKQYVG 187 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--HhhhcchH
Confidence 22566777788888889999999999888887 67888888888888888 8888888887766541 12222222
Q ss_pred HHHHH-----HccCChHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046446 142 MIHGL-----YNDGQMDKAHDLFLDMEEN-AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215 (244)
Q Consensus 142 li~~~-----~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (244)
+...+ ....+++.-..+.+.+... |..--..++.-+...|...++|+++..+++.+.+..-. |.....-++.+
T Consensus 188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~ 266 (906)
T PRK14720 188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRF 266 (906)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHH
Confidence 22211 1223444444455544432 33334455666677888888999999999999887533 66777778888
Q ss_pred HH
Q 046446 216 LA 217 (244)
Q Consensus 216 ~~ 217 (244)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 87
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=3.5e-07 Score=73.77 Aligned_cols=213 Identities=11% Similarity=0.032 Sum_probs=166.9
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+...|-...|..+|+++. .|..+|.+|...|+-.+|..+..+..+ -+||+..|..+.+......-++
T Consensus 406 ell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 45666777788888876654 566788888899999999888887777 4788999999888887777788
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
.|.++.+..-.. +-..+.....+.++++++.+.|+.-...+ +.-..+|-.+..+..+.+++..|...|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 888888764322 22223333345789999999999876654 4467789999999999999999999999887
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhhc
Q 046446 164 ENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237 (244)
Q Consensus 164 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 237 (244)
... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...+..-+-.-.+.|.+++|++.+..+....+
T Consensus 547 tL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 547 TLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 642 2356789999999999999999999999999887 33556666677788899999999999988876554
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=2.9e-06 Score=73.25 Aligned_cols=200 Identities=11% Similarity=0.047 Sum_probs=118.3
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC-----ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHh
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA-----DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA 103 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (244)
-+...|-..|....+.++.+.|.++.++.... +.+ -...|.++++.-..-|.-+...++|+++.+.. -....
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 34455666677777777777777777776553 211 12345555555555556666677777766542 23445
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHH
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-PNVITFGTLIHGFI 182 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 182 (244)
|..|...|.+.+.+++|-++++.|.+.- .-....|...+..+.++++-+.|.+++.+..+.-.+ -........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 6667777777777777777777766542 135566777777777777777777777665543111 01222333344444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 183 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
+.|+.+++..+|+....... -....|+..++.-.+.|+...+..+|++..
T Consensus 1612 k~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 56666666666666665432 244566666666666666666666666544
No 93
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.1e-05 Score=57.86 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=105.5
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
...-...|...|++++|++..... -+......=...+.+..+.+-|.+.++.|.+.. +..|.+.|.+++.+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVK 181 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHH
Confidence 334455678888999998887762 133333333556677788899999999998863 56677767666654
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccccc
Q 046446 149 ----DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224 (244)
Q Consensus 149 ----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (244)
.+...+|.-+|++|.++ ..|++.+.+-...++...|++++|..+++....+... ++.+...++-+-...|...+
T Consensus 182 la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 45688899999998864 5788888888888889999999999999998877533 56666666666555666544
Q ss_pred c
Q 046446 225 S 225 (244)
Q Consensus 225 a 225 (244)
+
T Consensus 260 ~ 260 (299)
T KOG3081|consen 260 V 260 (299)
T ss_pred H
Confidence 3
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=2.1e-06 Score=71.46 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=100.3
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (244)
+.++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|+..+++..... +-+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 445677777777777888888888888888775 344 4556677778888888888888888887765 456667777
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
+..++...|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7778888888888888888887643 334777788888888888888888888877653
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=3.2e-06 Score=72.96 Aligned_cols=214 Identities=14% Similarity=0.055 Sum_probs=166.3
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK-GIKP---DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 78 (244)
|....+.++.+.|.+++++.+.. ++.- -...|.++++.-..-|.-+...++|+++.+. .. .-..|..|...|.+
T Consensus 1465 Maf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~~~V~~~L~~iy~k 1542 (1710)
T KOG1070|consen 1465 MAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-AYTVHLKLLGIYEK 1542 (1710)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-hHHHHHHHHHHHHH
Confidence 45667889999999999999875 2111 2346777777766778889999999999886 21 23567889999999
Q ss_pred CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc---HHHHHHHHHHHHccCChHHH
Q 046446 79 NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD---VVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 155 (244)
.+..++|.++++.|.+.= ......|...+..+.+..+-+.|..++.+..+. -|. .....-.+..-.+.|+.+.+
T Consensus 1543 ~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred hhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhh
Confidence 999999999999998752 367889999999999999999999999987765 233 34445555666789999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcccc
Q 046446 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA--SIVSIVVDLLAKNEIS 222 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 222 (244)
..+|+.......+ -...|+..+..-.++|+.+.+..+|++....++.|-. ..|..-+..=.+.|+-
T Consensus 1620 RtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 9999998875332 5678999999999999999999999999999887753 3444444433444554
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=5.3e-06 Score=69.19 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=121.8
Q ss_pred CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHH
Q 046446 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141 (244)
Q Consensus 62 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...++..+..|.....+.|..++|..+++...+.. |-+......+...+.+.+++++|+...++..... +-+....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34568889999999999999999999999999875 5677788889999999999999999999999885 445777788
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (244)
+..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .|....|+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 8889999999999999999999843 2357888888999999999999999999988652 33444443
No 97
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.78 E-value=8.4e-07 Score=58.81 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
.+...+...|++++|.+.++...+.+ +.+...+..+...+...|++++|..+++.....+ +.+...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 33344444444444444444444433 2344444444444444444444444444443332 223344444444444444
Q ss_pred ChHHHHHHHHHHHH
Q 046446 151 QMDKAHDLFLDMEE 164 (244)
Q Consensus 151 ~~~~a~~~~~~~~~ 164 (244)
++++|...|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.74 E-value=1.1e-06 Score=58.24 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=93.5
Q ss_pred HHHHHHhCCCCC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC
Q 046446 18 LYSEMLSKGIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96 (244)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 96 (244)
.++..... .| +......+...+...|++++|...|+.....+ +.+...+..+...+...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555555 34 34556677788889999999999999998864 4477888899999999999999999999988776
Q ss_pred CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHH
Q 046446 97 CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY 139 (244)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (244)
+.+...+..+..++...|++++|...|+...+.. |+...+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchH
Confidence 5678888888999999999999999999988763 554443
No 99
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=8.7e-07 Score=68.60 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=58.7
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 115 (244)
.++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555442 22 22334444444555555555555554432 234444444444455555
Q ss_pred CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
+++.|+.+.+++.... +-+..+|..|..+|...|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555555442 222345555555555555555555555443
No 100
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=3.7e-05 Score=59.73 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=135.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHH
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
.|++..|.++|++-.+- .|+...|++.|+.=.+-+.++.|..+|++..- +.|+..+|---.+.=-+.|....+.++
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 57788888888887776 78888888888888888888888888887764 346666665544444444444444444
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 046446 89 FRTLR--------------------------------------------------------------------------- 93 (244)
Q Consensus 89 ~~~~~--------------------------------------------------------------------------- 93 (244)
|+...
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 33321
Q ss_pred ------HhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHH--HHHHHH----HH----HHccCChHHHHH
Q 046446 94 ------ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV--TYSIMI----HG----LYNDGQMDKAHD 157 (244)
Q Consensus 94 ------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li----~~----~~~~~~~~~a~~ 157 (244)
+.+ +.|-.+|--.++.-...|+.+...++|++....- +|-.. .|.-.| +. =....+.+.+.+
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 111 3455666666666667777777777777776542 33111 111111 11 112344555555
Q ss_pred HHHHHHH------------------------------------cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 158 LFLDMEE------------------------------------NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 158 ~~~~~~~------------------------------------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
+++...+ -|..|-..+|...|..-.+.++++.+..+++...+.+
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5543332 1344556666666666666777777777777777654
Q ss_pred CCCChhhHHHHHHHHHhccccccchhhhhhhhhhhccc
Q 046446 202 VMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVD 239 (244)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (244)
. -+..+|......=...|+.+.|..+|+....+..++
T Consensus 468 P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 468 P-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred h-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 2 255666666666666778888888887776665443
No 101
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=2.1e-05 Score=59.72 Aligned_cols=194 Identities=11% Similarity=-0.033 Sum_probs=138.7
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHH
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG-YIVESVELFRTLRILKCELDIQAYSCLIDGLC 112 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 112 (244)
+..+-..+...+..++|+.++.++.+.... +..+|+.-..++...| ++++++..++++.+.+ +.+..+|+.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334444555667889999999999886322 4456766666666777 6799999999999876 567777887766666
Q ss_pred cCCCH--HHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc---CCh
Q 046446 113 KSGRL--EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI---NEP 187 (244)
Q Consensus 113 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~ 187 (244)
+.|.. ++++.+++.+.+.+ +-+..+|+...-++.+.|+++++++.++.+.+.+.. |...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66663 67888898888775 457899999999999999999999999999987655 677787776665544 223
Q ss_pred ----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcc----ccccchhhhhhh
Q 046446 188 ----SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE----ISLNSLPSFTVH 232 (244)
Q Consensus 188 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~ 232 (244)
++......++..... -|...|+.+...+...+ ...++.+++...
T Consensus 196 ~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 196 EAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred cccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 356666666666542 36677777777776633 334566666554
No 102
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.68 E-value=8.5e-07 Score=69.04 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=92.7
Q ss_pred CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh--CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHH
Q 046446 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL--KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138 (244)
Q Consensus 61 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (244)
+.+.++.....+++.+....+.+.+..++-+.+.. ....-..|..++++.|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45556777777888877777788888887777654 2223344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 184 (244)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877666666667766666665554
No 103
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=2.1e-06 Score=66.58 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
+......|++.+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++..... +-+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34445566666667777888888888877654 44 33346677777777777777777776543 335566666667
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 145 GLYNDGQMDKAHDLFLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
.+...++++.|+.+.+++.+. .|+ -.+|..|..+|...|+++.|+..++.+-
T Consensus 243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777778888888888777764 343 4477778888888888888877777654
No 104
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.61 E-value=8.7e-08 Score=47.27 Aligned_cols=33 Identities=42% Similarity=0.613 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD 65 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 65 (244)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.2e-05 Score=57.67 Aligned_cols=172 Identities=11% Similarity=0.067 Sum_probs=120.8
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC
Q 046446 18 LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC 97 (244)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 97 (244)
+.+.+.......+......-...|...+++++|++..+.. ...+... .=...+.+..+.+.|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAA--LNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 3444444433333333444456688899999999988762 2223333 3345566778999999999999874
Q ss_pred CccHHhHHHHHHHHH----cCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhH
Q 046446 98 ELDIQAYSCLIDGLC----KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT 173 (244)
Q Consensus 98 ~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 173 (244)
.+..|.+-|..++. ..+...+|+-+|++|.+. .+|+..+.+....++...|++++|..++++....... ++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 35566665666554 445789999999999885 3789999999999999999999999999999876544 6677
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHC
Q 046446 174 FGTLIHGFIRINEPS-KVIELLHKMKEK 200 (244)
Q Consensus 174 ~~~l~~~~~~~g~~~-~a~~~~~~~~~~ 200 (244)
...++-+-...|... -..+.+.++...
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 776666666666654 445566666654
No 106
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.61 E-value=9.2e-08 Score=47.18 Aligned_cols=33 Identities=36% Similarity=0.764 Sum_probs=16.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 170 (244)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 107
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.61 E-value=9.7e-07 Score=54.70 Aligned_cols=80 Identities=14% Similarity=0.274 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhCC--------cHHHHHHHHHHHHHhCCCccHHhH
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRDGV-AADTRTYTIFIDGLCKNG--------YIVESVELFRTLRILKCELDIQAY 104 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 104 (244)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666677888888888888888888 888888888888877643 345678888888888888999999
Q ss_pred HHHHHHHHc
Q 046446 105 SCLIDGLCK 113 (244)
Q Consensus 105 ~~ll~~~~~ 113 (244)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887764
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=1.3e-05 Score=53.75 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=55.0
Q ss_pred hchHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc--HHhHHHHHHHHHcCCCHH
Q 046446 44 IHQVERAFKLFDEMQRDGVAAD---TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD--IQAYSCLIDGLCKSGRLE 118 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~ 118 (244)
.++...+...++.+...... + ....-.+...+...|++++|...|+........++ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555555555554211 1 11222233445555666666666665555431111 122333455555556666
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
+|+..++..... ......+.....+|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666655553332 22333444555555556666666555543
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=7.1e-05 Score=53.51 Aligned_cols=185 Identities=12% Similarity=0.024 Sum_probs=138.1
Q ss_pred hchHHHHHHHHHHHHHc---C-CCCChh-HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHH
Q 046446 44 IHQVERAFKLFDEMQRD---G-VAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 118 (244)
..+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35778888888887653 4 555554 46677778888999999999999988763 444444333344456789999
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
+|.++++.+.+.+ +.|..++---+...-..|+--+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999886 667778877777777788888999988887775 56799999999999999999999999999998
Q ss_pred HCCCCCChhhHHHHHHHHHhcccc---ccchhhhhhh
Q 046446 199 EKNVMPDASIVSIVVDLLAKNEIS---LNSLPSFTVH 232 (244)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~ 232 (244)
-.. +.++..+..+.+.+.-.|.. +-+.++|...
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 753 23555566677665544433 4445555443
No 110
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.59 E-value=2.1e-06 Score=66.92 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=96.3
Q ss_pred CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHh
Q 046446 26 GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD--GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA 103 (244)
Q Consensus 26 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (244)
+.+.+......+++.+....+.+.+..++.+.+.. ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777788888888888888888888888765 2222345566889999999999999999988888898899999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (244)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888877666556666666666555544
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.3e-05 Score=60.89 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=76.5
Q ss_pred HHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc-HHHHHHHHHHHHccCChH
Q 046446 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD-VVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 153 (244)
.+...|..+.|+..++.+...- |-|...+......+...++.++|.+.++.+... .|+ ...+-.+.+++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3445667777777777766542 455666666667777777777777777777665 344 555566667777777777
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
+|..+++..... .+-|+..|..|.++|...|+..++..-..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 777777766554 2336667777777777766666655544443
No 112
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.57 E-value=1.4e-07 Score=46.17 Aligned_cols=32 Identities=28% Similarity=0.650 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 046446 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204 (244)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 204 (244)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.55 E-value=1.7e-05 Score=53.24 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc---HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc--HHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELD---IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD--VVTYSIM 142 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 142 (244)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777654 223 23333455677778888888888888777642222 2244456
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
...+...|++++|+..++..... ......+......+.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777788888888887664332 223445556667777888888888777653
No 114
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.55 E-value=1.7e-07 Score=45.94 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 046446 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169 (244)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 169 (244)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777766665
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.55 E-value=0.00011 Score=55.07 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=163.7
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCCh--------------hhH--HHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDV--------------VIH--NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT 68 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 68 (244)
.+.+.|.++.|..=|+..+++ .|+. ..| ...+..+...|+...|+.....+.+- .+.|...
T Consensus 115 vllK~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l 191 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASL 191 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHH
Confidence 467899999999999999987 3421 111 22345566678999999999999886 3458888
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHH----HH--
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS----IM-- 142 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l-- 142 (244)
+..-..+|...|++..|+.=++...+.. ..++.++--+-..+...|+.+.++...++..+.+ ||...+. .+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHH
Confidence 8888899999999999998888877765 4566666677788888999999999999988763 5543221 11
Q ss_pred -------HHHHHccCChHHHHHHHHHHHHcCCCCcH---hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHH
Q 046446 143 -------IHGLYNDGQMDKAHDLFLDMEENAVAPNV---ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSI 211 (244)
Q Consensus 143 -------i~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 211 (244)
+......++|.++.+-.+...+....... ..+..+-.++...|++.+|++...+..+- .|+ ..++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 22344567888888888777665433222 23445556777789999999999988764 454 778888
Q ss_pred HHHHHHhccccccchhhhhhhhh
Q 046446 212 VVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
-..+|.-...++.|+.-|+...+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHh
Confidence 88899988999999988876543
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=1.2e-05 Score=63.47 Aligned_cols=187 Identities=12% Similarity=0.064 Sum_probs=140.5
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 120 (244)
+.+.|++.+|.-.|+...+.... +...|..|.......++-..|+..+++..+.. +-|..+...|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45788999999999988887433 78899999999999999999999999999876 56788888888888888887888
Q ss_pred HHHHHhcccC------------------------------------------CccccHHHHHHHHHHHHccCChHHHHHH
Q 046446 121 LELFHSLPRG------------------------------------------VLVADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 121 ~~~~~~~~~~------------------------------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
++.++.-... +..+|......|.-.|--.|++++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 8777654211 1124555566666667777888888888
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhccccccchhhhhhh
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
|+..+... +-|...||.|...++...+.++|+..|.+.++. +|+ .++..-|.-+|...|.+.+|...|-..
T Consensus 453 f~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 453 FEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 88877643 226677888888888888888888888888775 444 234445666777788887776665443
No 117
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.54 E-value=2.4e-06 Score=52.98 Aligned_cols=80 Identities=13% Similarity=0.325 Sum_probs=58.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCChhhHH
Q 046446 140 SIMIHGLYNDGQMDKAHDLFLDMEENAV-APNVITFGTLIHGFIRIN--------EPSKVIELLHKMKEKNVMPDASIVS 210 (244)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (244)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555556788888888888888887 778888888877766542 2345677888888888888888888
Q ss_pred HHHHHHHhc
Q 046446 211 IVVDLLAKN 219 (244)
Q Consensus 211 ~l~~~~~~~ 219 (244)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 888877653
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=6e-05 Score=58.63 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=72.5
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHH
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALE 122 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 122 (244)
..|+++.|+..+..+... .+-|+..+......+.+.++.++|.+.++.+.... +......-.+..++.+.|++.+|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHH
Confidence 345555566655555544 22233334444555566666666666666665543 2224445555566666666666666
Q ss_pred HHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 123 LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
+++...... +-|...|..|.++|...|+..++..-.- ..+...|++++|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 666555443 3455566666666666665555544332 2233455566665555555543
No 119
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=0.00011 Score=57.32 Aligned_cols=208 Identities=13% Similarity=0.044 Sum_probs=155.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 87 (244)
..+++.+|..+|++.+.-. ..+...|--.+.+=.+...+..|..+|++.... ++--...|.--+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3577889999999998865 456667777788888889999999999998775 22233455555556667899999999
Q ss_pred HHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc-C
Q 046446 88 LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-A 166 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~ 166 (244)
+|++-.+ ..|+...|++.|+.=.+-...+.|..++++..-. .|++.+|--....=.++|+...+..+|....+. |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 9998775 4799999999999999999999999999998876 489999999999889999999999999887653 1
Q ss_pred C-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcccc
Q 046446 167 V-APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD--ASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 167 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 222 (244)
- ..+...|.+....-.++..++.|..+|+-..+.- +-+ ...|......=.+-|+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~ 296 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDK 296 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcch
Confidence 0 1123334444444446778889999998887752 222 34455444444445554
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.8e-05 Score=57.88 Aligned_cols=226 Identities=12% Similarity=0.113 Sum_probs=151.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHH-HHHHHHhCC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI-FIDGLCKNG 80 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~ 80 (244)
++..+.+..+++.|++++....++. +.+..-...+..+|....++..|-+.|+++-.. .|...-|.. -...+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 3455678888999999988877762 236667788888888999999999999998775 455544432 245666788
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHH--HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLID--GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
.+.+|+++...|... ++...-..-+. ..-..+++..+..++++....| +..+.+.......+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 999999999888653 22211111111 2235677888888888877543 444455555556689999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------CChh--------hHHHHHHH--
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM-------------PDAS--------IVSIVVDL-- 215 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l~~~-- 215 (244)
|+...+-+--.....|+..+..| +.|+...|++...++.++|++ ||.. .-+.++.+
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 99988754444566787766555 568999999999999887643 1211 12233333
Q ss_pred -----HHhccccccchhhhhhhhhhhc
Q 046446 216 -----LAKNEISLNSLPSFTVHERQEE 237 (244)
Q Consensus 216 -----~~~~g~~~~a~~~~~~~~~~~~ 237 (244)
+.+.|+.+.|.+.+-.|+-+.+
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 3456777777777777665443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=2.6e-05 Score=66.27 Aligned_cols=202 Identities=7% Similarity=-0.031 Sum_probs=137.3
Q ss_pred CCCC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhCCcHHHHHHH---------------
Q 046446 26 GIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT-RTYTIFIDGLCKNGYIVESVEL--------------- 88 (244)
Q Consensus 26 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~--------------- 88 (244)
...| +...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++..++.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 3444 4557889999999999999999999976664 3433 3444444456666655554444
Q ss_pred ---HHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 89 ---FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
...+... .-+..++-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... +.++|.+++......
T Consensus 103 e~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 2222221 2234677788899999999999999999999887 66899999999999999 999999999887654
Q ss_pred CCCCcHhHHHHHHH---HHH--hcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 166 AVAPNVITFGTLIH---GFI--RINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 166 ~~~p~~~~~~~l~~---~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
-+ +..-|+.+.. -++ ...+++.-..+.+.+... |..--..++.-+-..|.+.+++++++.+++.+..-
T Consensus 179 ~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 179 FI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 11 1111222211 111 223444555555555544 44445567777778888899999999999877654
No 122
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00028 Score=54.15 Aligned_cols=208 Identities=16% Similarity=0.110 Sum_probs=129.4
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
+.+.|+.+....+...+.... +.+...|-.-.......++++.|+.+-++..+... -+...+-.-...+...+++++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHH
Confidence 345566666666666555431 22333344444444455666666666666555421 1333444444555666666766
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHH------------------------------------Hhccc
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELF------------------------------------HSLPR 129 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------------------------------------~~~~~ 129 (244)
.-.|+...... |-+...|..|+.+|...|.+.+|..+- +.-..
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 66666665543 345666777777776666666655433 22222
Q ss_pred CCcccc-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 046446 130 GVLVAD-VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI 208 (244)
Q Consensus 130 ~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 208 (244)
. .|+ ....+.+...+...|..+++..+++.... ..||....+.+...+...+.+.++.+.|......+ |+...
T Consensus 433 ~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~~~~ 506 (564)
T KOG1174|consen 433 I--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PKSKR 506 (564)
T ss_pred c--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--ccchH
Confidence 2 333 34557778888999999999999998776 36899999999999999999999999999887754 54433
Q ss_pred HHHHHHHHHhcccc
Q 046446 209 VSIVVDLLAKNEIS 222 (244)
Q Consensus 209 ~~~l~~~~~~~g~~ 222 (244)
-..=++-+.+..+.
T Consensus 507 sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 507 TLRGLRLLEKSDDE 520 (564)
T ss_pred HHHHHHHHHhccCC
Confidence 33334445554444
No 123
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=0.00014 Score=59.59 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 183 (244)
|......+.+.+..++|...+.+..... +.....|......+...|.+.+|.+.|........ -++.+...+..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 4455566667777777777776666543 34455666666777788999999999988776432 245677888889999
Q ss_pred cCChhHHHH--HHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 184 INEPSKVIE--LLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 184 ~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.|+...+.. ++.++.+.+. .+...|..+...+.+.|+.+.|.+.|....+-
T Consensus 731 ~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 998888888 8999988763 47889999999999999999999999866543
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.00021 Score=62.63 Aligned_cols=230 Identities=10% Similarity=-0.061 Sum_probs=139.7
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCC-CChhHHHHHHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDV----VIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVA-ADTRTYTIFIDG 75 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~ 75 (244)
.+...|+++.|...+++....-...+. ...+.+...+...|++++|...+.+.... |.. +...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 355789999999999987763111111 23455556667789999999999887653 111 112345566777
Q ss_pred HHhCCcHHHHHHHHHHHHHh----CCC--c-cHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----CccccHHHHHHHHH
Q 046446 76 LCKNGYIVESVELFRTLRIL----KCE--L-DIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VLVADVVTYSIMIH 144 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 144 (244)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876542 211 1 2233445566677789999999888876432 11112344555667
Q ss_pred HHHccCChHHHHHHHHHHHHcC--CCCcHh--HH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---hhhHHHHHHH
Q 046446 145 GLYNDGQMDKAHDLFLDMEENA--VAPNVI--TF--GTLIHGFIRINEPSKVIELLHKMKEKNVMPD---ASIVSIVVDL 215 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 215 (244)
.+...|++++|.+.+....... ...... .. ...+..+...|+.+.|..++........... ......+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999888775421 111110 00 0112334456778888777666443211111 1113456667
Q ss_pred HHhccccccchhhhhhhhh
Q 046446 216 LAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~ 234 (244)
+...|+.++|...++....
T Consensus 701 ~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 701 QILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777888787777776544
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.0001 Score=64.53 Aligned_cols=231 Identities=12% Similarity=0.034 Sum_probs=147.9
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCC---CCC--hhhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCC--C-ChhHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGI---KPD--VVIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVA--A-DTRTYTI 71 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ 71 (244)
..+...|+++.|...+++.....- .+. ...+..+...+...|+++.|...+++.... +.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 345678999999999988765310 111 234455666778889999999998876553 221 1 2233445
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHh----CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----CccccHHHH--HH
Q 046446 72 FIDGLCKNGYIVESVELFRTLRIL----KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VLVADVVTY--SI 141 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~--~~ 141 (244)
+...+...|++++|...+++.... +.......+..+...+...|++++|...+...... +........ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 566677789999999998887543 11112344555667788899999999988876432 111111011 11
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-hhhHHHHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPN---VITFGTLIHGFIRINEPSKVIELLHKMKEK----NVMPD-ASIVSIVV 213 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 213 (244)
.+..+...|+.+.|.+.+........... ...+..+..++...|++++|...+.+.... |..++ ..+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 22445568899999998876543211111 111345667788889999999999887653 33222 34566777
Q ss_pred HHHHhccccccchhhhhhhhh
Q 046446 214 DLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.++.+.|+.++|...+.....
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 788899999888888776654
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.40 E-value=0.00036 Score=55.31 Aligned_cols=218 Identities=11% Similarity=0.106 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhh---chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHH
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI---HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 89 (244)
+++..++++....-...+..+|..+...--.. ...+.....++++...-..--+-+|...++.-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555565555432223333443333221111 236677777777766533323456778888888888899999999
Q ss_pred HHHHHhCCCc-cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 046446 90 RTLRILKCEL-DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168 (244)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (244)
.+..+.+..+ ++.+.++++..||. ++.+-|.++|+.-.+.- .-++.--+..+..+.+.++-..+..+|+.....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999988766 77788899988875 78899999999754431 223445567788888999999999999999987666
Q ss_pred Cc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhccccccchhhhhhh
Q 046446 169 PN--VITFGTLIHGFIRINEPSKVIELLHKMKEK---NVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 169 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
|+ ...|..++..=..-|+...+.++-+++... ...+....-..+++-|.-.+...-...-++.+
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 55 478999999989999999999988887653 12334445566777777666665444444443
No 127
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.39 E-value=0.00024 Score=57.27 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=139.8
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
...|+-++|.+....-...+ .-+.++|..+.-.+....++++|++.|......+. -|...+.-+.-.-++.++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHH
Confidence 34567777777776666543 34566777777777777888888888888877532 25667777766677778888888
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-ccccHHHHHHHH------HHHHccCChHHHHHHH
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMI------HGLYNDGQMDKAHDLF 159 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~ 159 (244)
....+..+.. +.....|..+..++.-.|++..|..+++...+.. ..|+...+.... ......|..++|.+.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777777654 4566778888888888899999999998887654 246666654433 3345577778887777
Q ss_pred HHHHHcCCCCcHhHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHH
Q 046446 160 LDMEENAVAPNVITF-GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSI-VVDLLA 217 (244)
Q Consensus 160 ~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 217 (244)
..-... +. |...+ .+-...+.+.+++++|..++..+...+ ||..-|.. +..++.
T Consensus 209 ~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 209 LDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALG 264 (700)
T ss_pred HhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHH
Confidence 654432 22 33333 344567778899999999999998875 66555544 444443
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.00061 Score=57.00 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=62.0
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG--LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
...+++..|......+.+. -|+. .|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...+..++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4456666677666666554 2332 22233333 34556667777666665555444 66666666666777777777
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 118 (244)
|..+|++.... .|+......+..+|.+.+++.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 77777766654 355555555666666655544
No 129
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.37 E-value=0.00052 Score=55.58 Aligned_cols=197 Identities=10% Similarity=0.100 Sum_probs=121.6
Q ss_pred ChhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhch----------------------HHHHHHHHHHHH
Q 046446 1 ILINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ----------------------VERAFKLFDEMQ 58 (244)
Q Consensus 1 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------------------~~~a~~~~~~m~ 58 (244)
+|.+-|.+.|.+++|.++|++..+. ..+..-|..+.++|++-.. ++-.+..|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 3667889999999999999998876 4455556666666654211 122223333332
Q ss_pred HcC-----------CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc------cHHhHHHHHHHHHcCCCHHHHH
Q 046446 59 RDG-----------VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL------DIQAYSCLIDGLCKSGRLEIAL 121 (244)
Q Consensus 59 ~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~ 121 (244)
..+ -+.+...|..-.. ...|+..+...+|.+..+. +.| -...|..+...|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 221 1112222322222 2345667777777777653 122 2345788888999999999999
Q ss_pred HHHHhcccCCcccc---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC----------C-------cHhHHHHHHHHH
Q 046446 122 ELFHSLPRGVLVAD---VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA----------P-------NVITFGTLIHGF 181 (244)
Q Consensus 122 ~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~ 181 (244)
.+|++..+...+.- ..+|......=.++.+++.|.++.+......-. | +...|...+..-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99999887653322 456666667777788888898888766532111 1 234455555555
Q ss_pred HhcCChhHHHHHHHHHHHCCC
Q 046446 182 IRINEPSKVIELLHKMKEKNV 202 (244)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~~ 202 (244)
-..|-++....+|+.+.+..+
T Consensus 488 Es~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhc
Confidence 566777888888887776544
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=1.2e-05 Score=49.08 Aligned_cols=17 Identities=6% Similarity=0.481 Sum_probs=6.7
Q ss_pred HhhhchHHHHHHHHHHH
Q 046446 41 LFEIHQVERAFKLFDEM 57 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m 57 (244)
+...|++++|...+++.
T Consensus 10 ~~~~~~~~~A~~~~~~~ 26 (100)
T cd00189 10 YYKLGDYDEALEYYEKA 26 (100)
T ss_pred HHHHhcHHHHHHHHHHH
Confidence 33334444444444333
No 131
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=8.6e-06 Score=60.91 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=105.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHH-----HHHHHhCCcHHHHHHHHHHHHHhCCCccH-HhHHHHHHH
Q 046446 37 LFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF-----IDGLCKNGYIVESVELFRTLRILKCELDI-QAYSCLIDG 110 (244)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~ 110 (244)
++-.|.+.++..+|..+.+++.- ..|-......+ ..-........-|.+.|+-.-+++..-|+ .--.++..+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 44456677778887777665431 12211111111 11111222344555555555444322221 112334444
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHH-HHHHHHhcCChhH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT-LIHGFIRINEPSK 189 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~ 189 (244)
+.-..++++++..+..+...-...|... -.+.++++..|++.+|+++|-.+....++ |..+|.+ +.++|.+++.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 4455567777777777665432223333 34567777888888888888666554444 4555544 4567778888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhhc
Q 046446 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEE 237 (244)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 237 (244)
|+.++-.+...+ -.......+..-|.+.+.+.-|.+.|+.+++.+.
T Consensus 447 AW~~~lk~~t~~--e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMMLKTNTPS--ERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 877765443221 1223444556677777887777777777765543
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=2.4e-06 Score=51.58 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=6.9
Q ss_pred HHHHHhCCcHHHHHHHHH
Q 046446 73 IDGLCKNGYIVESVELFR 90 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~ 90 (244)
..++.+.|++++|..+++
T Consensus 32 a~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 333333333333333333
No 133
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.34 E-value=1.6e-05 Score=48.49 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=47.8
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc
Q 046446 70 TIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 70 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (244)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555555566666555555432 2233445555555555555666665555554432 22334555555555555
Q ss_pred CChHHHHHHHHHHH
Q 046446 150 GQMDKAHDLFLDME 163 (244)
Q Consensus 150 ~~~~~a~~~~~~~~ 163 (244)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555544
No 134
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.32 E-value=0.0002 Score=57.71 Aligned_cols=225 Identities=13% Similarity=0.072 Sum_probs=160.6
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
|...+++...++..+.+.+. .+-...+.....-.+...|+-++|......-.+..+. +.+.|..+.-.+-...++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHH
Confidence 34567777777777777763 3344455555555566678899998888777665433 777888888888888899999
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
++.|......+ +.|...|.-+.-.-+..|+++..........+.. +-....|..+..++.-.|+...|..++++..+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876 5778888877777788888988888888777663 334667888888888899999999999998865
Q ss_pred C-CCCcHhHHHHHHH------HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 166 A-VAPNVITFGTLIH------GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 166 ~-~~p~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
. -.|+...|..... .....|.++.|.+.+..-... +.-....-..-...+.+.++.++|..++..+...
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4 3566666554332 334567777777766554332 2212223335556778899999999998877654
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=4.3e-05 Score=49.18 Aligned_cols=98 Identities=10% Similarity=-0.006 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC--CccHHhHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVA--ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQAYSCLI 108 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll 108 (244)
++..+...+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|.+.++.+..... +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555666666666666666553211 1123444556666666666666666666654321 11234455555
Q ss_pred HHHHcCCCHHHHHHHHHhcccC
Q 046446 109 DGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.++...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 136
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=3e-05 Score=56.79 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
..+.|.++.|.+-|+...+.+--.....||..+ +..+.|+++.|++...++.+.|
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 345566666666666655543333445555443 3334466666666665554443
No 137
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0004 Score=55.53 Aligned_cols=122 Identities=19% Similarity=0.166 Sum_probs=78.3
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
++-+...|++++|.+....+...+ +-+...+..=+-+..+.+++++|+.+.+.-... ..+..-+..=.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 345667788899998888888875 445555666666788888888888554432211 11111111223344567888
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88888887221 2233355555677788889999999998886654
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=5.5e-05 Score=48.69 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCC--CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC--ccccHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV--LVADVVTYSIMI 143 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li 143 (244)
++..+...+.+.|++++|.+.|+.+.+... +.....+..+..++...|++++|...|+.+.... .+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666666666666666655421 1113345556666666666666666666655432 011134455566
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 046446 144 HGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
.++...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.30 E-value=1.2e-06 Score=41.73 Aligned_cols=29 Identities=38% Similarity=0.642 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcC
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDG 61 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 61 (244)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 140
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.29 E-value=0.00017 Score=54.09 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=97.7
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-NGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
.+|..+++..-+.+..+.|..+|++.++.+ ..+..+|......-.. .++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999999998542 3345556555555333 56777799999988875 46778888999999
Q ss_pred HHcCCCHHHHHHHHHhcccCCcccc---HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVAD---VVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
+...++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+..+.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998876 2222 248888888888899999999988888764
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.27 E-value=1.5e-06 Score=41.39 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=14.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 142
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.26 E-value=0.0007 Score=49.58 Aligned_cols=190 Identities=8% Similarity=0.043 Sum_probs=104.5
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHH
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT---YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 112 (244)
.....+...|++++|.+.|+++...-..+ ... .-.+..++.+.+++++|...+++..+....-...-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 33444556788888888888887753222 222 23456777788888888888888877642222223333333332
Q ss_pred cCCCHHHHHHHHHhc---ccCCcccc-----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 046446 113 KSGRLEIALELFHSL---PRGVLVAD-----VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184 (244)
Q Consensus 113 ~~~~~~~a~~~~~~~---~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 184 (244)
.... ....|... ......++ ...+..++.-|-...-..+|...+..+... .-..- -.+...|.+.
T Consensus 116 ~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e-~~ia~~Y~~~ 188 (243)
T PRK10866 116 NMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYE-LSVAEYYTKR 188 (243)
T ss_pred hhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHc
Confidence 1000 00011110 00000000 123334444444444455555544444321 11111 2455668888
Q ss_pred CChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 185 NEPSKVIELLHKMKEK--NVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 185 g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
|.+..|..-++.+.+. +.+........++.+|.+.|..++|.++...+.
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8898888888888875 444456677788889999998888877766553
No 143
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.26 E-value=5.3e-05 Score=53.07 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC
Q 046446 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (244)
-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 45677777777777777777777777777766554
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.25 E-value=6.4e-05 Score=58.30 Aligned_cols=88 Identities=15% Similarity=-0.009 Sum_probs=49.8
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 120 (244)
+...|+++.|+..|++..+... -+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445566666666666655422 244555555556666666666666666665544 33455555555566666666666
Q ss_pred HHHHHhcccC
Q 046446 121 LELFHSLPRG 130 (244)
Q Consensus 121 ~~~~~~~~~~ 130 (244)
...|++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 6666655544
No 145
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00014 Score=54.63 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=124.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH-Hh----hhchHHHHHHHHHHHHHcCCCCChhH-HHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIG-LF----EIHQVERAFKLFDEMQRDGVAADTRT-YTIFIDG 75 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~----~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~ 75 (244)
|+--|.+.+++.+|..+.+++... .|-......+..+ +. ......-|.+.|+-.-+++...|+.. -.++.+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 345578899999999988776543 3333333333222 11 12235566666665555555544432 3344555
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHH-HHHHHHHccCChHH
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS-IMIHGLYNDGQMDK 154 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~ 154 (244)
+.-...+++++-.+..++..=.. |...--.+..+++..|.+.+|+++|-++....+. |..+|. .|.+.|.+++.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 55566788888888888765433 3333345788999999999999999888766544 555555 45578889999999
Q ss_pred HHHHHHHHHHcCCCCcHhHHHH-HHHHHHhcCChhHHHHHHHHHHHCCC
Q 046446 155 AHDLFLDMEENAVAPNVITFGT-LIHGFIRINEPSKVIELLHKMKEKNV 202 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~ 202 (244)
|+.++-.+.. +.+..+.-. +..-|.+.+.+--|.+.|+.+...+.
T Consensus 447 AW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 9877754432 223333333 34678888888888888888776543
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.25 E-value=3.9e-05 Score=52.90 Aligned_cols=64 Identities=9% Similarity=-0.104 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA--DTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..+++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445555555566666666666555432111 1234555555555556666666655555543
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=5.5e-05 Score=56.63 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH-HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG-LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (244)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|-..... |...++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888999999999999999999998654 2344555554444 33356777799999998765 45678889999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCcH---hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 046446 146 LYNDGQMDKAHDLFLDMEENAVAPNV---ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (244)
+...|+.+.|..+|+..... +.++. ..|...+..=.+.|+.+.+..+.+++.+. -|+......+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHhh
Confidence 99999999999999998865 33222 48999999888999999999999998875 345555555555553
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.23 E-value=0.0014 Score=55.05 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=141.2
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|++..+. -|+......+..+|.+.+++.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999888776543 8889999999999999999999999998875 5678888888999999888766
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC----------HHHHHHHHHhcccCC-ccccHHHHHHHHHHHHccCChH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGR----------LEIALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~ 153 (244)
-.++--++-+ ..+-+...+-++++.+...-. ..-|.+.++.+.+.+ ..-+..-...-...+...|+++
T Consensus 129 qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 129 QQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 4444444433 335566666667666654321 234667777776554 2222223333345566788999
Q ss_pred HHHHHHHH-HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046446 154 KAHDLFLD-MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215 (244)
Q Consensus 154 ~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (244)
+|+.++.. ..+.-..-+...-+.-+..+...++|.+..++..++...| +|. |...++.
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~s 266 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDS 266 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHH
Confidence 99999943 4443333344444566778888999999999999999886 343 5444444
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=8.8e-06 Score=49.06 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHHHhCCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHH
Q 046446 79 NGYIVESVELFRTLRILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (244)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+ +.+......+..++...|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777665421 2344455567777777777777777776 2221 1123344445666777777777777
Q ss_pred HHHH
Q 046446 158 LFLD 161 (244)
Q Consensus 158 ~~~~ 161 (244)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.22 E-value=0.00017 Score=49.89 Aligned_cols=88 Identities=10% Similarity=-0.037 Sum_probs=59.5
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD--TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3456666677777888888888887776533222 3567777777888888888888888777654 345556666666
Q ss_pred HHHcCCCHHHH
Q 046446 110 GLCKSGRLEIA 120 (244)
Q Consensus 110 ~~~~~~~~~~a 120 (244)
++...|+...+
T Consensus 115 ~~~~~g~~~~a 125 (172)
T PRK02603 115 IYHKRGEKAEE 125 (172)
T ss_pred HHHHcCChHhH
Confidence 77666664443
No 151
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.21 E-value=0.0019 Score=52.44 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=115.3
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhhchHHHHHHHHHHHHHcC-----------CCC----
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPD---VVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-----------VAA---- 64 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------~~~---- 64 (244)
.+.|-..|+.+.|..+|++..+-..+-- ..+|..-...=.++.+++.|+++.++...-. .++
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 4567788999999999998887643221 3345555555556678888888877664321 111
Q ss_pred --ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc-HHHHHH
Q 046446 65 --DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD-VVTYSI 141 (244)
Q Consensus 65 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 141 (244)
+...|...++.--..|-++....+|+++.+..+ .++...-.....+-...-++++++++++-...-..|+ ...|+.
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 223444445555556778888888888887664 3333333333334455567888888887665533344 345666
Q ss_pred HHHHHHc---cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH--HHhcCChhHHHHHHHHHH
Q 046446 142 MIHGLYN---DGQMDKAHDLFLDMEENAVAPNVITFGTLIHG--FIRINEPSKVIELLHKMK 198 (244)
Q Consensus 142 li~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 198 (244)
.+.-+.+ ....+.|..+|++..+ |.+|.-.-+-.++-+ =-+.|....|..++++..
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6554443 2357888888888887 565543322222211 113466666777777654
No 152
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=6.6e-05 Score=51.77 Aligned_cols=81 Identities=12% Similarity=-0.110 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc--cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (244)
...+..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666666677777777777665442111 22356666666666777777777666665442 22234444444
Q ss_pred HHHH
Q 046446 144 HGLY 147 (244)
Q Consensus 144 ~~~~ 147 (244)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.20 E-value=0.00042 Score=52.08 Aligned_cols=201 Identities=9% Similarity=0.083 Sum_probs=124.2
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhCCcHHHHHHHHHHHHH----hCCCcc--H
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRD----GVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRI----LKCELD--I 101 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~ 101 (244)
.|......|-..|++++|.+.|.+..+. +-+. -...|.....+|.+. ++++|.+.+++..+ .| .|+ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4555566677778888888888776432 1111 123455555555554 88888888887754 33 233 3
Q ss_pred HhHHHHHHHHHcC-CCHHHHHHHHHhccc----CCc-cccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-----c
Q 046446 102 QAYSCLIDGLCKS-GRLEIALELFHSLPR----GVL-VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP-----N 170 (244)
Q Consensus 102 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----~ 170 (244)
..+..+...|... |++++|.+.|++..+ .+. ..-...+..+...+.+.|++++|.++|++........ +
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3577788888888 999999999987643 221 1124456778889999999999999999987643221 2
Q ss_pred Hh-HHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC--hhhHHHHHHHHHhc--cccccchhhhhhhhhh
Q 046446 171 VI-TFGTLIHGFIRINEPSKVIELLHKMKEK--NVMPD--ASIVSIVVDLLAKN--EISLNSLPSFTVHERQ 235 (244)
Q Consensus 171 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~ 235 (244)
.. .|...+-++...|++..|...+++.... ++..+ ......|+.+|-.. ..+..++.-|+.+.+-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 21 2333444666789999999999998765 33333 34566777777643 2345556666555443
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=9e-05 Score=57.51 Aligned_cols=91 Identities=8% Similarity=-0.016 Sum_probs=78.3
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+...|+++.|++.|++.++.. +.+...|..+..++...|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 35678899999999999999874 4466778888889999999999999999998863 336778889999999999999
Q ss_pred HHHHHHHHHHHhC
Q 046446 84 ESVELFRTLRILK 96 (244)
Q Consensus 84 ~a~~~~~~~~~~~ 96 (244)
+|...|++..+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998865
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.18 E-value=0.00017 Score=59.34 Aligned_cols=165 Identities=17% Similarity=0.110 Sum_probs=76.7
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
...++|.+|+.+++.+... +.-+.-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+|++|.
T Consensus 743 i~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 3445555555555555544 223334455555555556666665555332 12334455566666666655
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
++-++.. |...+...|-+-..-.-..|++.+|++++-... .|+ ..|..|-+.|..+..+++.+.-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence 5544432 223334444444444445555555554443322 122 2244555555555555554432211
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 167 VAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 167 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
.-..|...+..-+-..|+...|.+-|-+
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 1122333444445555555555554433
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.16 E-value=8.7e-05 Score=52.00 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=35.3
Q ss_pred CccHHhHHHHHHHHHc-----CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 98 ELDIQAYSCLIDGLCK-----SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 98 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
..+..+|..+++.|.. .|..+=....++.|.+.|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4577777777777763 35566666667777777777777777777777665
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.16 E-value=0.00079 Score=49.31 Aligned_cols=173 Identities=9% Similarity=0.006 Sum_probs=107.4
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChh-hH---HHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVV-IH---NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-- 78 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-- 78 (244)
.+.+.|++++|.+.|+.+... .|+.. .. -.+..++.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 456789999999999999986 34332 22 35667888999999999999999886333222333333333331
Q ss_pred CC---------------c---HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHH
Q 046446 79 NG---------------Y---IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140 (244)
Q Consensus 79 ~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+ | ...|++.|+++.+. |-...-..+|...+..+... -...--
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHHH
Confidence 11 1 12344444444443 33233344555444444332 111112
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 141 IMIHGLYNDGQMDKAHDLFLDMEEN--AVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5566788888998898888888864 223345566677888888999998888776554
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.12 E-value=0.00032 Score=48.57 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc--cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMI 143 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (244)
...+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 4467778888888899999999999887654222 24577888888888999999999888877653 23456666677
Q ss_pred HHHHccCChHHHHH
Q 046446 144 HGLYNDGQMDKAHD 157 (244)
Q Consensus 144 ~~~~~~~~~~~a~~ 157 (244)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777776555443
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.12 E-value=0.00014 Score=48.65 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
......+...+...|++++|..+|+-+...... +..-|-.|..++-..|++++|+..|......+ +-++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334455556677889999999999888776332 66677788888888999999999999888877 4678888888889
Q ss_pred HHcCCCHHHHHHHHHhcccC
Q 046446 111 LCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (244)
+...|+.+.|.+.|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.08 E-value=0.001 Score=54.10 Aligned_cols=144 Identities=10% Similarity=-0.005 Sum_probs=91.4
Q ss_pred CCCCChhHHHHHHHHHHhC-----CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC--------CCHHHHHHHHHhc
Q 046446 61 GVAADTRTYTIFIDGLCKN-----GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS--------GRLEIALELFHSL 127 (244)
Q Consensus 61 ~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~ 127 (244)
+.+.|...|...+++.... ++...|..+|++..+.. |-....|..+..++... .++..+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3455677787777775432 23667888888887765 33444555444433221 1233444444443
Q ss_pred ccC-CccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 046446 128 PRG-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206 (244)
Q Consensus 128 ~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 206 (244)
... ..+.+...|..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++....+ |..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 332 123345677777666667788888888888888754 677788888888888888888888888877653 444
Q ss_pred hhH
Q 046446 207 SIV 209 (244)
Q Consensus 207 ~~~ 209 (244)
.||
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 444
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=5.1e-05 Score=43.58 Aligned_cols=52 Identities=25% Similarity=0.220 Sum_probs=27.9
Q ss_pred hCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 78 KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
+.|++++|++.|+++.+.. |-+...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555543 334555555555555555555555555555554
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.07 E-value=0.00013 Score=48.78 Aligned_cols=98 Identities=9% Similarity=-0.045 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (244)
-.....+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|...|......+ +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445566667788999999999999998877 4677788889999999999999999999988776 4578888999999
Q ss_pred HHccCChHHHHHHHHHHHHc
Q 046446 146 LYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~ 165 (244)
+...|+.+.|.+.|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.00091 Score=50.30 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=115.9
Q ss_pred hhhhhcCChhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHc---CCCCC--hhHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSK----GIKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRD---GVAAD--TRTYTIFI 73 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~--~~~~~~ll 73 (244)
..|...|++++|.+.|.+.... +-+.+ ...|......| +..++++|...+++..+. .-.|+ ...+..+.
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA 121 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA 121 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3566678888888888776432 21111 23444444544 444888999888887653 12223 34677888
Q ss_pred HHHHhC-CcHHHHHHHHHHHHHh----CCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCc-----cccHH-HHHH
Q 046446 74 DGLCKN-GYIVESVELFRTLRIL----KCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL-----VADVV-TYSI 141 (244)
Q Consensus 74 ~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~-~~~~ 141 (244)
..|... |+++.|++.|++..+. +.+ .-...+..+...+.+.|++++|.++|++...... .++.. .|-.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 888888 9999999999987653 311 1234567788899999999999999998754321 22222 2334
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC--CCCc--HhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENA--VAPN--VITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
.+-.+...||...|.+.++...... +..+ ......|+.++ ..|+.+.......+.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 4456677899999999999987542 2212 33445566665 455555544444443
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.0014 Score=53.39 Aligned_cols=144 Identities=12% Similarity=0.061 Sum_probs=102.0
Q ss_pred CCCCChhhHHHHHHHHhhh-----chHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhC--------CcHHHHHHHHHH
Q 046446 26 GIKPDVVIHNTLFIGLFEI-----HQVERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCKN--------GYIVESVELFRT 91 (244)
Q Consensus 26 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~--------~~~~~a~~~~~~ 91 (244)
+.+.+...|...+++.... +..+.|..+|++..+. .|+ ...+..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3456778888888875543 3478999999999986 444 44555444433322 122334444444
Q ss_pred HHHh-CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 046446 92 LRIL-KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170 (244)
Q Consensus 92 ~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 170 (244)
.... ..+.+...|.++...+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 3332 134556778888777778899999999999999885 68889999999999999999999999998764 455
Q ss_pred HhHHH
Q 046446 171 VITFG 175 (244)
Q Consensus 171 ~~~~~ 175 (244)
..+|.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 55553
No 165
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00088 Score=55.99 Aligned_cols=165 Identities=17% Similarity=0.181 Sum_probs=98.6
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 120 (244)
....|.+++|+.+|.+-++ |..|=+.|...|.|++|.++-+.=-+- .=..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 3466777888877776654 334445666778888887776542221 1234455555555566677777
Q ss_pred HHHHHhcccCC-------------------ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 046446 121 LELFHSLPRGV-------------------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181 (244)
Q Consensus 121 ~~~~~~~~~~~-------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 181 (244)
++.|++..... ...|...|.-....+-..|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 77776542210 012334444455555567777777777776654 45555655
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhh
Q 046446 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
+-.|+.++|.++.++ .| |......|.+.|...|++.+|..+|...
T Consensus 949 C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666777777666543 22 4455556777777777777777776544
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=0.001 Score=42.76 Aligned_cols=53 Identities=23% Similarity=0.139 Sum_probs=22.0
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCcc--HHhHHHHHHHHHcCCCHHHHHHHHHhcc
Q 046446 76 LCKNGYIVESVELFRTLRILKCELD--IQAYSCLIDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (244)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444433221 1223333344444444444444444433
No 167
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.99 E-value=0.0042 Score=49.55 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccc-cHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
.+.....++++...-..--.-+|-.+++.-.+..-++.|..+|.++.+.+..+ ++...++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45566666666554322334567778888888889999999999999887666 78888999988875 68889999998
Q ss_pred HHHHcCCCCcHhH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhccccccchhhhhhh
Q 046446 161 DMEENAVAPNVIT-FGTLIHGFIRINEPSKVIELLHKMKEKNVMPD--ASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 161 ~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
.-.+. . +|... -...+..+...|+-..+..+|++....++.|+ ...|..++..=+.-|+....+++-+..
T Consensus 426 LGLkk-f-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKK-F-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHh-c-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 75443 2 33333 34567778889999999999999998866665 478999999888889987766655433
No 168
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.001 Score=56.80 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=110.6
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHH
Q 046446 10 KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89 (244)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 89 (244)
+..++|.+.-++.- .+.+|..+..+-.+.|...+|++-|-+. -|+..|..+++...+.|.|++..+++
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45555555443332 3457777887777777777777766322 26667778888888888888888777
Q ss_pred HHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhc-----cc-------CC-------ccccHHHHHHHHHHHHccC
Q 046446 90 RTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-----PR-------GV-------LVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~-------~~-------~~~~~~~~~~li~~~~~~~ 150 (244)
...++..-+|... +.|+-+|++.+++.+-+++..-- .. .+ +-.+...|..|...+...|
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7776655444433 46777777777776655544210 00 00 0112333455555555666
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhh
Q 046446 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
++..|...-+.. .+..||..+-.+|...+.+..| +|-..++.....-..-++..|...|-+++.+..++
T Consensus 1235 eyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 666554433221 3556676666666665554433 22233333344445556666666666655555554
No 169
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.94 E-value=0.00097 Score=55.15 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=24.6
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEM 57 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 57 (244)
|+.|.+.|.+.+|.+....=.. +..|......+..++.+..-+++|-++|+++
T Consensus 622 iqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 622 IQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred HHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 5566777777666554322111 1234444444444444444444444444443
No 170
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0019 Score=51.84 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=113.5
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCH
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 117 (244)
++.+...+++++|.+...++...+ +-|...+..-+-+..+.+.+++|+.+.+.-... ..+...+---.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455677899999999999999876 446677888888899999999999666543211 11111111223345588999
Q ss_pred HHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH-HHhcCChhHHHHHHHH
Q 046446 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG-FIRINEPSKVIELLHK 196 (244)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~ 196 (244)
++|+..++.+... +..+...-...+-+.|++++|..+|+.+.+++.. + +...+.+ +...+---.+. .
T Consensus 96 Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~----~ 163 (652)
T KOG2376|consen 96 DEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ----L 163 (652)
T ss_pred HHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH----H
Confidence 9999999944432 3446666678888999999999999999876432 2 2222221 11111111111 1
Q ss_pred HHHCCCCCChhhHHHHHH---HHHhccccccchhhhhhhh
Q 046446 197 MKEKNVMPDASIVSIVVD---LLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~ 233 (244)
+......| ..+|..+.. .+...|++.+|++.++...
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22223333 334444443 5567889999998888773
No 171
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.93 E-value=0.0033 Score=53.66 Aligned_cols=215 Identities=13% Similarity=-0.023 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHH
Q 046446 12 IEGALNLYSEMLSKGIKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90 (244)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 90 (244)
...|...|-+..+. .|+ ...|..|...|....+...|.+.|....+... .+..........|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 55566666555554 333 34688888888888888899999988887633 367778888999999999999998844
Q ss_pred HHHHhC-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 046446 91 TLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169 (244)
Q Consensus 91 ~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 169 (244)
..-+.. ...-...|....-.|...++..+|..-|+...+.. +-|...|..+..+|.+.|++..|.++|...... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 433321 11112223334456778888889999898888775 557889999999999999999999999887763 33
Q ss_pred cHhHHHHHHH--HHHhcCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 170 NVITFGTLIH--GFIRINEPSKVIELLHKMKEK------NVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 170 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
+ .+|..... .-+..|.+.++...+...... +-.--..++-.+...+...|-..++..+++...
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3 33433322 234578888888888776532 111123444444455555555555555555433
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.92 E-value=0.0017 Score=46.22 Aligned_cols=178 Identities=11% Similarity=0.079 Sum_probs=94.8
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC
Q 046446 37 LFIGLFEIHQVERAFKLFDEMQRDGVA--ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114 (244)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 114 (244)
....+...|++.+|...|+.+...... --....-.++.++.+.|+++.|...++++.+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 334455778888888888888776221 123445567778888888888888888887753211122233333333221
Q ss_pred CCHHHHHHHHHhcccCC---ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHH
Q 046446 115 GRLEIALELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191 (244)
Q Consensus 115 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 191 (244)
....... ....+ ..--...+..++.-|-...-..+|...+..+.+. .-..- -.+...|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHHHHH
Confidence 1111111 00000 0001234556666666666667776666655432 11111 23456778888888888
Q ss_pred HHHHHHHHC--CCCCChhhHHHHHHHHHhccccc
Q 046446 192 ELLHKMKEK--NVMPDASIVSIVVDLLAKNEISL 223 (244)
Q Consensus 192 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 223 (244)
.-++.+.+. +..........++.+|.+.|..+
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 888888775 21222345567777888777765
No 173
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0034 Score=53.83 Aligned_cols=159 Identities=14% Similarity=0.218 Sum_probs=94.2
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
...+-+++|..+|+... .+....+.+|. ..+..++|.++-++.. .+..|..+.++-.+.|...+|+
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 33444555555554322 23333344433 2244555555443322 4567888888888888888887
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
+-|-+. -|+..|.-+++...+.|.+++-.+++.-..+....|.. =+.||-+|.+.++..+.++++.
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc------
Confidence 766542 46677888888888888888888888777666545443 3567778888888777666542
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHH
Q 046446 167 VAPNVITFGTLIHGFIRINEPSKVIELL 194 (244)
Q Consensus 167 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 194 (244)
-||......+..-|...|.++.|.-+|
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 244444444444444444444444333
No 174
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0038 Score=45.31 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=97.9
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH---
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI--- 108 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--- 108 (244)
.+.+.++..+...|.+.-.++.+++..+...+.++.....|++.--+.||.+.|...|++..+..-..+..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556677777778888889999999888777788888889999899999999999999877654344544444443
Q ss_pred --HHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 109 --DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 109 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
..|.-.+++-.|...+.++...+ +.|+...|.-.-...-.|+..+|.+.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556677888888888887764 335555555444445568889999999988875
No 175
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0069 Score=48.15 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=129.3
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHH-------HHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI-------FIDG 75 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~ 75 (244)
.+...+..+++.|++.+....... -+..-++....+|...|.+......-....+.|.. ...-|+. +..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 345566778888888888888763 34555666777788888888887777776666543 2222333 3345
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhH-------------------------HHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAY-------------------------SCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
|.+.++++.+...|++.......|+...- ..-...+.+.|++..|...|.+++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 66677888888888876543323322211 11134566778888888888888877
Q ss_pred CccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
. +-|...|..-.-+|.+.|.+..|++-.+...+.. ++....|..=..++....+++.|.+.|.+..+.+
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 5578888888888888888888888777766642 2233444444455555677888888888877764
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.91 E-value=0.0012 Score=42.46 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=23.6
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhhhchHHHHHHHHHHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPD--VVIHNTLFIGLFEIHQVERAFKLFDEMQR 59 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 59 (244)
+-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|+.++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555544443322 11233333444444555555555544443
No 177
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.88 E-value=0.0058 Score=46.16 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=134.6
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCC------------Chh--HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhH
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAA------------DTR--TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~------------~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (244)
..+.+.|.+++|..=|+...+....- ... .....+..+...||...|++....+.+-. +-+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 34567889999999999988763211 111 12234455667899999999999998865 5688888
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhH----HH-----
Q 046446 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT----FG----- 175 (244)
Q Consensus 105 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~----- 175 (244)
..-..+|...|++..|..=++...+.. ..+..++.-+-..+...|+.+.++...++..+. .||-.. |.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 888999999999999988777665543 336777777788888899999999999888764 455322 11
Q ss_pred --HH--HHHHHhcCChhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 176 --TL--IHGFIRINEPSKVIELLHKMKEKNVM---PDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 176 --~l--~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+ +......++|.++.+-.+...+.... .....+..+-.++...|++-+|++...+...
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 11 12234567888888888777765433 1234555677788888888888887765543
No 178
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.86 E-value=0.01 Score=49.33 Aligned_cols=207 Identities=11% Similarity=0.003 Sum_probs=126.7
Q ss_pred CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc-cHHhH
Q 046446 26 GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL-DIQAY 104 (244)
Q Consensus 26 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 104 (244)
.+.-+...|..+--+....|+++.+.+.|++....-+ -....|+.+...|...|.-..|..+++.-....-.| ++..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 4456778888888888888999999888888766422 356778888888888888888888887654432123 33333
Q ss_pred HHHHHHH-HcCCCHHHHHHHHHhcccC--C--ccccHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHcCCC
Q 046446 105 SCLIDGL-CKSGRLEIALELFHSLPRG--V--LVADVVTYSIMIHGLYND-----------GQMDKAHDLFLDMEENAVA 168 (244)
Q Consensus 105 ~~ll~~~-~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 168 (244)
-..-..| -+.+..++++++-.+.... + -......|..+.-+|... ....++.+.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333333 3445566666655554431 1 011233344443333321 1234566666666654332
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 169 PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 169 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
|+.....+.--|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22222233334556778888888888888775566777777777788888888777777665433
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00054 Score=50.34 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=77.2
Q ss_pred HHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHH
Q 046446 40 GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119 (244)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 119 (244)
-+.+.+++.+|+..|.+.++.. +-|++-|..=..+|++.|.++.|++-.+.....+ +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3456678888888888888862 3366667777888889998888888888877765 4567788888889999999999
Q ss_pred HHHHHHhcccCCccccHHHHHHHHHH
Q 046446 120 ALELFHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (244)
|.+.|++..+. .|+-.+|-.=+..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 99888888776 5666565444433
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0004 Score=50.99 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=79.8
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
+.+.++|++|+..|.+.++.. +-|...|..=..+|++.|.++.|++-.+...... +--..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 567899999999999999983 4466667778889999999999999988887752 22467899999999999999999
Q ss_pred HHHHHHHHHhCCCccHHhHHH
Q 046446 86 VELFRTLRILKCELDIQAYSC 106 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ 106 (244)
++.|++..+. .|+-.+|-.
T Consensus 169 ~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHH
Confidence 9999998875 466555543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=0.00023 Score=40.78 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=31.0
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
..|++++|+.+|+++.+... -+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666666666666665522 25555556666666666666666666666654
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=0.0002 Score=41.23 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-cHHHHHHHHHHHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG-YIVESVELFRTLR 93 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~ 93 (244)
..|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444432 113334444444444444 3444444444443
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.77 E-value=0.00014 Score=41.33 Aligned_cols=52 Identities=12% Similarity=0.266 Sum_probs=20.7
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
+.+.|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444332 1133334444444444444444444444443
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0052 Score=42.27 Aligned_cols=132 Identities=11% Similarity=0.008 Sum_probs=85.8
Q ss_pred CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC---ccccHHH
Q 046446 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV---LVADVVT 138 (244)
Q Consensus 62 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 138 (244)
+.|+...-..|..+..+.|+..+|...|++...--+--|......+.++....+++..|...++.+.+.+ ..|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4566666667777888888888888888887765455667777777777778888888888877766542 2233 3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
.-.+.+.+...|.+.+|+.-|+.....- |+...-......+.++|+..++..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4455677777788888888888777643 44333333333445666555554443333
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.75 E-value=0.00049 Score=39.53 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=55.9
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC-CHHHHHHHHHhcccC
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG-RLEIALELFHSLPRG 130 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~ 130 (244)
++.+|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999886 567888999999999999 799999999887653
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.00041 Score=39.35 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=25.0
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 59 (244)
.+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555554442 22333444444444555555555555554443
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.011 Score=45.16 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=85.6
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 046446 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180 (244)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 180 (244)
..+.+..+.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++..++... +-++..|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 3455666777888899999998888775 47899999999999999999988876532 1245779999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhh
Q 046446 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 181 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
|.+.|...+|..+... ++ +..-+..|.++|++.+|.+.--
T Consensus 247 ~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999888776 22 2456788889999888866643
No 188
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0067 Score=48.22 Aligned_cols=164 Identities=19% Similarity=0.128 Sum_probs=109.8
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
+|.+.++++.|+..|.+.......|+. ..+....++++...+...-.+... ..-...-...+.+.|++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHH
Confidence 566667777777777776554333221 233445555555555544332221 1222333667888999999
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|+..|.+++... |-|...|..-..+|.+.|.+..|++--+...+.+ ++....|.-=..++....++++|.+.|++..+
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887 6788999999999999999999998888777763 33455555555666667789999999998887
Q ss_pred cCCCCcHhHHHHHHHHHH
Q 046446 165 NAVAPNVITFGTLIHGFI 182 (244)
Q Consensus 165 ~~~~p~~~~~~~l~~~~~ 182 (244)
.. |+..-+.--+.-|.
T Consensus 455 ~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 455 LD--PSNAEAIDGYRRCV 470 (539)
T ss_pred cC--chhHHHHHHHHHHH
Confidence 53 55444443333333
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0012 Score=47.84 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=104.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHH-----HHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF-----IDGL 76 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----l~~~ 76 (244)
++..+.-.|.+.-..+++.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-..|..+.+.+ ...|
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 34555667788888899999988765667888888999999999999999999988765444444444433 3455
Q ss_pred HhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHH
Q 046446 77 CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
...+++..|...+.+....+ +.++...|.-.-+..-.|+..+|.+.++.+.+. .|...+-+++
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 66778889999998888776 467777777666777789999999999999987 4555444433
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.0034 Score=44.74 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=99.8
Q ss_pred hhhhhcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
..+.+.|++.+|.+.|+.+...- -+-.....-.++.++.+.|+++.|...+++..+.-..-....+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 35678999999999999998862 1222345567788899999999999999998876322222223323333221111
Q ss_pred HHHHHHHHHHHHHhCC---CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHH
Q 046446 82 IVESVELFRTLRILKC---ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
..... ...... .--...+..++.-|-...-..+|...+..+... =...--.+...|.+.|.+..|..-
T Consensus 93 ~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 93 IPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred Cccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHH
Confidence 11110 000000 001223445555555556666666666555432 111223356778899999999999
Q ss_pred HHHHHHcCCCCcH----hHHHHHHHHHHhcCChhHHH
Q 046446 159 FLDMEENAVAPNV----ITFGTLIHGFIRINEPSKVI 191 (244)
Q Consensus 159 ~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~ 191 (244)
++.+.+.= |++ .....++.++.+.|..+.+.
T Consensus 164 ~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99988752 332 34566778888888877443
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.009 Score=44.23 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=75.3
Q ss_pred CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc---CChHHHHHHHHHHHHcCCCCcHhHH
Q 046446 98 ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND---GQMDKAHDLFLDMEENAVAPNVITF 174 (244)
Q Consensus 98 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~ 174 (244)
|-|...|-.|...|...|+++.|..-|.+..+.. +++...+..+..++... ..-.++..+|+++..... -|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 5678888888888888888888888888877653 44666666666665543 235578888888877543 266666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 175 GTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 175 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
..+...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777778888888888888888888764
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.62 E-value=0.00031 Score=47.19 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=54.2
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHH-----HhCCCccHHhHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR-----ILKCELDIQAYS 105 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 105 (244)
.....++..+...|+++.|..+.+.+... -+.|...|..+|.++...|+...|.++|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 35667777888899999999999999887 34478899999999999999999999998874 358888877643
No 193
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.62 E-value=0.0011 Score=43.16 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=26.7
Q ss_pred ccccHHHHHHHHHHHHccCChHHHHHHHHHHH-HcCCCCcHhHHHHHHH
Q 046446 132 LVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-ENAVAPNVITFGTLIH 179 (244)
Q Consensus 132 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~ 179 (244)
..|+..+..+++.+|+..|++..|.++++... ..+++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45555666666666666666666666655544 2344445555555554
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.61 E-value=0.0077 Score=51.58 Aligned_cols=183 Identities=10% Similarity=-0.005 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 046446 47 VERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFH 125 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (244)
...++..|-+..+. .|+ ...|..|...|....|...|.+.|+..-+.+ ..+...+..+.+.|+...+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45555555444443 222 4568888888888888889999999888766 4577788889999999999999999844
Q ss_pred hcccCC-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 046446 126 SLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP 204 (244)
Q Consensus 126 ~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 204 (244)
..-+.. ...-...|....-.|...++...|..-|+......+. |...|..+..+|.++|++..|.++|.+.... +|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 333321 1111223344445677888999999999888775433 7788999999999999999999999988764 45
Q ss_pred ChhhHHHHHH--HHHhccccccchhhhhhhhhhh
Q 046446 205 DASIVSIVVD--LLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 205 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+. +|...-. .-+..|++.+++..++.+....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 43 3333333 3355788899988888766543
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.008 Score=44.48 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC---CHHHHHHHHHhcccCCccccHHHH
Q 046446 63 AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG---RLEIALELFHSLPRGVLVADVVTY 139 (244)
Q Consensus 63 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 139 (244)
+-|...|..|...|...|+.+.|..-|.+..+.. +++...+..+..++.... .-.++..+|+++...+ +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4478889999999999999999999999888765 567777777776665433 3567888999888775 4467777
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 046446 140 SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180 (244)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 180 (244)
..|...+...|++.+|...|+.|.+.. |....+..++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 777788888999999999999988753 333345555543
No 196
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.003 Score=53.04 Aligned_cols=199 Identities=11% Similarity=0.027 Sum_probs=120.7
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc-C--------CCCChhHHHHHHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-G--------VAADTRTYTIFIDG 75 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~ll~~ 75 (244)
.|..-|+.+.|.+-.+.++ +..+|..+.+.|.+..+++-|.-.+..|... | -.|+ .+-..+.-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4556688888877766555 4467888888888887777666655555321 0 1121 222222233
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
....|..++|+.+|.+-++.+ .|=..|-..|.+++|+++-+.-.+.. -..||......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 446788889999988877543 24456777889999988876544332 345677777777777888888
Q ss_pred HHHHHHHHH----------cC---------CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046446 156 HDLFLDMEE----------NA---------VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 156 ~~~~~~~~~----------~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
++.|+.... .. -..|...|..-...+-..|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 888764321 10 012344444444555556666666666665443 33455555
Q ss_pred Hhccccccchhhhhh
Q 046446 217 AKNEISLNSLPSFTV 231 (244)
Q Consensus 217 ~~~g~~~~a~~~~~~ 231 (244)
+-.|+.++|.++-++
T Consensus 949 C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE 963 (1416)
T ss_pred eeccCchHHHHHHHh
Confidence 666777666665543
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.56 E-value=0.0021 Score=47.61 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=74.7
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC--CCccHHhHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD----TRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYS 105 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 105 (244)
..|...+....+.|++++|...|+.+.+.. |+ ...+..+..+|...|++++|...|+.+.+.- -+....++-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 446666655566789999999999998863 33 3577788899999999999999999998652 122355566
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 106 CLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.+...+...|+.++|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677788899999999999988876
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.55 E-value=0.0035 Score=40.75 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=31.1
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHH
Q 046446 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDLLA 217 (244)
Q Consensus 166 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 217 (244)
...|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|++...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34566666666666666666666666666665543 55555666666665443
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.0021 Score=43.14 Aligned_cols=71 Identities=8% Similarity=0.179 Sum_probs=37.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCChhhH
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE-----KNVMPDASIV 209 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 209 (244)
+...++..+...|++++|.++.+.+.... +.+...|..++.++...|+...|.+.|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34445555566666666666666666542 23555666666666666666666666666542 3666665543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.52 E-value=0.0041 Score=46.08 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc----HHhHHHHHHHHHcCCCHHHHHHHHHhcccCC--ccccHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD----IQAYSCLIDGLCKSGRLEIALELFHSLPRGV--LVADVVTY 139 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 139 (244)
...|...+..+.+.|++++|...|+.+.+.. |+ ..++--+..+|...|++++|...|+.+.... -+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3456666666677799999999999999864 33 3567788899999999999999999987542 12235566
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 140 SIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
..+...+...|+.++|..+|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777888999999999999998875
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.0014 Score=38.03 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=31.4
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 60 (244)
..|.+.++++.|.++++.+...+ +.+...|.....++.+.|++++|...|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666665553 334444555555555666666666666655553
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.45 E-value=0.0012 Score=38.41 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=18.9
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.+++..
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444443331 1133333333333444444444444444433
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0035 Score=42.29 Aligned_cols=91 Identities=8% Similarity=-0.061 Sum_probs=64.4
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCH
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 117 (244)
...+...|++++|..+|.-+...+.- +..-|..|..++-..+.+++|...|...-..+. -|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 34455678888888888877665433 556666777777778888888888877665542 4444455567788888888
Q ss_pred HHHHHHHHhcccC
Q 046446 118 EIALELFHSLPRG 130 (244)
Q Consensus 118 ~~a~~~~~~~~~~ 130 (244)
+.|...|+.....
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888877764
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.034 Score=42.54 Aligned_cols=110 Identities=11% Similarity=0.110 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHH
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (244)
.+.+.-+.-+...|....|.++-.+.. .|+...|...+.+++..++|++-.++-.. . -++.-|...+.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHH
Confidence 355556677788899888888877663 48999999999999999999988776543 1 1357899999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
...|+..+|..++..+ .+..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999888761 135567888999999999876544
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.37 E-value=0.001 Score=39.25 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHc----CCC-CC-hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRD----GVA-AD-TRTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
+|+.+...|...|++++|+..|++..+. |.. |+ ..+++.+..++...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666655432 110 11 3345555566666666666666665543
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.21 E-value=0.066 Score=41.64 Aligned_cols=166 Identities=12% Similarity=-0.006 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhC---CCccHHhHHHHHHHHHc---CCCHHHHHHHHHhcccCCccccHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILK---CELDIQAYSCLIDGLCK---SGRLEIALELFHSLPRGVLVADVVTYSI 141 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (244)
+...++-+|-...+++...++++.+.... +.-+...--...-++.+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33445556777777777777777776542 11122222233445555 6777777777777444444566677776
Q ss_pred HHHHHHc---------cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-hh---HHHHHH---H-HHHHCC---
Q 046446 142 MIHGLYN---------DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE-PS---KVIELL---H-KMKEKN--- 201 (244)
Q Consensus 142 li~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~a~~~~---~-~~~~~~--- 201 (244)
+...|-. ....++|...|.+.-+. .||..+=-.++..+...|. ++ +..++- . .+.++|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 6665543 11245555555544332 2333222222222222222 11 112221 1 111222
Q ss_pred CCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 202 VMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
-..+-..+..++.+..-.|+.++|.+..+.+.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2334555666777777777777777777766543
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.20 E-value=0.0013 Score=38.81 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHh----CC-Cc-cHHhHHHHHHHHHcCCCHHHHHHHHHhc
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRIL----KC-EL-DIQAYSCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
.+++.+...|...|++++|+..|++..+. |- .| ...++..+..+|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777777777777777766542 10 11 1445666666777777777777766654
No 208
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.20 E-value=0.041 Score=44.13 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 112 (244)
..+.++..+-+.|..+.|+.+-.+-.. -.....+.|+.+.|.++.++ ..+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 345555555555555555544322211 12233345555555544332 234556666666666
Q ss_pred cCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHH
Q 046446 113 KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE 192 (244)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 192 (244)
+.|+++-|++.|++... |..|+-.|.-.|+.+...++.+.....|- ++..+.++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666655543 33444455555555555555554444321 3334444444555555554
Q ss_pred HHH
Q 046446 193 LLH 195 (244)
Q Consensus 193 ~~~ 195 (244)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 209
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.064 Score=40.67 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=100.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhCCcHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD---GVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
-.|++.+|-..|+++.+. .|.|...++..=.+|.-.|+-+.....++++... +++..+.+-....-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457777777778887775 3556667777777888888888887777777654 222222222333344456788888
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcc---ccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV---ADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
|++.-++..+.+ +.|..+..++...+-..|+.+++.+++.+-...-.. .-...|=...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888888887766 567777788888888888888888887765543111 1112222333345556888888888875
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.033 Score=45.87 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh--------
Q 046446 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA-------- 206 (244)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------- 206 (244)
+..+...+...+.+...+.-|-++|..|-+ ...++......++|.+|..+.+...+. .||.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 344555555556667777788888877754 245677778889999999888776542 3332
Q ss_pred ---hhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 207 ---SIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 207 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.-|.---++|.++|+..+|.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12333445788888888888888776543
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.07 E-value=0.0074 Score=46.74 Aligned_cols=231 Identities=15% Similarity=0.090 Sum_probs=139.5
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhhhchHHHHHHHHHHH--HHc------CCCC---------
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPD----VVIHNTLFIGLFEIHQVERAFKLFDEM--QRD------GVAA--------- 64 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~------~~~~--------- 64 (244)
+++.|+....+..|+...+.| .-| ...|..|.++|.-.+++++|+++...= ..+ |-.-
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 678999999999999999987 233 345677778888888999998875431 110 1000
Q ss_pred ----------------------------ChhHHHHHHHHHHhCCc--------------------HHHHHHHHHHHHH--
Q 046446 65 ----------------------------DTRTYTIFIDGLCKNGY--------------------IVESVELFRTLRI-- 94 (244)
Q Consensus 65 ----------------------------~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~-- 94 (244)
....+..+...|...|+ ++.|.++|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 01112222222222221 1222223222111
Q ss_pred --hCC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhc----ccCCc-cccHHHHHHHHHHHHccCChHHHHHHHHHHH---
Q 046446 95 --LKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSL----PRGVL-VADVVTYSIMIHGLYNDGQMDKAHDLFLDME--- 163 (244)
Q Consensus 95 --~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--- 163 (244)
.|- -.-...|..|.+.|.-.|+++.|...-+.- .+.|- ......+..+.+++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 110 012233455555555667888887665432 22221 1234567788888888999999999887643
Q ss_pred -HcCC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 164 -ENAV-APNVITFGTLIHGFIRINEPSKVIELLHKMKE----K-NVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 164 -~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+.|- .....+..+|...|.-..++++|+.++.+-.. . ...-....+.+|..+|...|..++|+.+.+...+..
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2221 12344566677777777888999888776432 1 122356788899999999999999999988877654
Q ss_pred c
Q 046446 237 E 237 (244)
Q Consensus 237 ~ 237 (244)
.
T Consensus 346 ~ 346 (639)
T KOG1130|consen 346 L 346 (639)
T ss_pred H
Confidence 3
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.04 E-value=0.043 Score=43.39 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=38.9
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccH----HhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI----QAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
+...++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666666666666666666666665543 332 24666666666666666666666666553
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.03 E-value=0.05 Score=43.63 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=104.9
Q ss_pred HhhhchHHHHHHHHH--HHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHH
Q 046446 41 LFEIHQVERAFKLFD--EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 118 (244)
..-.++++.+.+..+ ++.. .+ +..-.+.++..+.+.|..+.|+++...-. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 334578888777664 1121 12 24557788888999999999998765422 2245667889999
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
.|.++.++.. +...|..|.....+.|+++-|++.|....+ |..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 9988765554 677999999999999999999999987654 6777778888899888888888777
Q ss_pred HCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 199 EKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
..|- ++....++.-.|+.++..+++....
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7652 4455556666777777777765443
No 214
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.042 Score=41.62 Aligned_cols=152 Identities=13% Similarity=0.027 Sum_probs=100.5
Q ss_pred hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh---CCCccHHhHHHHHHHHHcCCCHHHH
Q 046446 44 IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL---KCELDIQAYSCLIDGLCKSGRLEIA 120 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 120 (244)
.|+..+|-..++++.+. .+.|...+...=++|.-.|+...-...++++... +.|-.......+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45566666667777665 4556777777778888888888888888877654 2222233334445556678889999
Q ss_pred HHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 121 LELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN---AVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
++.-++..+.+ +.|.-.-.+....+-..|++.++.++..+-... +...-.+.|-...-.+...+.++.|+++|+.-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 98888888776 446666677777777888888888877654321 11112233434444556678889999988753
No 215
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.98 E-value=0.05 Score=36.15 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=21.8
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
.++..+.+.+.......+++.+...+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 444445444555555555555554442 3444555555555543
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.95 E-value=0.059 Score=36.53 Aligned_cols=86 Identities=15% Similarity=-0.021 Sum_probs=45.3
Q ss_pred HcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHH
Q 046446 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191 (244)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 191 (244)
...|++++|..+|.-+.-.+ +-+..-|..|...+-..+++++|...|......+. -|+..+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34566666666666554433 22344455555555556666666666655443322 23333444455556666666666
Q ss_pred HHHHHHHH
Q 046446 192 ELLHKMKE 199 (244)
Q Consensus 192 ~~~~~~~~ 199 (244)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655554
No 217
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.95 E-value=0.011 Score=43.55 Aligned_cols=87 Identities=10% Similarity=0.145 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHh-----CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC----------------CHHHHHHH
Q 046446 65 DTRTYTIFIDGLCK-----NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG----------------RLEIALEL 123 (244)
Q Consensus 65 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~~ 123 (244)
|..+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+-. +-+-+.++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44455555444432 2445555555666666666666666666666554321 12345666
Q ss_pred HHhcccCCccccHHHHHHHHHHHHccCC
Q 046446 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (244)
+++|...|+.||..+-..+++++++.+-
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 7777777777777777777777766554
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.053 Score=41.99 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
++..+..++.+.+++..|++........+ ++|.-..-.-..+|...|+++.|...|+.+.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 45555666666666666666666666655 455555555566666666666666666666655
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.89 E-value=0.031 Score=44.19 Aligned_cols=66 Identities=17% Similarity=0.020 Sum_probs=57.9
Q ss_pred CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccH----HHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 98 ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV----VTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 98 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
+.+...++.+..+|...|++++|...|++..+.+ |+. .+|..+..+|...|+.++|...++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999988774 553 45999999999999999999999998874
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.87 E-value=0.14 Score=39.71 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=48.7
Q ss_pred hchHHHHHHHHHHHHHcCCCCChhH--HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHH
Q 046446 44 IHQVERAFKLFDEMQRDGVAADTRT--YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 121 (244)
.|+++.|.+-|+.|... |.... ...|.-.-.+.|+.+.|.++-++.-..- +.-...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 47777777777777653 22221 2233333445677777776666655443 334556677777777777777777
Q ss_pred HHHHhcc
Q 046446 122 ELFHSLP 128 (244)
Q Consensus 122 ~~~~~~~ 128 (244)
++++.-.
T Consensus 209 kLvd~~~ 215 (531)
T COG3898 209 KLVDAQR 215 (531)
T ss_pred HHHHHHH
Confidence 7776543
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.86 E-value=0.08 Score=36.71 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=103.7
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
.+..+..+.-|++...+-..+-. ..-|+...--.|..+....|+..+|...|++....-.-.|....-.+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 34444555555555443333222 2357777777788888899999999999988887666667888888888888889
Q ss_pred ChHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccc
Q 046446 151 QMDKAHDLFLDMEENAV-APNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225 (244)
Q Consensus 151 ~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (244)
++..|...++.+-+... .-++.+.-.+.+.+...|++.+|+.-|+..... -|+......-...+.+.|+..++
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 99999998888776431 112334455677888889988888888888775 35555444455566777766544
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.15 Score=39.70 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=106.4
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcC---CCCChhHHHHHHHHHHh---CCcHHHHHHHHHHHHHhCCCccHHhHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDG---VAADTRTYTIFIDGLCK---NGYIVESVELFRTLRILKCELDIQAYS 105 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (244)
.+...++-+|....+++..+++.+.+.... +.-...+-....-++.+ .|+.++|++++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455567889999999999999998752 11122222234445556 899999999999966656678899998
Q ss_pred HHHHHHHc---------CCCHHHHHHHHHhcccCCccccHH---HHHHHHHHHHccC-ChHHHHHHH---H-HHHHcCC-
Q 046446 106 CLIDGLCK---------SGRLEIALELFHSLPRGVLVADVV---TYSIMIHGLYNDG-QMDKAHDLF---L-DMEENAV- 167 (244)
Q Consensus 106 ~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~-~~~~a~~~~---~-~~~~~~~- 167 (244)
.+.+.|-. ...+++|...|.+.-+.. |+.. -+-+|+....... .-.+..++- . ...+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88877642 224778888888765442 3322 2233333322211 111222222 1 1223332
Q ss_pred --CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 168 --APNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 168 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
..+--.+.+++.++.-.|+.++|.+..++|....
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2344456788899999999999999999999764
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.84 E-value=0.021 Score=42.12 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=76.2
Q ss_pred CCChhhHHHHHHHHhhh-----chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC----------------cHHHHH
Q 046446 28 KPDVVIHNTLFIGLFEI-----HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG----------------YIVESV 86 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 86 (244)
+.|..+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+.. .-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45667777777666543 567777888889999999999999999998875532 234578
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCH-HHHHHHHHhc
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRL-EIALELFHSL 127 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 127 (244)
.++++|...|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8999999999999999999999999987753 3344444433
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.11 Score=37.68 Aligned_cols=189 Identities=10% Similarity=0.097 Sum_probs=112.2
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHhhhchHHHHHHHHHHHHH---cCCCCChhHHH--HH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDV------VIHNTLFIGLFEIHQVERAFKLFDEMQR---DGVAADTRTYT--IF 72 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~--~l 72 (244)
.+|....++++|...+.+..+- ...+. -.|...+...-....+.++..++++... ..-.|++.... --
T Consensus 39 vafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3566678888888877766532 12222 2344444444555677888888877543 22344554331 11
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHh---C--CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-----ccccHHHHHHH
Q 046446 73 IDGLCKNGYIVESVELFRTLRIL---K--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-----LVADVVTYSIM 142 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 142 (244)
.+ .....++++|+++|++.... + ...-...+..+-+.+.+...+++|-..+.+-.... ...--..|...
T Consensus 118 ak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ 196 (308)
T KOG1585|consen 118 AK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAA 196 (308)
T ss_pred HH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHH
Confidence 11 23456788899998876432 1 11223345666677788888887776665432211 11112345666
Q ss_pred HHHHHccCChHHHHHHHHHHHHcC---CCCcHhHHHHHHHHHHhcCChhHHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEENA---VAPNVITFGTLIHGFIRINEPSKVIELLH 195 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 195 (244)
|-.+....++..|...++.-.+.+ -.-+..+...|+.+|- .|+.+++..++.
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 777777889999999998754432 2235677888888874 688887776653
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.81 E-value=0.14 Score=40.47 Aligned_cols=130 Identities=18% Similarity=0.140 Sum_probs=71.0
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
.+|...|+...+..-++.|..+|-+..+.| ..++...+++++..++. |+...|..+|+--... .+.++.--+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 344555555555566666666666666666 44555666666665543 4556666666543332 12222223445555
Q ss_pred HHcCCCHHHHHHHHHhcccCCcccc--HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVAD--VVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
+.+.++-+.|..+|+..... +..+ ...|..+|..=..-|+...+..+=+.|.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 56666666666666643322 0111 34566666666666666666665555554
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.72 E-value=0.14 Score=40.48 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhC-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHH-HHHHHH
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT-YSIMIH 144 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~ 144 (244)
.+|...++...+..-.+.|..+|-+..+.+ +.+++.++++++..++. |+...|.++|+.-... -||... -+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778778899999999999888 56788888999987775 7888899999875443 234433 356677
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046446 145 GLYNDGQMDKAHDLFLDMEENAVAPN--VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (244)
.+.+.++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+=++|.+. -|-..+...+.+-|.-
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 778889999999999865432 1122 467888888888889988888777777664 3555555555555543
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.69 E-value=0.26 Score=40.13 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred HHHhhhchHHHHHHHHHHHHHcC-CCCC-----hhHHHHHHHHHHh----CCcHHHHHHHHHHHHHhCCCccHHhHHHH-
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDG-VAAD-----TRTYTIFIDGLCK----NGYIVESVELFRTLRILKCELDIQAYSCL- 107 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 107 (244)
....-.|+-+.+++.+.+..+.+ +.-. .-.|+..+..++. ..+.+.|.++++.+.+. -|+...|...
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~ 273 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFE 273 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 44445577788888877765532 2211 1234444444443 34677888899888875 4666665443
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCC---ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH-HHHh
Q 046446 108 IDGLCKSGRLEIALELFHSLPRGV---LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH-GFIR 183 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~ 183 (244)
.+.+...|++++|.+.|+...... .+.....+--+.-.+....+|++|...|..+.+..-. +..+|..+.. ++..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHh
Confidence 456677889999999999765321 1122333444555677788999999999988865322 3444544443 3345
Q ss_pred cCCh-------hHHHHHHHHHH
Q 046446 184 INEP-------SKVIELLHKMK 198 (244)
Q Consensus 184 ~g~~-------~~a~~~~~~~~ 198 (244)
.|+. ++|.++|.+..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHH
Confidence 6777 77888887765
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.68 E-value=0.16 Score=41.32 Aligned_cols=158 Identities=10% Similarity=0.018 Sum_probs=102.9
Q ss_pred HHHHhCCcHHHHHHHHHHHHHhCCCccH------HhHHHHHHHHHc----CCCHHHHHHHHHhcccCCccccHHHHHHHH
Q 046446 74 DGLCKNGYIVESVELFRTLRILKCELDI------QAYSCLIDGLCK----SGRLEIALELFHSLPRGVLVADVVTYSIMI 143 (244)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (244)
....=.||-+.+++.+.+..+.+--..+ -.|...+..++. ....+.|.++++.+.+. -|+...|...-
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~ 273 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFE 273 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 3344568999999999887654311222 234444444443 45678999999999987 57776665543
Q ss_pred -HHHHccCChHHHHHHHHHHHHcC---CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HHHh
Q 046446 144 -HGLYNDGQMDKAHDLFLDMEENA---VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD-LLAK 218 (244)
Q Consensus 144 -~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 218 (244)
+.+...|+.++|.+.|+...... .+.....+--+...+.-.++|++|.+.|..+.+.. ..+..+|.-+.- ++..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 56667899999999999755311 11223344455666778899999999999999763 224445544333 3445
Q ss_pred cccc-------ccchhhhhhhhh
Q 046446 219 NEIS-------LNSLPSFTVHER 234 (244)
Q Consensus 219 ~g~~-------~~a~~~~~~~~~ 234 (244)
.|+. ++|.+.|...+.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 6777 677777766554
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.071 Score=39.14 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC--CCccHHhHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA--ADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSC 106 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 106 (244)
...|+..+..+ +.|++..|...|....+.... -....+..|..++...|++++|..+|..+.+.- .+--+..+-.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 44677777655 667899999999988886321 234456678999999999999999999887753 1223466777
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccC
Q 046446 107 LIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
|..+..+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888999999999999998876
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.061 Score=41.66 Aligned_cols=99 Identities=18% Similarity=0.076 Sum_probs=74.2
Q ss_pred ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 046446 99 LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLI 178 (244)
Q Consensus 99 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 178 (244)
.-..+++.+..+|.+.+++.+|+..-......+ ++|......=..++...|+++.|...|+.+.+. .|+...-..-+
T Consensus 255 ~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el 331 (397)
T KOG0543|consen 255 LKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAEL 331 (397)
T ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 345567788889999999999999998888775 667888888889999999999999999999884 46555554444
Q ss_pred HHH-HhcCCh-hHHHHHHHHHHHC
Q 046446 179 HGF-IRINEP-SKVIELLHKMKEK 200 (244)
Q Consensus 179 ~~~-~~~g~~-~~a~~~~~~~~~~ 200 (244)
..| .+..+. +...++|..|...
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444 333333 4457788888754
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.046 Score=45.46 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
....-.+..++.+.|.-++|.+.+-.... | ...+..|...++|.+|.++.++
T Consensus 852 s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 852 SELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555666665555554432211 1 2234445555555555554443
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.55 E-value=0.18 Score=36.76 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=99.6
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG--VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (244)
|-...|+..+.. .+.|++++|.+.|+.+..+- -+-...+.-.++.++.+.++++.|....++....-.......|..
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 334455555554 47899999999999998651 122345666777888899999999999999887643333344555
Q ss_pred HHHHHHcC-------CCHH---HHHHHHHhccc----CCccccHHHH------------HHHHHHHHccCChHHHHHHHH
Q 046446 107 LIDGLCKS-------GRLE---IALELFHSLPR----GVLVADVVTY------------SIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 107 ll~~~~~~-------~~~~---~a~~~~~~~~~----~~~~~~~~~~------------~~li~~~~~~~~~~~a~~~~~ 160 (244)
.|.+.+.. .+.. .|..-|+++.+ ....||...- ..+.+.|.+.|.+-.|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 55555422 2222 33333333332 2333333221 233456677777777777777
Q ss_pred HHHHcCCCCcH---hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 161 DMEENAVAPNV---ITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 161 ~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
+|.+. .+-+. ..+-.+..+|...|-.++|...-.-+..
T Consensus 192 ~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 192 EVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 77765 22222 2344455667777777776665554443
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.13 Score=37.87 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc---cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-c-cccHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL---DIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-L-VADVVTYS 140 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~ 140 (244)
...|+.-+..+ +.|++..|...|....+.. |- ....+--|..++...|++++|..+|..+.+.- - +--+..+-
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 34677666654 6678999999999998753 22 23334448899999999999999998887542 1 11246777
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc
Q 046446 141 IMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
-|.....+.|+.++|..+|+++.+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888999999999999998875
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.48 E-value=0.13 Score=34.15 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
...++..+.+.+.......+++.+...+ +.+...++.++..|++.+ .++....++. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHH
Confidence 3456666666677777777777777665 356667777777777653 3344444442 1 122333446666677
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046446 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI-NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218 (244)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (244)
.+-++++..++..+.. +...+..+... ++++.|.+.+.+- -+...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 7777777777665532 22233333333 6677777666541 145566666665543
No 235
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.44 E-value=0.17 Score=35.15 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT--RTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
.+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455555566666666666666665554333222 234445555555555555555555543
No 236
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.23 Score=38.81 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHhcccCCccccHHHH-------------HHHHHHHHccCChHHHHHHHHHHHH---cCCCCcHhHHHHH
Q 046446 114 SGRLEIALELFHSLPRGVLVADVVTY-------------SIMIHGLYNDGQMDKAHDLFLDMEE---NAVAPNVITFGTL 177 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~li~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l 177 (244)
.++.+.|...|++....+ |+...- ..=.+-..+.|++..|.+.+.+.+. ....|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 445566666666655543 333221 1112334567888888888888764 2345566677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhccccccchhhhhhhhh
Q 046446 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIV---SIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
..+..+.|+..+|+.-.++.... |..-. -.-..++...+++++|.+.|+...+
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888888888887776653 32221 1222244445667777777765544
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.40 E-value=0.11 Score=39.85 Aligned_cols=227 Identities=11% Similarity=0.026 Sum_probs=136.2
Q ss_pred hhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC--CC---CChhHHHHHHHHHHhC
Q 046446 7 CKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG--VA---ADTRTYTIFIDGLCKN 79 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~---~~~~~~~~ll~~~~~~ 79 (244)
....+.++|+..|.....+ ...--..++..+..+.++.|.+++++..--.-.+-- .. .--..|-.+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888876654 111123466677788888888887765532211110 01 1123455555555555
Q ss_pred CcHHHHHHHHHHHHHh-CCCc---cHHhHHHHHHHHHcCCCHHHHHHHHHhcccC-----CccccHHHHHHHHHHHHccC
Q 046446 80 GYIVESVELFRTLRIL-KCEL---DIQAYSCLIDGLCKSGRLEIALELFHSLPRG-----VLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~ 150 (244)
.++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+. +......++..|-+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5556666555443321 1112 2234455777888888899999988876432 11223567888999999999
Q ss_pred ChHHHHHHHHHHHH----cCCCCcHh-----HHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCC-ChhhHHHHHHHH
Q 046446 151 QMDKAHDLFLDMEE----NAVAPNVI-----TFGTLIHGFIRINEPSKVIELLHKMKE----KNVMP-DASIVSIVVDLL 216 (244)
Q Consensus 151 ~~~~a~~~~~~~~~----~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~ 216 (244)
|+++|.-+.....+ .++..-.. ....|.-++...|+...|.+..++..+ .|-++ -......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99998877665443 22221111 223344566678888888888777553 34332 234455677888
Q ss_pred Hhccccccchhhhhhhh
Q 046446 217 AKNEISLNSLPSFTVHE 233 (244)
Q Consensus 217 ~~~g~~~~a~~~~~~~~ 233 (244)
...|+.+.|..-|+..-
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 88999988877776543
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.33 E-value=0.027 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
+..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555444
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.22 E-value=0.35 Score=36.43 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=131.3
Q ss_pred hhhcCChhHHHHHHHHHHhCC--CCCCh------hhHHHHHHHHhhhc-hHHHHHHHHHHHHHc--------CCCCCh--
Q 046446 6 YCKNKEIEGALNLYSEMLSKG--IKPDV------VIHNTLFIGLFEIH-QVERAFKLFDEMQRD--------GVAADT-- 66 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~~-- 66 (244)
..+.|+++.|..++.+..... ..|+. ..|+.-.. ....+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 457899999999999987742 23332 22333333 33445 888888887776443 223332
Q ss_pred ---hHHHHHHHHHHhCCcHH---HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHH
Q 046446 67 ---RTYTIFIDGLCKNGYIV---ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140 (244)
Q Consensus 67 ---~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (244)
.++..++.+|...+..+ +|.++++.+.... +-.+..+..-+..+.+.++.+++.+++.+|...- ......+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 46777888888877655 4555666664432 3345666667788888899999999999998762 22344555
Q ss_pred HHHHHHHc--cCChHHHHHHHHHHHHcCCCCcHh-HHHHH-HH-HH--HhcCC------hhHHHHHHHHHHH-CCCCCCh
Q 046446 141 IMIHGLYN--DGQMDKAHDLFLDMEENAVAPNVI-TFGTL-IH-GF--IRINE------PSKVIELLHKMKE-KNVMPDA 206 (244)
Q Consensus 141 ~li~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l-~~-~~--~~~g~------~~~a~~~~~~~~~-~~~~~~~ 206 (244)
.++..+.. ......+...++.+....+.|... ....+ +. .+ .+.++ .+...+++....+ .+.+.+.
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55555522 233456667777766555555553 22111 11 11 12222 3444444553333 2344455
Q ss_pred hhHHHHHH-------HHHhccccccchhhhhhhh
Q 046446 207 SIVSIVVD-------LLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 207 ~~~~~l~~-------~~~~~g~~~~a~~~~~~~~ 233 (244)
.+...+.- ...+.++++.|.+.|+...
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 55444433 3455778888888887543
No 240
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.20 E-value=0.37 Score=36.58 Aligned_cols=128 Identities=13% Similarity=0.210 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhh--h----chHHHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhCCc--
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFE--I----HQVERAFKLFDEMQRDGV---AADTRTYTIFIDGLCKNGY-- 81 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~-- 81 (244)
++..++++.|.+.|++.+..+|-+....... . ....+|..+|+.|++.-. .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455566666666666665555432222211 1 234566666666666421 1233344444333 2222
Q ss_pred --HHHHHHHHHHHHHhCCCccHH--hHHHHHHHHHcCCC--HHHHHHHHHhcccCCccccHHHHHHH
Q 046446 82 --IVESVELFRTLRILKCELDIQ--AYSCLIDGLCKSGR--LEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 82 --~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
.+.++.+|+.+.+.|+..+-. ..+.++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 234455555555555433222 22222222222111 22455555666666655555444443
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.20 E-value=0.18 Score=32.85 Aligned_cols=92 Identities=18% Similarity=0.048 Sum_probs=63.6
Q ss_pred HHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHH---HHHHHHHHHHccCC
Q 046446 75 GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV---TYSIMIHGLYNDGQ 151 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~ 151 (244)
+.+..|+.+.|++.|.+....- |-....||.-..++.-.|+.++|++=+++..+..-..+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888877653 5677788888888888888888888777766542122222 23333445667788
Q ss_pred hHHHHHHHHHHHHcCC
Q 046446 152 MDKAHDLFLDMEENAV 167 (244)
Q Consensus 152 ~~~a~~~~~~~~~~~~ 167 (244)
-+.|..-|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888877776653
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.14 E-value=0.33 Score=35.47 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=104.4
Q ss_pred hhhcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-----
Q 046446 6 YCKNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK----- 78 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----- 78 (244)
-.+.|++++|.+.|+.+.... -+-...+--.++.++.+.++++.|+...++..+.-......-|..-|.+.+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 357899999999999998762 2234455666778888999999999999998876333233344444444432
Q ss_pred --CCcHHHHHHHH---HHHHHh----CCCccHHhH------------HHHHHHHHcCCCHHHHHHHHHhcccCCcccc--
Q 046446 79 --NGYIVESVELF---RTLRIL----KCELDIQAY------------SCLIDGLCKSGRLEIALELFHSLPRGVLVAD-- 135 (244)
Q Consensus 79 --~~~~~~a~~~~---~~~~~~----~~~~~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 135 (244)
..|...+.+.+ +.+.+. ...+|...- ..+.+.|.+.|.+..|..-+++|.+. .+-+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 23444444444 444432 112222211 33556788999999999999998876 2222
Q ss_pred -HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 136 -VVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 136 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
....-.+..+|...|-.++|...-.-+...
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 334556678888999999998877666553
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.2 Score=42.65 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=55.6
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPD--VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
|+.+.+...++-|+.+-+. .+..++ ..........+.+.|++++|...|-+-... +.|+ .++.-|....
T Consensus 341 L~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 3445555556666554322 221121 112222333344556666666666544432 2221 2334444444
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcc
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (244)
+......+++.+.+.|. .+...-..|+.+|.+.++.++-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555555666665554 344444556666666666555555444444
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.11 E-value=0.22 Score=33.04 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGV--AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
.|..-.. ..+.|++++|.+.|+.+..+-. +-...+--.++.+|.+.+++++|...+++.++....-...-|...+.+
T Consensus 13 ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3444333 4467788888888888777621 112344556777788888888888888888776533223345545555
Q ss_pred HHc
Q 046446 111 LCK 113 (244)
Q Consensus 111 ~~~ 113 (244)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 443
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.09 E-value=0.15 Score=38.06 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCChhhHHH
Q 046446 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE-----KNVMPDASIVSI 211 (244)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 211 (244)
.++..++..+...|+++.+.+.++++..... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3556677777778888888888888776543 3777888888888888888888888887764 478888777766
Q ss_pred HHHHH
Q 046446 212 VVDLL 216 (244)
Q Consensus 212 l~~~~ 216 (244)
..+..
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.08 E-value=0.12 Score=38.51 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCcHhHHH
Q 046446 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE-----NAVAPNVITFG 175 (244)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~ 175 (244)
..++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4456778888999999999999999998875 67899999999999999999999999988764 68888888777
Q ss_pred HHHHH
Q 046446 176 TLIHG 180 (244)
Q Consensus 176 ~l~~~ 180 (244)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.27 Score=41.88 Aligned_cols=139 Identities=12% Similarity=0.183 Sum_probs=76.2
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
+.+.|++++|..-|-+-... +.|+ .+|.-|........--.+++.+.+.|+. +...-..|+.+|.+.++.+..
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 45667777777666555443 1222 3444555666666666777777777665 555555677777777777666
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
.++.+... .|.. ..-....+..+.+.+-+++|..+-..... +......++ -..+++++|.+.+..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 65555433 2211 11133445555556666666655554443 122223332 2446677777766554
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.06 E-value=0.21 Score=32.54 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=29.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 202 (244)
....+.+....|+.+...+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555555431 234555555555555555555555555555555554
No 249
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.00 E-value=0.29 Score=33.53 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 53 LFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 53 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
+++.+.+.+++|+...+..+++.+.+.|.+.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444445555555555555555555555533
No 250
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.94 E-value=0.25 Score=34.37 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=45.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc--HHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCcH----hH
Q 046446 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD--VVTYSIMIHGLYNDGQMDKAHDLFLDMEEN---AVAPNV----IT 173 (244)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~----~~ 173 (244)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+...... |-.++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345555555566666666666555554432222 233445555555556666555555544321 111111 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 174 FGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
|..+ .+...|++..|.+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234567777777666543
No 251
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.94 E-value=0.51 Score=35.84 Aligned_cols=152 Identities=14% Similarity=0.201 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--CC----cHHHHHHHHHHHHHhCC---CccHHhHHHHHHHHHcCCC
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK--NG----YIVESVELFRTLRILKC---ELDIQAYSCLIDGLCKSGR 116 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 116 (244)
.+++.+.+++.|.+.|+.-+..+|-+....... .. ....+.++|+.|++... .++...+..++.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 367788889999999999888777654333333 22 34578889999998642 2445555555544 3333
Q ss_pred ----HHHHHHHHHhcccCCcccc--HHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH-hcCC-
Q 046446 117 ----LEIALELFHSLPRGVLVAD--VVTYSIMIHGLYNDGQ--MDKAHDLFLDMEENAVAPNVITFGTLIHGFI-RINE- 186 (244)
Q Consensus 117 ----~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~- 186 (244)
.+.++.+|+.+.+.|...+ ......++.......+ ...+.++++.+.+.|+++....|..+.-... ..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 3567788888887665443 2333333333332222 4478889999999999988887776644332 2222
Q ss_pred --hhHHHHHHHHHHH
Q 046446 187 --PSKVIELLHKMKE 199 (244)
Q Consensus 187 --~~~a~~~~~~~~~ 199 (244)
.+...++.+.+.+
T Consensus 235 ~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 235 KIVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHHhh
Confidence 3344444444443
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.91 E-value=0.027 Score=28.91 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=12.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
+..+...|...|++++|.++|+...+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555555555444
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.58 Score=35.02 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=98.0
Q ss_pred HHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH
Q 046446 74 DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (244)
......|+..+|...|+...... +-+...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567788999999998888765 34566677788999999999999999998876532222223233345555555555
Q ss_pred HHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhccccccc
Q 046446 154 KAHDLFLDMEENAVAP-NVITFGTLIHGFIRINEPSKVIELLHKMKEK--NVMPDASIVSIVVDLLAKNEISLNS 225 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 225 (244)
+...+-...-.. | |...-..+...+...|+.+.|.+.+-.+..+ |.. |...-..+++.+.--|..+.+
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 555555544442 4 5555566777888889999988877766654 333 556667777777776654443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.73 E-value=0.31 Score=31.77 Aligned_cols=92 Identities=16% Similarity=0.027 Sum_probs=71.1
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHH---HHHHHHHcCC
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS---CLIDGLCKSG 115 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~ 115 (244)
-+++..|+.+.|++.|.+.... .+-....||.-..++--.|+.++|+.=+++..+..-..+..... --...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567789999999999998876 44478899999999999999999999999887754333433333 3344677788
Q ss_pred CHHHHHHHHHhcccCC
Q 046446 116 RLEIALELFHSLPRGV 131 (244)
Q Consensus 116 ~~~~a~~~~~~~~~~~ 131 (244)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999988888777665
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.70 E-value=0.73 Score=35.82 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=33.0
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD 60 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 60 (244)
..+.-+.|+|+...+........ .++...+..+... ..++++++....+.....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 35667778888855555444433 2344555555433 677888888877776553
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=0.61 Score=39.29 Aligned_cols=183 Identities=10% Similarity=-0.002 Sum_probs=88.1
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc-CCCC--------ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAA--------DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCE 98 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 98 (244)
.|.+..|..+.......-.++-|...|-+...- |+.. +...-.+=+.+| -|++++|+++|-++-+++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 588888888887777777777777766544332 2211 111111222222 2678888888777755432
Q ss_pred ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-ccccHHHHHHHHHHHHccCChHHHHHHHHHHH-------------H
Q 046446 99 LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDME-------------E 164 (244)
Q Consensus 99 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------------~ 164 (244)
.+..+.+.|++-.+.++++.-.... -..-...|+.+...+.....|++|.+.+..-. .
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 3444555555555544444321110 00112234444333333333333333332111 0
Q ss_pred --------cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhh
Q 046446 165 --------NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 165 --------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
..++-+....-.+..++.+.|.-++|.+.+-+-.. |. .-+..|...+++.+|.++-+
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHH
Confidence 11233444455566666666666666655433211 11 33455555666655555544
No 257
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.66 Score=35.15 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=74.8
Q ss_pred cCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC---CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccH
Q 046446 60 DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK---CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136 (244)
Q Consensus 60 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (244)
.|.+....+...++..-....+++.++..+-.++... ..|+... .++++.+.+ -+.++++.++..-.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3556666777777777777788888888877776431 1222222 223333333 4567888899988999999999
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
.+++.++..+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999998888776643
No 258
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.59 E-value=0.34 Score=40.27 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=53.1
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHh-----------HHHHHH
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI-----------TFGTLI 178 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~ 178 (244)
.+.+...+.-|-++|..|-.. ..+++.....++|++|..+-+...+ ..||++ -|...-
T Consensus 756 ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred HHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHH
Confidence 333444455555555554432 3456777888999999888876554 233322 245556
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 046446 179 HGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
.+|.+.|+-.+|..+++++....
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhhh
Confidence 78889999999999999987543
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.49 E-value=0.57 Score=33.21 Aligned_cols=221 Identities=17% Similarity=0.062 Sum_probs=129.0
Q ss_pred ChhHHHHHHHHHHhCCCC-CChhhHHHHHHHHhhhchHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhCCcHHHHHHH
Q 046446 11 EIEGALNLYSEMLSKGIK-PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
....+...+......... .....+......+...+.+..+...+...... ........+......+...+....+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555444211 12456666666677777777777777766652 2334555666666777777777788888
Q ss_pred HHHHHHhCCCccHHhHHHHHH-HHHcCCCHHHHHHHHHhcccCCc--cccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 89 FRTLRILKCELDIQAYSCLID-GLCKSGRLEIALELFHSLPRGVL--VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+......
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 87777644222 222222233 67778888888888887754211 012334444444466677888888888777764
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 166 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 22113556666777777777788888887777665321 23334444444445555566655555443
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.28 E-value=0.064 Score=26.13 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.9 Score=34.08 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=95.3
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHH
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 118 (244)
......|++.+|..+|+...+.... +...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456778999999999998886433 456667788999999999999999998765432122222223344444444444
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhcCC
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAPNVITFGTLIHGFIRINE 186 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~ 186 (244)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.. -.-|...-..++..+.--|.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 444444444443 3367777888889999999999988877766432 12245556666666665553
No 262
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.26 E-value=0.6 Score=32.03 Aligned_cols=135 Identities=16% Similarity=0.073 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 16 LNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
.+..+.+.+.+++|+...+..++..+.+.|++... .++.+.++-+|+......+-.+.. ....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 45566667789999999999999999999987654 456666777787776655544433 233344443333322
Q ss_pred CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 96 KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 96 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
= ...+..+++.+...|++-+|.++.+...... ......++.+..+.+|...-..+++-..+
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 1134567788888999999999988764432 11224456666666666665555555544
No 263
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.31 Score=36.76 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=69.4
Q ss_pred CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHH
Q 046446 26 GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD---GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102 (244)
Q Consensus 26 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (244)
|.+.+..+...++.......+++.++.++-+++.. ...|+... .+.++.+.+ -++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 44555666666666666667788888777766543 11122222 233333333 36778888888888888888888
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 103 AYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887776544
No 264
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.18 E-value=0.28 Score=29.94 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555554443
No 265
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.16 E-value=0.22 Score=30.71 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=21.6
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555544
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.13 E-value=0.93 Score=40.42 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh
Q 046446 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 187 (244)
+.+|..+|+|.+|+.+..++.... .--..+-..|+.-+...+++-+|-++..+.... ....+..+++...|
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHH
Confidence 344444444444444444443321 001112245555555666666666555554431 12334444555566
Q ss_pred hHHHHHHHH
Q 046446 188 SKVIELLHK 196 (244)
Q Consensus 188 ~~a~~~~~~ 196 (244)
++|.++...
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666655443
No 267
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.76 Score=38.87 Aligned_cols=115 Identities=11% Similarity=0.133 Sum_probs=79.0
Q ss_pred CCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHH
Q 046446 63 AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 63 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
....-+.+--+.-+...|...+|.++-.+.+ -|+...|..-+.+++..+++++-+++-+..+. +.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhH
Confidence 3344455555666777788888888777665 47888888888888888888876665554442 3456667
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
..+|.+.|+.++|.+++..... +.-...+|.+.|++.+|.++.-+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 7788888888888887755432 11456777788888877776544
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.08 E-value=0.79 Score=32.46 Aligned_cols=194 Identities=19% Similarity=0.106 Sum_probs=138.3
Q ss_pred hhhhhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHH-HHHhCCc
Q 046446 4 NGYCKNKEIEGALNLYSEMLSK-GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFID-GLCKNGY 81 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~ 81 (244)
..+...+++..+...+...... ........+......+...+++..+...+.........+ ......... .+...|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGD 145 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCC
Confidence 4556678888888888877652 224556667777777888888999999999888754443 222333333 7889999
Q ss_pred HHHHHHHHHHHHHhCC--CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccc-cHHHHHHHHHHHHccCChHHHHHH
Q 046446 82 IVESVELFRTLRILKC--ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
++.+...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...++++.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHH
Confidence 9999999999865321 1234444445555778899999999999988764 22 467788888889999999999999
Q ss_pred HHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 159 FLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 159 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
+....... |+ ...+......+...+..+.+...+.+.....
T Consensus 225 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 225 YEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99888642 33 3444455555556777899998888877653
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.00 E-value=0.59 Score=30.57 Aligned_cols=61 Identities=5% Similarity=0.062 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
+...+.....+|+-++..+++.++.+ +-.+++...-.+..+|.+.|+..++-+++....++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33344444555555555555555443 22344445555555555555555555555444443
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.95 E-value=0.08 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 174 FGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
|..|...|.+.|++++|.+++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666633
No 271
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.92 E-value=0.39 Score=29.37 Aligned_cols=60 Identities=3% Similarity=0.082 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 49 RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 49 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
++.+-++.+....+.|++.+..+.+++|-+.+|+..|.++++-.+... ..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344444555555556666666666666666666666666666554321 123334544443
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.89 E-value=0.75 Score=31.21 Aligned_cols=51 Identities=20% Similarity=0.121 Sum_probs=23.8
Q ss_pred hCCcHHHHHHHHHHHHHhCCCccHHh-HHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 78 KNGYIVESVELFRTLRILKCELDIQA-YSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
+.++.+++..++..+.-.. |.... -..-...+...|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455555555555554432 22111 111223344555666666666665544
No 273
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=2.2 Score=36.32 Aligned_cols=115 Identities=7% Similarity=0.026 Sum_probs=87.6
Q ss_pred CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 046446 98 ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177 (244)
Q Consensus 98 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 177 (244)
.....+.+--+.-+...|+..+|.++-.+++ .||...|-.-+.+++..+++++.+++-+..+ .+..|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3444455666667778899999999988887 4788889999999999999998777665443 35668888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhh
Q 046446 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (244)
+.+|.+.|+.++|..++-+.... .-.+.+|.+.|++.+|.+.--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999887654221 1577889999998888766543
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.81 E-value=2.1 Score=35.90 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHH---HhhhchHHHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHhCC-
Q 046446 12 IEGALNLYSEMLSKGIKPDVVIHNTLFIG---LFEIHQVERAFKLFDEMQR-------DGVAADTRTYTIFIDGLCKNG- 80 (244)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~- 80 (244)
...|.+.++.....|. .........+.. +....+.+.|+.+|+.+.+ .| .+....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 5678888888887762 222222222222 3355789999999998877 44 3446667777777643
Q ss_pred ----cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc-CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH--ccCChH
Q 046446 81 ----YIVESVELFRTLRILKCELDIQAYSCLIDGLCK-SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY--NDGQMD 153 (244)
Q Consensus 81 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~ 153 (244)
+.+.|+.++....+.|. |+....-..+..... ..+...|.++|...-..|.. ...-+..++.... -..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 66779999999988884 565555444433333 24678999999999888732 3333333322222 345788
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046446 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 202 (244)
.|..++...-+.|.......... +..+.. ++++.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~~~-~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLLGA-FYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHccChhhHHHHHH-HHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888888888773222322222 233333 666666666666655543
No 275
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.73 E-value=0.026 Score=37.66 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=23.9
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHH
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFR 90 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 90 (244)
..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444444455555555544333344455555555555544444444444
No 276
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.63 E-value=1.7 Score=34.11 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=91.0
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhH--HHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIH--NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.-.|+++.|.+-|+-|... |..... ..|.-..-+.|..+.|..+-++.-..-. --...+...+...+..|+|+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHH
Confidence 3469999999999999974 333322 2333334467888888888887766522 245677888899999999999
Q ss_pred HHHHHHHHHHhC-CCccHHh--HHHHHHHHH---cCCCHHHHHHHHHhcccCCccccHH-HHHHHHHHHHccCChHHHHH
Q 046446 85 SVELFRTLRILK-CELDIQA--YSCLIDGLC---KSGRLEIALELFHSLPRGVLVADVV-TYSIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 85 a~~~~~~~~~~~-~~~~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~ 157 (244)
|+++++.-+... +.++..- -..|+.+-. -.-+...|...-.+..+. .||.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 999998765433 2232221 111111111 112333444433333322 33322 22233455666677777777
Q ss_pred HHHHHHHcCCCC
Q 046446 158 LFLDMEENAVAP 169 (244)
Q Consensus 158 ~~~~~~~~~~~p 169 (244)
+++.+.+....|
T Consensus 285 ilE~aWK~ePHP 296 (531)
T COG3898 285 ILETAWKAEPHP 296 (531)
T ss_pred HHHHHHhcCCCh
Confidence 777666654333
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.62 E-value=2.5 Score=37.90 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=46.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCcHhH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcc
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEENAVAPNVIT--FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (244)
+.+|...|+|.+|+.+...+... -+... -..|+.-+...++.-+|-++..+.... ....+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 45555556666666555544321 11111 145666667777777777776665442 123445666777
Q ss_pred ccccchhhhhhhhhhh
Q 046446 221 ISLNSLPSFTVHERQE 236 (244)
Q Consensus 221 ~~~~a~~~~~~~~~~~ 236 (244)
.+++|+.+.....+.+
T Consensus 1041 ~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1041 EWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHHHHHhcccch
Confidence 7777777666555433
No 278
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.60 E-value=2.1 Score=34.94 Aligned_cols=180 Identities=13% Similarity=0.042 Sum_probs=107.1
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
.|....-+++..+++...+.-+..+..+|..-| -+...|..++.+|... ..+.-..+++++.+..+ .+.+.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 345556667777777777777777777777754 3566777777877777 44677777777777654 2334344444
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCcc-----ccHHHHHHHHHHHHccCChHHHHHHHHHHHH-cCCCCcHhHHHHHHHHHH
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLV-----ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE-NAVAPNVITFGTLIHGFI 182 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 182 (244)
..|-+ ++.+.+..+|......-++ .-...|.-+...- ..+.+..+++...+.. .|...-...+.-+..-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 6666666666665433111 1233555555432 3456666666666553 333334455556666777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046446 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 183 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
...++.+|++++..+.+..-+ |...-..++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 788888888888877665422 444444444433
No 279
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.51 E-value=0.65 Score=28.74 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046446 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 152 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-.+.+ +.+....|..+++-+
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 3356666777777777888888888888888888888888888877654 222333676666644
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.48 E-value=0.024 Score=37.82 Aligned_cols=128 Identities=14% Similarity=0.173 Sum_probs=80.8
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
+++.+.+.+.+..+...++.+...+...+....+.++..|++.+..+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5778888999999999999999876567788999999999999877888877761 122333466777777777
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (244)
++++.-++.++....- .+..+...++++.|.++..+ .++...|..++..+...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 7777766665432211 00112233344444422221 1346677777777665544
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=1.4 Score=32.29 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH-----hCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC---CccccHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRI-----LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG---VLVADVVTYS 140 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 140 (244)
+..+-+.+.+...+++|-..+.+-.. ......-..|-+.|-.|.-..++..|.++++...+. .-+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33444455555555555444433211 111112234566666777788999999999985443 2344677888
Q ss_pred HHHHHHHccCChHHHHHHH
Q 046446 141 IMIHGLYNDGQMDKAHDLF 159 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~ 159 (244)
.|+.+|- .|+.+++..++
T Consensus 233 nLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHhc-cCCHHHHHHHH
Confidence 8888874 57777776655
No 282
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=2 Score=33.93 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=81.3
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH--HHhhhchHHHHHHHHHHHHHcCCCCChhHHHHH----------
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFI--GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF---------- 72 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------- 72 (244)
++.-.|++++|.+.--..++.. ....+...++ ++.-.++.+.+...|++.... .|+...-...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHH
Confidence 3444566666666665555542 1112222222 233345666777777666553 3333221111
Q ss_pred ---HHHHHhCCcHHHHHHHHHHHHHhC---CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc-HHHHHHHHHH
Q 046446 73 ---IDGLCKNGYIVESVELFRTLRILK---CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD-VVTYSIMIHG 145 (244)
Q Consensus 73 ---l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 145 (244)
.+-..+.|.+..|.+.|.+.+... ..++...|........+.|+.++|+.--+.....+ +. ...+..-..+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c 330 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANC 330 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHH
Confidence 122345677777777777766532 33455556666666777777777776666655542 11 1122222344
Q ss_pred HHccCChHHHHHHHHHHHHc
Q 046446 146 LYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~ 165 (244)
+...++|++|.+-++...+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44566777777777765543
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.38 E-value=2.2 Score=34.23 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=87.3
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCC------hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH--HH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAAD------TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG--LC 112 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~ 112 (244)
+-+.+++.++.++|.+..+.. ..+ ....+.++++|... +.+.....+....+.. | ...|-.+..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 345688999999999887762 222 23345677887764 5666666666665542 2 2233333332 34
Q ss_pred cCCCHHHHHHHHHhcccC--Cccc------------cHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCCcHhHH
Q 046446 113 KSGRLEIALELFHSLPRG--VLVA------------DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA----VAPNVITF 174 (244)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~ 174 (244)
+.+.+.+|.+.+..-... +..| |...=+..+..+...|++.++..+++.+...= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888877665543 2111 11222556677788999999999998877543 33578888
Q ss_pred HHHHHHHHhc
Q 046446 175 GTLIHGFIRI 184 (244)
Q Consensus 175 ~~l~~~~~~~ 184 (244)
+.++-.+.++
T Consensus 171 d~~vlmlsrS 180 (549)
T PF07079_consen 171 DRAVLMLSRS 180 (549)
T ss_pred HHHHHHHhHH
Confidence 8877776654
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.37 E-value=1 Score=30.54 Aligned_cols=112 Identities=16% Similarity=0.045 Sum_probs=66.5
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCccccHHHHH-HHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYS-IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 187 (244)
..-...++.+++..++..+.-. .|...... .-...+...|++.+|.++|+++.+.. |....-..|+..|....+-
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 3345677899999999988765 34432222 22344568899999999999987653 4444445555555544333
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchh
Q 046446 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227 (244)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (244)
..-...-.++.+.+-.|+ +. .+++.+....+...|..
T Consensus 94 ~~Wr~~A~evle~~~d~~--a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPD--AR-ALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCCChH--HH-HHHHHHHHhccccchhh
Confidence 333344455666653333 32 45666666555544443
No 285
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.35 E-value=0.96 Score=30.06 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=26.5
Q ss_pred HhCCcHHHHHHHHHHHHHhC--CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 77 CKNGYIVESVELFRTLRILK--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.+.|++++|.+.|+.+..+- -+-...+--.|+.+|.+.+++++|...++++.+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555555555555431 0122333444555555555555555555555443
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.28 E-value=0.079 Score=25.48 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=8.9
Q ss_pred cHHhHHHHHHHHHcCCCHHHH
Q 046446 100 DIQAYSCLIDGLCKSGRLEIA 120 (244)
Q Consensus 100 ~~~~~~~ll~~~~~~~~~~~a 120 (244)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444443
No 287
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.88 E-value=1.5 Score=32.74 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=77.9
Q ss_pred hhcCChhHHHHHHHHHHhC-----CC-CCC-------hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSK-----GI-KPD-------VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI 73 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~-----~~-~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 73 (244)
.-..||..|++.-++-.+. +. .++ ...+..-|.+++..++|.+++...-+.-+..-...+.+....|
T Consensus 46 vV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI 125 (309)
T PF07163_consen 46 VVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 3455667776666654332 01 111 1223445788999999999988876665543344556677778
Q ss_pred HHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHH-----cCCCHHHHHHHH
Q 046446 74 DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC-----KSGRLEIALELF 124 (244)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~ 124 (244)
-.|++.+.+..+.++-..-.+..-..+..-|.+++..|. =.|.+++|+++.
T Consensus 126 LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 889999999999888876665432334444777666554 469999999887
No 288
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.63 E-value=1.3 Score=31.27 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhccccccc
Q 046446 155 AHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK---NVMPDASIVSIVVDLLAKNEISLNS 225 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 225 (244)
|.+.|-.+...+..-++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+.+.|
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444443333333333333333333 34445555555444432 2244455555555555555554443
No 289
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.60 E-value=3.4 Score=33.77 Aligned_cols=165 Identities=13% Similarity=0.008 Sum_probs=121.6
Q ss_pred CCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHH
Q 046446 63 AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 63 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
..|.....+++..+++...+.-++.+..+|...| -+...|..++.+|... ..+.-..+|+++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4466777889999999999999999999999876 4788899999999998 557788899988887532 34444444
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCc------HhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEENAVAPN------VITFGTLIHGFIRINEPSKVIELLHKMKEK-NVMPDASIVSIVVDL 215 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 215 (244)
...|- .++...+..+|..+...= .|. ...|..+... -..+.+....+...+... |...-...+.-+-..
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44444 488899999998877542 221 2345555442 245777788877777654 555566677778889
Q ss_pred HHhccccccchhhhhhhhhh
Q 046446 216 LAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~ 235 (244)
|....++.+++++++.+.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 99999999999999865543
No 290
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.59 E-value=3.4 Score=33.63 Aligned_cols=75 Identities=16% Similarity=0.106 Sum_probs=54.3
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhC-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc-HHHHHHHHHH
Q 046446 71 IFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD-VVTYSIMIHG 145 (244)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 145 (244)
.+..++-+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+-.+...+.+ ...|+..+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 45556667899999999999997653 223455778899999999999999999999765443222 4456655533
No 291
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.58 E-value=1.3 Score=31.30 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh---CCCccHHhHHHHHHHHHcCCCHHHHH
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL---KCELDIQAYSCLIDGLCKSGRLEIAL 121 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 121 (244)
.-+.|.+.|-++...+.--++.....|...|. ..|.+++.+++-+..+. +-.+|+..+.+|...+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45778888888888776656666666666666 56889999999887764 23678999999999999999999885
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=93.56 E-value=3.3 Score=33.39 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=102.1
Q ss_pred hhH--HHHHHHHhhh-----chHHHHHHHHHHHHHc-CCCCC-hhHHHHHHHHHHh---------CCcHHHHHHHHHHHH
Q 046446 32 VIH--NTLFIGLFEI-----HQVERAFKLFDEMQRD-GVAAD-TRTYTIFIDGLCK---------NGYIVESVELFRTLR 93 (244)
Q Consensus 32 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 93 (244)
..| ...+++.... ...+.|+.+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555554432 3467888889888722 24444 3334333333221 234556777777788
Q ss_pred HhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---
Q 046446 94 ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN--- 170 (244)
Q Consensus 94 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--- 170 (244)
+.+ +.|..+...+..+....++++.|...|++....+ +-...+|....-.+.-.|+.++|.+.++...+. .|.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhH
Confidence 777 5788888888888888888999999999988774 223556666666677789999999999986653 233
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 171 VITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 171 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
.......+..|+.. ..+.+..+|-+
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 22333344466654 45666666543
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=93.55 E-value=3.3 Score=33.38 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHhC-CCCCCh-hhHHHHHHHHhh---------hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 12 IEGALNLYSEMLSK-GIKPDV-VIHNTLFIGLFE---------IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 12 ~~~a~~~~~~~~~~-~~~~~~-~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
.+.|..+|.+.... .+.|+- ..|..+..++.. .....+|.++-++..+.+. -|+.....+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 45788889998822 235553 334333322221 2345677777777777643 38888888888888888
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccH---HHHHHHHHHHHccCChHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV---VTYSIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~ 157 (244)
+.+.|...|++....+ |....+|......+.-.|+.++|.+.+++..+. .|.. ...-..+..|+.+ ..+.|.+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 9999999999999876 445566666666677789999999999997665 3432 2333344466654 4677777
Q ss_pred HHHH
Q 046446 158 LFLD 161 (244)
Q Consensus 158 ~~~~ 161 (244)
++-.
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 7644
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.26 E-value=3.6 Score=33.05 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=81.6
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCC------hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHH--HH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPD------VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG--LC 77 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~ 77 (244)
+.+.+++.+|..+|.+.-+.. ..+ ...-+.++++|.. ++.+.....+....+. .| ...|-.+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 456789999999999887652 222 2223456676654 4667666666666654 22 2334344333 34
Q ss_pred hCCcHHHHHHHHHHHHHh--CCC------------ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----CccccHHHH
Q 046446 78 KNGYIVESVELFRTLRIL--KCE------------LDIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VLVADVVTY 139 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 139 (244)
+.+++..|.+.+..-... +.. ++...=+..++++...|++.++..+++++... ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667788887776655433 211 12222355677778888888888888776543 233567777
Q ss_pred HHHHHHHH
Q 046446 140 SIMIHGLY 147 (244)
Q Consensus 140 ~~li~~~~ 147 (244)
+.++-.++
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 76444443
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.12 E-value=0.34 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555566666666666666655544
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.10 E-value=0.17 Score=24.31 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHhCCcHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666666666666666654
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=2.1 Score=29.65 Aligned_cols=139 Identities=15% Similarity=0.144 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHH-hHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ-AYSCL 107 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 107 (244)
+...|...+. +.+.+..++|+.-|.++.+.|...=+. .--.......+.|+...|...|.++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455655555 456678889999999988876542221 12233455677899999999999887654333332 11222
Q ss_pred --HHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 046446 108 --IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169 (244)
Q Consensus 108 --l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 169 (244)
.-.+..+|.+++...-++-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22356788899988888887766644445566777777888999999999998877543333
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.74 E-value=0.4 Score=23.78 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=11.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHH
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444445555555555555555443
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=2.4 Score=29.38 Aligned_cols=140 Identities=10% Similarity=0.079 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHH-hHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHH-HHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQ-AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVV-TYSIM 142 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 142 (244)
+...|..-++ +++.+..++|+.-|..+.+.|...-+. .-..........|+-..|...|.+.-...-.|-.. -.-.|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4556665555 356678899999999999877532221 12223345678899999999999988765444332 11222
Q ss_pred --HHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 046446 143 --IHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 143 --i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
.-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++..|..+|.++....-.|.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 233557899999998888776554444444455676777899999999999999887654553
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.44 E-value=3.6 Score=30.94 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCccHHhHHHHHHHHHcCCC--HHHHHHHHHhcc-cCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCcHh
Q 046446 97 CELDIQAYSCLIDGLCKSGR--LEIALELFHSLP-RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-AVAPNVI 172 (244)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~ 172 (244)
+-.|..+...+++......+ ...-.++.+-+. ..+..++..+...++..++..+++.+..++++..... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 33456666666666654211 111222222222 2223566777777888888888888888887766543 4555777
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCCChhhHHHHHHHHH
Q 046446 173 TFGTLIHGFIRINEPSKVIELLHK-----MKEKNVMPDASIVSIVVDLLA 217 (244)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 217 (244)
.|..+|......|+..-...+..+ +.+.++..+...-..+-+.+.
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 788888888888887666555544 223355555555555544443
No 301
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=3 Score=30.38 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHc--CCCCc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccc-
Q 046446 150 GQMDKAHDLFLDMEEN--AVAPN---VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL- 223 (244)
Q Consensus 150 ~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 223 (244)
.+++.|+..|+..-+. |-..+ ...+.-+...-...+++.+|+.+|++.....+.-+..-| .+=..+.+.|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy-s~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY-SAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh-HHHHHHHHHHHHhH
Confidence 4566666666554431 11111 222333344445678899999999998776543232222 2333444444432
Q ss_pred ---cchhhhhhhhhhhcccc
Q 046446 224 ---NSLPSFTVHERQEEVDE 240 (244)
Q Consensus 224 ---~a~~~~~~~~~~~~~~~ 240 (244)
+.+..-..+++-...+|
T Consensus 207 ~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDP 226 (288)
T ss_pred hcccHHHHHHHHHHHHhcCC
Confidence 22333344444444444
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.32 E-value=0.47 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=9.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHH
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
|..+...|...|++++|...|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 333333444444444444444433
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.19 E-value=5.5 Score=32.42 Aligned_cols=120 Identities=9% Similarity=0.085 Sum_probs=81.4
Q ss_pred hcCChhHHH-HHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 8 KNKEIEGAL-NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 8 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
..|+...|- +++.-+......|+....... .+...|.++.+...+...... +.....+..++++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 346665554 455555555334554444443 356779999999988777654 4556778889999999999999999
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
.+-+-|....++ ++..........-..|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999988876653 33333333333445577889999998876554
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.15 E-value=0.67 Score=21.83 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 305
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.52 E-value=4.8 Score=30.35 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhC-C-cHHHHHHHHHHHHH-hCCCccHHhHHHHHHHHHcCCCHHHHH
Q 046446 46 QVERAFKLFDEMQR-DGVAADTRTYTIFIDGLCKN-G-YIVESVELFRTLRI-LKCELDIQAYSCLIDGLCKSGRLEIAL 121 (244)
Q Consensus 46 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~ 121 (244)
...+|+.+|+.... ..+--|..+...+++..... + ....--++.+-+.. .+-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 23555788888888887762 2 22333334444433 234688888899999999999999999
Q ss_pred HHHHhcccC-CccccHHHHHHHHHHHHccCChHHHHHHHHH-----HHHcCCCCcHhHHHHHHHHH
Q 046446 122 ELFHSLPRG-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-----MEENAVAPNVITFGTLIHGF 181 (244)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~~~ 181 (244)
++++..... +..-|...|...|......|+..-...+.++ +++.++..+...-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999987765 5566889999999999999999887777765 23455555555555544443
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.48 E-value=3 Score=27.98 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=27.0
Q ss_pred hCCcHHHHHHHHHHHHHhCC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 78 KNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
..++.+++..+++.|.-... .+...++. ...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 35666666666666654320 11222222 23345566677777777666665
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.35 E-value=5 Score=30.28 Aligned_cols=164 Identities=11% Similarity=0.106 Sum_probs=101.6
Q ss_pred hhhchHHHHHHHHHHHHHcC--CCCCh-----hHHHHHHHHHHhCC-cHHHHHHHHHHHHHh----C----CCcc-----
Q 046446 42 FEIHQVERAFKLFDEMQRDG--VAADT-----RTYTIFIDGLCKNG-YIVESVELFRTLRIL----K----CELD----- 100 (244)
Q Consensus 42 ~~~~~~~~a~~~~~~m~~~~--~~~~~-----~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 100 (244)
.+.|+.+.|..++.+....- ..|+. .++..+.......+ +++.|...+++..+. + ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999887643 23332 12223333344556 888888877765432 1 1222
Q ss_pred HHhHHHHHHHHHcCCCHH---HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 046446 101 IQAYSCLIDGLCKSGRLE---IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTL 177 (244)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 177 (244)
..+...++.+|...+..+ +|.++++.+.... +-.+.++-.-+..+.+.++.+.+.+.+..|...- .-....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 345677788888877755 5666666665442 2235566666777778999999999999998752 2133445555
Q ss_pred HHHHHh--cCChhHHHHHHHHHHHCCCCCChh
Q 046446 178 IHGFIR--INEPSKVIELLHKMKEKNVMPDAS 207 (244)
Q Consensus 178 ~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~ 207 (244)
+..+.. ......+...+..+....+.|...
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 554421 233456777777776665665553
No 308
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.33 E-value=3.1 Score=27.83 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=23.7
Q ss_pred cHHhHHHHHHHHHcCCC-HHHHHHHHHhcccCCccccHHHHHHHHHHHHcc
Q 046446 100 DIQAYSCLIDGLCKSGR-LEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 100 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (244)
+...|.+++.+.....- .-.+..+|.-+++.+.+++..-|..++.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34445555555544333 223444444454444455555555555555443
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.29 E-value=4.2 Score=29.35 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=80.7
Q ss_pred CCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC-CCccHHhHH
Q 046446 28 KPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK-CELDIQAYS 105 (244)
Q Consensus 28 ~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 105 (244)
.|+ +.+||.+.-.+...|+++.|.+.|+...+....-+-...|.-|..| -.|++.-|.+=+.+.-+.+ -.|-...|-
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 344 4567777777777777787777777777653332323333333222 3467776666555554433 123333333
Q ss_pred HHHHHHHcCCCHHHHHHHH-HhcccCCccccHHHHHHHHH-HHHccCChHHHHHHHHHHHHcCCCC-------cHhHHHH
Q 046446 106 CLIDGLCKSGRLEIALELF-HSLPRGVLVADVVTYSIMIH-GLYNDGQMDKAHDLFLDMEENAVAP-------NVITFGT 176 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~p-------~~~~~~~ 176 (244)
-+.. ..-++.+|..-+ ++.... |..-|...|- .|...=.. ..+++.+... ... =+.||-.
T Consensus 174 Yl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~-a~~n~~~Ae~LTEtyFY 242 (297)
T COG4785 174 YLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE---ETLMERLKAD-ATDNTSLAEHLTETYFY 242 (297)
T ss_pred HHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH---HHHHHHHHhh-ccchHHHHHHHHHHHHH
Confidence 2222 223455554433 333332 3333433332 22211111 1223333221 111 1346666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 177 LIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
+..-+...|+.++|..+|+-....+
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHh
Confidence 7777777888888888887766553
No 310
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.84 E-value=2.8 Score=27.20 Aligned_cols=40 Identities=13% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
++.+....+.|++......+++|.+.+++..|.++|+-.+
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444555555555555555555555555554443
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.60 E-value=1 Score=21.02 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
+..+...+...|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444555555555444443
No 312
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=90.54 E-value=0.86 Score=35.95 Aligned_cols=133 Identities=11% Similarity=-0.023 Sum_probs=89.3
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHH----HcCCC-CChhHHHHHHHHHHhCCcHHHHHHHHHHHHH----hC-CCccH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQ----RDGVA-ADTRTYTIFIDGLCKNGYIVESVELFRTLRI----LK-CELDI 101 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 101 (244)
..|..|.+.|.-.|+++.|+...+.-. +-|-. .....+..+.+++.-.|.++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666667788998888766432 22322 2345677888888889999999998877543 22 11234
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHhccc----C-CccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 102 QAYSCLIDGLCKSGRLEIALELFHSLPR----G-VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 102 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
...-+|.+.|.-..++++|+.++.+-.. . ...-....+-+|..+|...|..++|+.+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4456677788777888888887765321 1 1123466788888999999999998887766543
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.12 E-value=9.6 Score=32.00 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=65.8
Q ss_pred HhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHH
Q 046446 77 CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 156 (244)
.+.|+.+.|.++..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3556666666655443 3566788888888888888888888876654 345556666677776666
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
.+-....+.|.. |....++...|+++++.+++..
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 666666555532 4445566677888888777654
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.00 E-value=2.7 Score=30.28 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC--ccccHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV--LVADVVTYSIMIHG 145 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~ 145 (244)
|.+.-++.+.+.+...+++...++-.+.+ |.+...-..++..++-.|++++|..-++-.-... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888889999999988777765 5667777888999999999999988777654431 23445666666653
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.82 E-value=1.9 Score=25.36 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=24.1
Q ss_pred hhchHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhCCcHHHHHHH
Q 046446 43 EIHQVERAFKLFDEMQRDGVAAD--TRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
..++-+.|+..|+...+.-..|. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665555422221 13455556666666666655554
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.67 E-value=1.3 Score=20.68 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 173 TFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
.|..+...+...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355556666667777777777766654
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.67 E-value=0.73 Score=20.39 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=5.9
Q ss_pred HHHHcCCCHHHHHHH
Q 046446 109 DGLCKSGRLEIALEL 123 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~ 123 (244)
..+...|++++|..+
T Consensus 9 ~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 9 RALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHcCCHHHHHHH
Confidence 333334444444333
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.67 E-value=1.3 Score=22.81 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=11.9
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHH
Q 046446 72 FIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 319
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.66 E-value=5.9 Score=33.77 Aligned_cols=87 Identities=7% Similarity=0.002 Sum_probs=37.3
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHh---C
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADTRTYTIFIDGLCK---N 79 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~---~ 79 (244)
..+.-.|+++.|++.+-+ ..+...+..++...+..|.-.+-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345566777777777655 2222445555555554443322222111 1111110 01112456777777776 4
Q ss_pred CcHHHHHHHHHHHHHh
Q 046446 80 GYIVESVELFRTLRIL 95 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~ 95 (244)
.++..|.+++--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5777888877766554
No 320
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=89.55 E-value=3.9 Score=27.44 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
+...+.+.|.+++.. -..++..+...++.-.|.++++++.+.+...+..|....++.+...|-.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344455666665443 3445566666666677777777777766666666666666777666654
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.51 E-value=4.7 Score=29.13 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC--CCccHHhHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK--CELDIQAYSCLIDG 110 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 110 (244)
|.+..+..+.+.+.+.+++...++-.+.. +.|..+-..+++.++-.|+|++|..-++-.-+.. ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566778888899999999988766653 3466677788999999999999988777665542 23556677777765
Q ss_pred H
Q 046446 111 L 111 (244)
Q Consensus 111 ~ 111 (244)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.42 E-value=1.3 Score=20.66 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666666666666666554
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.22 E-value=1.3 Score=20.37 Aligned_cols=19 Identities=11% Similarity=0.476 Sum_probs=8.3
Q ss_pred HhhhchHHHHHHHHHHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQR 59 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~ 59 (244)
+.+.|++++|.+.|+++.+
T Consensus 10 ~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3334444444444444443
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.93 E-value=13 Score=31.33 Aligned_cols=145 Identities=13% Similarity=0.021 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHH----H-HHhCCcHHHHHHHHHHHHH-------hCCCccHHhHHHHHHHHHcC
Q 046446 47 VERAFKLFDEMQRDGVAADTRTYTIFID----G-LCKNGYIVESVELFRTLRI-------LKCELDIQAYSCLIDGLCKS 114 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 114 (244)
...+.++++...+.|.. ..-..+.. + +....|.+.|+..++...+ .+ ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 56788888888777543 22222222 2 4456799999999998876 44 334556677777764
Q ss_pred C-----CHHHHHHHHHhcccCCccccHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH----hc
Q 046446 115 G-----RLEIALELFHSLPRGVLVADVVTYSIMIHGLYN-DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI----RI 184 (244)
Q Consensus 115 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~ 184 (244)
. +.+.|..++...-..| .|+....-..+..... ..+...|.++|...-+.|..+ .+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcC
Confidence 3 6788999999988887 4555554444444443 356789999999998887542 2222222222 23
Q ss_pred CChhHHHHHHHHHHHCC
Q 046446 185 NEPSKVIELLHKMKEKN 201 (244)
Q Consensus 185 g~~~~a~~~~~~~~~~~ 201 (244)
.+.+.|..++++..+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 47788999999998888
No 325
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.66 E-value=4.9 Score=26.13 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=35.3
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
+..+.+..+...++.|++......++++.+.+|+..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455566666777788888888888888888888888888887764
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.43 E-value=1 Score=23.10 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=12.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK 25 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~ 25 (244)
..+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34555556666666655555543
No 327
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.98 E-value=12 Score=29.78 Aligned_cols=173 Identities=12% Similarity=0.055 Sum_probs=95.9
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh---------CCCcc
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVA---ADTRTYTIFIDGLCKNGYIVESVELFRTLRIL---------KCELD 100 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 100 (244)
.+..+...|...|+++.|++.|.+.+.- .. -....|-.+|..-.-.|+|..+..+..+..+. -+++-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 5667788888999999999999986653 22 23445666667777788888887777776553 13334
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHhcccCC------ccccHHHHHHHHHHHHccCChHHHHHH-----HHHHHHcCCCC
Q 046446 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRGV------LVADVVTYSIMIHGLYNDGQMDKAHDL-----FLDMEENAVAP 169 (244)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~-----~~~~~~~~~~p 169 (244)
...+..+...+.+ .++.|.+.|-...... +.|...+....+.+..--++-+--..+ |+.+.+ .
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 4445555554444 6676666654433221 234333333444444433332222222 222222 2
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCChhhHHHHHH
Q 046446 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEK-----NVMPDASIVSIVVD 214 (244)
Q Consensus 170 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 214 (244)
.+..+..+...| .+++...+++++++... -+.|...+.-.+|+
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 333344444433 36777788887776643 24555555544444
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=17 Score=31.53 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=80.6
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKP---DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
+-+.+.+.+++|+++-+..... .| -...+...|..+...|++++|-...-.|... +..-|-.-+..++..+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 4466778888888877655443 44 3446677788888888888888877777654 4444555455554444
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhc------------------ccCCccccHHHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL------------------PRGVLVADVVTYSIM 142 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~~~~l 142 (244)
....... -+.......+...|..++..+.. .+...-.+..++- .+. .-+...-..|
T Consensus 438 ~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~L 511 (846)
T KOG2066|consen 438 QLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVL 511 (846)
T ss_pred ccchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHH
Confidence 4332211 11111111344556656555554 2222211111111 111 1122333457
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~ 163 (244)
+..|...+++..|..++-..+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc
Confidence 788888888888888776554
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.90 E-value=6.3 Score=26.50 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=37.4
Q ss_pred HcCCCHHHHHHHHHhcccCC-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 112 CKSGRLEIALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
...++.+++..++..|.-.. -.+...++... .+...|++++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34788899999988876542 02233344444 4567899999999999998764
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.56 E-value=10 Score=28.53 Aligned_cols=119 Identities=12% Similarity=0.041 Sum_probs=76.6
Q ss_pred HhhhchHHHHHHHHHHHHHc-----CC-CCC-------hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRD-----GV-AAD-------TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~-----~~-~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (244)
+.-..++..|++..++-.+. .. .|+ ...+..=|.+++..++|.+++...-+.-+..-+....+....
T Consensus 45 LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC 124 (309)
T PF07163_consen 45 LVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC 124 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 33456777777777665443 01 111 122334478899999999998876655443223344556667
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc-----cCChHHHHHHH
Q 046446 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN-----DGQMDKAHDLF 159 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~ 159 (244)
|-.|.+.+++..+.++-..-.+..-.-+...|.+++..|.. .|.+++|+++.
T Consensus 125 ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 77899999999888887765543212234457777766655 69999998887
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.52 E-value=8.9 Score=29.83 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=40.0
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 59 (244)
+-|.+.|.+++|++.|....... +.++.++..-..+|.+...+..|..-......
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35788899999999998877652 33777787777788888888776665555443
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.34 E-value=2 Score=20.06 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=12.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
|..+...|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555555444
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.29 E-value=7.3 Score=32.66 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=65.9
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 190 (244)
..+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 345667777766655443 567788999999999999999888876654 45566666667776655
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhh
Q 046446 191 IELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTV 231 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (244)
..+-....+.|.. +.-.-+|...|+++++++++..
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555532 2333456667777777766643
No 334
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=9.8 Score=27.97 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=82.2
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhCCcHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIH-NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT-YTIFIDGLCKNGYIV 83 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~ 83 (244)
|.....++.|+..|.+.+.. .|+..+| +.=+.++.+..+++.+..=-.+..+ +.||..- ...+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 55567888999988777765 6777554 5566667778889888777666665 4566543 345566677788899
Q ss_pred HHHHHHHHHHH----hCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhc
Q 046446 84 ESVELFRTLRI----LKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 84 ~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
.|+..+.+..+ ..+++....+..|..+--..-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99998888743 345566677777777766666666666665543
No 335
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.19 E-value=18 Score=30.93 Aligned_cols=185 Identities=14% Similarity=0.070 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHh-CCCCCC--hhhHHHHHHHHh-hhchHHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhCCcHH
Q 046446 13 EGALNLYSEMLS-KGIKPD--VVIHNTLFIGLF-EIHQVERAFKLFDEMQRDGVAADT-----RTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 13 ~~a~~~~~~~~~-~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~ 83 (244)
..|+..++-+.+ ..++|. ..++-.+...+. ...+++.|...+.+.....-.++- ..-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 345666666663 333333 234445555554 567899999999877554322222 12234566666666655
Q ss_pred HHHHHHHHHHHhC----CCccHHhHHHH-HHHHHcCCCHHHHHHHHHhcccCC---ccccHHHHHHHHHHHH--ccCChH
Q 046446 84 ESVELFRTLRILK----CELDIQAYSCL-IDGLCKSGRLEIALELFHSLPRGV---LVADVVTYSIMIHGLY--NDGQMD 153 (244)
Q Consensus 84 ~a~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~~~~~ 153 (244)
|...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+...- ..|...++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888766532 22333344444 333333478998999888765331 2444555555555544 456677
Q ss_pred HHHHHHHHHHHcC---------CCCcHhHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 046446 154 KAHDLFLDMEENA---------VAPNVITFGTLIHGFI--RINEPSKVIELLHKMK 198 (244)
Q Consensus 154 ~a~~~~~~~~~~~---------~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 198 (244)
++.+.++.+.... ..|-..+|..++..++ ..|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777764322 2345667777776554 5677767777666654
No 336
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.04 E-value=3 Score=21.84 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=21.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046446 182 IRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214 (244)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (244)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666667777777777777666666665554
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.90 E-value=12 Score=30.58 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=38.0
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 190 (244)
+...|+++.+...+...... +.....+...+++.....|++++|..+-..|....+. ++.......-..-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34445555555555443322 1123334455555555555566655555555544333 222222222222233444555
Q ss_pred HHHHHHHH
Q 046446 191 IELLHKMK 198 (244)
Q Consensus 191 ~~~~~~~~ 198 (244)
.-.++++.
T Consensus 411 ~~~wk~~~ 418 (831)
T PRK15180 411 YHYWKRVL 418 (831)
T ss_pred HHHHHHHh
Confidence 54444443
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.77 E-value=9.4 Score=27.29 Aligned_cols=89 Identities=16% Similarity=0.006 Sum_probs=52.9
Q ss_pred HHHhCCcHHHHHHHHHHHHHhCCCcc-----HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc
Q 046446 75 GLCKNGYIVESVELFRTLRILKCELD-----IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (244)
-+...|++++|..-|.+....- ++. ...|..-..++.+.+.++.|..--....+.+ +........-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 3456677777777777776653 221 2234444556677777777776666666553 11222333334567777
Q ss_pred CChHHHHHHHHHHHHc
Q 046446 150 GQMDKAHDLFLDMEEN 165 (244)
Q Consensus 150 ~~~~~a~~~~~~~~~~ 165 (244)
..+++|++=|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777764
No 339
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.58 E-value=2.2 Score=23.79 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=10.4
Q ss_pred HHHHHHhCCcHHHHHHHHHHHH
Q 046446 72 FIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
++.++...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555544443
No 340
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.20 E-value=4 Score=34.38 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046446 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 183 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
+.|++.+|.+.+-.+....+.|...-...|.++.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ----------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 4578888888887777777788776666665543
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.13 E-value=13 Score=28.26 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=52.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCChhhHH
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE-----KNVMPDASIVS 210 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 210 (244)
+++.....|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.+..-++.+.+ .|+..+...+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 44556678888999999999888877653 34677777888888888987777777766643 37776665544
No 342
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=86.12 E-value=14 Score=28.48 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhCC----CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHH
Q 046446 82 IVESVELFRTLRILKC----ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (244)
.+.|.+.|+.....+. ..++..-..++....+.|..+.-..+++..... ++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776422 345556666777777888766666666666654 367777888888888888888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCh--hHHHHHHHH
Q 046446 158 LFLDMEENAVAPNVITFGTLIHGFIRINEP--SKVIELLHK 196 (244)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~a~~~~~~ 196 (244)
+++.....+..++... ..++.++...+.. +.+.+.+..
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 8888877542233333 3344444423333 555555543
No 343
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=85.89 E-value=3.2 Score=21.72 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=20.8
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFID 74 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 74 (244)
+.|-..++..++++|.+.|+..+...+..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45566666666777766676666666666554
No 344
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.77 E-value=16 Score=28.84 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhC-----CCccHHhHHHHHHHHHcCCCHHHHHHHHHhccc----CCccccHH--
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILK-----CELDIQAYSCLIDGLCKSGRLEIALELFHSLPR----GVLVADVV-- 137 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-- 137 (244)
.-++..++...+-++++++.|+...+.. ......++-.|-..|.+..++++|.-+..+..+ .++..-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 4456677777888899999988776532 123455688888899999999888766554321 22111111
Q ss_pred ---HHHHHHHHHHccCChHHHHHHHHHHH----HcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 138 ---TYSIMIHGLYNDGQMDKAHDLFLDME----ENAVAP-NVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 138 ---~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
....|.-++...|..-.|.+..++.. +.|-.| -......+...|...|+.+.|+.-|++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22334456677788888887777654 334222 12334456677888899998888777654
No 345
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.78 E-value=20 Score=35.28 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=62.6
Q ss_pred HHHHhhhchHHHHHHHHHHH----HHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 38 FIGLFEIHQVERAFKLFDEM----QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
..+-.+.+.+.+|.-.+++- .+. ......+..+...|+..++++.+.-+...-.. .|+ .+ .-|.....
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 33445667777777777763 111 11223344444477777777776666653110 122 22 23334555
Q ss_pred CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
.|++..|...|+.+.+.+ ++...+++-++......|.++......+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 677777777777777664 233555665555555555655555544433
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.70 E-value=12 Score=26.74 Aligned_cols=88 Identities=18% Similarity=0.103 Sum_probs=48.4
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADT-----RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 115 (244)
+...|++++|..-|...... +++.. ..|..-..++.+.+.++.|+.-....++.+ +....+...-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 44566666666666666654 22221 233333445556666666666666665554 222333333345666666
Q ss_pred CHHHHHHHHHhcccC
Q 046446 116 RLEIALELFHSLPRG 130 (244)
Q Consensus 116 ~~~~a~~~~~~~~~~ 130 (244)
.+++|+.=|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666776666666655
No 347
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.42 E-value=21 Score=29.32 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccCC-ccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 107 LIDGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
+..++-+.|+.++|.+.|+++.+.. ..-+......|+.++...+.+.++..++..-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444445555666666555554331 1112334455555555555666555555554
No 348
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=83.53 E-value=8.2 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 20 SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 20 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
+.+.+.|++++. .-..++..+.+.++.-.|.++++.+.+.+...+..|...-++.+...
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 334444444332 22233344444444455555555555554444444433333444433
No 349
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=83.24 E-value=4.4 Score=30.71 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=29.4
Q ss_pred cccHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHH
Q 046446 133 VADVVT-YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG 175 (244)
Q Consensus 133 ~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 175 (244)
.|+..+ |+..|....+.||+++|++++++.++.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345444 4577888888888888888888888877664444443
No 350
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.22 E-value=15 Score=26.67 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=94.1
Q ss_pred CCCC-hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-ccccHHHH
Q 046446 62 VAAD-TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-LVADVVTY 139 (244)
Q Consensus 62 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 139 (244)
+.|+ +.+||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +--.|++.-|.+=+...-+.+ -.|-...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 4454 56788888888889999999999998887764333333343333 334578888877666655443 12323334
Q ss_pred HHHHHHHHccCChHHHHHHHH-HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCChhhHHHH
Q 046446 140 SIMIHGLYNDGQMDKAHDLFL-DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV------MPDASIVSIV 212 (244)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~l 212 (244)
--++. ..-++.+|..-+. +... .|..-|...|-.+.- |+.. ...+++++....- ..=..||--|
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 33332 3445666654443 3332 355556555444332 3222 2233444433211 0113577788
Q ss_pred HHHHHhccccccchhhhhhhhh
Q 046446 213 VDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+.+...|+.++|...|+....
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHH
Confidence 8889999999999999986644
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.08 E-value=33 Score=30.40 Aligned_cols=222 Identities=11% Similarity=0.015 Sum_probs=116.8
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCCh----h---hHHHHHHH-HhhhchHHHHHHHHHHHHHc----CCCCChhHHHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDV----V---IHNTLFIG-LFEIHQVERAFKLFDEMQRD----GVAADTRTYTIF 72 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~li~~-~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l 72 (244)
......++++|..+..++...-..|+. . .++.+-.. ....|+++.+.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345678889999998887765222221 1 23333222 23457888888888776654 223345566777
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHhCCCccHHh---HHHHH--HHHHcCCCHH--HHHHHHHhccc-----CC-ccccHHHH
Q 046446 73 IDGLCKNGYIVESVELFRTLRILKCELDIQA---YSCLI--DGLCKSGRLE--IALELFHSLPR-----GV-LVADVVTY 139 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll--~~~~~~~~~~--~a~~~~~~~~~-----~~-~~~~~~~~ 139 (244)
..+..-.|++++|..+..+..+..-..+... |..+. ..+...|+.. +.+..|..... .. ..+-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7778888999999998887766532233333 33332 2344556322 22223322211 11 01223445
Q ss_pred HHHHHHHHccCChHHHHHHHHH----HHHcCCCCcHhHH--HHHHHHHHhcCChhHHHHHHHHHHHCCC----CCChhhH
Q 046446 140 SIMIHGLYNDGQMDKAHDLFLD----MEENAVAPNVITF--GTLIHGFIRINEPSKVIELLHKMKEKNV----MPDASIV 209 (244)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~----~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~ 209 (244)
..++.++.+ .+.+..-... -......|-.... ..|+......|+.++|...+.++..... .++...-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555555 3332222222 1122222222222 2567778889999999999998875433 3333333
Q ss_pred HHHHHHH--Hhccccccchhhh
Q 046446 210 SIVVDLL--AKNEISLNSLPSF 229 (244)
Q Consensus 210 ~~l~~~~--~~~g~~~~a~~~~ 229 (244)
...++.. ...|+.+.+....
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHH
Confidence 3333332 3345555554433
No 352
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=82.81 E-value=13 Score=31.67 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccCC--ccccHHHHHHHHHHHHccCChHH------HHHHHHHHHHcCCCCcHhHHHHH
Q 046446 106 CLIDGLCKSGRLEIALELFHSLPRGV--LVADVVTYSIMIHGLYNDGQMDK------AHDLFLDMEENAVAPNVITFGTL 177 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~p~~~~~~~l 177 (244)
+|+.+|...|++..+..+++.+...+ -..-...+|..|+...+.|.++- |.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999998876543 23345678888888888887642 333333322 44577777777
Q ss_pred HHHHHh
Q 046446 178 IHGFIR 183 (244)
Q Consensus 178 ~~~~~~ 183 (244)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.57 E-value=6.2 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=8.5
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 046446 104 YSCLIDGLCKSGRLEIALE 122 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~ 122 (244)
+..++.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 354
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=82.41 E-value=1.7 Score=28.48 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=21.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGF 181 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 181 (244)
..|.-.+|..+|..|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345666777778888887777765 66666543
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.38 E-value=21 Score=27.68 Aligned_cols=142 Identities=9% Similarity=-0.002 Sum_probs=97.6
Q ss_pred CCChhHHHHHHHHHHhCCc------------HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 63 AADTRTYTIFIDGLCKNGY------------IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 63 ~~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
+-|..+|-.++..--..-. .+.-+.++++..+.+ +.+...+..+|..+.+..+.++..+-|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4478888888865443221 345667888888875 577888888999999999999999999998876
Q ss_pred CccccHHHHHHHHHHHHc---cCChHHHHHHHHHHHHc------CC------CC--c---HhHHHHHHHHHHhcCChhHH
Q 046446 131 VLVADVVTYSIMIHGLYN---DGQMDKAHDLFLDMEEN------AV------AP--N---VITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 131 ~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~------~~------~p--~---~~~~~~l~~~~~~~g~~~~a 190 (244)
. +-+...|...|..... .-.++....+|.+.... +. .+ . ...+..+...+...|-.+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 4 3367888888876654 34677888888765431 21 00 0 12233334444578999999
Q ss_pred HHHHHHHHHCCC-CCCh
Q 046446 191 IELLHKMKEKNV-MPDA 206 (244)
Q Consensus 191 ~~~~~~~~~~~~-~~~~ 206 (244)
..+++-+.+.++ .|..
T Consensus 174 va~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 174 VALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHcCCccc
Confidence 999999888765 4443
No 356
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.22 E-value=36 Score=30.20 Aligned_cols=232 Identities=18% Similarity=0.126 Sum_probs=123.4
Q ss_pred hhhhhcCChhHHHHHHHHHHhC---C-----------CCCChhhHH----HHHHH--HhhhchHHHHHHHHHHHHHcCCC
Q 046446 4 NGYCKNKEIEGALNLYSEMLSK---G-----------IKPDVVIHN----TLFIG--LFEIHQVERAFKLFDEMQRDGVA 63 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~---~-----------~~~~~~~~~----~li~~--~~~~~~~~~a~~~~~~m~~~~~~ 63 (244)
......|+++.|.++++..... + .-|+....+ .+..+ .....++.+|..+..++...-..
T Consensus 368 ~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~ 447 (894)
T COG2909 368 DHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKA 447 (894)
T ss_pred HHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCc
Confidence 3455678888888888776211 1 012222211 11122 23346788888888887655233
Q ss_pred CChh-------HHHHHHH-HHHhCCcHHHHHHHHHHHHHh----CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 64 ADTR-------TYTIFID-GLCKNGYIVESVELFRTLRIL----KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 64 ~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
|+.. .++.+-. .....|+++.+.++.+..... -..+....+..+..+..-.|++++|..+..+..+..
T Consensus 448 ~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 448 PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3221 2333321 223468889999888776653 223456667777888888999999999887765542
Q ss_pred ccccHH---HHHHHH--HHHHccCChHH--HHHHHHHHHHcC---C---CCcHhHHHHHHHHHHhc-CChhHHHHHHHHH
Q 046446 132 LVADVV---TYSIMI--HGLYNDGQMDK--AHDLFLDMEENA---V---APNVITFGTLIHGFIRI-NEPSKVIELLHKM 197 (244)
Q Consensus 132 ~~~~~~---~~~~li--~~~~~~~~~~~--a~~~~~~~~~~~---~---~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~ 197 (244)
...+.. .|..+. ..+...|+... .+..|....... . .+-..++..++.++.+. +...++..-+.--
T Consensus 528 ~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~ 607 (894)
T COG2909 528 RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVG 607 (894)
T ss_pred HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhh
Confidence 222333 333332 34555674333 233333332210 0 12234455555555552 1222222222222
Q ss_pred HHCCCCCChhhHH--HHHHHHHhccccccchhhhhhhhhh
Q 046446 198 KEKNVMPDASIVS--IVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 198 ~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
......|-...+. .|++.....|+.++|...+..++.-
T Consensus 608 ~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 608 SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222233222222 6778888899999998888877653
No 357
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.81 E-value=14 Score=26.02 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 167 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
..|+..+|..++.++...|+.++|.++..++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578888888888888888888888887777654
No 358
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.40 E-value=16 Score=25.60 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhCCCCCChhhH---HHHHHHHhhhchHHHHHHHHHHHHHc-----CCCCC-hhHHHHHHHHHHhCC--
Q 046446 12 IEGALNLYSEMLSKGIKPDVVIH---NTLFIGLFEIHQVERAFKLFDEMQRD-----GVAAD-TRTYTIFIDGLCKNG-- 80 (244)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~ll~~~~~~~-- 80 (244)
++.|.+.++.-.... +.|...+ ...+.-+++..+..++.+++++.... .+.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455566555533332 3344433 33333344333333444444433221 23454 356666666665432
Q ss_pred --c-------HHHHHHHHHHHHHhCCCccHHhHHHHHHHHH
Q 046446 81 --Y-------IVESVELFRTLRILKCELDIQAYSCLIDGLC 112 (244)
Q Consensus 81 --~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 112 (244)
+ +++|.+.|++.... .|+..+|+.-+....
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 2 33344444444433 577777777776664
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.39 E-value=18 Score=29.02 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=38.5
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhC
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVI--HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR--TYTIFIDGLCKN 79 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~ 79 (244)
...++.|+.+-+.. +.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHC
Confidence 34455666544444 445666665432 23344445566666533 3444555554432 112234444566
Q ss_pred CcHHHHHHHHH
Q 046446 80 GYIVESVELFR 90 (244)
Q Consensus 80 ~~~~~a~~~~~ 90 (244)
|+.+.+..+++
T Consensus 79 g~~~~v~~Ll~ 89 (413)
T PHA02875 79 GDVKAVEELLD 89 (413)
T ss_pred CCHHHHHHHHH
Confidence 77666555444
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.38 E-value=13 Score=26.28 Aligned_cols=33 Identities=21% Similarity=0.084 Sum_probs=20.0
Q ss_pred CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 98 ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 98 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.|+..+|..++.++...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666666666666666666666666655543
No 361
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.90 E-value=14 Score=24.77 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCC-----ccccHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCcHhHHHHH
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPRGV-----LVADVVTYSIMIHGLYNDGQ-MDKAHDLFLDMEENAVAPNVITFGTL 177 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l 177 (244)
.|+++.-....+++.....+++.+.... -..+...|..++.+.++..- .--+..+|.-+++.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455554455555555555555442110 01234456666666655444 33455666666666666677777777
Q ss_pred HHHHHhc
Q 046446 178 IHGFIRI 184 (244)
Q Consensus 178 ~~~~~~~ 184 (244)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766543
No 362
>PRK09687 putative lyase; Provisional
Probab=80.88 E-value=22 Score=26.95 Aligned_cols=208 Identities=12% Similarity=0.079 Sum_probs=121.7
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchH----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV----ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
.++...|. +.+...+..+... +|...-...+.++++.|+. +++...+..+... .|+..+-...+.++...
T Consensus 45 ~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 45 RVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHR 118 (280)
T ss_pred HHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcc
Confidence 34445554 4455555555543 4667777777778777763 5677777776443 45666666666666554
Q ss_pred CcH-----HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC-ChH
Q 046446 80 GYI-----VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG-QMD 153 (244)
Q Consensus 80 ~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~ 153 (244)
+.. ..+.+.+..... .++..+-...+.++...++ +++...+-.+... ++...-...+.++.+.+ +..
T Consensus 119 ~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 119 CKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred cccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCH
Confidence 321 223333333332 2355555667777777776 4566666666653 35556666666666543 234
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
.+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+. .....+.++.+.|.. +++..+..+.
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 55555555553 35777777778888887774 45555555555432 234567777777775 5666666655
Q ss_pred h
Q 046446 234 R 234 (244)
Q Consensus 234 ~ 234 (244)
.
T Consensus 262 ~ 262 (280)
T PRK09687 262 Y 262 (280)
T ss_pred h
Confidence 4
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.73 E-value=28 Score=29.46 Aligned_cols=100 Identities=15% Similarity=-0.054 Sum_probs=54.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHH
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
.|+...|...+.........-+......|.....+.|....|..++.+..... ...+-++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35566666666555443211122233344444455556666666666655543 33455666667777777777777777
Q ss_pred HHHHHHhCCCccHHhHHHHHHH
Q 046446 89 FRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
|++..+.. +.+...-+.|...
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHHH
Confidence 77666554 3444444444443
No 364
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=80.73 E-value=14 Score=28.27 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----------CCCHHHH
Q 046446 51 FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK----------SGRLEIA 120 (244)
Q Consensus 51 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~~~~~~a 120 (244)
.++|+.+...++.|.-.++.-+.-.+++.=.+.+++.+++.+.... .-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4677888888888888888877777788778888888888887532 225556655553 5788888
Q ss_pred HHHHHhccc
Q 046446 121 LELFHSLPR 129 (244)
Q Consensus 121 ~~~~~~~~~ 129 (244)
.++++.-..
T Consensus 338 mkLLQ~yp~ 346 (370)
T KOG4567|consen 338 MKLLQNYPT 346 (370)
T ss_pred HHHHhcCCC
Confidence 777766543
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.49 E-value=11 Score=23.42 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
.+.+.|++++|..+.+.+ ..||...|..+-. .+.|..+....-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555554433 2355555544422 24454454444444444443
No 366
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.43 E-value=5.3 Score=22.27 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=6.9
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 046446 178 IHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~ 196 (244)
|.++...|++++|.+++++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333333333333333333
No 367
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.07 E-value=18 Score=28.20 Aligned_cols=89 Identities=13% Similarity=-0.013 Sum_probs=55.6
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCH
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 117 (244)
+-|.+.|.+++|++.|..-... .| |++++..-..+|.+...+..|+.=.......+ ..-..+|+.-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4566788999999998876654 44 78888888888888888877766665555433 12233344444444444555
Q ss_pred HHHHHHHHhcccC
Q 046446 118 EIALELFHSLPRG 130 (244)
Q Consensus 118 ~~a~~~~~~~~~~ 130 (244)
.+|.+=++.....
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 5555555554443
No 368
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=80.06 E-value=18 Score=30.92 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=52.0
Q ss_pred ChhhhhhhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHhhhchHH------HHHHHHHHHHHcCCCCChhHHHHH
Q 046446 1 ILINGYCKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVE------RAFKLFDEMQRDGVAADTRTYTIF 72 (244)
Q Consensus 1 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 72 (244)
+|+.+|...|++-++.++++.+... |-+.=...+|..|+...+.|.++ .+.+.+++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 3778999999999999999999876 33334557888888888888754 3444444333 44577777777
Q ss_pred HHHHH
Q 046446 73 IDGLC 77 (244)
Q Consensus 73 l~~~~ 77 (244)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 66543
No 369
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.59 E-value=21 Score=26.47 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=15.5
Q ss_pred hhhhhhhcCChhHHHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEM 22 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~ 22 (244)
++++|...|++..|++-|+.=
T Consensus 16 i~rl~l~~~~~~~Av~q~~~H 36 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRAH 36 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHHH
Confidence 456778888888888777653
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.09 E-value=26 Score=26.73 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhc-------cc-------------------CCcccc
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL-------PR-------------------GVLVAD 135 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~-------------------~~~~~~ 135 (244)
..+|+++|.-+.+.. -...+-+.++.++-...+..+|...+... .. .+..-|
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 467899999887754 22344455667777767766666555422 11 124456
Q ss_pred HHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCc-----------------HhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 136 VVTYSIMIHGLYN-DGQMDKAHDLFLDMEENAVAPN-----------------VITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 136 ~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
..-|...+....+ +...+++.+++...+. +.-|+ ..+++...+.|..+|.+.+|.++.++.
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6677777766554 3456777777665532 12221 223455667888999999999999998
Q ss_pred HHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 198 KEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
...+ +.+...+..|+..+...|+--.+..-++.+.+.-
T Consensus 306 ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 306 LTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred hhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 8764 4578888899999999999888888887776543
No 371
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.91 E-value=21 Score=25.43 Aligned_cols=130 Identities=10% Similarity=0.001 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHH--HHHHHHHcCCCHHHHHHHHHhcccCCccccHHHH---
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS--CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY--- 139 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 139 (244)
-+..|..++..... +.+ +.....+.+...+-...-.++. .+...+...+++++|+..++..... |....+
T Consensus 53 AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 53 ASAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 34456666655542 233 4555555555543111222222 2345677788888888888876644 122222
Q ss_pred --HHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 140 --SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 140 --~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
-.|.+.....|.+|+|+.+++.....+.. ......--..+...|+-++|..-|+...+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33445666778888888888776654322 1222333456777888888888888887765
No 372
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.65 E-value=21 Score=25.39 Aligned_cols=85 Identities=8% Similarity=0.038 Sum_probs=38.8
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhH-----HHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAY-----SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
+...+++++|+.-++..... |....+ -.|.+.....|.+++|+..++.....+. .......-..++...|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 44455555555555554432 111122 2223344455555555555555554321 1222333334555555
Q ss_pred ChHHHHHHHHHHHHc
Q 046446 151 QMDKAHDLFLDMEEN 165 (244)
Q Consensus 151 ~~~~a~~~~~~~~~~ 165 (244)
+-++|..-|....+.
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 555555555555544
No 373
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.35 E-value=1.9 Score=25.30 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 046446 176 TLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212 (244)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (244)
+++..+.++.-.++|+++++-|.+.| ..+...-+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45566666777777888887777776 3344444433
No 374
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.32 E-value=1.7 Score=28.43 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhcccCCccccHHHHHHHHHHH
Q 046446 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (244)
-|.-.+|..+|+.|.+.|-+|| .|+.|+...
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3556678888999988887776 577776543
No 375
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.88 E-value=21 Score=25.06 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcccCCcccc--HHH-----HHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 046446 117 LEIALELFHSLPRGVLVAD--VVT-----YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184 (244)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 184 (244)
++.|+.+|+.+.+.--.|. ... -...+-.|.+.|.+++|.++++..... |+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 5667777766655421111 111 122334566667777777766666542 4444444444444443
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=77.85 E-value=9 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=27.3
Q ss_pred CCChhH-HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhH
Q 046446 63 AADTRT-YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY 104 (244)
Q Consensus 63 ~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (244)
.||..+ |+..|....+.||+++|++++++.++.|..--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345544 457777777777777777777777777754333333
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.45 E-value=29 Score=26.41 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=67.5
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCCChh-------HHHHHHHHHHhCCcHHHHHHHHHHH----HHhCCCccHHhHHHH
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAADTR-------TYTIFIDGLCKNGYIVESVELFRTL----RILKCELDIQAYSCL 107 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l 107 (244)
+-..+.+++++|+..+.++...|...|.. +...+...|...|+....-+..... .+..-+.......+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 34455667777777777777766655543 3344566666666655544443332 222222333444555
Q ss_pred HHHHHcC-CCHHHHHHHHHhcccCCcccc-----HHHHHHHHHHHHccCChHHHHHHHHH----HHHcCCCCcHhH
Q 046446 108 IDGLCKS-GRLEIALELFHSLPRGVLVAD-----VVTYSIMIHGLYNDGQMDKAHDLFLD----MEENAVAPNVIT 173 (244)
Q Consensus 108 l~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~p~~~~ 173 (244)
+..+... ..++....+.....+...... ...=.-++..+.+.|.+.+|+.+... +++..-+|+..+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 5554432 234444444443332211101 11123456777778888887776544 334444454443
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.44 E-value=18 Score=26.78 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHH----hC-CCccHHhHHHHHHHHHcCCCHHHHHHH
Q 046446 49 RAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI----LK-CELDIQAYSCLIDGLCKSGRLEIALEL 123 (244)
Q Consensus 49 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 123 (244)
.|...|+..... ..-......+...|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+
T Consensus 163 ~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 163 KAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444444443331 22333444677888999999999999988743 23 345667778888888999998887776
Q ss_pred HHhc
Q 046446 124 FHSL 127 (244)
Q Consensus 124 ~~~~ 127 (244)
--++
T Consensus 241 ~leL 244 (247)
T PF11817_consen 241 SLEL 244 (247)
T ss_pred HHHH
Confidence 5444
No 379
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=77.22 E-value=22 Score=27.14 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046446 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
++..+.+.++..+....++.+.. ...-...++.+...|++..|.+++.+..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444444444444444444432 2233344455555666666666665544
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.97 E-value=23 Score=24.86 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHH---HHHHHHhCCcHHHH-------HHHHHHHHHhCCCccHHhHHHHHHHHHcCCC
Q 046446 47 VERAFKLFDEMQRDGVAADTRTYTI---FIDGLCKNGYIVES-------VELFRTLRILKCELDIQAYSCLIDGLCKSGR 116 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~~~a-------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 116 (244)
++.|.+.++.-...+ +.|...++. .+.-+++.....++ +.-|++..... |-...++..+..+|...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Confidence 455666665544332 335544433 33333333333344 44444444443 2334677777777765442
Q ss_pred -----------HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 046446 117 -----------LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167 (244)
Q Consensus 117 -----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (244)
+++|...|+...+. .|+...|+.-+.... +|-++..++.+++.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 45555556655554 688888888777663 35666666665543
No 381
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=76.92 E-value=32 Score=26.50 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHhcCChhHH
Q 046446 171 VITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 171 ~~~~~~l~~~~~~~g~~~~a 190 (244)
..+|.-|+.+++..|+.+..
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34577788888888877643
No 382
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.35 E-value=30 Score=25.93 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHH----HHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERA----FKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
+++++++|++++..-.. .+.+.|+...| .-+.+...+.+.++|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 46777888877755322 12233333222 222333344556666655556665555443221
Q ss_pred -HHHHHHHHHHH---hC--CCccHHhHHHHHHHHHcCCCHHHHHHHH
Q 046446 84 -ESVELFRTLRI---LK--CELDIQAYSCLIDGLCKSGRLEIALELF 124 (244)
Q Consensus 84 -~a~~~~~~~~~---~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (244)
.-.++.+.+.+ .+ ..-++.....+...|.+.|++.+|+..|
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 22223333322 11 1245667778888888888888777655
No 383
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.83 E-value=47 Score=27.96 Aligned_cols=185 Identities=9% Similarity=0.017 Sum_probs=112.7
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
+..+|+.-+..-...|+.+.+.-+|++..-- +..=...|-..++-....|+.+.|..++....+--++..+.+.-.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567888888888889999998888876531 111223444444555555888888888877766544433333332333
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccH-HHHHHHHHHHHccCChHHHH---HHHHHHHHcCCCCcHhHHHHHHH-----H
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADV-VTYSIMIHGLYNDGQMDKAH---DLFLDMEENAVAPNVITFGTLIH-----G 180 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~-----~ 180 (244)
..-..|++..|..+++.+.+.- |+. ..-..-+..-.+.|+.+.+. +++........ +..+...+.- .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHH
Confidence 3455689999999999988763 443 33334455566778888777 33333332211 2222222221 1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcc
Q 046446 181 FIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220 (244)
Q Consensus 181 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (244)
+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22357888899998888775 4566677777777665544
No 384
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=75.46 E-value=12 Score=23.82 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=31.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
.++..+...+..-.|.++++.+.+.+..++..|....+..+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3445555555666677777777776666666666666677777766543
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.38 E-value=48 Score=29.71 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhccc---CCccccHHHHHHHHHHHHccCCh--HHHHHHHHHHHHcCCCCcHhHHHH--
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPR---GVLVADVVTYSIMIHGLYNDGQM--DKAHDLFLDMEENAVAPNVITFGT-- 176 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~-- 176 (244)
|..|+..|...|+.++|+++|.+... .....-...+..++..+.+.+.. +-.+++-+-.......-....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046446 177 ----------LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218 (244)
Q Consensus 177 ----------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (244)
.+-.|......+.+..+++.+....-.++....+.++..|.+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
No 386
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=75.27 E-value=24 Score=24.38 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=34.2
Q ss_pred ccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 128 PRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 128 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
...|+..+. .-..++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-..+
T Consensus 18 ~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 18 AQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 344444333 2234444444455556677777777766666666665555666666665543
No 387
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=75.11 E-value=39 Score=26.71 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCcHH---HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHH
Q 046446 70 TIFIDGLCKNGYIV---ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141 (244)
Q Consensus 70 ~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (244)
..++..+...++.. +|.-+++...... +.|...--.++..|...|-.+.|...|..+.-..+..|...+..
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~ 257 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLI 257 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHH
Confidence 34455555555544 5666677766654 56777777789999999999999999999877666656554443
No 388
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=74.48 E-value=5.8 Score=25.47 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=22.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
.++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 334444444445555555555555555555555444455555544
No 389
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=74.22 E-value=13 Score=20.99 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=23.1
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 77 (244)
|....++.++..+++..-.+.++..+.+..++|. .+..+|---++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444555555555555555555555555555543 23444444344333
No 390
>PRK09462 fur ferric uptake regulator; Provisional
Probab=73.94 E-value=24 Score=23.69 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=25.9
Q ss_pred HHHHHHHHcc-CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChh
Q 046446 140 SIMIHGLYND-GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188 (244)
Q Consensus 140 ~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 188 (244)
..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3334444433 345566666666666555555555555555555555443
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.37 E-value=22 Score=29.96 Aligned_cols=103 Identities=11% Similarity=-0.137 Sum_probs=59.9
Q ss_pred CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHH
Q 046446 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI 141 (244)
Q Consensus 62 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (244)
+.|-....|...--+.-.|+...|...+.........-.-+....|.....+.|..-+|..++.+..... ...+.++..
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~ 681 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLS 681 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHh
Confidence 3444444443333333457777777776665433222222333445555555666667777766655443 234566777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
+.+++....+++.|++.|+...+.
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhc
Confidence 777888888888888888776654
No 392
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=73.32 E-value=9.9 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 15 ~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 15 GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 333444445555444444444444444444444443
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.23 E-value=46 Score=26.68 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=82.7
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC----hhHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVV--IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD----TRTYTIFIDGL 76 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~ 76 (244)
++..+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++ .|...+ ..-. +.+...
T Consensus 39 L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A 109 (413)
T PHA02875 39 IKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGM-TPLHLA 109 (413)
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCC-CHHHHH
Confidence 44555666654 444555666555432 11233445557788777655553 332211 1111 223334
Q ss_pred HhCCcHHHHHHHHHHHHHhCCCccHHh--HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHH
Q 046446 77 CKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 154 (244)
+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+++.-...+ ..|..-.+.+ ...+..|+.+
T Consensus 110 ~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~TpL-~~A~~~g~~e- 182 (413)
T PHA02875 110 TILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD-IEDCCGCTPL-IIAMAKGDIA- 182 (413)
T ss_pred HHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHH-HHHHHcCCHH-
Confidence 4556653 4445555565544321 1234455556777766555554322211 1122222233 2334455544
Q ss_pred HHHHHHHHHHcCCCCcHhH---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 046446 155 AHDLFLDMEENAVAPNVIT---FGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
+++.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..++
T Consensus 183 ---iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n 229 (413)
T PHA02875 183 ---ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCN 229 (413)
T ss_pred ---HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcc
Confidence 3444556666665432 1234443445566543 333444555444
No 394
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.12 E-value=38 Score=25.62 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=109.7
Q ss_pred cCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhhhchHHHHHHHHHHHHHc---CCC--CChhHHHHHHHHHHhCC
Q 046446 9 NKEIEGALNLYSEMLSKGIKP---DVVIHNTLFIGLFEIHQVERAFKLFDEMQRD---GVA--ADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~--~~~~~~~~ll~~~~~~~ 80 (244)
..++++|+.-|+...+..... .......+|....+.+++++.+..|+++..- .+. -+..+.|.++..-+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 457889999999988752111 1234456788889999999999999888542 111 23456677777666665
Q ss_pred cHHHHHHHHHHHHHh-----CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC-----Cc------cccHHHHHHHHH
Q 046446 81 YIVESVELFRTLRIL-----KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG-----VL------VADVVTYSIMIH 144 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~li~ 144 (244)
..+...++|+.-.+. +-..--.|-..|...|...|++.+..++++++.+. |- ..-...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555554433211 00111223355677788888888888888876532 10 112345666677
Q ss_pred HHHccCChHHHHHHHHHHHH-cCCCCcHhHHHHHHHHH-----HhcCChhHHHH
Q 046446 145 GLYNDGQMDKAHDLFLDMEE-NAVAPNVITFGTLIHGF-----IRINEPSKVIE 192 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~ 192 (244)
.|....+-.+...+++.... ....|.+..... |+-| .+.|+|++|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 88877777777777876542 223455554443 3333 24567766544
No 395
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=73.10 E-value=11 Score=24.22 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccc
Q 046446 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223 (244)
Q Consensus 175 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (244)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 3445555555556667777777777776666666666667777766553
No 396
>PRK09687 putative lyase; Provisional
Probab=72.82 E-value=39 Score=25.65 Aligned_cols=17 Identities=18% Similarity=-0.046 Sum_probs=8.4
Q ss_pred cHHHHHHHHHHHHccCC
Q 046446 135 DVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 135 ~~~~~~~li~~~~~~~~ 151 (244)
+..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444445555555554
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.80 E-value=30 Score=24.36 Aligned_cols=66 Identities=6% Similarity=0.063 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCcc--HHh-----HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 82 IVESVELFRTLRILKCELD--IQA-----YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
.+.|+.+++.+.+.--.|. ... --..+..|.+.|.+++|.+++++.... |+......-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 4667777777765432221 111 123345688888888888888887764 34444444444444433
No 398
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=72.29 E-value=28 Score=27.50 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred HHHHHHhhhc---hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHH
Q 046446 36 TLFIGLFEIH---QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105 (244)
Q Consensus 36 ~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (244)
.++..+...+ .+-+|.-+++...... +-|...--.+++.|...|-.+.|.+.|..+.-..++.|...|.
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 4444444433 3455666666666552 3344555567788888888888888888776555555544443
No 399
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=72.09 E-value=29 Score=24.03 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=28.8
Q ss_pred HHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCH
Q 046446 58 QRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117 (244)
Q Consensus 58 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 117 (244)
++.|+.++..=. .++..+...++.-.|.++++.+.+.+...+..|.-.-|..+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344554443322 33333333444555666666666655445555544445555555543
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=71.40 E-value=47 Score=25.96 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccH-----HhHHHHHHHHHcCCCHHHHHHHHHhccc-----CCccccH
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI-----QAYSCLIDGLCKSGRLEIALELFHSLPR-----GVLVADV 136 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 136 (244)
.....++...-+.+|.++|++.++++.+.-...+. ..-....+++...|+.+++.+++.+..+ .+++|++
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HH--HHHHHHHHHccCChHHHHH
Q 046446 137 VT--YSIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 137 ~~--~~~li~~~~~~~~~~~a~~ 157 (244)
.+ |..--..|-..|++....+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 401
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.39 E-value=37 Score=24.80 Aligned_cols=104 Identities=15% Similarity=0.245 Sum_probs=60.2
Q ss_pred HHHHHHHHHHh--CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH
Q 046446 68 TYTIFIDGLCK--NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 68 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (244)
.|...++++.- .+++++|.+.+-.- .+.| ....-++.++...|+.+.|+.+++...... .+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 34555666544 45666666665321 1222 222347777777888898988888876542 233334444444
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 046446 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 182 (244)
..++.+.+|..+-+...+.. ....+..++..+.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 56688888888776655421 2445555665555
No 402
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=71.05 E-value=23 Score=22.26 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=30.3
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhh--chHHHHHHHHHHHHHcCCC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI--HQVERAFKLFDEMQRDGVA 63 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~ 63 (244)
++..|...|+.++|...+.++... .-.......++..+... ..-+.+..++..+...+.-
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 456677778888888777665321 11222333333333333 2344555666666665443
No 403
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=70.65 E-value=60 Score=26.91 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhCCcHHHHHHHHHHH
Q 046446 14 GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG-LCKNGYIVESVELFRTL 92 (244)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~ 92 (244)
+...+|+..... .+.|...|...+..+-+.+.+.++..+|.+|... .+-++..|-....- |.....++.|..+|.+-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-HPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445566666554 3458999999999888888899999999999875 22234444333222 33333488888888887
Q ss_pred HHhCCCccHHhHH
Q 046446 93 RILKCELDIQAYS 105 (244)
Q Consensus 93 ~~~~~~~~~~~~~ 105 (244)
.+.+ +-++..|-
T Consensus 167 LR~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 167 LRFN-PDSPKLWK 178 (568)
T ss_pred hhcC-CCChHHHH
Confidence 7665 34444443
No 404
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.51 E-value=7.9 Score=16.68 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=11.1
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHH
Q 046446 35 NTLFIGLFEIHQVERAFKLFDEMQ 58 (244)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~ 58 (244)
..+...+...++++.|...++...
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444455555555444443
No 405
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.34 E-value=49 Score=25.71 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=91.2
Q ss_pred CCChhhHHHHHHHHhhh------------chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 28 KPDVVIHNTLFIGLFEI------------HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
+-|..+|-.++..--.. .-.+.-+.++++..+.+ +-+.......|..+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55677777777433221 23566778888887773 346677778899999999999999999999887
Q ss_pred CCCccHHhHHHHHHHHHc---CCCHHHHHHHHHhcc-------cCC---ccccHH-------HHHHHHHHHHccCChHHH
Q 046446 96 KCELDIQAYSCLIDGLCK---SGRLEIALELFHSLP-------RGV---LVADVV-------TYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 96 ~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~-------~~~---~~~~~~-------~~~~li~~~~~~~~~~~a 155 (244)
. +-+...|...|..... .-.++....+|.+.. ... ..+... .+..+.......|..+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 5 4578888888876655 224555555555432 211 011112 223333445568999999
Q ss_pred HHHHHHHHHcCC
Q 046446 156 HDLFLDMEENAV 167 (244)
Q Consensus 156 ~~~~~~~~~~~~ 167 (244)
..+++.+.+.++
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 999999887654
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.29 E-value=54 Score=26.21 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=38.1
Q ss_pred HHhhhchHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHH--hCCcHHHHHHHHHHHHHh
Q 046446 40 GLFEIHQVERAFKLFDEMQRDGVAADTR--TYTIFIDGLC--KNGYIVESVELFRTLRIL 95 (244)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 95 (244)
.+...+++..|.++++.+.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678899999999988887 555554 4455555554 356778888888877654
No 407
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=70.10 E-value=17 Score=20.29 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=6.8
Q ss_pred cCChHHHHHHHHHHH
Q 046446 149 DGQMDKAHDLFLDME 163 (244)
Q Consensus 149 ~~~~~~a~~~~~~~~ 163 (244)
.|++-+|-++++++-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 444455555554444
No 408
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=70.07 E-value=58 Score=26.51 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=62.1
Q ss_pred cCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH--------HHcCCCHHHHHHHHHhcccCC
Q 046446 60 DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG--------LCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 60 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~ 131 (244)
..+.||..+.|-+.+.++..-..+-...+|+-..+.+ .|-.+.+.++|-. -.+...-+++.++++.|...-
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4688999999988888888888888889999888876 4555555544422 124455788999999987653
Q ss_pred ccccHHHHHHHHHHHHc
Q 046446 132 LVADVVTYSIMIHGLYN 148 (244)
Q Consensus 132 ~~~~~~~~~~li~~~~~ 148 (244)
-..|+.-+-.|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 23456666666666654
No 409
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.67 E-value=83 Score=28.11 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=30.9
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhhhchHHHHHHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDV--VIHNTLFIGLFEIHQVERAFKLFDEMQ 58 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 58 (244)
..|...|++++|.++-+. .|+. .++..-...|.+.+.+..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 356777777777765422 2332 233344456777788888888888773
No 410
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.22 E-value=74 Score=27.35 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=113.0
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHH-HcCCCCC--hhHHHHHHHHHH-hCCcHHHHHHHHHHHHHhCCCccHH--
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQ-RDGVAAD--TRTYTIFIDGLC-KNGYIVESVELFRTLRILKCELDIQ-- 102 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 102 (244)
.+...|..+|..- ++.++.+. +..++|. ..++-.+...+. ...+.+.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~a---------i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIATA---------IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHHH---------HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 3455566666543 44455454 3333333 345556666665 6789999999999875543222211
Q ss_pred ---hHHHHHHHHHcCCCHHHHHHHHHhcccC----CccccHHHHHHH-HHHHHccCChHHHHHHHHHHHHcC---CCCcH
Q 046446 103 ---AYSCLIDGLCKSGRLEIALELFHSLPRG----VLVADVVTYSIM-IHGLYNDGQMDKAHDLFLDMEENA---VAPNV 171 (244)
Q Consensus 103 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~p~~ 171 (244)
.-..++..+.+.+... |...+++..+. +..+-...|..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234566777766655 88888775543 222333344444 333334489999999998876432 33444
Q ss_pred hHHHHHHHHHH--hcCChhHHHHHHHHHHHCC---------CCCChhhHHHHHHHHH--hccccccchhhhhhhh
Q 046446 172 ITFGTLIHGFI--RINEPSKVIELLHKMKEKN---------VMPDASIVSIVVDLLA--KNEISLNSLPSFTVHE 233 (244)
Q Consensus 172 ~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 233 (244)
.++-.++.+.. +.+..+.+.+.++++.... -.|-..++..+++.++ ..|++..+.+.++.+.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544 4566677777777764321 1345667777777665 4566556666555544
No 411
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=68.94 E-value=23 Score=21.34 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 52 KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 52 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
++|+-....|+..|+.+|..++....-.-.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777777766666666666667666654
No 412
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.66 E-value=26 Score=21.92 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=20.0
Q ss_pred HhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 77 CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
...|++++|..+.+.. ..||...|.+|.. .+.|..++...-+.++...|
T Consensus 50 mNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 50 MNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3444555554444433 1344444443322 23333443444444444333
No 413
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.20 E-value=54 Score=25.42 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP---NVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
...+|..++..+.+.|+++.|...+..+...+..+ .+.....-+......|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677777777777777777776666533111 233333444555566776777776666555
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.92 E-value=17 Score=19.52 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=16.0
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHcCCCCChhHH
Q 046446 37 LFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY 69 (244)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 69 (244)
+.-++.+.|+++.|.+..+.+.+. .|+..-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 334455666666666666666653 4544333
No 415
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=67.67 E-value=22 Score=20.62 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=25.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhh
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI 44 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 44 (244)
..=+.+.|..++..++... +.++..||++...+.++
T Consensus 9 emlDtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 9 EMLDTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3345677888888877653 56888999888877664
No 416
>PRK09857 putative transposase; Provisional
Probab=67.52 E-value=54 Score=25.12 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN 170 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 170 (244)
+..++......++.++..++++.+.+. .+.......++..-+...|.-+++.++...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444555555555555554443 122333344555555556666667777777777776544
No 417
>PRK09462 fur ferric uptake regulator; Provisional
Probab=67.22 E-value=35 Score=22.89 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 116 (244)
.-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44455555555544433344443334444444443
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.93 E-value=26 Score=21.20 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHhcc
Q 046446 115 GRLEIALELFHSLP 128 (244)
Q Consensus 115 ~~~~~a~~~~~~~~ 128 (244)
|+.+.|..++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33344444444333
No 419
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=66.84 E-value=26 Score=22.33 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=27.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 75 (244)
++|+.+.++...++|+++.+-|.++|-- +...-+.|-..
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEI-t~e~A~eLr~~ 104 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEI-TPEEAKELRSI 104 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556677888899999999999988743 55444444333
No 420
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=66.02 E-value=95 Score=29.07 Aligned_cols=153 Identities=12% Similarity=0.010 Sum_probs=91.0
Q ss_pred hhhchHHHHHH------HHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHH-------HHhCCCccHHhHHHHH
Q 046446 42 FEIHQVERAFK------LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL-------RILKCELDIQAYSCLI 108 (244)
Q Consensus 42 ~~~~~~~~a~~------~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ll 108 (244)
...|.+.++.+ ++......-.++....|..+...+-+.|+.++|+..-... .....+-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33455555554 5553322223345566778888888899999888765443 2222233445566666
Q ss_pred HHHHcCCCHHHHHHHHHhcccC-------CccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C--CCCcHhHH
Q 046446 109 DGLCKSGRLEIALELFHSLPRG-------VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN-----A--VAPNVITF 174 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~p~~~~~ 174 (244)
..+...+....|...+.+.... ..+|...+++.+-..+...++++.|.++++..... | -.++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 6666666777777666554321 13444555555555555668888898888877642 1 12355667
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 046446 175 GTLIHGFIRINEPSKVIELL 194 (244)
Q Consensus 175 ~~l~~~~~~~g~~~~a~~~~ 194 (244)
..+.+.+...+++..|....
T Consensus 1103 ~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 77777777777776655443
No 421
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=65.88 E-value=11 Score=17.87 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHH
Q 046446 11 EIEGALNLYSEMLSKGIKPDVVIHN 35 (244)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~~~~~~~~ 35 (244)
.+++|..+|++.... .|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 456677777776654 35555553
No 422
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.69 E-value=50 Score=24.14 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=57.2
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 190 (244)
+...+++++|.+.+-.-. +.|+- -.-++.++...|+.+.|..+++...-.. .+......++.. ..++.+.+|
T Consensus 88 ~LD~~~~~~A~~~L~~ps---~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPS---LIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HhChHhHHHHHHHhCCCC---CCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHH
Confidence 455677888888774431 22222 2247777777899999999888754221 122222333333 566888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHH
Q 046446 191 IELLHKMKEKNVMPDASIVSIVVDLLA 217 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (244)
..+-+...+.. ....+..++..+.
T Consensus 160 f~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 160 FSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHhCchhh---hHHHHHHHHHHHH
Confidence 88776665531 2455666666665
No 423
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=65.40 E-value=31 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=10.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhc
Q 046446 107 LIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~ 127 (244)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555554
No 424
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=65.12 E-value=22 Score=19.81 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=7.3
Q ss_pred hhchHHHHHHHHHHHH
Q 046446 43 EIHQVERAFKLFDEMQ 58 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~ 58 (244)
..|++-+|.++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3445555555555444
No 425
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.02 E-value=28 Score=23.16 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=42.6
Q ss_pred CCChhhHHHHHHHHhhh---chHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 28 KPDVVIHNTLFIGLFEI---HQVERAFKLFDEMQRDGVAAD--TRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
.++..+--.+.-++.+. .+..+.+.+++++.+. -.|+ .....-|.-++.+.++++.+.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45655555555555554 4566677788877762 2232 233345566778888888888888888765
No 426
>PRK09857 putative transposase; Provisional
Probab=64.66 E-value=62 Score=24.80 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (244)
+..++.-..+.++.++..++++.+.+. .+.......++..-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455555556667777777777777665 344444555677777777777788888888888887655
No 427
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.96 E-value=61 Score=24.49 Aligned_cols=191 Identities=13% Similarity=-0.022 Sum_probs=126.1
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh----hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE----IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK---- 78 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 78 (244)
...+++..+...+......+. ......+...|.. ..+...|.++|..+.+.|.. .....|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 456788888898888887542 2344444444443 45788999999987777643 344445555555
Q ss_pred CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC-------CHHHHHHHHHhcccCCccccHHHHHHHHHHHHc---
Q 046446 79 NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG-------RLEIALELFHSLPRGVLVADVVTYSIMIHGLYN--- 148 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 148 (244)
..+..+|...|++..+.|..+...+...+...|..-. +...|...+.+.-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3488999999999999885443333444555554431 3347999999888776 44455555555533
Q ss_pred -cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC---------------ChhHHHHHHHHHHHCCCCCChhhHH
Q 046446 149 -DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN---------------EPSKVIELLHKMKEKNVMPDASIVS 210 (244)
Q Consensus 149 -~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (244)
..+..+|...|...-+.|. ......+- .+...| +...+...+......+.........
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 4588999999999888775 22222222 344444 7888999999998888776666666
No 428
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=63.76 E-value=17 Score=21.09 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=24.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 183 RINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 183 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
..|+.+.+.+++++....|+.|.......+..+..+.|+.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666655555566666655554
No 429
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.46 E-value=25 Score=19.86 Aligned_cols=52 Identities=10% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC
Q 046446 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114 (244)
Q Consensus 62 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 114 (244)
+.|+...++.++..+++..-.++++..+.+..+.|. .+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 346777888999999998889999999999998884 6778887777777764
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.24 E-value=39 Score=22.02 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHh
Q 046446 84 ESVELFRTLRILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHS 126 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (244)
.+.++|+.|...|+- -....|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777788888777643 3455577777778888888888888764
No 431
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=63.04 E-value=81 Score=25.56 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhCCcHHHHHHHHHH
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRD--GVAADTRTYTIFIDGLCKNGYIVESVELFRT 91 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 91 (244)
.-.|++...-.|+.....+.++.|... |..|.-.+-.-+.-+|.-.+++.+|.+.|-.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~n 297 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLN 297 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444444444432 2222211112333344444444445444433
No 432
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.48 E-value=23 Score=30.00 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 111 (244)
..|...+..+...++.. ....+.+..+-.-.+...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34544444444333211 33344444432233445555666666666666666666666544322 233455555666
Q ss_pred HcCCCHHHHHHHHHhcc
Q 046446 112 CKSGRLEIALELFHSLP 128 (244)
Q Consensus 112 ~~~~~~~~a~~~~~~~~ 128 (244)
.+.|+...+-.+...+.
T Consensus 449 ~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLL 465 (566)
T ss_dssp H----------------
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666655555444443
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.30 E-value=33 Score=20.85 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=13.8
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHH
Q 046446 72 FIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
+.......|++++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556777777776666543
No 434
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=62.06 E-value=70 Score=24.55 Aligned_cols=112 Identities=17% Similarity=0.090 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHH
Q 046446 45 HQVERAFKLFDEMQRDGV----AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIA 120 (244)
Q Consensus 45 ~~~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 120 (244)
+-.+.|.+.|+.....+. ..++..-..++....+.|+.+.-..+++.... ..+...-..++.+.+...+.+..
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHH
Confidence 346788888888877522 34566667777778888887766666666654 34677788899999999999988
Q ss_pred HHHHHhcccCC-ccccHHHHHHHHHHHHccCC--hHHHHHHHHH
Q 046446 121 LELFHSLPRGV-LVADVVTYSIMIHGLYNDGQ--MDKAHDLFLD 161 (244)
Q Consensus 121 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~ 161 (244)
.++++.....+ ++ +... ..++.++...+. .+.+++++..
T Consensus 221 ~~~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 221 KRLLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 89999888754 33 3333 344444442333 3667666654
No 435
>PRK10941 hypothetical protein; Provisional
Probab=61.95 E-value=67 Score=24.29 Aligned_cols=74 Identities=7% Similarity=-0.074 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
....+.+-.+|.+.++++.|+++.+.+.... |.++.-+.--.-.|.+.|.+..|..=++...+. .|+...-..+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp~a~~i 254 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCchhHHHH
No 436
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.43 E-value=39 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777665
No 437
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.11 E-value=1.2e+02 Score=26.80 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=24.0
Q ss_pred HHHhhhchHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHH
Q 046446 39 IGLFEIHQVERAFKLFDEMQ-RDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~ 77 (244)
..|...|++++|+.+--... .-.+.+++..+.+++.-|.
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~i 106 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCI 106 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHH
Confidence 56777899999988754432 2235556666655554443
No 438
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=60.79 E-value=59 Score=23.24 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCCCChhhHHHHHHHHhhh----chHHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 25 KGIKPDVVIHNTLFIGLFEI----HQVERAFKLFDEMQRDGVAADTR----TYTIFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 25 ~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
.|..++...++.++..+.+. +..+-++.+=.+....++.++.. ....-+..|-+.|||...-.+|-....
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~ 79 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM 79 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh
Confidence 46778888888888777654 45566666655666666665433 233334567778888877777766543
No 439
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.77 E-value=88 Score=25.27 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=89.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC---------CCCChhHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG---------VAADTRTYTI 71 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ 71 (244)
-+.|..+|+++.|++.|.+.+.. ..+.....|-.+|..-.-.|+|..+..+..+..+.. +++-...+..
T Consensus 157 ~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ag 236 (466)
T KOG0686|consen 157 GDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAG 236 (466)
T ss_pred HHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHH
Confidence 45688899999999999996653 123345567777777777889988888777766541 2222233333
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHhC------CCc-cHHhHHHHHHHHHcCCCHHHHHH-----HHHhcccCCccccHHHH
Q 046446 72 FIDGLCKNGYIVESVELFRTLRILK------CEL-DIQAYSCLIDGLCKSGRLEIALE-----LFHSLPRGVLVADVVTY 139 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~ll~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~~~~ 139 (244)
+...+. +++..|.+.|-...... +.| |..+|. .+.+.+..++-+--.. .|+.+.+. .+..+
T Consensus 237 La~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel----~Pqlr 309 (466)
T KOG0686|consen 237 LANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLEL----EPQLR 309 (466)
T ss_pred HHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhc----ChHHH
Confidence 333333 35566555544332111 123 333343 3344444333222211 22233322 34455
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc-----CCCCcHhHHHHHHH
Q 046446 140 SIMIHGLYNDGQMDKAHDLFLDMEEN-----AVAPNVITFGTLIH 179 (244)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~ 179 (244)
..+...|. +++...+++++++... -+.|.+.+.-.+|+
T Consensus 310 ~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 55555443 5678888888877643 23455555444443
No 440
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.24 E-value=34 Score=20.31 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.2
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCC
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGV 62 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~ 62 (244)
++++.+.++.-.++|+++++-|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 456677788889999999999988874
No 441
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=60.13 E-value=59 Score=26.59 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=0.0
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG- 80 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~- 80 (244)
|+.-|...|+..+|....+++--- +-....++.+++.+.-+.|+-...+++++..-.. ...|-+.+-++|.+..
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhc
Q ss_pred -------cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC
Q 046446 81 -------YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116 (244)
Q Consensus 81 -------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 116 (244)
++..|.+.|+...+.+ ..+...|-.|-..|-..++
T Consensus 590 sl~DlsLDvPna~ekf~~~Ve~~-~~~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 590 SLPDLSLDVPNAYEKFERYVEEC-FQNGIISKQLRDLCPSRLR 631 (645)
T ss_pred cCcccccCCCcHHHHHHHHHHHH-HHcCchhHHhhhcchhhhc
No 442
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.94 E-value=1.2e+02 Score=26.72 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=90.4
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAA---DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS 114 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 114 (244)
|+-+.+.+.+++|++..+..... .| -.......+..+...|++++|-...-.|.. -+..-|.-.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45566788899998887665443 33 345677788888889999999888888863 3566677777777777
Q ss_pred CCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH---------cCCCC-------cHhHHHHHH
Q 046446 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE---------NAVAP-------NVITFGTLI 178 (244)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~p-------~~~~~~~l~ 178 (244)
++..... .-+....-..+...|..++..+.. .+...-.++..+... ....| +...-..|+
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 6665433 233333222456678888877776 332222222211100 00001 112233466
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 046446 179 HGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~ 199 (244)
..|...+++..|..++-.+++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 777777777777777665543
No 443
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.72 E-value=26 Score=27.35 Aligned_cols=91 Identities=12% Similarity=-0.060 Sum_probs=60.2
Q ss_pred HcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcH-hHHHHHHHHHHhcCChhHH
Q 046446 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV-ITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a 190 (244)
...|.+++|.+.|...+..+ ++....|..-.+++.+.+.+..|++=++...+. .||. ..|-.--.+-...|+|+++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 34577888888888877765 455666666677788888888888777766653 3332 1222222233446888888
Q ss_pred HHHHHHHHHCCCCCC
Q 046446 191 IELLHKMKEKNVMPD 205 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (244)
...+....+.++.+.
T Consensus 202 a~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHHhccccHH
Confidence 888888887766544
No 444
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.68 E-value=78 Score=24.29 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=82.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhH-------HHHHHHHhhhchHHHHHHHHHHHHH----cCCCCChhHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIH-------NTLFIGLFEIHQVERAFKLFDEMQR----DGVAADTRTYTI 71 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ 71 (244)
.+...+.+++++|+..+.+....|...+..+. ..+...|...|+....-++....++ -.-+-......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 35567889999999999999999877765444 3466777777777665555443322 222223445666
Q ss_pred HHHHHHhC-CcHHHHHHHHHHHHHhCCC-----ccHHhHHHHHHHHHcCCCHHHHHHHHH----hcccCCccccHH
Q 046446 72 FIDGLCKN-GYIVESVELFRTLRILKCE-----LDIQAYSCLIDGLCKSGRLEIALELFH----SLPRGVLVADVV 137 (244)
Q Consensus 72 ll~~~~~~-~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~ 137 (244)
|+..+... ..++..+.+.....+.... .-...-..++..+.+.|.+.+|+.+.. ++++.+-.|+..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 77666543 3456666666555443211 112223457888899999999987654 444444344433
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.60 E-value=77 Score=24.22 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=63.7
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 115 (244)
.++....+.++....++.++.+.. ...-...++.....|++..|++++.+..+.- -+..-|+++=..-.+..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~~~L~ 174 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLSSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHhHHHH
Confidence 445556666666666666666643 2334456677778899999999888776531 11122222222212111
Q ss_pred CH-H----HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 116 RL-E----IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 116 ~~-~----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
+. + .....|..+-. ..|+..|..+..+|.-.|+...+.+-+.
T Consensus 175 e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11 1 11122223322 3688899999999998887766554433
No 446
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=59.07 E-value=28 Score=20.19 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=18.2
Q ss_pred hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 44 IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
.++.+.+.+++++..+.|.+|.......+..+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555556666655555555554444444444433
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.00 E-value=58 Score=26.28 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=45.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcccC--C----c-cccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046446 103 AYSCLIDGLCKSGRLEIALELFHSLPRG--V----L-VADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
+.-.|++.++-.|++..|+++++.+.-. + + .-...++..+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999876432 1 1 1234567777788888999999999998754
No 448
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.87 E-value=69 Score=23.45 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=62.6
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC---ChhHH--HHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA---DTRTY--TIFIDGLCKNGYIVESVELFRTLRILKCELDIQ 102 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (244)
.+...-+|.|+--|.-...+.+|-+.| ..+.|+.| |..++ ..-|......|+.+.|++...++-..-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 556666777666666555566666655 34445554 33333 356777889999999999998875543344443
Q ss_pred hHHHHHH----HHHcCCCHHHHHHHHHhccc
Q 046446 103 AYSCLID----GLCKSGRLEIALELFHSLPR 129 (244)
Q Consensus 103 ~~~~ll~----~~~~~~~~~~a~~~~~~~~~ 129 (244)
.+-.|.. -..+.|..++|+++.+.-..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 3322221 24577889999998876543
No 449
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.78 E-value=68 Score=26.64 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=70.4
Q ss_pred hhhcCChhHHHHHHHHHHh---CCC--CC---ChhhHHHHHHHHhhhchHHHHHHHHHHHHH-------cCCCCCh----
Q 046446 6 YCKNKEIEGALNLYSEMLS---KGI--KP---DVVIHNTLFIGLFEIHQVERAFKLFDEMQR-------DGVAADT---- 66 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~---~~~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~---- 66 (244)
+.-.|++.+|.+++...-- .|. .| +...||.+.-.+.+.|.+..+..+|....+ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3456888898888755321 232 22 223346666666677777777777766654 4655532
Q ss_pred ------hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 67 ------RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 67 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
.....+.-.|...|++-.|.+.|.+.... +..++..|-.+..+|..
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12223445677889999999999988765 35788999999998873
No 450
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.66 E-value=84 Score=24.36 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHHHHHccCChHHHHHHHHH-HHHcCCCCcHhH----HHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCChhhHHHHHHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLD-MEENAVAPNVIT----FGTLIHGFIRINEPSKVIELL-HKMKEKNVMPDASIVSIVVDL 215 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~ 215 (244)
|..-..+...+++......+ |++.+ .|+... |..++++ ..|.+-.++. ++..+ ...+|.-|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHH
Confidence 33444455566666666654 55544 456543 5555544 3443322222 22222 23467889999
Q ss_pred HHhccccccc
Q 046446 216 LAKNEISLNS 225 (244)
Q Consensus 216 ~~~~g~~~~a 225 (244)
++..|+.+-.
T Consensus 331 f~s~g~sEL~ 340 (412)
T KOG2297|consen 331 FCSQGQSELE 340 (412)
T ss_pred HhcCChHHHH
Confidence 9998887543
No 451
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=58.30 E-value=51 Score=21.78 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=21.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVA 168 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (244)
.+..++--+...|+++.|+.+.+.+.++|..
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3445555666778888888888888877753
No 452
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.29 E-value=45 Score=21.09 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 174 FGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
|..++..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66667777777777777777776665
No 453
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.99 E-value=40 Score=20.46 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=12.6
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 046446 179 HGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~ 199 (244)
......|++++|...+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344456677777666666553
No 454
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.54 E-value=1.4e+02 Score=26.43 Aligned_cols=65 Identities=5% Similarity=-0.003 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhCCcHHHHHHHHHHHH-HhCCCccHHhHHHHHHHHH
Q 046446 48 ERAFKLFDEMQRDGVAADTRTY-TIFIDGLCKNGYIVESVELFRTLR-ILKCELDIQAYSCLIDGLC 112 (244)
Q Consensus 48 ~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~ 112 (244)
...+...+.+.+..-.|+..+- -.+-+.|.-.|++++|+++--... ...+.++...+.+++.-|.
T Consensus 40 sd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~i 106 (929)
T KOG2062|consen 40 SDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCI 106 (929)
T ss_pred hhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHH
Confidence 3444445555555444444333 233467888889999887755443 2334555555555554443
No 455
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.18 E-value=1.3e+02 Score=26.17 Aligned_cols=64 Identities=6% Similarity=-0.022 Sum_probs=39.3
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 170 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
+......-+....+.++++.+...+..|.... .-...-.-.+.+++...|+.++|...|+.+..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344444555557777777777777765432 22444455677776777777777777776643
No 456
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=56.72 E-value=29 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 80 GYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
|+++.....+-.+.. |...+...+...+.++..
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~ 94 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLD 94 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 444444443333332 334455555555554443
No 457
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.55 E-value=1.1e+02 Score=24.87 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHh--C----C-CccHHhHHHHHHHHHcCCCHHHHHHHHHhc
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRIL--K----C-ELDIQAYSCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
+...|++..+-.||+..|+++++.+.-. + + .-...++--+.-+|...+++.+|.++|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999998876321 1 1 123445666777888999999999999865
No 458
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=56.47 E-value=85 Score=23.72 Aligned_cols=151 Identities=13% Similarity=0.007 Sum_probs=97.7
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----C
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK----NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK----S 114 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 114 (244)
..+++..+...+......+.. .....+...|.. ..+...|.+.|....+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 456778888888777764322 444455555543 3467889999997777664 2333335555554 3
Q ss_pred CCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc-----C--ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----
Q 046446 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND-----G--QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR---- 183 (244)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 183 (244)
.+..+|...|+..-+.|..+...+...+...|..- - +...|...+..+-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 48899999999998887443323345555555443 1 3347999998888776 44444555544433
Q ss_pred cCChhHHHHHHHHHHHCCC
Q 046446 184 INEPSKVIELLHKMKEKNV 202 (244)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~ 202 (244)
..+.++|..+|....+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 3478899999999988875
No 459
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.20 E-value=1.8e+02 Score=27.43 Aligned_cols=152 Identities=9% Similarity=-0.050 Sum_probs=92.7
Q ss_pred hcCChhHHHH------HHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHH---H--cCCC--CChhHHHHHHH
Q 046446 8 KNKEIEGALN------LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ---R--DGVA--ADTRTYTIFID 74 (244)
Q Consensus 8 ~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~--~~~~--~~~~~~~~ll~ 74 (244)
..|.+.+|.+ ++...-..-.++....|..+...+.+.++.++|+..-.... + .|.. -+...|..+..
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3455555555 55533222224556678888888888999999887654431 1 1222 23345666655
Q ss_pred HHHhCCcHHHHHHHHHHHHHh-------CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-------ccccHHHHH
Q 046446 75 GLCKNGYIVESVELFRTLRIL-------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV-------LVADVVTYS 140 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~ 140 (244)
.....+....|...+.+.... ..||...+++.+-..+...++++.|.++.+...... --++..++.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 556666777788777766542 235556666666666666688899998888765431 123455677
Q ss_pred HHHHHHHccCChHHHHHHH
Q 046446 141 IMIHGLYNDGQMDKAHDLF 159 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~ 159 (244)
.+.+.+...+++..|....
T Consensus 1104 ~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 7777777777766655544
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.07 E-value=1e+02 Score=24.65 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=40.1
Q ss_pred HHHHhCCcHHHHHHHHHHHHHhCCCccHH--hHHHHHHHHH--cCCCHHHHHHHHHhcccC
Q 046446 74 DGLCKNGYIVESVELFRTLRILKCELDIQ--AYSCLIDGLC--KSGRLEIALELFHSLPRG 130 (244)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 130 (244)
..+...+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999987 555554 4455555554 456788899988876654
No 461
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=55.77 E-value=74 Score=22.81 Aligned_cols=30 Identities=17% Similarity=0.001 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhC
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILK 96 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 96 (244)
...+.++..+...|+++.|-+.|.-+.+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 345667777777778888877777777643
No 462
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.45 E-value=19 Score=15.98 Aligned_cols=27 Identities=4% Similarity=-0.041 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
+.+.+..+|+++.... +.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 4455555555555432 23444444333
No 463
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.11 E-value=82 Score=22.84 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCCc----c-HHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 82 IVESVELFRTLRILKCEL----D-IQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~----~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
...|.+.|.+..+..-.| + ....-.+.....+.|+.++|.+.|.++...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 456777777665543221 1 2233345566677888888888888877654
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.06 E-value=85 Score=23.01 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=48.4
Q ss_pred CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc---cHHh--HHHHHHHHHcCCCHHHHHHHHHhcccCCccccH
Q 046446 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL---DIQA--YSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136 (244)
Q Consensus 62 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (244)
+.++..-+|.|+--|.-...+.+|-+.|..- .|+.| +..+ -..-|......|+.++|.+....+-..-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3445555555555554444444454444432 23333 2222 233455667778888887777766543333333
Q ss_pred HHHHHHH----HHHHccCChHHHHHHHHH
Q 046446 137 VTYSIMI----HGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 137 ~~~~~li----~~~~~~~~~~~a~~~~~~ 161 (244)
..+-.|. -=..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222211 113355666777666654
No 465
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.92 E-value=9.9 Score=29.47 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=38.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhCCcHHHHHH
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTR-TYTIFIDGLCKNGYIVESVE 87 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~ 87 (244)
.|.++.|++.|...+... +++...|..-..++.+.+++..|++=+...... .||.. -|-.=-.+-...|+|++|-.
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 455555555555555442 333334444444455555555555544444432 22221 12111222223455555555
Q ss_pred HHHHHHHhCC
Q 046446 88 LFRTLRILKC 97 (244)
Q Consensus 88 ~~~~~~~~~~ 97 (244)
.+....+.++
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555555544
No 466
>PRK14700 recombination factor protein RarA; Provisional
Probab=53.92 E-value=1e+02 Score=23.79 Aligned_cols=85 Identities=8% Similarity=-0.017 Sum_probs=52.4
Q ss_pred HHHHHHHHHh---CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC-----HHHHHHHHHhcccCCccccHHHHH
Q 046446 69 YTIFIDGLCK---NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-----LEIALELFHSLPRGVLVADVVTYS 140 (244)
Q Consensus 69 ~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 140 (244)
+..+++++.+ ..|++.|+-.+.+|.+.|-.|....-..++-++-.-|. ...|...++....-|.+--.....
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La 205 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLA 205 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 3345666654 46788888888888888877777777777777777774 345666666666667543333333
Q ss_pred HHHHHHHccCChH
Q 046446 141 IMIHGLYNDGQMD 153 (244)
Q Consensus 141 ~li~~~~~~~~~~ 153 (244)
..+-.++..-+-.
T Consensus 206 ~aviyLA~aPKSN 218 (300)
T PRK14700 206 QAAIYLAVAPKSN 218 (300)
T ss_pred HHHHHHHcCCCch
Confidence 3333334433333
No 467
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.90 E-value=1.5e+02 Score=25.70 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=28.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhh
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI 44 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 44 (244)
+|-.|.|+|++++|.++..+.... .......+-..+..+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 567889999999999999555543 244555666777777654
No 468
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=53.73 E-value=89 Score=23.14 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-------------CC------------CcH
Q 046446 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-------------VA------------PNV 171 (244)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------~~------------p~~ 171 (244)
.++|..+++.-... ..+..+.-.+..++...|+...+..+++.+.... .. .++
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 34555555544322 2344444444455555666666666666654320 00 012
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 172 ITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 172 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
.+-...+.++.+.++.+.+..+.+-+.+.
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33333344555557777777777776653
No 469
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=52.37 E-value=1.5e+02 Score=25.26 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=99.3
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHH-HhCCcHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL-CKNGYIVES 85 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a 85 (244)
...|+++.+.-+|++..-- +..=...|-..++-....|+.+-|..++....+- ..|+......+=..+ -..|++..|
T Consensus 308 i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~f~e~~~n~~~A 385 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEARFEESNGNFDDA 385 (577)
T ss_pred hhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHHHHHhhccHHHH
Confidence 4567777777777776531 0111223333334444447777777776655544 222333222222222 345799999
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHH---HHHHhcccCCccccHHHHHHHHHH-----HHccCChHHHHH
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL---ELFHSLPRGVLVADVVTYSIMIHG-----LYNDGQMDKAHD 157 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~ 157 (244)
..+++.+.+.- +-....-..-+..-.+.|..+.+. .++........ +....+.+.-- +.-.++.+.|..
T Consensus 386 ~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 386 KVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998764 333333344456667778888777 44444433321 22222222222 233678899999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 046446 158 LFLDMEENAVAPNVITFGTLIHGFIRIN 185 (244)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g 185 (244)
++.++.+. .+++...|..++..+...+
T Consensus 463 ~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 463 ILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 99998875 5567777888877666554
No 470
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.16 E-value=1.3e+02 Score=24.51 Aligned_cols=57 Identities=9% Similarity=-0.104 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHh--CCCcc-HHhHHHHHHHHHcCCCHHHHHHHHHh
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRIL--KCELD-IQAYSCLIDGLCKSGRLEIALELFHS 126 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (244)
.--|++...-.||.....+.++.|.+. |..|. .+| --+.-+|.-.|++.+|.+.|-.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~n 297 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLN 297 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666665442 22222 222 2344455555666666665544
No 471
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.02 E-value=52 Score=19.94 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHH
Q 046446 50 AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121 (244)
Q Consensus 50 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 121 (244)
+-+++....+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|...+.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 44556666666543 33333333333334566777777777766 33 245666666666666655443
No 472
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.27 E-value=1.2e+02 Score=23.83 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHH----hCCCccHHhHHHHHHHH-HcCCCHHHH
Q 046446 47 VERAFKLFDEMQRD-GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI----LKCELDIQAYSCLIDGL-CKSGRLEIA 120 (244)
Q Consensus 47 ~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~-~~~~~~~~a 120 (244)
+++-.+..++..+. |-.--...+-....-|++.||.+.|++.+....+ .|.+.|...+..-+..+ ....-..+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33433444444433 2222334566677788999999999888766543 46666666554433332 222223334
Q ss_pred HHHHHhcccCCcccc----HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 121 LELFHSLPRGVLVAD----VVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 121 ~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
.+..+.+.+.|...+ ..+|..+-. ....++.+|-.+|-+...
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 444444444442222 234444432 234578888888866553
No 473
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=51.08 E-value=1.3e+02 Score=24.19 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=31.5
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHH----HHHHHHh--hhchHHHHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHN----TLFIGLF--EIHQVERAFKLFDE 56 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~--~~~~~~~a~~~~~~ 56 (244)
..+.+.+++..|.++|+++.+...+|+...+. .+..+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45667788888888888888775444443322 2223332 23456677777764
No 474
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=50.88 E-value=51 Score=20.35 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=33.5
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccH
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI 101 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 101 (244)
+..+...+..+|.++.+.|.- +...+..+...+...++.+-- ..+..=++..+.|++
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 445677788888888877654 333444566666666665554 555444444445544
No 475
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=50.24 E-value=56 Score=19.76 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
++|+-....|+..|+..|..++....-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777766666555555666666666553
No 476
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.06 E-value=1.1e+02 Score=22.89 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=72.4
Q ss_pred hchHHHHHHHHHHHHH----cCCCCChh-HHHHHHHHHHhCCcHHHHHHHHHHHHHh----C-CCccHHhHHHHHHHHHc
Q 046446 44 IHQVERAFKLFDEMQR----DGVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRIL----K-CELDIQAYSCLIDGLCK 113 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~----~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~ 113 (244)
.++|..|-..|.+.-+ .|-..|.. +|....++ .+.+++++|.+.++...+- | +..-...+-.+...|-.
T Consensus 47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs 125 (288)
T KOG1586|consen 47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES 125 (288)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Confidence 3444444444443322 23333333 34333333 3445777776666654431 1 01111112234444544
Q ss_pred C-CCHHHHHHHHHhcccC--CccccHH---HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHH---HHH-HHH-
Q 046446 114 S-GRLEIALELFHSLPRG--VLVADVV---TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT---LIH-GFI- 182 (244)
Q Consensus 114 ~-~~~~~a~~~~~~~~~~--~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~-~~~- 182 (244)
. .++++|+..|+..-+. |-..+.. .+--+...-...+++.+|.++|++.....+..+..-|.. ++. +++
T Consensus 126 dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 126 DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh
Confidence 3 5666666666654321 1111111 222233334467888999999998877655544433331 121 112
Q ss_pred -hcCChhHHHHHHHHHHHC
Q 046446 183 -RINEPSKVIELLHKMKEK 200 (244)
Q Consensus 183 -~~g~~~~a~~~~~~~~~~ 200 (244)
-..+.-.+...+++..+.
T Consensus 206 l~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HhcccHHHHHHHHHHHHhc
Confidence 224554555555555554
No 477
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=49.36 E-value=1.7e+02 Score=24.99 Aligned_cols=183 Identities=14% Similarity=0.103 Sum_probs=92.6
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
+....+..++..+.. -+.+...++++++... + ...+..++++....|......-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRT-LSEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHh-CCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 455567777776644 4677777888877641 1 678888999999999877776666666665543 333333333
Q ss_pred HHHH--cCCCHHHHHHHHHhcccCCccccH-------HHHHHHHHHHHccCCh------HHHHHHHHHHHHcCC-CCcHh
Q 046446 109 DGLC--KSGRLEIALELFHSLPRGVLVADV-------VTYSIMIHGLYNDGQM------DKAHDLFLDMEENAV-APNVI 172 (244)
Q Consensus 109 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~-~p~~~ 172 (244)
.+.. +.-..+-...+++-+......+.. .++..++.-+|..... ++....+........ .-|..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 3332 333444444444444433334443 3455566645544331 333333333222111 11222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046446 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218 (244)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (244)
--...+.++...|..... ..+..........+...-...+.++.+
T Consensus 462 ~~~~~LkaLGN~g~~~~i-~~l~~~l~~~~~~~~~iR~~Av~Alr~ 506 (574)
T smart00638 462 EIQLYLKALGNAGHPSSI-KVLEPYLEGAEPLSTFIRLAAILALRN 506 (574)
T ss_pred heeeHHHhhhccCChhHH-HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 223445666666664433 333333332222333444445555543
No 478
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.24 E-value=1.1e+02 Score=22.85 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=69.0
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC-C-----------ccccHHHHHHHH
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG-V-----------LVADVVTYSIMI 143 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li 143 (244)
|.+..+..-..++.+-.+..+++.+.....+++ +...|+..+|+..++..... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 445555444444555555556666655555554 56779999998888765432 1 257777777888
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 046446 144 HGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR 183 (244)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 183 (244)
..|.. +++++|.+++.++.+.|..|.. ..+.+++.+-.
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVVKN 284 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHh
Confidence 77654 6899999999999999988654 34555665543
No 479
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=49.14 E-value=65 Score=20.22 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=31.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhc--hHHHHHHHHHHHHHcCC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH--QVERAFKLFDEMQRDGV 62 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~ 62 (244)
++..|...+++++|.+.+.++.... -.......++..+...+ .-+.+..++..+.+.+.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 4556677777777777777665321 12223334444444332 33445555555555543
No 480
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.97 E-value=3.2e+02 Score=28.08 Aligned_cols=63 Identities=16% Similarity=-0.017 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 171 VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 171 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
..+|....+.....|+++.|...+-...+.+ -+..+--..+.+.+.|+...|+.+++......
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 5678888888888999999988877776665 23455667788999999999999998776443
No 481
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.51 E-value=1.4e+02 Score=23.84 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHH----HHHHccCChHHHHHHHHHHHHcC
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMI----HGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
+.+.++..-|...+..+...++..-..+|.++- .-....+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 344556666666666666665544455665552 22334566677777666666654
No 482
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=48.38 E-value=93 Score=21.77 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
..+++..+.+.|+.-|...-.+.+..-.+.| ..-..+..++.+.|
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG 98 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG 98 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC
Confidence 3444444444444334333333444444443 22333444444444
No 483
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.53 E-value=2.5e+02 Score=26.50 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=0.0
Q ss_pred hhhhcCChhHHHHHHHHHH-----------------------hCCCCCChhh-----HHHHHHHHhhhchHHHHHHHHHH
Q 046446 5 GYCKNKEIEGALNLYSEML-----------------------SKGIKPDVVI-----HNTLFIGLFEIHQVERAFKLFDE 56 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~-----------------------~~~~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~~ 56 (244)
+|...|...+|+..|.+.. ..|-.|+... |-.+++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q ss_pred HHHcCCCCC----hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC------------HHHH
Q 046446 57 MQRDGVAAD----TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR------------LEIA 120 (244)
Q Consensus 57 m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------------~~~a 120 (244)
..+. .+++ ..+++++.+.....|.+-+|...+-+-... ..-.....-++-.++.+|. -++.
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~ev 1085 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEV 1085 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHH
Q ss_pred HH-HHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 121 LE-LFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 121 ~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
.. +++..-+....-....|+.|-..+.+.+++.+|-.+.-+
T Consensus 1086 e~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1086 EDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 484
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=47.22 E-value=57 Score=21.80 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046446 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDL 215 (244)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (244)
|...++.+ .+.|-..+...++++|.++|+..+...|+.+++-
T Consensus 112 tlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 44444443 3457777777888888888888777777766553
No 485
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.95 E-value=1.5e+02 Score=23.66 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
..++-.+-..+...|+.+.|.+++++.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555556666777777776666665
No 486
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.73 E-value=1.4e+02 Score=23.28 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc----------cCChHHH
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN----------DGQMDKA 155 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a 155 (244)
.++++.+.+.++.|.-.++.-+.-.+...=.+.++..+|+.+.... .-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 5788999999999999998877777888888999999999998753 225555555543 6899988
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHH
Q 046446 156 HDLFLDMEENAVAPNVITFGTLIHGF 181 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~l~~~~ 181 (244)
.++++.- ...|....-.+...+
T Consensus 338 mkLLQ~y----p~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 338 MKLLQNY----PTTDISKMLAVADSL 359 (370)
T ss_pred HHHHhcC----CCCCHHHHHHHHHHH
Confidence 8887643 334555444444443
No 487
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.35 E-value=76 Score=26.08 Aligned_cols=105 Identities=11% Similarity=-0.047 Sum_probs=68.4
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYT-IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 116 (244)
...+...+.++.|..++.+..+. .||...|. .=..++.+.+++..|+.=.....+.. +-....|-.=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34455667889999999888875 56554443 33477888888888888777777654 2223333333445555566
Q ss_pred HHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 117 LEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
+.+|+..|+..... .|+..-...++.-|-
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 77777777776664 577766666665543
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.21 E-value=1.2e+02 Score=22.41 Aligned_cols=59 Identities=7% Similarity=0.130 Sum_probs=38.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh-hchHHHHHHHHHHHHHc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE-IHQVERAFKLFDEMQRD 60 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~ 60 (244)
++..+-+.|+++++...++++...+...+..-.|.+-.+|-. .|....+++++..+.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 345667788888888888888888766676666666666632 35556666666665543
No 489
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.01 E-value=79 Score=20.28 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=17.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046446 178 IHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (244)
+..+.++...++|+++++-|.+.| ..+...-+.|-.
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 333445555566666666665554 234433333333
No 490
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.75 E-value=87 Score=25.76 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=71.3
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHH-HHHHHHhhhchHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhCCc
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHN-TLFIGLFEIHQVERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCKNGY 81 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 81 (244)
+.+...+.++.|..++...++. .||...|- .=..++.+.+++..|+.=+....+.. |+ ...|..=..++...+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 3456778999999999999987 67666553 33377888899999888777777753 32 2223333344445556
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 115 (244)
+.+|+..|+.... +.|+..-....+.-|-+..
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHH
Confidence 6777777776654 3688777777776665443
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.89 E-value=2e+02 Score=24.62 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHhccc
Q 046446 206 ASIVSIVVDLLAKNEI 221 (244)
Q Consensus 206 ~~~~~~l~~~~~~~g~ 221 (244)
...+..++..|+....
T Consensus 483 ~pal~~lv~lY~~r~~ 498 (665)
T KOG2422|consen 483 LPALMLLVKLYANRNE 498 (665)
T ss_pred chHHHHHHHHHHhhhh
Confidence 4567778888876543
No 492
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.72 E-value=1.7e+02 Score=23.75 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCC
Q 046446 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ-----MDKAHDLFLDMEENAVA 168 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~ 168 (244)
..+.+.|+.++..|.+.|..|....-..++.++-..|. ..-|...++....-|.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 46788888888888888776665555555555444432 22233444444455543
No 493
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.24 E-value=89 Score=20.37 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 154 KAHDLFLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
.+.++|..|..+|+--. ...|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666554332 33444555555666666666666654
No 494
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.79 E-value=1.6e+02 Score=23.17 Aligned_cols=134 Identities=14% Similarity=0.041 Sum_probs=76.1
Q ss_pred CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh-CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcc----cCCccccH
Q 046446 62 VAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCKSGRLEIALELFHSLP----RGVLVADV 136 (244)
Q Consensus 62 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 136 (244)
+..|...++.+..+-- .+.++-.+..+...+. |-.--...+......|++.|+.+.|++.+.... ..|...|+
T Consensus 66 i~~D~~~l~~m~~~ne--eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKANE--EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 4446655665554322 2344444444444443 222334567778889999999999998887654 44566666
Q ss_pred HHHHHHHH-HHHccCChHHHHHHHHHHHHcCCC----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 137 VTYSIMIH-GLYNDGQMDKAHDLFLDMEENAVA----PNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 137 ~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
..+..=+. .|....-+.+-.+-.+.+.+.|.. .-..+|.-+- |...+++.+|..+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 55443332 233333344444455555555543 2344555543 3345788999988877654
No 495
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.74 E-value=1.3e+02 Score=22.20 Aligned_cols=59 Identities=5% Similarity=-0.027 Sum_probs=40.1
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-CCcHHHHHHHHHHHHH
Q 046446 36 TLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-NGYIVESVELFRTLRI 94 (244)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 94 (244)
.++..+-+.++++++...++++...+...+..=-+.+-.+|-. .|....+.+++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566677889999999999999998877777666666666532 3455556666666554
No 496
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=43.64 E-value=2.7e+02 Score=25.77 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=39.9
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHh
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRT-YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA 103 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (244)
....+.+++++|..|...|+.+.... |-.....+.+.+.+.+|.++|+.-.+....|....
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL 151 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERL 151 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 44567777777877777777665544 34455566667777777777777666655555444
No 497
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.37 E-value=85 Score=19.65 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 47 VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
.....+.+++....+....+.....|.-.|++.|+.+.+.+-|+.-+
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 44445555555555444344444455566666777776666665543
No 498
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.92 E-value=2.1e+02 Score=24.04 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=70.5
Q ss_pred HHHcCCCHHHHHHHHHhcc---cCCc--cc---cHHHHHHHHHHHHccCChHHHHHHHHHHHH-------cCCCCc----
Q 046446 110 GLCKSGRLEIALELFHSLP---RGVL--VA---DVVTYSIMIHGLYNDGQMDKAHDLFLDMEE-------NAVAPN---- 170 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~---~~~~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~p~---- 170 (244)
.+.-.|++.+|.+++-..- ..|. .| .-..||.|.-.+.+.|.+..+..+|....+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3455689999998886542 1121 11 122356776667777777777777766553 455543
Q ss_pred -------HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046446 171 -------VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218 (244)
Q Consensus 171 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (244)
..+||. .-.|...|++-.|.+.|.+.... +..++..|-.+..+|.-
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233443 23456789999999999988765 56688899999998864
No 499
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.47 E-value=2.4e+02 Score=24.61 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT------RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSC 106 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (244)
.||..-..+ +..++..+.++|..-... ++.|. .....+--+|.+....+.|.+++++..+.+ +.++-+---
T Consensus 357 LWn~A~~~F-~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKKLF-KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLL 433 (872)
T ss_pred HHHhhHHHH-HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 344444333 456777788877754443 22232 235556667778888999999999998875 345555555
Q ss_pred HHHHHHcCCCHHHHHHHHHhc
Q 046446 107 LIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~ 127 (244)
+..+....|.-++|+.+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 566677778888888776654
No 500
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=41.07 E-value=13 Score=20.25 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh
Q 046446 10 KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE 43 (244)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 43 (244)
|-.+..+.+|+.|..+...|....|+-.+.-|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 5556778888888887777777777776665543
Done!