Query 046446
Match_columns 244
No_of_seqs 447 out of 1250
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 21:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.2E-40 4.2E-45 264.7 22.8 213 13-225 7-229 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.4E-38 8.3E-43 251.6 22.3 183 2-184 32-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1E-24 3.4E-29 178.1 25.5 225 3-232 312-542 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.1E-24 3.6E-29 177.9 25.1 230 2-236 345-580 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 1.8E-23 6E-28 172.9 9.6 151 66-221 127-287 (1134)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.3E-20 2.5E-24 141.9 26.5 225 5-235 144-368 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.9 8.2E-23 2.8E-27 169.0 9.3 129 98-226 124-256 (1134)
8 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-19 4.7E-24 140.4 24.9 227 3-234 74-333 (388)
9 2y4t_A DNAJ homolog subfamily 99.9 4.8E-19 1.6E-23 139.7 23.9 227 2-235 32-286 (450)
10 4eqf_A PEX5-related protein; a 99.9 2.1E-19 7E-24 138.2 21.2 228 3-236 72-311 (365)
11 2y4t_A DNAJ homolog subfamily 99.8 9.1E-19 3.1E-23 138.2 23.8 225 3-234 101-357 (450)
12 3hym_B Cell division cycle pro 99.8 3E-18 1E-22 129.5 24.0 226 4-234 64-298 (330)
13 3hym_B Cell division cycle pro 99.8 3.8E-18 1.3E-22 129.0 24.2 228 3-235 29-265 (330)
14 1fch_A Peroxisomal targeting s 99.8 4.6E-18 1.6E-22 130.7 22.8 228 3-236 71-315 (368)
15 2pl2_A Hypothetical conserved 99.8 4.7E-18 1.6E-22 121.5 20.6 200 28-233 2-212 (217)
16 3cv0_A Peroxisome targeting si 99.8 7.7E-18 2.6E-22 127.2 21.7 228 3-236 28-270 (327)
17 3cv0_A Peroxisome targeting si 99.8 5.2E-18 1.8E-22 128.1 19.5 228 2-234 61-314 (327)
18 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.9E-22 123.7 21.8 220 2-235 40-264 (291)
19 1fch_A Peroxisomal targeting s 99.8 1E-17 3.4E-22 128.8 21.0 228 2-233 104-357 (368)
20 3uq3_A Heat shock protein STI1 99.8 2.3E-17 7.8E-22 120.4 21.3 220 3-236 12-237 (258)
21 4eqf_A PEX5-related protein; a 99.8 4.1E-18 1.4E-22 131.0 17.7 226 2-231 105-352 (365)
22 3ieg_A DNAJ homolog subfamily 99.8 9.5E-17 3.3E-21 122.5 24.7 228 3-236 10-264 (359)
23 3u4t_A TPR repeat-containing p 99.8 1.2E-16 4E-21 117.8 23.9 230 3-236 10-251 (272)
24 2pl2_A Hypothetical conserved 99.8 5.6E-17 1.9E-21 115.9 20.0 191 3-199 12-213 (217)
25 3mkr_A Coatomer subunit epsilo 99.8 3.7E-17 1.3E-21 121.9 19.3 219 3-236 6-230 (291)
26 3ieg_A DNAJ homolog subfamily 99.8 3.8E-16 1.3E-20 119.2 24.9 190 40-234 129-334 (359)
27 2ho1_A Type 4 fimbrial biogene 99.8 3.5E-16 1.2E-20 114.0 23.5 201 31-235 37-238 (252)
28 2vq2_A PILW, putative fimbrial 99.8 4.5E-16 1.5E-20 111.2 23.1 202 30-234 7-210 (225)
29 2q7f_A YRRB protein; TPR, prot 99.8 1.2E-16 4E-21 115.7 20.3 191 5-200 32-222 (243)
30 2gw1_A Mitochondrial precursor 99.8 2.4E-16 8.1E-21 126.2 23.6 225 3-234 13-332 (514)
31 2ho1_A Type 4 fimbrial biogene 99.8 4.3E-16 1.5E-20 113.5 22.9 201 3-209 44-245 (252)
32 2vq2_A PILW, putative fimbrial 99.8 6.3E-16 2.2E-20 110.4 23.4 204 2-210 14-219 (225)
33 1ouv_A Conserved hypothetical 99.8 3.9E-15 1.3E-19 109.9 28.3 216 3-236 13-252 (273)
34 2gw1_A Mitochondrial precursor 99.8 5.4E-17 1.8E-21 129.9 17.9 228 3-236 244-479 (514)
35 2q7f_A YRRB protein; TPR, prot 99.7 2.5E-16 8.4E-21 114.0 18.5 203 29-236 21-223 (243)
36 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.1E-16 7.2E-21 116.5 17.7 224 6-235 15-244 (275)
37 3fp2_A TPR repeat-containing p 99.7 5.6E-16 1.9E-20 124.8 21.7 227 4-236 251-492 (537)
38 2h6f_A Protein farnesyltransfe 99.7 6.7E-16 2.3E-20 119.0 20.8 222 4-232 105-344 (382)
39 1b89_A Protein (clathrin heavy 99.7 1.2E-17 4.2E-22 128.5 8.6 198 2-234 38-235 (449)
40 3fp2_A TPR repeat-containing p 99.7 3.6E-15 1.2E-19 120.1 23.3 162 69-235 246-407 (537)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.6E-15 5.5E-20 111.7 16.8 218 2-229 49-269 (275)
42 4abn_A Tetratricopeptide repea 99.7 4E-15 1.4E-19 118.4 19.3 218 11-234 83-320 (474)
43 3vtx_A MAMA; tetratricopeptide 99.7 3.6E-14 1.2E-18 98.4 21.8 167 30-200 4-170 (184)
44 1b89_A Protein (clathrin heavy 99.7 2.1E-17 7.2E-22 127.2 5.1 188 7-230 14-201 (449)
45 2ond_A Cleavage stimulation fa 99.7 5.9E-14 2E-18 105.5 23.4 219 13-236 33-271 (308)
46 3vtx_A MAMA; tetratricopeptide 99.6 5.6E-14 1.9E-18 97.4 19.1 167 65-235 4-170 (184)
47 3nf1_A KLC 1, kinesin light ch 99.6 1.1E-14 3.7E-19 109.1 16.2 31 205-235 277-307 (311)
48 3uq3_A Heat shock protein STI1 99.6 3.1E-14 1.1E-18 103.7 17.9 187 2-200 44-236 (258)
49 3nf1_A KLC 1, kinesin light ch 99.6 1E-14 3.4E-19 109.2 15.1 198 2-199 33-306 (311)
50 1ouv_A Conserved hypothetical 99.6 7.9E-13 2.7E-17 97.5 24.7 192 30-236 5-216 (273)
51 3u4t_A TPR repeat-containing p 99.6 2.5E-13 8.6E-18 99.8 20.8 202 31-236 3-209 (272)
52 3as5_A MAMA; tetratricopeptide 99.6 2.6E-13 8.8E-18 93.7 18.5 166 31-200 8-173 (186)
53 4abn_A Tetratricopeptide repea 99.6 4.5E-14 1.5E-18 112.3 16.2 188 3-196 109-317 (474)
54 2h6f_A Protein farnesyltransfe 99.6 2.4E-13 8.2E-18 104.9 19.4 197 31-232 97-302 (382)
55 3ulq_A Response regulator aspa 99.6 1.4E-13 4.8E-18 106.5 18.2 230 4-236 111-369 (383)
56 3as5_A MAMA; tetratricopeptide 99.6 2.4E-13 8.1E-18 93.9 17.3 159 3-165 15-173 (186)
57 2ond_A Cleavage stimulation fa 99.6 1E-12 3.6E-17 98.7 22.0 190 8-201 69-271 (308)
58 4gyw_A UDP-N-acetylglucosamine 99.6 2.8E-13 9.5E-18 112.3 20.4 166 30-199 8-173 (723)
59 3edt_B KLC 2, kinesin light ch 99.6 6.9E-14 2.3E-18 103.1 14.8 228 6-234 11-280 (283)
60 4a1s_A PINS, partner of inscut 99.6 5E-14 1.7E-18 109.8 14.6 231 4-235 56-332 (411)
61 4i17_A Hypothetical protein; T 99.5 3.5E-12 1.2E-16 91.4 20.8 123 6-130 17-146 (228)
62 4gyw_A UDP-N-acetylglucosamine 99.5 8.6E-13 2.9E-17 109.4 19.7 166 65-234 8-173 (723)
63 3edt_B KLC 2, kinesin light ch 99.5 1.9E-13 6.6E-18 100.7 13.0 158 43-200 13-198 (283)
64 3ro2_A PINS homolog, G-protein 99.5 2.1E-13 7.3E-18 102.8 13.3 231 4-235 13-292 (338)
65 2xm6_A Protein corresponding t 99.5 4.7E-11 1.6E-15 95.4 27.4 207 9-233 56-286 (490)
66 4a1s_A PINS, partner of inscut 99.5 5.4E-14 1.8E-18 109.6 10.0 233 3-235 93-372 (411)
67 2xm6_A Protein corresponding t 99.5 5.5E-11 1.9E-15 95.0 27.2 207 9-233 92-323 (490)
68 3q15_A PSP28, response regulat 99.5 2E-12 7E-17 99.8 18.4 227 5-235 110-365 (378)
69 3sf4_A G-protein-signaling mod 99.5 2.1E-13 7.3E-18 105.8 12.6 231 4-235 17-296 (406)
70 4i17_A Hypothetical protein; T 99.5 9.9E-12 3.4E-16 89.1 19.9 173 29-207 5-214 (228)
71 3sf4_A G-protein-signaling mod 99.5 1.5E-13 5E-18 106.7 10.7 233 3-235 54-336 (406)
72 3ro2_A PINS homolog, G-protein 99.5 2.5E-13 8.6E-18 102.4 11.4 233 3-235 50-332 (338)
73 2ooe_A Cleavage stimulation fa 99.5 2.6E-11 8.8E-16 97.8 22.4 219 13-235 255-492 (530)
74 1qqe_A Vesicular transport pro 99.5 5.8E-12 2E-16 93.9 17.0 198 34-233 40-267 (292)
75 4g1t_A Interferon-induced prot 99.4 2.1E-11 7.3E-16 96.6 20.0 192 46-240 228-464 (472)
76 3qky_A Outer membrane assembly 99.4 2.9E-11 1E-15 88.5 18.8 197 29-229 13-255 (261)
77 2fo7_A Synthetic consensus TPR 99.4 2.7E-11 9.4E-16 78.8 16.7 128 34-164 4-131 (136)
78 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.8E-15 89.2 22.3 231 4-234 22-281 (373)
79 2fo7_A Synthetic consensus TPR 99.4 3.3E-11 1.1E-15 78.4 16.0 130 68-200 3-132 (136)
80 2ooe_A Cleavage stimulation fa 99.4 1.8E-10 6.3E-15 92.9 21.7 188 9-200 292-492 (530)
81 3urz_A Uncharacterized protein 99.4 6.6E-11 2.3E-15 83.7 16.6 105 5-113 13-134 (208)
82 3rjv_A Putative SEL1 repeat pr 99.4 4E-10 1.4E-14 79.9 20.6 178 13-202 3-199 (212)
83 3ulq_A Response regulator aspa 99.4 2.1E-11 7.3E-16 94.2 14.8 196 37-232 109-332 (383)
84 3urz_A Uncharacterized protein 99.4 7.6E-11 2.6E-15 83.3 16.2 174 33-213 6-197 (208)
85 2pzi_A Probable serine/threoni 99.4 1.2E-11 4.1E-16 102.6 13.6 173 7-186 402-583 (681)
86 4g1t_A Interferon-induced prot 99.4 4E-10 1.4E-14 89.3 21.8 125 3-128 58-202 (472)
87 1xi4_A Clathrin heavy chain; a 99.4 2.8E-10 9.4E-15 98.3 21.7 195 8-232 1088-1306(1630)
88 3mv2_B Coatomer subunit epsilo 99.3 1.5E-10 5.2E-15 85.6 17.6 178 50-234 85-281 (310)
89 3qky_A Outer membrane assembly 99.3 1.1E-10 3.8E-15 85.3 16.9 160 4-165 23-224 (261)
90 1hz4_A MALT regulatory protein 99.3 8E-11 2.7E-15 90.6 16.8 231 4-234 61-321 (373)
91 1qqe_A Vesicular transport pro 99.3 4.8E-11 1.6E-15 88.9 14.8 193 4-198 45-267 (292)
92 3mv2_B Coatomer subunit epsilo 99.3 3.4E-10 1.1E-14 83.8 18.7 183 15-206 85-286 (310)
93 2pzi_A Probable serine/threoni 99.3 6.8E-11 2.3E-15 98.1 16.1 173 42-221 402-583 (681)
94 4ga2_A E3 SUMO-protein ligase 99.3 4.5E-11 1.5E-15 80.0 11.7 142 40-185 6-148 (150)
95 2vsy_A XCC0866; transferase, g 99.3 2E-10 6.7E-15 93.5 17.7 154 9-166 2-158 (568)
96 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.4E-09 4.8E-14 77.7 20.1 63 33-95 6-70 (225)
97 4ga2_A E3 SUMO-protein ligase 99.3 3E-11 1E-15 80.8 10.5 143 4-151 5-149 (150)
98 3qou_A Protein YBBN; thioredox 99.3 5.4E-10 1.9E-14 83.0 18.3 166 63-232 114-281 (287)
99 2r5s_A Uncharacterized protein 99.3 2.1E-10 7.3E-15 78.8 14.7 160 69-232 9-170 (176)
100 2ifu_A Gamma-SNAP; membrane fu 99.3 3E-10 1E-14 85.2 16.3 215 8-227 3-253 (307)
101 3qou_A Protein YBBN; thioredox 99.3 3.3E-10 1.1E-14 84.1 15.8 167 28-198 114-282 (287)
102 3q15_A PSP28, response regulat 99.3 6.6E-10 2.3E-14 85.7 17.8 194 3-199 148-364 (378)
103 2vsy_A XCC0866; transferase, g 99.3 2.9E-10 1E-14 92.4 16.4 154 44-201 2-158 (568)
104 1xi4_A Clathrin heavy chain; a 99.2 3E-09 1E-13 92.1 22.1 192 3-219 1112-1327(1630)
105 2r5s_A Uncharacterized protein 99.2 1.7E-10 5.8E-15 79.3 12.2 162 33-198 8-171 (176)
106 3rjv_A Putative SEL1 repeat pr 99.2 1.9E-09 6.4E-14 76.4 17.7 177 48-236 3-198 (212)
107 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.1E-09 3.7E-14 78.3 16.6 178 3-201 11-214 (225)
108 3dra_A Protein farnesyltransfe 99.2 8E-09 2.7E-13 76.9 21.2 225 5-234 41-286 (306)
109 3e4b_A ALGK; tetratricopeptide 99.2 9.1E-09 3.1E-13 81.3 22.3 185 33-233 178-385 (452)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.8E-09 9.6E-14 75.2 17.5 127 34-165 9-150 (213)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.2 7.3E-09 2.5E-13 73.1 17.4 144 68-216 8-166 (213)
112 3u3w_A Transcriptional activat 99.2 2.9E-09 1E-13 79.2 15.9 170 30-199 74-265 (293)
113 3u3w_A Transcriptional activat 99.1 1.2E-08 4.2E-13 75.8 18.3 209 18-235 33-266 (293)
114 3e4b_A ALGK; tetratricopeptide 99.1 8.6E-09 2.9E-13 81.5 17.5 159 65-236 175-352 (452)
115 1a17_A Serine/threonine protei 99.1 9.9E-09 3.4E-13 69.2 15.3 127 68-197 15-143 (166)
116 3gw4_A Uncharacterized protein 99.1 5E-09 1.7E-13 73.2 14.1 156 7-163 3-174 (203)
117 1a17_A Serine/threonine protei 99.1 9.5E-09 3.2E-13 69.3 15.0 130 31-163 13-144 (166)
118 2ifu_A Gamma-SNAP; membrane fu 99.1 3E-09 1E-13 79.7 13.3 190 43-233 3-222 (307)
119 3gw4_A Uncharacterized protein 99.1 3.9E-09 1.3E-13 73.8 12.8 158 42-200 3-176 (203)
120 1na0_A Designed protein CTPR3; 99.1 1.3E-08 4.4E-13 65.0 14.2 95 68-164 11-105 (125)
121 1na0_A Designed protein CTPR3; 99.1 1.2E-08 4.2E-13 65.1 13.9 115 31-148 9-123 (125)
122 2qfc_A PLCR protein; TPR, HTH, 99.1 4.7E-08 1.6E-12 72.7 18.9 164 68-231 77-262 (293)
123 4gco_A Protein STI-1; structur 99.1 1.3E-08 4.5E-13 65.8 13.8 94 69-164 16-109 (126)
124 2e2e_A Formate-dependent nitri 99.1 2.4E-09 8.1E-14 73.4 10.9 122 6-130 20-144 (177)
125 2qfc_A PLCR protein; TPR, HTH, 99.0 2E-08 6.7E-13 74.7 16.4 169 30-198 74-264 (293)
126 4gco_A Protein STI-1; structur 99.0 1.3E-08 4.6E-13 65.7 13.6 113 27-142 8-121 (126)
127 2vyi_A SGTA protein; chaperone 99.0 9E-09 3.1E-13 66.3 12.5 116 68-186 14-129 (131)
128 2vyi_A SGTA protein; chaperone 99.0 2E-08 6.9E-13 64.6 14.0 118 31-151 12-129 (131)
129 2lni_A Stress-induced-phosphop 99.0 1.5E-08 5.2E-13 65.6 13.1 92 69-162 19-110 (133)
130 2lni_A Stress-induced-phosphop 99.0 1.4E-08 4.8E-13 65.7 12.8 120 28-150 13-132 (133)
131 3gyz_A Chaperone protein IPGC; 99.0 1.5E-08 5.3E-13 67.5 13.0 97 67-165 37-133 (151)
132 2e2e_A Formate-dependent nitri 99.0 4.1E-09 1.4E-13 72.2 10.6 121 42-165 21-144 (177)
133 4e6h_A MRNA 3'-END-processing 99.0 6.8E-08 2.3E-12 79.6 19.3 220 13-236 326-571 (679)
134 3gyz_A Chaperone protein IPGC; 99.0 4E-08 1.4E-12 65.5 14.2 103 30-136 35-137 (151)
135 1p5q_A FKBP52, FK506-binding p 99.0 2.4E-08 8.2E-13 75.8 14.8 123 31-155 147-283 (336)
136 4f3v_A ESX-1 secretion system 99.0 5.5E-08 1.9E-12 71.1 15.5 191 8-206 18-241 (282)
137 2c2l_A CHIP, carboxy terminus 99.0 3.1E-09 1.1E-13 78.6 8.9 98 30-129 3-100 (281)
138 3q7a_A Farnesyltransferase alp 98.9 1.9E-07 6.4E-12 70.5 18.2 221 9-234 67-330 (349)
139 2vgx_A Chaperone SYCD; alterna 98.9 7.7E-09 2.6E-13 68.8 9.7 94 33-128 23-116 (148)
140 1p5q_A FKBP52, FK506-binding p 98.9 4.4E-08 1.5E-12 74.4 14.5 150 45-198 127-292 (336)
141 1elw_A TPR1-domain of HOP; HOP 98.9 1.6E-07 5.4E-12 59.2 14.8 97 32-130 5-101 (118)
142 4e6h_A MRNA 3'-END-processing 98.9 1.4E-07 4.7E-12 77.8 17.9 208 5-217 352-585 (679)
143 2vgx_A Chaperone SYCD; alterna 98.9 1.5E-08 5E-13 67.5 10.1 99 65-165 20-118 (148)
144 3dra_A Protein farnesyltransfe 98.9 9E-07 3.1E-11 65.9 20.0 190 7-200 78-287 (306)
145 2kck_A TPR repeat; tetratricop 98.9 5.9E-08 2E-12 60.6 11.8 94 69-164 9-105 (112)
146 3upv_A Heat shock protein STI1 98.9 9.9E-08 3.4E-12 61.4 12.6 95 68-164 6-100 (126)
147 2fbn_A 70 kDa peptidylprolyl i 98.9 4.3E-09 1.5E-13 73.6 6.3 96 67-164 39-150 (198)
148 1elw_A TPR1-domain of HOP; HOP 98.9 2.1E-07 7.3E-12 58.5 13.9 97 66-164 4-100 (118)
149 3upv_A Heat shock protein STI1 98.9 1.6E-07 5.5E-12 60.4 13.3 98 31-130 4-101 (126)
150 4b4t_Q 26S proteasome regulato 98.9 6.4E-07 2.2E-11 70.1 19.3 196 4-199 12-244 (434)
151 4f3v_A ESX-1 secretion system 98.8 3.9E-07 1.3E-11 66.7 15.8 188 43-236 18-238 (282)
152 4gcn_A Protein STI-1; structur 98.8 1.4E-07 4.8E-12 60.9 12.2 95 69-164 11-111 (127)
153 3dss_A Geranylgeranyl transfer 98.8 4.5E-06 1.5E-10 62.7 21.5 220 6-234 39-303 (331)
154 2c2l_A CHIP, carboxy terminus 98.8 9.9E-08 3.4E-12 70.5 12.6 99 65-165 3-101 (281)
155 1wao_1 Serine/threonine protei 98.8 1.1E-07 3.8E-12 75.6 13.6 156 4-162 14-194 (477)
156 2kck_A TPR repeat; tetratricop 98.8 1.6E-07 5.5E-12 58.6 11.8 100 30-131 5-107 (112)
157 1elr_A TPR2A-domain of HOP; HO 98.8 8.7E-08 3E-12 61.6 10.8 95 69-164 7-107 (131)
158 3q49_B STIP1 homology and U bo 98.8 2.3E-07 7.7E-12 60.4 12.8 96 66-163 9-104 (137)
159 2fbn_A 70 kDa peptidylprolyl i 98.8 1.4E-07 4.9E-12 65.7 12.5 153 7-163 15-184 (198)
160 2xcb_A PCRH, regulatory protei 98.8 1.3E-07 4.6E-12 62.2 11.6 86 39-126 26-111 (142)
161 1elr_A TPR2A-domain of HOP; HO 98.8 7.5E-08 2.6E-12 61.9 10.1 111 31-144 4-120 (131)
162 3sz7_A HSC70 cochaperone (SGT) 98.8 2.9E-07 9.9E-12 62.1 13.2 96 67-164 12-107 (164)
163 4gcn_A Protein STI-1; structur 98.8 2.3E-07 8E-12 59.9 12.0 106 32-140 9-120 (127)
164 2xcb_A PCRH, regulatory protei 98.8 2.3E-07 7.7E-12 61.1 12.1 99 65-165 17-115 (142)
165 3q49_B STIP1 homology and U bo 98.8 3.6E-07 1.2E-11 59.4 13.0 101 28-130 6-106 (137)
166 2dba_A Smooth muscle cell asso 98.8 6E-07 2E-11 59.1 14.1 98 30-130 27-128 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.7 3E-07 1E-11 62.0 12.0 100 29-130 9-108 (164)
168 4b4t_Q 26S proteasome regulato 98.7 2.6E-06 8.8E-11 66.6 18.5 197 38-234 11-244 (434)
169 2dba_A Smooth muscle cell asso 98.7 9.9E-07 3.4E-11 58.0 13.7 97 65-164 27-127 (148)
170 3ro3_A PINS homolog, G-protein 98.7 3.6E-07 1.2E-11 60.9 11.1 132 68-199 11-157 (164)
171 1hxi_A PEX5, peroxisome target 98.7 4.6E-07 1.6E-11 57.9 11.1 95 34-130 20-114 (121)
172 3ro3_A PINS homolog, G-protein 98.7 4.9E-07 1.7E-11 60.2 11.7 134 31-164 9-157 (164)
173 1hxi_A PEX5, peroxisome target 98.7 3.5E-07 1.2E-11 58.5 9.9 94 69-164 20-113 (121)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 6.6E-07 2.3E-11 70.8 13.1 121 33-155 270-404 (457)
175 2xev_A YBGF; tetratricopeptide 98.6 2.4E-06 8.2E-11 54.8 13.6 92 37-130 8-105 (129)
176 1wao_1 Serine/threonine protei 98.6 2.4E-07 8.1E-12 73.7 9.9 117 76-195 16-134 (477)
177 2xev_A YBGF; tetratricopeptide 98.6 3.5E-06 1.2E-10 54.0 13.9 93 71-165 7-105 (129)
178 3k9i_A BH0479 protein; putativ 98.6 2.3E-07 8E-12 58.8 7.5 88 8-96 2-91 (117)
179 1ihg_A Cyclophilin 40; ppiase 98.6 1.7E-06 5.8E-11 66.5 13.4 96 68-164 225-335 (370)
180 3rkv_A Putative peptidylprolyl 98.6 1.7E-06 5.9E-11 58.1 11.8 96 68-164 13-125 (162)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2E-06 6.9E-11 68.1 13.6 131 65-198 267-413 (457)
182 3k9i_A BH0479 protein; putativ 98.5 1.7E-07 5.8E-12 59.5 5.8 85 44-129 3-89 (117)
183 1ihg_A Cyclophilin 40; ppiase 98.5 1.3E-06 4.4E-11 67.2 11.5 124 32-157 224-362 (370)
184 3q7a_A Farnesyltransferase alp 98.5 8.1E-05 2.8E-09 56.3 20.7 177 41-222 64-258 (349)
185 2if4_A ATFKBP42; FKBP-like, al 98.5 1.1E-06 3.8E-11 66.7 10.4 94 103-199 232-327 (338)
186 3rkv_A Putative peptidylprolyl 98.5 3.4E-06 1.2E-10 56.7 11.7 99 31-130 11-126 (162)
187 1dce_A Protein (RAB geranylger 98.5 4.2E-05 1.4E-09 62.1 19.9 96 47-145 89-187 (567)
188 3n71_A Histone lysine methyltr 98.5 7.7E-07 2.6E-11 70.7 9.2 125 41-165 319-464 (490)
189 3n71_A Histone lysine methyltr 98.4 2.2E-06 7.4E-11 68.2 10.9 125 76-200 319-464 (490)
190 2l6j_A TPR repeat-containing p 98.4 3.9E-06 1.3E-10 52.2 10.0 97 135-234 3-106 (111)
191 1klx_A Cysteine rich protein B 98.4 2.6E-05 8.8E-10 50.9 14.1 87 72-164 31-125 (138)
192 2if4_A ATFKBP42; FKBP-like, al 98.4 1E-06 3.4E-11 66.9 8.2 141 4-165 187-328 (338)
193 1dce_A Protein (RAB geranylger 98.4 5.7E-05 1.9E-09 61.4 18.2 174 46-224 44-244 (567)
194 1klx_A Cysteine rich protein B 98.4 1.5E-05 5.2E-10 52.0 12.2 116 5-131 4-127 (138)
195 2hr2_A Hypothetical protein; a 98.4 1.3E-05 4.4E-10 53.3 11.7 94 33-127 13-128 (159)
196 2hr2_A Hypothetical protein; a 98.3 1.4E-05 4.9E-10 53.1 11.0 63 67-129 12-85 (159)
197 3dss_A Geranylgeranyl transfer 98.3 0.00029 9.9E-09 53.0 19.3 199 31-234 26-266 (331)
198 2l6j_A TPR repeat-containing p 98.3 7.5E-06 2.6E-10 50.8 8.6 61 68-129 6-66 (111)
199 2uy1_A Cleavage stimulation fa 98.3 0.00021 7.1E-09 57.1 18.7 205 12-234 195-412 (493)
200 1na3_A Designed protein CTPR2; 98.2 2.9E-05 9.8E-10 46.2 9.4 61 33-94 11-71 (91)
201 1na3_A Designed protein CTPR2; 98.2 4.7E-05 1.6E-09 45.2 10.3 83 65-149 8-90 (91)
202 2kat_A Uncharacterized protein 98.2 3.2E-05 1.1E-09 48.5 9.9 81 13-95 2-82 (115)
203 1zu2_A Mitochondrial import re 98.1 4.3E-05 1.5E-09 50.7 9.5 99 6-108 12-131 (158)
204 2kat_A Uncharacterized protein 98.1 4E-05 1.4E-09 48.0 8.8 24 69-92 22-45 (115)
205 1zu2_A Mitochondrial import re 98.0 2.9E-05 1E-09 51.5 8.1 88 41-130 12-120 (158)
206 3ma5_A Tetratricopeptide repea 98.0 5.7E-05 2E-09 46.2 7.9 61 66-127 7-67 (100)
207 3ma5_A Tetratricopeptide repea 97.9 0.0001 3.6E-09 45.0 8.9 62 136-198 7-68 (100)
208 3ly7_A Transcriptional activat 97.9 0.00086 3E-08 50.9 15.0 142 62-210 190-347 (372)
209 2uy1_A Cleavage stimulation fa 97.9 0.004 1.4E-07 49.8 19.1 177 47-232 195-380 (493)
210 3qwp_A SET and MYND domain-con 97.7 0.00015 5.2E-09 56.8 8.8 86 43-128 299-398 (429)
211 3qww_A SET and MYND domain-con 97.7 0.00012 3.9E-09 57.4 7.7 85 45-129 312-410 (433)
212 3qww_A SET and MYND domain-con 97.7 0.00013 4.5E-09 57.1 7.8 84 81-164 313-410 (433)
213 3mkq_A Coatomer beta'-subunit; 97.7 0.00048 1.6E-08 58.3 11.7 100 77-197 663-762 (814)
214 3ly7_A Transcriptional activat 97.7 0.0032 1.1E-07 47.8 14.7 144 28-177 191-349 (372)
215 3mkq_A Coatomer beta'-subunit; 97.7 0.0026 8.9E-08 53.8 16.1 28 65-92 680-707 (814)
216 3qwp_A SET and MYND domain-con 97.6 0.00021 7.2E-09 55.9 8.1 89 76-164 297-399 (429)
217 2kc7_A BFR218_protein; tetratr 97.6 0.00055 1.9E-08 41.3 8.5 57 39-96 8-65 (99)
218 2kc7_A BFR218_protein; tetratr 97.4 0.00075 2.6E-08 40.7 6.7 81 3-93 7-88 (99)
219 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0047 1.6E-07 37.8 10.2 67 30-96 4-76 (104)
220 3bee_A Putative YFRE protein; 97.3 0.0028 9.5E-08 38.0 8.5 65 65-130 5-72 (93)
221 1pc2_A Mitochondria fission pr 97.1 0.0048 1.6E-07 40.5 8.7 84 10-95 12-100 (152)
222 3bee_A Putative YFRE protein; 97.0 0.018 6E-07 34.4 10.1 67 134-201 4-73 (93)
223 2v5f_A Prolyl 4-hydroxylase su 97.0 0.011 3.7E-07 36.1 9.4 67 64-130 3-75 (104)
224 3mkq_B Coatomer subunit alpha; 97.0 0.02 6.8E-07 38.6 11.0 103 74-197 13-115 (177)
225 1pc2_A Mitochondria fission pr 96.9 0.016 5.6E-07 38.0 9.7 83 46-130 13-100 (152)
226 3mkq_B Coatomer subunit alpha; 96.8 0.059 2E-06 36.3 14.3 128 40-197 14-141 (177)
227 3u64_A Protein TP_0956; tetrat 96.7 0.031 1.1E-06 40.9 10.9 83 47-131 179-270 (301)
228 4h7y_A Dual specificity protei 96.6 0.024 8.2E-07 36.9 8.6 65 150-216 74-138 (161)
229 3u64_A Protein TP_0956; tetrat 96.6 0.025 8.5E-07 41.4 9.8 95 11-107 178-283 (301)
230 4gns_B Protein CSD3, chitin bi 96.2 0.068 2.3E-06 44.8 11.4 124 2-128 254-398 (754)
231 4h7y_A Dual specificity protei 96.2 0.068 2.3E-06 34.9 8.9 54 115-169 74-127 (161)
232 4gns_B Protein CSD3, chitin bi 96.2 0.08 2.7E-06 44.4 11.6 125 35-162 252-397 (754)
233 1nzn_A CGI-135 protein, fissio 96.1 0.12 4.2E-06 32.6 9.6 82 83-165 18-103 (126)
234 1nzn_A CGI-135 protein, fissio 95.9 0.14 5E-06 32.3 9.4 87 43-130 13-103 (126)
235 2ff4_A Probable regulatory pro 95.8 0.036 1.2E-06 42.7 7.6 73 33-106 173-250 (388)
236 1v54_E Cytochrome C oxidase po 95.7 0.16 5.5E-06 30.5 9.5 46 153-198 27-72 (109)
237 4fhn_B Nucleoporin NUP120; pro 95.7 0.38 1.3E-05 42.7 14.3 209 3-219 819-1079(1139)
238 1wy6_A Hypothetical protein ST 95.7 0.23 7.7E-06 31.9 13.1 138 44-203 20-157 (172)
239 1wy6_A Hypothetical protein ST 95.6 0.25 8.4E-06 31.8 15.2 140 7-168 18-157 (172)
240 1v54_E Cytochrome C oxidase po 95.3 0.23 7.8E-06 29.9 9.9 68 111-179 19-87 (109)
241 2ff4_A Probable regulatory pro 95.2 0.29 9.8E-06 37.8 10.8 75 139-214 174-253 (388)
242 2y69_E Cytochrome C oxidase su 95.0 0.37 1.3E-05 30.7 9.5 61 153-214 70-130 (152)
243 4b4t_P 26S proteasome regulato 94.7 1.2 4E-05 35.1 15.8 49 10-58 30-83 (445)
244 2y69_E Cytochrome C oxidase su 94.5 0.52 1.8E-05 30.0 9.9 64 116-180 68-131 (152)
245 4b4t_R RPN7, 26S proteasome re 93.8 1.6 5.4E-05 34.1 12.1 56 4-59 139-196 (429)
246 4fhn_B Nucleoporin NUP120; pro 93.6 3.8 0.00013 36.5 16.2 144 72-222 818-987 (1139)
247 3ffl_A Anaphase-promoting comp 93.5 0.66 2.3E-05 30.8 8.1 115 3-130 27-151 (167)
248 3lvg_A Clathrin heavy chain 1; 93.3 0.00024 8.3E-09 55.6 -9.7 118 30-156 82-219 (624)
249 4b4t_P 26S proteasome regulato 93.1 2.5 8.7E-05 33.2 17.0 190 44-234 29-246 (445)
250 2zu6_B Programmed cell death p 92.1 2.4 8.2E-05 31.5 10.3 80 139-219 169-250 (307)
251 4b4t_R RPN7, 26S proteasome re 92.0 1.5 5.1E-05 34.3 9.7 97 32-128 132-235 (429)
252 3ffl_A Anaphase-promoting comp 92.0 1.8 6.2E-05 28.7 10.1 127 26-165 13-151 (167)
253 3txn_A 26S proteasome regulato 92.0 3.4 0.00012 31.9 13.6 164 33-197 21-207 (394)
254 3eiq_C Programmed cell death p 91.0 4.1 0.00014 30.9 13.6 214 2-220 60-302 (358)
255 3o48_A Mitochondria fission 1 90.9 2 7E-05 27.3 9.5 68 63-130 37-107 (134)
256 1k1a_A B-cell lymphoma 3-encod 90.5 3.2 0.00011 28.9 10.1 86 2-91 12-101 (241)
257 3txn_A 26S proteasome regulato 90.2 5.2 0.00018 30.9 16.7 161 2-163 25-208 (394)
258 4ady_A RPN2, 26S proteasome re 89.1 11 0.00036 32.9 15.2 90 109-200 498-589 (963)
259 1zbp_A Hypothetical protein VP 88.4 2.1 7E-05 31.0 7.0 54 41-95 7-60 (273)
260 3o48_A Mitochondria fission 1 87.9 3.7 0.00013 26.1 9.4 66 99-164 38-106 (134)
261 2p58_C Putative type III secre 87.2 3.4 0.00012 24.9 7.6 47 111-163 50-96 (116)
262 3esl_A Checkpoint serine/threo 86.8 5.9 0.0002 27.3 9.3 56 80-135 93-149 (202)
263 3lvg_A Clathrin heavy chain 1; 86.3 0.0089 3E-07 47.1 -6.4 118 100-232 53-170 (624)
264 2d2s_A Exocyst complex compone 84.6 8.7 0.0003 27.2 10.1 88 3-93 25-118 (235)
265 2uwj_G Type III export protein 84.2 5 0.00017 24.1 7.5 50 76-131 49-98 (115)
266 2p58_C Putative type III secre 83.6 5.4 0.00018 24.0 7.8 83 46-139 22-106 (116)
267 3hra_A Ankyrin repeat family p 83.5 6.5 0.00022 26.4 7.6 16 4-19 10-25 (201)
268 2wpv_A GET4, UPF0363 protein Y 83.2 12 0.00042 27.8 15.9 121 5-125 22-158 (312)
269 4ady_A RPN2, 26S proteasome re 82.8 24 0.00081 30.9 16.9 85 41-129 500-588 (963)
270 1y8m_A FIS1; mitochondria, unk 82.7 7.6 0.00026 25.1 11.4 67 64-130 37-106 (144)
271 1y8m_A FIS1; mitochondria, unk 82.2 7.9 0.00027 25.0 10.8 66 99-164 37-105 (144)
272 2fe3_A Peroxide operon regulat 81.9 8.1 0.00028 24.9 7.7 61 161-222 12-72 (145)
273 3jxi_A Vanilloid receptor-rela 81.9 2.1 7.2E-05 30.4 4.7 55 3-57 9-72 (260)
274 1mzb_A Ferric uptake regulatio 81.1 8.3 0.00028 24.5 7.1 59 163-222 10-69 (136)
275 2d2s_A Exocyst complex compone 81.1 12 0.00042 26.4 8.8 88 37-127 24-117 (235)
276 2w57_A Ferric uptake regulatio 80.8 8.8 0.0003 24.9 7.0 61 162-223 8-69 (150)
277 3eyy_A Putative iron uptake re 80.1 7.4 0.00025 25.1 6.4 59 162-222 10-68 (145)
278 3lpz_A GET4 (YOR164C homolog); 79.5 18 0.0006 27.3 20.3 106 41-150 65-181 (336)
279 3eu9_A Huntingtin-interacting 79.2 4.2 0.00014 28.1 5.5 175 3-195 13-198 (240)
280 3esl_A Checkpoint serine/threo 78.5 14 0.00047 25.5 10.9 53 117-169 95-148 (202)
281 2xig_A Ferric uptake regulatio 78.2 11 0.00039 24.4 7.6 60 162-222 18-77 (150)
282 4ets_A Ferric uptake regulatio 77.6 13 0.00043 24.6 7.2 59 163-222 25-85 (162)
283 2nsz_A Programmed cell death p 77.6 11 0.00037 23.8 8.2 62 2-64 13-76 (129)
284 1wdy_A 2-5A-dependent ribonucl 76.9 17 0.00058 25.7 9.5 17 3-19 9-25 (285)
285 4a1g_A Mitotic checkpoint seri 76.9 13 0.00044 24.3 8.5 52 84-135 83-135 (152)
286 2uwj_G Type III export protein 76.6 10 0.00034 22.8 8.7 77 81-165 21-97 (115)
287 2fu4_A Ferric uptake regulatio 75.9 8.5 0.00029 21.7 6.9 64 160-224 6-70 (83)
288 2ion_A PDCD4, programmed cell 75.5 14 0.00048 24.1 7.5 66 103-169 11-78 (152)
289 1qsa_A Protein (soluble lytic 74.9 34 0.0012 28.2 17.1 115 116-234 229-347 (618)
290 1ug3_A EIF4GI, eukaryotic prot 74.2 17 0.00059 27.3 7.8 91 2-93 17-112 (339)
291 2ion_A PDCD4, programmed cell 74.0 16 0.00054 23.9 8.2 61 2-63 15-77 (152)
292 2nsz_A Programmed cell death p 72.2 16 0.00053 23.0 8.8 65 103-168 9-75 (129)
293 1wdy_A 2-5A-dependent ribonucl 71.7 8.3 0.00028 27.4 5.5 11 17-27 19-29 (285)
294 2wvi_A Mitotic checkpoint seri 71.6 19 0.00065 23.8 8.4 51 85-135 79-130 (164)
295 2wpv_A GET4, UPF0363 protein Y 70.9 30 0.001 25.7 18.4 150 33-198 35-215 (312)
296 2o03_A Probable zinc uptake re 70.1 11 0.00039 23.7 5.2 46 142-187 16-61 (131)
297 3kea_A K1L; tropism, ANK repea 69.2 25 0.00086 25.3 7.6 53 106-161 131-183 (285)
298 3mwm_A ZUR, putative metal upt 69.0 11 0.00036 24.2 4.9 47 141-187 18-64 (139)
299 1k1a_A B-cell lymphoma 3-encod 68.8 25 0.00087 24.1 8.9 155 38-205 13-177 (241)
300 3lpz_A GET4 (YOR164C homolog); 68.7 35 0.0012 25.7 19.9 134 10-159 10-159 (336)
301 3ltm_A Alpha-REP4; protein eng 68.3 25 0.00084 23.8 17.6 186 13-221 18-203 (211)
302 3mwm_A ZUR, putative metal upt 67.0 9.9 0.00034 24.3 4.5 48 35-82 17-64 (139)
303 2o03_A Probable zinc uptake re 66.9 11 0.00037 23.8 4.6 45 37-81 16-60 (131)
304 2b7e_A PRE-mRNA processing pro 66.3 8.3 0.00028 20.5 3.2 29 13-41 3-31 (59)
305 3l6a_A Eukaryotic translation 66.0 42 0.0014 25.6 13.2 69 2-74 18-91 (364)
306 1zbp_A Hypothetical protein VP 65.9 35 0.0012 24.7 13.4 116 74-200 5-129 (273)
307 1ug3_A EIF4GI, eukaryotic prot 65.6 18 0.00062 27.2 6.3 25 69-93 14-38 (339)
308 2fu4_A Ferric uptake regulatio 64.9 16 0.00056 20.5 5.9 58 22-80 8-66 (83)
309 2rfa_A Transient receptor pote 63.1 33 0.0011 23.4 7.8 24 144-167 159-182 (232)
310 3l6a_A Eukaryotic translation 62.7 42 0.0014 25.6 7.8 74 68-142 14-89 (364)
311 4a1g_A Mitotic checkpoint seri 61.2 31 0.0011 22.5 10.4 52 155-206 84-136 (152)
312 1mzb_A Ferric uptake regulatio 60.9 15 0.00052 23.2 4.5 62 21-83 8-70 (136)
313 2pnn_A Transient receptor pote 60.5 19 0.00066 25.5 5.5 55 3-57 17-80 (273)
314 4g8k_A 2-5A-dependent ribonucl 60.5 48 0.0016 24.4 9.6 108 87-206 220-329 (337)
315 4ets_A Ferric uptake regulatio 60.5 16 0.00056 24.0 4.7 69 48-117 14-85 (162)
316 2etb_A Transient receptor pote 59.4 39 0.0013 23.6 7.0 55 3-58 6-70 (256)
317 2keb_A DNA polymerase subunit 58.3 27 0.00092 20.8 6.8 58 154-213 27-89 (101)
318 3hra_A Ankyrin repeat family p 58.0 38 0.0013 22.4 7.0 155 41-206 12-173 (201)
319 3aji_A 26S proteasome non-ATPa 57.9 42 0.0014 22.9 8.9 183 2-205 9-199 (231)
320 3bge_A Predicted ATPase; struc 57.7 43 0.0015 23.0 8.0 45 36-80 9-56 (201)
321 3eyy_A Putative iron uptake re 57.5 18 0.0006 23.3 4.4 61 20-82 8-68 (145)
322 3t8k_A Uncharacterized protein 56.6 41 0.0014 22.4 8.0 24 76-99 45-68 (186)
323 2w57_A Ferric uptake regulatio 56.5 17 0.0006 23.5 4.2 63 20-83 6-69 (150)
324 2r9g_A AAA ATPase, central reg 56.5 46 0.0016 22.9 9.5 64 33-97 13-84 (204)
325 4b4t_S RPN3, 26S proteasome re 56.5 77 0.0026 25.5 9.8 65 31-95 231-299 (523)
326 3t8k_A Uncharacterized protein 55.4 43 0.0015 22.3 8.7 93 4-100 11-108 (186)
327 2wvi_A Mitotic checkpoint seri 55.0 43 0.0015 22.2 10.2 53 155-207 79-132 (164)
328 2qx5_A Nucleoporin NIC96; mRNA 53.7 98 0.0033 25.9 11.3 77 4-92 302-382 (661)
329 3qil_A Clathrin heavy chain 1; 53.3 17 0.00057 22.7 3.4 53 33-88 34-86 (125)
330 2fe3_A Peroxide operon regulat 52.9 42 0.0014 21.4 7.3 58 57-115 13-70 (145)
331 3kae_A CDC27, possible protein 52.7 50 0.0017 22.3 6.6 23 5-27 71-93 (242)
332 4b4t_S RPN3, 26S proteasome re 52.7 90 0.0031 25.2 10.4 62 66-130 231-299 (523)
333 2zu6_B Programmed cell death p 52.2 69 0.0024 23.7 7.7 21 3-23 173-193 (307)
334 4aez_C MAD3, mitotic spindle c 51.9 59 0.002 22.8 8.8 54 153-206 131-185 (223)
335 3pvs_A Replication-associated 51.9 85 0.0029 24.6 14.1 29 29-59 192-220 (447)
336 2xig_A Ferric uptake regulatio 51.3 46 0.0016 21.4 7.7 60 56-116 17-76 (150)
337 3ctd_A Putative ATPase, AAA fa 51.2 58 0.002 22.6 8.5 67 31-97 32-106 (213)
338 1qsa_A Protein (soluble lytic 50.3 1.1E+02 0.0037 25.4 17.9 20 145-164 390-409 (618)
339 4aez_C MAD3, mitotic spindle c 49.6 64 0.0022 22.6 8.2 54 118-171 131-185 (223)
340 2qq8_A TBC1 domain family memb 49.4 78 0.0027 23.6 7.3 45 87-131 214-258 (334)
341 3aji_A 26S proteasome non-ATPa 49.4 59 0.002 22.1 6.7 145 38-194 10-159 (231)
342 2ijq_A Hypothetical protein; s 49.3 54 0.0018 21.6 8.2 60 139-199 36-103 (161)
343 4gq2_M Nucleoporin NUP120; bet 48.7 1.4E+02 0.0048 26.2 11.6 88 107-200 816-926 (950)
344 2ijq_A Hypothetical protein; s 47.7 57 0.002 21.5 8.2 60 104-164 36-103 (161)
345 2r9g_A AAA ATPase, central reg 47.6 66 0.0022 22.1 9.9 61 71-132 16-84 (204)
346 3rjo_A Endoplasmic reticulum a 47.6 96 0.0033 24.0 22.7 201 6-218 118-352 (419)
347 3kae_A CDC27, possible protein 46.3 66 0.0022 21.7 6.8 36 201-236 201-238 (242)
348 4gq2_M Nucleoporin NUP120; bet 45.9 1.6E+02 0.0053 25.9 12.3 88 72-165 816-926 (950)
349 3kea_A K1L; tropism, ANK repea 45.3 81 0.0028 22.5 7.7 169 8-197 8-184 (285)
350 3eu9_A Huntingtin-interacting 45.2 69 0.0024 21.7 6.7 45 41-89 16-62 (240)
351 3f3f_C Nucleoporin NUP85; stru 44.7 1.3E+02 0.0044 24.6 8.1 54 170-225 515-568 (570)
352 3eiq_C Programmed cell death p 43.7 1.1E+02 0.0036 23.4 8.9 21 3-23 224-244 (358)
353 3ljn_A Hypothetical protein; a 43.6 98 0.0033 23.0 7.5 86 3-96 24-111 (364)
354 4fke_A Aminopeptidase N; zinc 42.7 1.7E+02 0.0059 25.5 18.4 158 36-200 691-860 (909)
355 3f3f_C Nucleoporin NUP85; stru 42.2 66 0.0022 26.2 6.1 89 30-120 478-568 (570)
356 2rg8_A Programmed cell death p 42.1 72 0.0025 21.0 6.8 22 2-23 16-37 (165)
357 2rg8_A Programmed cell death p 41.7 71 0.0024 21.1 5.4 27 104-130 13-39 (165)
358 3twr_A Tankyrase-2; ankyrin re 41.4 55 0.0019 20.8 5.0 17 109-125 80-96 (165)
359 3pvs_A Replication-associated 40.8 1.3E+02 0.0044 23.6 14.2 47 47-95 167-221 (447)
360 2keb_A DNA polymerase subunit 39.8 59 0.002 19.4 5.7 30 50-79 28-57 (101)
361 2qfz_A TBC1 domain family memb 39.7 1E+02 0.0034 23.1 6.7 79 52-130 230-315 (345)
362 2qq8_A TBC1 domain family memb 38.8 44 0.0015 25.0 4.5 78 52-129 214-294 (334)
363 1wgl_A TOLL-interacting protei 38.8 45 0.0015 17.6 3.5 23 183-205 35-57 (59)
364 3bge_A Predicted ATPase; struc 38.3 95 0.0032 21.3 9.9 62 71-132 9-78 (201)
365 2f8y_A Notch homolog 1, transl 37.6 91 0.0031 20.9 7.1 6 43-48 34-39 (223)
366 3hzj_A Rabgap1L, RAB GTPase-ac 37.5 1.2E+02 0.0041 22.2 8.6 77 52-129 175-256 (310)
367 3ljn_A Hypothetical protein; a 37.1 1.1E+02 0.0039 22.6 6.7 20 43-62 93-112 (364)
368 3b7b_A Euchromatic histone-lys 36.7 61 0.0021 22.1 4.9 208 2-233 14-234 (237)
369 3qil_A Clathrin heavy chain 1; 35.3 65 0.0022 20.1 4.0 39 112-153 43-81 (125)
370 2yru_A Steroid receptor RNA ac 35.1 80 0.0027 19.5 5.4 43 53-95 48-90 (118)
371 3rjo_A Endoplasmic reticulum a 34.8 1.6E+02 0.0054 22.8 18.5 156 35-199 201-368 (419)
372 3e3v_A Regulatory protein RECX 34.0 1E+02 0.0036 20.5 9.5 52 82-134 49-100 (177)
373 3c1d_A Protein ORAA, regulator 33.8 98 0.0033 20.1 10.2 50 82-133 46-95 (159)
374 1bpo_A Protein (clathrin); cla 33.5 1.8E+02 0.0063 23.2 9.9 22 33-54 363-384 (494)
375 1wty_A Hypothetical protein TT 32.9 86 0.0029 19.2 6.6 77 11-94 3-80 (119)
376 1bd8_A P19INK4D CDK4/6 inhibit 32.9 33 0.0011 21.6 2.8 16 6-21 9-24 (156)
377 3jxi_A Vanilloid receptor-rela 32.6 43 0.0015 23.4 3.6 16 178-193 144-159 (260)
378 3bqo_A Telomeric repeat-bindin 32.4 76 0.0026 21.8 4.3 46 117-164 94-145 (211)
379 3t5v_B Nuclear mRNA export pro 31.3 89 0.003 24.7 5.2 62 68-129 178-248 (455)
380 3t5v_B Nuclear mRNA export pro 30.5 1.9E+02 0.0064 22.9 6.9 62 138-199 178-248 (455)
381 3lxu_X Tripeptidyl-peptidase 2 29.8 2.6E+02 0.0089 25.8 8.2 67 152-220 1265-1331(1354)
382 3ygs_P Procaspase 9; apoptosis 29.8 88 0.003 18.3 5.9 34 116-153 52-85 (97)
383 2dzn_A Probable 26S proteasome 29.4 1.2E+02 0.004 20.4 5.3 19 3-21 6-24 (228)
384 3ctd_A Putative ATPase, AAA fa 29.3 1.4E+02 0.0049 20.7 9.5 63 69-131 35-105 (213)
385 2i2x_B MTAC, methyltransferase 28.7 32 0.0011 24.7 2.2 48 174-222 40-87 (258)
386 1ixm_A SPO0B, protein (sporula 28.6 90 0.0031 21.2 4.4 24 71-94 37-60 (192)
387 1oai_A Nuclear RNA export fact 28.6 57 0.002 17.2 2.7 23 9-31 33-56 (59)
388 2cwy_A Hypothetical protein TT 28.4 94 0.0032 18.2 5.8 50 148-199 13-67 (94)
389 1dp3_A TRAM protein; helix-loo 28.2 51 0.0018 17.1 2.3 31 48-78 13-43 (55)
390 2ko4_A Mediator of RNA polymer 28.0 78 0.0027 17.9 3.2 32 61-92 31-62 (81)
391 1n11_A Ankyrin; clathrin, BAND 27.6 2E+02 0.007 21.9 7.0 48 3-54 18-67 (437)
392 4fke_A Aminopeptidase N; zinc 27.1 3.2E+02 0.011 23.9 17.8 155 3-164 693-859 (909)
393 2p22_A Suppressor protein STP2 26.1 1.5E+02 0.0051 19.8 5.8 44 33-77 113-156 (174)
394 2dzn_A Probable 26S proteasome 25.8 76 0.0026 21.4 3.8 14 42-55 10-23 (228)
395 1s6c_A KV4 potassium channel-i 25.7 1.4E+02 0.0047 19.3 9.9 42 153-196 140-181 (183)
396 2xai_A ASB-9, ankyrin repeat a 25.5 1.7E+02 0.0059 20.3 7.1 172 2-193 6-185 (261)
397 3ibx_A TENA, HP1287, putative 25.5 1.7E+02 0.0057 20.2 7.3 45 101-149 159-207 (221)
398 3bqo_A Telomeric repeat-bindin 25.3 1.7E+02 0.0058 20.2 9.3 49 82-130 94-146 (211)
399 2jp7_A MRNA export factor MEX6 25.2 27 0.00092 18.4 1.0 21 10-31 33-53 (57)
400 3qye_A TBC1 domain family memb 25.2 2.1E+02 0.0071 21.2 9.7 133 11-150 164-308 (331)
401 3d5l_A Regulatory protein RECX 24.9 1.8E+02 0.006 20.2 10.3 53 81-134 91-143 (221)
402 1ixm_A SPO0B, protein (sporula 24.6 1.2E+02 0.0042 20.5 4.4 23 141-163 37-59 (192)
403 2i2x_B MTAC, methyltransferase 24.5 50 0.0017 23.6 2.6 35 43-77 48-82 (258)
404 3ezx_A MMCP 1, monomethylamine 24.4 59 0.002 22.5 2.9 35 148-182 14-48 (215)
405 3qye_A TBC1 domain family memb 24.3 2.2E+02 0.0074 21.1 11.1 134 46-186 164-309 (331)
406 2cos_A Serine/threonine protei 24.3 84 0.0029 16.3 2.9 11 47-57 38-48 (54)
407 2f6m_A Suppressor protein STP2 24.2 95 0.0032 16.8 5.6 44 34-78 5-48 (65)
408 2br9_A 14-3-3E, 14-3-3 protein 24.0 1.9E+02 0.0066 20.4 6.6 62 138-199 7-69 (234)
409 1zl8_A LIN-7; heterodimer, alp 23.7 83 0.0028 16.0 4.7 19 46-64 8-26 (53)
410 1uzc_A Hypothetical protein FL 23.1 1E+02 0.0036 16.9 3.7 31 47-77 14-44 (71)
411 2qfz_A TBC1 domain family memb 22.9 2.4E+02 0.0082 21.0 8.3 77 87-163 230-313 (345)
412 2rpa_A Katanin P60 ATPase-cont 22.8 70 0.0024 18.1 2.5 21 4-24 20-40 (78)
413 3ltj_A Alpharep-4; protein eng 22.8 1.7E+02 0.0058 19.3 18.1 171 29-219 26-196 (201)
414 4hbd_A KN motif and ankyrin re 22.6 55 0.0019 23.3 2.6 7 78-84 120-126 (276)
415 2bn5_A PSI; nuclear protein, s 22.5 68 0.0023 14.6 2.5 21 108-128 9-29 (33)
416 3ltm_A Alpha-REP4; protein eng 22.0 1.8E+02 0.0062 19.3 15.3 140 29-184 62-201 (211)
417 1q2z_A ATP-dependent DNA helic 21.9 34 0.0012 21.2 1.2 51 44-97 40-94 (120)
418 3b2a_A TON_1937, putative unch 21.8 2.3E+02 0.0078 20.4 6.8 112 84-201 94-220 (265)
419 2dod_A Transcription elongatio 21.8 1.2E+02 0.0042 17.3 4.1 31 47-77 16-46 (82)
420 1s3q_A Ferritin; ferroxidase, 21.3 1.6E+02 0.0056 19.4 4.5 21 177-197 139-159 (173)
421 3bu8_A Telomeric repeat-bindin 20.4 2.3E+02 0.0078 19.9 14.0 49 82-130 88-143 (235)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-40 Score=264.74 Aligned_cols=213 Identities=15% Similarity=0.210 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHhCCCCCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc---------H
Q 046446 13 EGALNLYSEMLSKGIKPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY---------I 82 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~ 82 (244)
..+..+.+++.+.+..+++. .++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34566777777777665544 6889999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccc
Q 046446 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225 (244)
Q Consensus 163 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (244)
.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...+....+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g 229 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTG 229 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCC
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhh
Confidence 999999999999999999999999999999999999999999999999999999886655433
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-38 Score=251.59 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=177.3
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhh---------chHHHHHHHHHHHHHcCCCCChhHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI---------HQVERAFKLFDEMQRDGVAADTRTYTIF 72 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l 72 (244)
+|++|++.|++++|.++|++|.+.|+.||..+||.+|.+|++. +.++.|.++|++|.+.|+.||..||++|
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 5899999999999999999999999999999999999999865 4589999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCCh
Q 046446 73 IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 152 (244)
|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 046446 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 184 (244)
++|.+++++|.+.|..|+..||+.++..|...
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988753
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1e-24 Score=178.08 Aligned_cols=225 Identities=8% Similarity=0.018 Sum_probs=100.5
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
+..|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|..+++++.+. .+.+..+++.++.+|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccH
Confidence 445556666666666666665442 223344444444444444444444444444432 122344444444444444444
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+.+
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444432 2334444444444444444444444444444332 223444444444444444444444444444
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHhccccccchhhhhhh
Q 046446 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK----NVMPD--ASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 163 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|...|+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4322 113344444444444444444444444444332 33333 334444444444444444444444433
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.1e-24 Score=177.92 Aligned_cols=230 Identities=12% Similarity=0.083 Sum_probs=207.5
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
++.++.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5678899999999999999998753 5678899999999999999999999999998863 3367899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
+++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|++
T Consensus 423 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 423 HDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999875 5688999999999999999999999999998764 45789999999999999999999999999
Q ss_pred HHHc----CCCCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 162 MEEN----AVAPN--VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 162 ~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
+.+. +..|+ ..+|..+..+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+.+.+.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9876 66787 7899999999999999999999999998875 347899999999999999999999999988764
Q ss_pred h
Q 046446 236 E 236 (244)
Q Consensus 236 ~ 236 (244)
.
T Consensus 580 ~ 580 (597)
T 2xpi_A 580 S 580 (597)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=172.88 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHH---HhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLR---ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
..||+++|++|++.|++++|.++|++|. +.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4578999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------hhhHHHHHHH
Q 046446 143 IHGLYNDGQM-DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD------ASIVSIVVDL 215 (244)
Q Consensus 143 i~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 215 (244)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999998766554 333444443 3355554 5667778888
Q ss_pred HHhccc
Q 046446 216 LAKNEI 221 (244)
Q Consensus 216 ~~~~g~ 221 (244)
|.+.+.
T Consensus 282 ~s~d~~ 287 (1134)
T 3spa_A 282 YAKDGR 287 (1134)
T ss_dssp HCCCSC
T ss_pred HccCCC
Confidence 887663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=7.3e-20 Score=141.91 Aligned_cols=225 Identities=12% Similarity=0.023 Sum_probs=158.1
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 2234455555555666666666666666655542 1234555566666666666666
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|...+++..+.. +.+..++..+..+|...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|.+.|+.+.+
T Consensus 222 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666665554 3456778888888888888888888888887764 33577888888888888999999999888887
Q ss_pred cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 165 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|+..|+.+.+.
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 53 4577788888888888999999999998887753 335678888888999999999999988877653
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=168.96 Aligned_cols=129 Identities=9% Similarity=0.175 Sum_probs=115.7
Q ss_pred CccHHhHHHHHHHHHcCCCHHHHHHHHHhcc---cCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHH
Q 046446 98 ELDIQAYSCLIDGLCKSGRLEIALELFHSLP---RGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITF 174 (244)
Q Consensus 98 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 174 (244)
..-..|||++|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446789999999999999999999998875 4478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccch
Q 046446 175 GTLIHGFIRINEP-SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSL 226 (244)
Q Consensus 175 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (244)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.+-++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 9999999999985 789999999999999999999998887766665444333
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=1.4e-19 Score=140.39 Aligned_cols=227 Identities=12% Similarity=0.014 Sum_probs=133.4
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+.+.|++++|...|+++.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCH
Confidence 345666666666666666666542 2233456666666666666666666666655542 11233444555555555555
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC-------------------------------
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV------------------------------- 131 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 131 (244)
++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+
T Consensus 152 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 152 EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555543 2344555555555555555555555555443321
Q ss_pred -c-cccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 046446 132 -L-VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209 (244)
Q Consensus 132 -~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 209 (244)
. +.+..++..+...+...|++++|.+.|+.+.+... .+..+|..+...+.+.|++++|...++++.+.. +.+..++
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 308 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSL 308 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 0 22355666666677777777777777777665431 245566667777777777777777777776653 3456667
Q ss_pred HHHHHHHHhccccccchhhhhhhhh
Q 046446 210 SIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 210 ~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
..+...+.+.|++++|+..++.+.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777777766544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=4.8e-19 Score=139.74 Aligned_cols=227 Identities=11% Similarity=0.061 Sum_probs=192.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|...|+++.+.+ +.+..++..+..+|.+.|+
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 4567889999999999999998863 4578889999999999999999999999999874 3367889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccH---HhHHHH------------HHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDI---QAYSCL------------IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (244)
+++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...|+++.+.. +.+...+..+..+|
T Consensus 110 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECF 187 (450)
T ss_dssp HHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 999999999998865 3344 566655 444889999999999999988764 45788999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHH------------H
Q 046446 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-ASIVSIV------------V 213 (244)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l------------~ 213 (244)
...|++++|.+.|+.+.+.. +.+..++..+...+...|++++|...++++.... |+ ...+..+ .
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753 3468899999999999999999999999998753 43 3444444 7
Q ss_pred HHHHhccccccchhhhhhhhhh
Q 046446 214 DLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
..+.+.|++++|+..|+.+...
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 8999999999999999988664
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.1e-19 Score=138.24 Aligned_cols=228 Identities=9% Similarity=-0.053 Sum_probs=189.1
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+.+.|++++|..+|+++.+.. +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+..+|...|++
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccH
Confidence 456788999999999999998864 4577889999999999999999999999999873 34688999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHH----------hHHHHHHHHHcCCCHHHHHHHHHhcccCCccc--cHHHHHHHHHHHHccC
Q 046446 83 VESVELFRTLRILKCELDIQ----------AYSCLIDGLCKSGRLEIALELFHSLPRGVLVA--DVVTYSIMIHGLYNDG 150 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~ 150 (244)
++|.+.++++.+.. +.+.. .+..+...+...|++++|...++++.+.. +. +..++..+...+...|
T Consensus 150 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 150 QDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCC
Confidence 99999999998764 22222 23445889999999999999999988764 22 6889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhh
Q 046446 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
++++|...++.+.+.. +.+..+|..+..++...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|+
T Consensus 228 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998764 3468899999999999999999999999998864 2357889999999999999999999999
Q ss_pred hhhhhh
Q 046446 231 VHERQE 236 (244)
Q Consensus 231 ~~~~~~ 236 (244)
...+..
T Consensus 306 ~al~~~ 311 (365)
T 4eqf_A 306 TALSLQ 311 (365)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 877654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=9.1e-19 Score=138.16 Aligned_cols=225 Identities=12% Similarity=0.150 Sum_probs=141.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHhhhchHHHHHHHHHHHHHcCCCCChh
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDV---VIHNTL------------FIGLFEIHQVERAFKLFDEMQRDGVAADTR 67 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 67 (244)
...|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|+..|+++.+.. +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 345556666666666666666542 1122 333333 223555666666666666666542 23556
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHH-----
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM----- 142 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 142 (244)
++..+..+|.+.|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+++.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 66667777777777777777777766654 4556677777777777777777777777766542 2233344333
Q ss_pred -------HHHHHccCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 046446 143 -------IHGLYNDGQMDKAHDLFLDMEENAVAPN-----VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210 (244)
Q Consensus 143 -------i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (244)
...+...|++++|...|+.+.+.. |+ ...+..+..++.+.|++++|...++++.+.. +.+...+.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 666777777777777777776532 33 3356667777777777777777777776543 23567777
Q ss_pred HHHHHHHhccccccchhhhhhhhh
Q 046446 211 IVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+..+|...|++++|...|+...+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 777777777777777777776654
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3e-18 Score=129.53 Aligned_cols=226 Identities=10% Similarity=-0.006 Sum_probs=126.1
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhc-hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
..+...|++++|..+++++.+.. +.+...|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 34444555555555555555432 223444555555555555 5555555555555442 22344555555555666666
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++|.+.+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++..
T Consensus 142 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 142 DQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 66666666555543 2334455556666666666666666666655543 334556666666666666666666666665
Q ss_pred HHcC--------CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 163 EENA--------VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 163 ~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+.. .+.+..++..+..++...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+...+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5421 02234456666666666666666666666666543 22455566666666666666666666665443
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.8e-18 Score=129.00 Aligned_cols=228 Identities=9% Similarity=-0.049 Sum_probs=195.7
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-c
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG-Y 81 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~ 81 (244)
...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..++..+...+...| +
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhh
Confidence 456778899999999999998864 4456677788888999999999999999999863 346788999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
+++|.+.+++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999875 4578889999999999999999999999988764 33567788899999999999999999999
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN--------VMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
..+.. +.+...+..+...+...|++++|...+++..+.. ...+..++..+..+|.+.|++++|+..++...
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98764 3467888999999999999999999999988641 13345788999999999999999999998876
Q ss_pred hh
Q 046446 234 RQ 235 (244)
Q Consensus 234 ~~ 235 (244)
+.
T Consensus 264 ~~ 265 (330)
T 3hym_B 264 VL 265 (330)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.6e-18 Score=130.67 Aligned_cols=228 Identities=11% Similarity=-0.011 Sum_probs=188.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 356788999999999999999874 4567788899999999999999999999998874 34788899999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHH---------------HHHHHHcCCCHHHHHHHHHhcccCCccc--cHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSC---------------LIDGLCKSGRLEIALELFHSLPRGVLVA--DVVTYSIMIHG 145 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 145 (244)
++|.+.++++.+.. +.+...+.. .+..+...|++++|...++++.+.. +. +..++..+...
T Consensus 149 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 149 RQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVL 226 (368)
T ss_dssp HHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHH
Confidence 99999999998765 233333321 2334448899999999999988763 22 57899999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccc
Q 046446 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (244)
+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988763 3367889999999999999999999999998764 34678889999999999999999
Q ss_pred hhhhhhhhhhh
Q 046446 226 LPSFTVHERQE 236 (244)
Q Consensus 226 ~~~~~~~~~~~ 236 (244)
...|+......
T Consensus 305 ~~~~~~al~~~ 315 (368)
T 1fch_A 305 VEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99998876643
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=4.7e-18 Score=121.46 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=157.4
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (244)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677788888888999999999999999988763 3367888889999999999999999999998876 5677888889
Q ss_pred HHHHHcC-----------CCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHH
Q 046446 108 IDGLCKS-----------GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGT 176 (244)
Q Consensus 108 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 176 (244)
..++... |++++|...+++..+.. +-+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999988764 3457888899999999999999999999988876 68888899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 177 LIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
+..++...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|+...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999988764 2356778888899999999999999887654
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=7.7e-18 Score=127.17 Aligned_cols=228 Identities=9% Similarity=-0.063 Sum_probs=189.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCH
Confidence 356788999999999999998863 4467788899999999999999999999998873 34778899999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHH--------------HH-HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCL--------------ID-GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 106 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 106 NAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 99999999998764 3344444443 22 3778899999999999988764 446889999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchh
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (244)
..|++++|.+.++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|..
T Consensus 184 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999988764 3367889999999999999999999999988764 3367888999999999999999999
Q ss_pred hhhhhhhhh
Q 046446 228 SFTVHERQE 236 (244)
Q Consensus 228 ~~~~~~~~~ 236 (244)
.++...+..
T Consensus 262 ~~~~a~~~~ 270 (327)
T 3cv0_A 262 QLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 998876543
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=5.2e-18 Score=128.07 Aligned_cols=228 Identities=12% Similarity=-0.020 Sum_probs=188.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHH---------
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIF--------- 72 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------- 72 (244)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+
T Consensus 61 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 61 LGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHH
Confidence 3457888999999999999998873 456778999999999999999999999999886322 33334333
Q ss_pred -----HH-HHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHH
Q 046446 73 -----ID-GLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146 (244)
Q Consensus 73 -----l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (244)
.. .+...|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATL 216 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 22 3778899999999999999876 5678899999999999999999999999988764 44688899999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------ChhhHHHHHHH
Q 046446 147 YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP-----------DASIVSIVVDL 215 (244)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~ 215 (244)
...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+..... +...+..+..+
T Consensus 217 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 99999999999999988764 3367889999999999999999999999988753221 46788899999
Q ss_pred HHhccccccchhhhhhhhh
Q 046446 216 LAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~ 234 (244)
+.+.|+.++|..+++....
T Consensus 296 ~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 9999999999988875543
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.7e-17 Score=123.70 Aligned_cols=220 Identities=10% Similarity=0.070 Sum_probs=174.6
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhCC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA-DTRTYTIFIDGLCKNG 80 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~ 80 (244)
+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 45778889999998886644 2 35677788888888999999999999999998876555 4556667778899999
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHH---HHHHHHHHccCChHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTY---SIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~ 157 (244)
++++|++.+++ +.+..++..+...+.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999987 5678889999999999999999999999988763 443211 223444556689999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccccc-chhhhhhhhhh
Q 046446 158 LFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN-SLPSFTVHERQ 235 (244)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 235 (244)
+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++.+.+.
T Consensus 188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999876 44578889999999999999999999999988764 2367788889999999999866 46777665543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1e-17 Score=128.76 Aligned_cols=228 Identities=15% Similarity=0.027 Sum_probs=187.6
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHH----------
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI---------- 71 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------- 71 (244)
+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcc
Confidence 3567889999999999999998874 457788999999999999999999999999886432 2222221
Q ss_pred -----HHHHHHhCCcHHHHHHHHHHHHHhCCCc-cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH
Q 046446 72 -----FIDGLCKNGYIVESVELFRTLRILKCEL-DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 72 -----ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (244)
.+..+...|++++|...++++.+..... +..++..+...|...|++++|...++++.... +.+..++..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 260 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGAT 260 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 2333448899999999999998875221 58899999999999999999999999988763 4468899999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----------ChhhHHHHHHH
Q 046446 146 LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP----------DASIVSIVVDL 215 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~ 215 (244)
+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...++++.+..... ...++..+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 999999999999999988763 3467889999999999999999999999988642111 26789999999
Q ss_pred HHhccccccchhhhhhhh
Q 046446 216 LAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~ 233 (244)
|...|+.++|..++....
T Consensus 340 ~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 340 LSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHTCGGGHHHHHTTCH
T ss_pred HHHhCChHhHHHhHHHHH
Confidence 999999999988876443
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.3e-17 Score=120.41 Aligned_cols=220 Identities=13% Similarity=0.114 Sum_probs=187.5
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC--CC----hhHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA--AD----TRTYTIFIDGL 76 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~~ll~~~ 76 (244)
...+...|++++|...|++..+.. .+...+..+...+...|++++|+..+++..+.... |+ ..++..+...+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 457788999999999999999886 78889999999999999999999999998775221 12 57889999999
Q ss_pred HhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHH
Q 046446 77 CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 156 (244)
...|++++|.+.+++..+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...|++++|.
T Consensus 90 ~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999998864 443 35666788999999999988764 445778899999999999999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
..++...+... .+..++..+..++...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...++...+..
T Consensus 160 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 160 KAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999987643 367889999999999999999999999998764 3357888999999999999999999998876654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=4.1e-18 Score=130.97 Aligned_cols=226 Identities=10% Similarity=-0.019 Sum_probs=180.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC---------CChhHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA---------ADTRTYTIF 72 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------~~~~~~~~l 72 (244)
+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|...|+++.+.... .....+..+
T Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 105 LGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH
Confidence 4567889999999999999998864 446788999999999999999999999999875211 012233445
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHhCCCc--cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 73 IDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
...+...|++++|.+.++++.+.. +. +..++..+...|...|++++|...|++..+.. +.+..+|..+..+|...|
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGD 261 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 888999999999999999999875 33 68899999999999999999999999988764 456889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CChhhHHHHHHHHHhc
Q 046446 151 QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM-----------PDASIVSIVVDLLAKN 219 (244)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~ 219 (244)
++++|...|+.+.+.. +.+..++..+..++...|++++|...++++.+.... .+...+..+..++...
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence 9999999999998763 235788999999999999999999999998864211 1367888999999999
Q ss_pred cccccchhhhhh
Q 046446 220 EISLNSLPSFTV 231 (244)
Q Consensus 220 g~~~~a~~~~~~ 231 (244)
|+.+.+....+.
T Consensus 341 g~~~~a~~~~~~ 352 (365)
T 4eqf_A 341 DQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHTT
T ss_pred CcHHHHHHHHHh
Confidence 998877766654
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=9.5e-17 Score=122.55 Aligned_cols=228 Identities=10% Similarity=0.038 Sum_probs=188.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 456888999999999999998863 4567789999999999999999999999998873 33678899999999999999
Q ss_pred HHHHHHHHHHHHhCCC---ccHHhHHHH------------HHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCE---LDIQAYSCL------------IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
++|.+.+++..+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 88 ~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 88 DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 99999999998764 3 355555555 578899999999999999988764 456888999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH------------HHHHH
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS------------IVVDL 215 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~ 215 (244)
..|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+... .+...+. .+...
T Consensus 166 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998763 34778899999999999999999999999987532 2333332 23667
Q ss_pred HHhccccccchhhhhhhhhhh
Q 046446 216 LAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+.+.|++++|+..++......
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 889999999999998876643
No 23
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1.2e-16 Score=117.80 Aligned_cols=230 Identities=12% Similarity=0.080 Sum_probs=187.4
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhCC
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD--TRTYTIFIDGLCKNG 80 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~ 80 (244)
...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++..+.+..|+ ..+|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 356788999999999999999873 34556888999999999999999999999988432222 234889999999999
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
++++|.+.+++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|.+.|+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 5677899999999999999999999999998874 4467778887734444569999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHhccccccchhhhh
Q 046446 161 DMEENAVAPNVITFGTLIHGFIRINE---PSKVIELLHKMKEKN-VMPD------ASIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 161 ~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
.+.+... .+...+..+..++...|+ +++|...+++..+.. -.|+ ...+..+...|.+.|++++|...|+
T Consensus 167 ~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9987632 246777778888888888 888999998887542 1233 2577889999999999999999998
Q ss_pred hhhhhh
Q 046446 231 VHERQE 236 (244)
Q Consensus 231 ~~~~~~ 236 (244)
...+..
T Consensus 246 ~al~~~ 251 (272)
T 3u4t_A 246 NILALD 251 (272)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 876543
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=5.6e-17 Score=115.85 Aligned_cols=191 Identities=10% Similarity=0.003 Sum_probs=154.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC---
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN--- 79 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 79 (244)
-..+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..++...
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhh
Confidence 356788999999999999999874 4567788999999999999999999999999874 33677899999999999
Q ss_pred --------CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC
Q 046446 80 --------GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 80 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (244)
|++++|+..+++..+.. |.+...+..+..++...|++++|...|++..+.. .+...+..+..++...|+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC
T ss_pred hhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC
Confidence 99999999999999876 5678889999999999999999999999988776 688899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 152 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
+++|...|+...+.. +.+...+..+...+...|++++|...+++...
T Consensus 167 ~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 167 LDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999998764 23677888899999999999999999887643
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=3.7e-17 Score=121.89 Aligned_cols=219 Identities=8% Similarity=0.013 Sum_probs=178.7
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDV--VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
++.....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45667789999999998876554 4443 3556678999999999999987654 24567788899999999999
Q ss_pred cHHHHHHHHHHHHHhCC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHH
Q 046446 81 YIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (244)
+.++|++.++++...+. |-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988764 44666777888999999999999999998 357889999999999999999999999
Q ss_pred HHHHHcCCCCcHhHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 160 LDMEENAVAPNVITF---GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 160 ~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...+..+..++.+.|++++|...|+......
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998864 553211 12234444569999999999999987 35688899999999999999999999999876654
No 26
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.8e-16 Score=119.19 Aligned_cols=190 Identities=11% Similarity=0.127 Sum_probs=93.0
Q ss_pred HHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHH
Q 046446 40 GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119 (244)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 119 (244)
.+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+..++..+...+...|++++
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444331 1234444444444555555555555555544433 3344445555555555555555
Q ss_pred HHHHHHhcccCCccccHHHHH------------HHHHHHHccCChHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHh
Q 046446 120 ALELFHSLPRGVLVADVVTYS------------IMIHGLYNDGQMDKAHDLFLDMEENAVAPNV----ITFGTLIHGFIR 183 (244)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 183 (244)
|...+++..+.. +.+...+. .+...+.+.|++++|...++.+.+.... +. ..+..+..++..
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 555555444331 11122221 1133455555555555555555543211 11 123334556666
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 184 INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.|++++|...+++..+.. +.+..++..+...|.+.|++++|...|+...+
T Consensus 285 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666542 22455666666666666666666666665544
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=3.5e-16 Score=113.98 Aligned_cols=201 Identities=9% Similarity=-0.076 Sum_probs=159.9
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667778888888889999999988888763 3367788888888888999999999998888765 4567788888888
Q ss_pred HHcCCCHHHHHHHHHhcccCCccc-cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
|...|++++|.+.++++...+..| +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888999999999988887732233 56677888888888899999999988887754 2356778888888888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 190 VIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
|...++++.+.. +.+...+..+...+.+.|+.++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999988887653 346677778888888889998888888877654
No 28
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=4.5e-16 Score=111.19 Aligned_cols=202 Identities=9% Similarity=-0.043 Sum_probs=134.6
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44556666777777777777777777776652 2346667777777777777777777777776654 345666777777
Q ss_pred HHHcC-CCHHHHHHHHHhcccCCccc-cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh
Q 046446 110 GLCKS-GRLEIALELFHSLPRGVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187 (244)
Q Consensus 110 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 187 (244)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++.+.+... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777766622122 355667777777777777777777777665432 2456666777777777777
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 188 SKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777766643213555666666666777777777777766643
No 29
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.2e-16 Score=115.70 Aligned_cols=191 Identities=16% Similarity=0.115 Sum_probs=96.7
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 84 (244)
.+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp ----------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHH
Confidence 3445555555555555555542 2344455555555555556666666555555542 2244555555555555556666
Q ss_pred HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 85 SVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 110 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 110 AKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666555555543 3345555555555555566666655555554432 22445555555555555556656555555554
Q ss_pred cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 165 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
.. +.+..++..+..++...|++++|...++++.+.
T Consensus 188 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 188 QD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 32 123445555555555555555555555555543
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.4e-16 Score=126.17 Aligned_cols=225 Identities=11% Similarity=-0.019 Sum_probs=169.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
-..+.+.|++++|+..|+++.+.. |+...|..+..++...|++++|+..++++.+.+ +.+..++..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 356788999999999999999874 788899999999999999999999999998874 33667889999999999999
Q ss_pred HHHHHHHHHHHHhCCCcc--------------------------------------------------------------
Q 046446 83 VESVELFRTLRILKCELD-------------------------------------------------------------- 100 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~-------------------------------------------------------------- 100 (244)
++|...|+++.+.+. ++
T Consensus 90 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999998876542 11
Q ss_pred -----------------HHhHHHHHHHHHc---CCCHHHHHHHHHhccc-----CCc--------cccHHHHHHHHHHHH
Q 046446 101 -----------------IQAYSCLIDGLCK---SGRLEIALELFHSLPR-----GVL--------VADVVTYSIMIHGLY 147 (244)
Q Consensus 101 -----------------~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~ 147 (244)
...+......+.. .|++++|...|+++.+ ... +.+..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 2223333333333 7888888888888766 210 234567777888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchh
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLP 227 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (244)
..|++++|...++.+.+.. |+...+..+..++...|++++|...++++.... +.+...+..+...|...|++++|+.
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 8888888888888877654 336677777777888888888888888777653 2355677777778888888888887
Q ss_pred hhhhhhh
Q 046446 228 SFTVHER 234 (244)
Q Consensus 228 ~~~~~~~ 234 (244)
.++....
T Consensus 326 ~~~~~~~ 332 (514)
T 2gw1_A 326 DFDKAKE 332 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=4.3e-16 Score=113.52 Aligned_cols=201 Identities=12% Similarity=-0.011 Sum_probs=171.2
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHH
Confidence 456788999999999999998863 4467788999999999999999999999998874 33778899999999999999
Q ss_pred HHHHHHHHHHHHhCC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 83 VESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
++|.+.++++.+.+. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999987322 3467788899999999999999999999988764 34688899999999999999999999999
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIV 209 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 209 (244)
+.+.. +.+...+..+...+...|++++|.+.++++.+.. |+...+
T Consensus 201 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 201 FAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 88753 3467778888899999999999999999998764 444433
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=6.3e-16 Score=110.40 Aligned_cols=204 Identities=10% Similarity=-0.013 Sum_probs=170.8
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC-C
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN-G 80 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~ 80 (244)
+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+... |
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC
Confidence 3467889999999999999998863 4467788999999999999999999999998873 34678899999999999 9
Q ss_pred cHHHHHHHHHHHHHhCC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHH
Q 046446 81 YIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLF 159 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (244)
++++|...++++.+.+. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988322 2346788999999999999999999999988764 345888999999999999999999999
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 046446 160 LDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVS 210 (244)
Q Consensus 160 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (244)
+.+.+.....+...+..+...+...|+.+.+..+++.+.+.. |+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~ 219 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEELQ 219 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHH
Confidence 998876432467778888888899999999999999987643 5544443
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=3.9e-15 Score=109.86 Aligned_cols=216 Identities=8% Similarity=-0.026 Sum_probs=188.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh----hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE----IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 78 (244)
-..+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhC
Confidence 34677889999999999999984 356678888888998 999999999999999875 77889999999999
Q ss_pred ----CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc--
Q 046446 79 ----NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK----SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN-- 148 (244)
Q Consensus 79 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 148 (244)
.+++++|++.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 999999999999998875 67888899999999 999999999999998875 56778888888888
Q ss_pred --cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 046446 149 --DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR----INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK---- 218 (244)
Q Consensus 149 --~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 218 (244)
.+++++|...|+...+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.+
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCc
Confidence 999999999999988764 56778888889999 999999999999999875 36677888899998
Q ss_pred ccccccchhhhhhhhhhh
Q 046446 219 NEISLNSLPSFTVHERQE 236 (244)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~ 236 (244)
.++.++|+..|+...+.+
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999998876654
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.4e-17 Score=129.92 Aligned_cols=228 Identities=11% Similarity=0.003 Sum_probs=195.3
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 456788999999999999998874 447788999999999999999999999998863 34678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++|...+++..+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998875 4577889999999999999999999999987653 346788999999999999999999999998
Q ss_pred HHcCCC-Cc----HhHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 163 EENAVA-PN----VITFGTLIHGFIR---INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 163 ~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+...+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 764211 12 3378899999999 999999999999998764 33677888999999999999999999987766
Q ss_pred hh
Q 046446 235 QE 236 (244)
Q Consensus 235 ~~ 236 (244)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=2.5e-16 Score=113.99 Aligned_cols=203 Identities=11% Similarity=-0.005 Sum_probs=159.3
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
.+...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456677788888999999999999999998863 3468889999999999999999999999998875 56788899999
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChh
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 188 (244)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988764 4467889999999999999999999999988763 336778889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+|...++++.+.. +.+..++..+..+|.+.|++++|...++...+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999998764 3467788999999999999999999999876643
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=2.1e-16 Score=116.48 Aligned_cols=224 Identities=10% Similarity=-0.045 Sum_probs=172.0
Q ss_pred hhhcCChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGI---KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
....|++++|+..|+++.+... +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 4567899999999999988632 1246678888999999999999999999998873 33688899999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++|.+.+++..+.. +.+..++..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...++..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999875 457888999999999999999999999998875 345444555555667779999999999877
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP---DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 163 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.... +++...+ .++..+...++.++|...+.+........ +...+..+...|.+.|++++|...|+.....
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 6642 2333333 35566667777777888777766542111 1466777788888888888888888766553
No 37
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=5.6e-16 Score=124.80 Aligned_cols=227 Identities=15% Similarity=0.023 Sum_probs=191.8
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+...|++++|...|+...+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4677889999999999999987 5668889999999999999999999999998874 346888999999999999999
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
+|.+.+++..+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999876 4567889999999999999999999999988764 4467789999999999999999999999987
Q ss_pred HcCC-----CCcHhHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhh
Q 046446 164 ENAV-----APNVITFGTLIHGFIRI----------NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228 (244)
Q Consensus 164 ~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (244)
+... ......+......+... |++++|...+++..+.. +.+...+..+..+|.+.|++++|...
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 5421 11122244445667777 99999999999998864 33678889999999999999999999
Q ss_pred hhhhhhhh
Q 046446 229 FTVHERQE 236 (244)
Q Consensus 229 ~~~~~~~~ 236 (244)
|+...+..
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 98876643
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=6.7e-16 Score=119.04 Aligned_cols=222 Identities=10% Similarity=0.056 Sum_probs=187.1
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhch-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQ-VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
..+...|++++|+..+++.+... +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+..++...|++
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCH
Confidence 45677899999999999999873 3457789999999999997 99999999999997433 788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc-cCChHHH-----H
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN-DGQMDKA-----H 156 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~ 156 (244)
++|+..|+++.+.. +-+..+|..+..++...|++++|+..++++.+.. +-+...|+.+..++.. .|..++| +
T Consensus 183 ~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 183 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 99999999999987 5788999999999999999999999999998875 4478899999999999 6665777 4
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcc---------ccccc
Q 046446 157 DLFLDMEENAVAPNVITFGTLIHGFIRIN--EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE---------ISLNS 225 (244)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a 225 (244)
..++...+... -+...|..+...+...| ++++|.+.+.++ +. -..+...+..+...|.+.| ..++|
T Consensus 261 ~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A 337 (382)
T 2h6f_A 261 QYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337 (382)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 88888877542 26778888888888888 689999999887 33 2346678889999998875 25889
Q ss_pred hhhhhhh
Q 046446 226 LPSFTVH 232 (244)
Q Consensus 226 ~~~~~~~ 232 (244)
+.+|+.+
T Consensus 338 ~~~~~~l 344 (382)
T 2h6f_A 338 LELCEIL 344 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 39
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.2e-17 Score=128.46 Aligned_cols=198 Identities=12% Similarity=0.056 Sum_probs=74.5
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
|..++.+.|++++|++.|.+ .+|...|..++..+...|++++|+.+++..++. .+++.+.+.++.+|.+.|+
T Consensus 38 La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~ 109 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNR 109 (449)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCC
Confidence 34556666666666666643 235556666666666666666666655554442 3345566666666666666
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.+..
T Consensus 110 l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 110 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp HHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 666666553 255567777777777777777777777655 2567777777777777777777776
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
+ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++++++.+++....
T Consensus 174 A------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 174 A------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp H------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred c------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 6 2677778888888888888777544332 223333455677788888888888877776543
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.72 E-value=3.6e-15 Score=120.09 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=96.0
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
+..+...+...|++++|.+.+++..+.. |+..++..+...+...|++++|...+++..+.. +.+..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 3333444455555555555555555543 335555556666666666666666666655442 2345566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhh
Q 046446 149 DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPS 228 (244)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (244)
.|++++|...++...+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..
T Consensus 323 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666666666666665432 234556666666666777777777776666543 22445666666677777777777777
Q ss_pred hhhhhhh
Q 046446 229 FTVHERQ 235 (244)
Q Consensus 229 ~~~~~~~ 235 (244)
|+...+.
T Consensus 401 ~~~a~~~ 407 (537)
T 3fp2_A 401 YDIAKRL 407 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=1.6e-15 Score=111.72 Aligned_cols=218 Identities=10% Similarity=-0.108 Sum_probs=170.2
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+..++..+...+.+.|+
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhcc
Confidence 3467888999999999999998874 4467889999999999999999999999999873 3367889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
+++|.+.++++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...+..
T Consensus 127 ~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998864 444444455556677799999999998776553 3344444 477778888899999999988
Q ss_pred HHHcCCCC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhh
Q 046446 162 MEENAVAP---NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSF 229 (244)
Q Consensus 162 ~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (244)
..+..... +..++..+...+...|++++|...+++..... |+. +.....++...|++++|++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 76532111 25778889999999999999999999998764 432 223356778889999998876
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=4e-15 Score=118.36 Aligned_cols=218 Identities=11% Similarity=-0.065 Sum_probs=184.4
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchH-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHH
Q 046446 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV-ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELF 89 (244)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 89 (244)
.+++++..++...... +.+...+..+...+...|++ ++|+..|++..+.. +-+..+|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777666552 34677889999999999999 99999999998873 336789999999999999999999999
Q ss_pred HHHHHhCCCccHHhHHHHHHHHHcC---------CCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc--------CCh
Q 046446 90 RTLRILKCELDIQAYSCLIDGLCKS---------GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND--------GQM 152 (244)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~ 152 (244)
++..+.. |+..++..+...|... |++++|...|++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999864 6678999999999999 99999999999988764 44688999999999988 999
Q ss_pred HHHHHHHHHHHHcCCC--CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhh
Q 046446 153 DKAHDLFLDMEENAVA--PNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
++|...|+...+.... .+...|..+..++...|++++|...|++..+.. +-+...+..+..++...|++++|++.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999875320 378889999999999999999999999998764 2256678889999999999999998777
Q ss_pred hhhh
Q 046446 231 VHER 234 (244)
Q Consensus 231 ~~~~ 234 (244)
.+..
T Consensus 317 ~~~~ 320 (474)
T 4abn_A 317 KTKP 320 (474)
T ss_dssp TCCH
T ss_pred cccC
Confidence 6544
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=3.6e-14 Score=98.40 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=140.9
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
++.+|..+...+...|++++|+..|++..+... -+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 667888899999999999999999999888743 367788889999999999999999999988775 456777888888
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
.+...++++.|...+.+..... +.+...+..+...+...|++++|.+.|+...+... .+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 8999999999999998877654 44677888889999999999999999998887642 367788888899999999999
Q ss_pred HHHHHHHHHHC
Q 046446 190 VIELLHKMKEK 200 (244)
Q Consensus 190 a~~~~~~~~~~ 200 (244)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988875
No 44
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=2.1e-17 Score=127.18 Aligned_cols=188 Identities=14% Similarity=0.110 Sum_probs=67.4
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
-+.|+.++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 45688999999998882 3359999999999999999999999652 58889999999999999999999
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
.+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999887774 367789999999999999999999999976
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhh
Q 046446 167 VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFT 230 (244)
Q Consensus 167 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (244)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 47999999999999999999999988 378999999999999999988865443
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=5.9e-14 Score=105.50 Aligned_cols=219 Identities=10% Similarity=0.017 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhh-------hchH-------HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHH
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFE-------IHQV-------ERAFKLFDEMQRDGVAA-DTRTYTIFIDGLC 77 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~ 77 (244)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 68889999998863 4567788887777653 4664 8999999999884 234 5568999999999
Q ss_pred hCCcHHHHHHHHHHHHHhCCCccHH-hHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH-ccCChHHH
Q 046446 78 KNGYIVESVELFRTLRILKCELDIQ-AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY-NDGQMDKA 155 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 155 (244)
+.|++++|.++|++..+.. +.+.. +|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999853 22344 89999999999999999999999998764 344555654444322 37999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHhccccccchhhhhhh
Q 046446 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN-VMP--DASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++.+
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988753 2367888899999999999999999999999863 455 3567888899999999999999998877
Q ss_pred hhhh
Q 046446 233 ERQE 236 (244)
Q Consensus 233 ~~~~ 236 (244)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6543
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=5.6e-14 Score=97.44 Aligned_cols=167 Identities=11% Similarity=0.001 Sum_probs=147.1
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
++.+|..+...|.+.|++++|++.|++..+.. |-+..++..+..+|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 67889999999999999999999999999886 5688899999999999999999999999987664 346778888889
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccccc
Q 046446 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (244)
.+...++++.+...+....+.. +.+...+..+..++.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988764 3367788899999999999999999999998864 2367889999999999999999
Q ss_pred chhhhhhhhhh
Q 046446 225 SLPSFTVHERQ 235 (244)
Q Consensus 225 a~~~~~~~~~~ 235 (244)
|+..|+...+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999877654
No 47
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.1e-14 Score=109.06 Aligned_cols=31 Identities=6% Similarity=-0.122 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 205 DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 205 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
+..++..+..+|.+.|++++|...|+...+.
T Consensus 277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 277 VTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999877653
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.1e-14 Score=103.66 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=158.3
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCC--CCCC----hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKG--IKPD----VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 75 (244)
+...+...|++++|...+++..+.. ..++ ...+..+...+...|++++|...|++..+. .|+. ..
T Consensus 44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~ 114 (258)
T 3uq3_A 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DI 114 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HH
Confidence 3457889999999999999988752 1112 578889999999999999999999999885 3443 34
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
+...|++++|.+.++++.... +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 115 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 115 LTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHH
Confidence 666788999999999998865 4567789999999999999999999999988764 44688999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 156 HDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
...++...+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 193 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 193 IADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999998764 335788999999999999999999999998764
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=1e-14 Score=109.23 Aligned_cols=198 Identities=14% Similarity=0.039 Sum_probs=158.6
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhC-------CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc------CC-CCChh
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSK-------GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD------GV-AADTR 67 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~ 67 (244)
+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+. +. +....
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 356788999999999999998873 22334567888999999999999999999998764 22 22456
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHh------C-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC------C-cc
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRIL------K-CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG------V-LV 133 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~ 133 (244)
++..+...+...|++++|.+.+++..+. + .+....++..+...+...|++++|..++++.... + .+
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 7888999999999999999999998764 2 1334567888999999999999999999987653 1 12
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHHc------------------------------------------------
Q 046446 134 ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN------------------------------------------------ 165 (244)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------------------------------ 165 (244)
....++..+...|...|++++|.+.++.+.+.
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 34567889999999999999999999988752
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 166 AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 166 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
..+.+..++..+..+|.+.|++++|...+++..+
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122456688889999999999999999998765
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=7.9e-13 Score=97.45 Aligned_cols=192 Identities=10% Similarity=-0.041 Sum_probs=168.4
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CCcHHHHHHHHHHHHHhCCCccHHhHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK----NGYIVESVELFRTLRILKCELDIQAYS 105 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (244)
+...+..+...+...|++++|...|++..+. -+..++..+...|.. .+++++|.+.|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667888888899999999999999999883 356788889999999 999999999999998875 678888
Q ss_pred HHHHHHHc----CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 046446 106 CLIDGLCK----SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN----DGQMDKAHDLFLDMEENAVAPNVITFGTL 177 (244)
Q Consensus 106 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 177 (244)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999999 999999999999998875 77889999999999 999999999999998865 56677888
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----ccccccchhhhhhhhhhh
Q 046446 178 IHGFIR----INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK----NEISLNSLPSFTVHERQE 236 (244)
Q Consensus 178 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 236 (244)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|+...+.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 888887 899999999999998875 56778889999999 999999999998776543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=2.5e-13 Score=99.85 Aligned_cols=202 Identities=11% Similarity=-0.017 Sum_probs=162.0
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc--cHHhHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCLI 108 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll 108 (244)
...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..+.+..+ ...+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667778889999999999999998863 2356689999999999999999999999998843111 133488999
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChh
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 188 (244)
..+...|++++|...|++..+.. +.+..++..+...|...|++++|...++...+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 3467899999999999999999999999988752 335667777773444566999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhccc---cccchhhhhhhhhhh
Q 046446 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHERQE 236 (244)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~ 236 (244)
+|...+++..+.. +.+...+..+..++...|+ .++|...++...+..
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 9999999998864 2346777788888888888 888998888776654
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.60 E-value=2.6e-13 Score=93.68 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667777888888888888888877652 3366778888888888888888888888887764 4567778888888
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 190 (244)
+...|++++|...++++.... +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 3467778888888888888888888888877653 33567777888888888888888
Q ss_pred HHHHHHHHHC
Q 046446 191 IELLHKMKEK 200 (244)
Q Consensus 191 ~~~~~~~~~~ 200 (244)
...+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877654
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=4.5e-14 Score=112.29 Aligned_cols=188 Identities=11% Similarity=-0.058 Sum_probs=163.3
Q ss_pred hhhhhhcCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC--
Q 046446 3 INGYCKNKEI-EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN-- 79 (244)
Q Consensus 3 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-- 79 (244)
-..+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|...|++..+. .|+...+..+...+...
T Consensus 109 g~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQT 185 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCC
T ss_pred HHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhcc
Confidence 3567788999 99999999998873 345788999999999999999999999999886 47788999999999999
Q ss_pred -------CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC--------CCHHHHHHHHHhcccCCcc---ccHHHHHH
Q 046446 80 -------GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS--------GRLEIALELFHSLPRGVLV---ADVVTYSI 141 (244)
Q Consensus 80 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~---~~~~~~~~ 141 (244)
|++++|++.+++..+.. +.+...|..+..+|... |++++|...|++..+.. + .+...|..
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 263 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLN 263 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHH
T ss_pred CChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHH
Confidence 99999999999999876 56788999999999998 99999999999988763 3 47889999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
+..+|...|++++|.+.|+...+... .+...+..+..++...|++++|.+.+.+
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999887642 3566788888889999999888876544
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=2.4e-13 Score=104.86 Aligned_cols=197 Identities=11% Similarity=-0.026 Sum_probs=167.7
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc-HHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY-IVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
...|..+...+...|++++|+..+++..+... -+..+|+.+..++...|+ +++|+..|++..+.. +-+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45678888888999999999999999998743 367889999999999996 999999999999987 568899999999
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCChh
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR-INEPS 188 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~ 188 (244)
++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++.+.+.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998775 457899999999999999999999999999986543 77889999999988 66657
Q ss_pred HH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcc--ccccchhhhhhh
Q 046446 189 KV-----IELLHKMKEKNVMPDASIVSIVVDLLAKNE--ISLNSLPSFTVH 232 (244)
Q Consensus 189 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~ 232 (244)
+| +..+++...... -+...|..+...+.+.| ++++|++.+..+
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77 478888877542 25678888888888888 578888887766
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=1.4e-13 Score=106.51 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=175.2
Q ss_pred hhhhhcCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-C-----ChhHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSK----GIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-A-----DTRTYTIF 72 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~~~~~~l 72 (244)
..+...|++++|...|++..+. +-++ ...++..+...+...|+++.|+..+++..+.... + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3567889999999999999874 2112 3467888899999999999999999988764111 1 23578889
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHhCC-----CccHHhHHHHHHHHHcCCCHHHHHHHHHhccc-----CCccccHHHHHHH
Q 046446 73 IDGLCKNGYIVESVELFRTLRILKC-----ELDIQAYSCLIDGLCKSGRLEIALELFHSLPR-----GVLVADVVTYSIM 142 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 142 (244)
...|...|++++|.+.+++..+... +....++..+..+|...|++++|...+++..+ ...+....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 9999999999999999998875421 11234788899999999999999999998776 3223457788999
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCCcHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEEN----AVAPNVITFGTLIHGFIRINE---PSKVIELLHKMKEKNVMP-DASIVSIVVD 214 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 214 (244)
...|...|++++|...++...+. +-+.....+..+...+...|+ +++|..++++. +..| ....+..+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 99999999999999999987643 111123335667778888888 66677766654 3333 3456778999
Q ss_pred HHHhccccccchhhhhhhhhhh
Q 046446 215 LLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
.|.+.|++++|...++......
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876644
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.59 E-value=2.4e-13 Score=93.87 Aligned_cols=159 Identities=15% Similarity=0.077 Sum_probs=139.4
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 456788999999999999988763 4467788899999999999999999999998873 34678889999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++..
T Consensus 93 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998875 5678889999999999999999999999987764 446789999999999999999999999998
Q ss_pred HHc
Q 046446 163 EEN 165 (244)
Q Consensus 163 ~~~ 165 (244)
.+.
T Consensus 171 ~~~ 173 (186)
T 3as5_A 171 NEL 173 (186)
T ss_dssp HHH
T ss_pred HHc
Confidence 754
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1e-12 Score=98.67 Aligned_cols=190 Identities=11% Similarity=0.055 Sum_probs=155.5
Q ss_pred hcCCh-------hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC-hh-HHHHHHHHHHh
Q 046446 8 KNKEI-------EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD-TR-TYTIFIDGLCK 78 (244)
Q Consensus 8 ~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~ 78 (244)
+.|++ ++|..+|++....-.+-+...|..++..+...|++++|..+|++..+. .|+ .. +|..++..+.+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHH
Confidence 45776 899999999998311335668999999999999999999999999984 454 33 89999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHH-cCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHH
Q 046446 79 NGYIVESVELFRTLRILKCELDIQAYSCLIDGLC-KSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (244)
.|++++|..+|++..+.. +.+...|........ ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..
T Consensus 147 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999865 345556654444432 3799999999999987653 3468899999999999999999999
Q ss_pred HHHHHHHcC-CCC--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 158 LFLDMEENA-VAP--NVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 158 ~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
+|+...... ..| ....|..++....+.|+.+.|..+++++.+..
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 999999863 355 35678888999899999999999999988753
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=2.8e-13 Score=112.32 Aligned_cols=166 Identities=14% Similarity=0.017 Sum_probs=145.0
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
+...|+.+...+.+.|++++|+..|++..+... -+..++..+..+|.+.|++++|++.|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 467899999999999999999999999988632 257889999999999999999999999999876 567889999999
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
+|...|++++|.+.|++..+.. +-+...|+.+..+|...|++++|.+.|++..+... -+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999988764 34688999999999999999999999999887642 257788999999999999999
Q ss_pred HHHHHHHHHH
Q 046446 190 VIELLHKMKE 199 (244)
Q Consensus 190 a~~~~~~~~~ 199 (244)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 59
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.58 E-value=6.9e-14 Score=103.12 Aligned_cols=228 Identities=10% Similarity=-0.038 Sum_probs=160.4
Q ss_pred hhhcCChhHHHHHHHHHHhC-------CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc------CCCC-ChhHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSK-------GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD------GVAA-DTRTYTI 71 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ 71 (244)
....|++++|+..|++..+. ..+....++..+...+...|++++|+..+++..+. +..| ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34568888888888877652 21234567888999999999999999999998765 2222 3567889
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHhC-------CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC------C-ccccHH
Q 046446 72 FIDGLCKNGYIVESVELFRTLRILK-------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG------V-LVADVV 137 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 137 (244)
+...+...|++++|.+.+++..+.. .+....++..+...|...|++++|...+++..+. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987641 1345677899999999999999999999987654 1 123467
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHH---C-C--CC
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEEN-------AVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKE---K-N--VM 203 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~-~--~~ 203 (244)
++..+...|...|++++|...+++..+. ...+. ...+..+.......+....+.. +..+.. . + ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCH
Confidence 8889999999999999999999988753 12222 2333333334443333333322 222111 1 1 12
Q ss_pred CChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 204 PDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
....++..+...|.+.|++++|...|+...+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345778899999999999999999987654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=5e-14 Score=109.80 Aligned_cols=231 Identities=12% Similarity=0.035 Sum_probs=174.7
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhhhchHHHHHHHHHHHHHc----C-CCCChhHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDV----VIHNTLFIGLFEIHQVERAFKLFDEMQRD----G-VAADTRTYTIFID 74 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~ 74 (244)
..+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++..+. + .+....++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 46788899999999999998863 2232 46888888999999999999999987654 1 1223567888899
Q ss_pred HHHhCCcHHHHHHHHHHHHHhC-----CCccHHhHHHHHHHHHcCCC-----------------HHHHHHHHHhcccC--
Q 046446 75 GLCKNGYIVESVELFRTLRILK-----CELDIQAYSCLIDGLCKSGR-----------------LEIALELFHSLPRG-- 130 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~-- 130 (244)
.|...|++++|...+++..+.. .+....++..+...|...|+ +++|...+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876541 12345578888899999999 99999888876432
Q ss_pred --C-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046446 131 --V-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-PN----VITFGTLIHGFIRINEPSKVIELLHKMKEKNV 202 (244)
Q Consensus 131 --~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 202 (244)
+ ......++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1 1223457888889999999999999999887643110 11 23677888899999999999999988775311
Q ss_pred --C---CChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 203 --M---PDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 203 --~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
. ....++..+...|...|++++|...++.....
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 12467778888999999999999988876553
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=3.5e-12 Score=91.44 Aligned_cols=123 Identities=15% Similarity=0.010 Sum_probs=57.5
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
+...|++++|+..|+...+...+++...+..+..++...|++++|+..|++..+... -+..++..+..++...|++++|
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHHH
Confidence 444455555555555554442113444444444445555555555555555544321 1334444455555555555555
Q ss_pred HHHHHHHHHhCCCccH-------HhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 86 VELFRTLRILKCELDI-------QAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
++.+++..+.. +.+. ..|..+...+...|++++|...|++..+.
T Consensus 96 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 96 IATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 55555554433 2222 23444444445555555555555554443
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=8.6e-13 Score=109.41 Aligned_cols=166 Identities=14% Similarity=-0.025 Sum_probs=146.9
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
+..+++.|...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999999876 5678899999999999999999999999988764 345889999999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccccc
Q 046446 145 GLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (244)
++...|++++|.+.|++..+... -+...|..+..++...|++++|+..|++..+... -+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887642 2678899999999999999999999999988642 256788999999999999999
Q ss_pred chhhhhhhhh
Q 046446 225 SLPSFTVHER 234 (244)
Q Consensus 225 a~~~~~~~~~ 234 (244)
|.+.++...+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=1.9e-13 Score=100.69 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=121.9
Q ss_pred hhchHHHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh------C-CCccHHhHHHHH
Q 046446 43 EIHQVERAFKLFDEMQR-------DGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL------K-CELDIQAYSCLI 108 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll 108 (244)
..|+++.|+.++++..+ ...+....++..+...+...|++++|...+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 222334678889999999999999999999998764 2 234566789999
Q ss_pred HHHHcCCCHHHHHHHHHhcccC------C-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-cHhHH
Q 046446 109 DGLCKSGRLEIALELFHSLPRG------V-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN------AVAP-NVITF 174 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~ 174 (244)
..|...|++++|...+++.... . .+....++..+...|...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999987653 1 1334678889999999999999999999998764 1122 35678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 175 GTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 175 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
..+...+...|++++|...+++..+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999998753
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2.1e-13 Score=102.82 Aligned_cols=231 Identities=14% Similarity=0.063 Sum_probs=173.0
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCCC-ChhHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPD----VVIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVAA-DTRTYTIFID 74 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~ 74 (244)
..+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +..| ...++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 46788999999999999998863 223 357788889999999999999999987543 2222 2567888899
Q ss_pred HHHhCCcHHHHHHHHHHHHHhCC-Cc----cHHhHHHHHHHHHcCCC--------------------HHHHHHHHHhccc
Q 046446 75 GLCKNGYIVESVELFRTLRILKC-EL----DIQAYSCLIDGLCKSGR--------------------LEIALELFHSLPR 129 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~ 129 (244)
.+...|++++|...+++..+... .+ ...++..+...+...|+ +++|...+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765321 11 13478888899999999 9999988887643
Q ss_pred C----C-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CC----cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 130 G----V-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV-AP----NVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 130 ~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
. + .+.....+..+...+...|++++|...++...+... .+ ...++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1 122245778888899999999999999988764210 01 123677888889999999999999988764
Q ss_pred CCCC-CC----hhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 200 KNVM-PD----ASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 200 ~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.... ++ ..++..+...|...|++++|...++.....
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3110 11 557778888999999999999988876543
No 65
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.52 E-value=4.7e-11 Score=95.35 Aligned_cols=207 Identities=10% Similarity=0.054 Sum_probs=116.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh----hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CC
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE----IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK----NG 80 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 80 (244)
.+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| ++..+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 566677777777666653 44555556666665 666777777776666553 44555556666665 56
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc----cCCh
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCK----SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN----DGQM 152 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 152 (244)
++++|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 6666666666666544 34455555555554 556666666666655543 45555555555555 5666
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cccccc
Q 046446 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIR----INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK----NEISLN 224 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 224 (244)
++|.+.|+...+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 66666666555542 33444444444443 455555555555555443 23334444444444 445555
Q ss_pred chhhhhhhh
Q 046446 225 SLPSFTVHE 233 (244)
Q Consensus 225 a~~~~~~~~ 233 (244)
|+..|+...
T Consensus 278 A~~~~~~a~ 286 (490)
T 2xm6_A 278 ALEWYRKSA 286 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=5.4e-14 Score=109.60 Aligned_cols=233 Identities=14% Similarity=0.023 Sum_probs=177.5
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC----CC-CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc----C-CCCChhHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK----GI-KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD----G-VAADTRTYTIF 72 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~l 72 (244)
...|...|++++|...+++..+. +- +.....+..+...+...|++++|...+++..+. + .+....++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 45678899999999999987653 11 223457788889999999999999999987654 1 11234578888
Q ss_pred HHHHHhCCc-----------------HHHHHHHHHHHHHh----CC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 73 IDGLCKNGY-----------------IVESVELFRTLRIL----KC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 73 l~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
...|...|+ +++|.+.+++..+. +. +....++..+...|...|++++|...+++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999 99999998887542 11 223457888899999999999999999987653
Q ss_pred C-----ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 131 V-----LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA-----PNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 131 ~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
. .......+..+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++....
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 0111337888999999999999999999987653110 12467788889999999999999999988753
Q ss_pred C----C-CCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 201 N----V-MPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 201 ~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
. - .....++..+...|.+.|++++|...++...+.
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 1 112457788999999999999999999876543
No 67
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.51 E-value=5.5e-11 Score=94.96 Aligned_cols=207 Identities=15% Similarity=0.095 Sum_probs=114.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh----hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CC
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE----IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK----NG 80 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 80 (244)
.+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 566777777777766654 44455555555555 566777777776666553 44555556666655 55
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc----cCCh
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCK----SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN----DGQM 152 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 152 (244)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 6666666666665543 44555555555555 566666666666655543 34445555555543 5556
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----cccc
Q 046446 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIR----INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-----EISL 223 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~ 223 (244)
++|.++|+...+.| +...+..+...+.. .+++++|..+|++..+.| +...+..+...|... ++.+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 66666665555432 33344444444444 455555555555555443 233444444444444 4555
Q ss_pred cchhhhhhhh
Q 046446 224 NSLPSFTVHE 233 (244)
Q Consensus 224 ~a~~~~~~~~ 233 (244)
+|+..|+...
T Consensus 314 ~A~~~~~~a~ 323 (490)
T 2xm6_A 314 QAISWYTKSA 323 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=2e-12 Score=99.82 Aligned_cols=227 Identities=10% Similarity=0.010 Sum_probs=171.8
Q ss_pred hhhhcCChhHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCC-----CC-ChhHHHHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGI-KP----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV-----AA-DTRTYTIFI 73 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~-~~~~~~~ll 73 (244)
.+...|++++|+..|++..+... .+ ...++..+...+...|+++.|...+++..+... .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 45688999999999999886511 12 245778888999999999999999998876311 11 245788899
Q ss_pred HHHHhCCcHHHHHHHHHHHHHh----CCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHhccc-----CCccccHHHHHHHH
Q 046446 74 DGLCKNGYIVESVELFRTLRIL----KCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPR-----GVLVADVVTYSIMI 143 (244)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li 143 (244)
..|...|++++|.+.+++..+. +-+ ....++..+..+|...|++++|...+++... .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 9999999999999999987653 111 2245688899999999999999999998876 43 33477888999
Q ss_pred HHHHccCChHHHHHHHHHHHHcCC----CCcHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 046446 144 HGLYNDGQMDKAHDLFLDMEENAV----APNVITFGTLIHGFIRINE---PSKVIELLHKMKEKNVMP-DASIVSIVVDL 215 (244)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 215 (244)
..+.+.|++++|...++...+... +.....+..+...+...++ +.+|...+++ .+..| ....+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 999999999999999999876422 2223445566666777788 6667766665 33222 34566789999
Q ss_pred HHhccccccchhhhhhhhhh
Q 046446 216 LAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~ 235 (244)
|.+.|++++|...|+.....
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999877653
No 69
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=105.78 Aligned_cols=231 Identities=13% Similarity=0.059 Sum_probs=170.8
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCCC-ChhHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPD----VVIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVAA-DTRTYTIFID 74 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~ 74 (244)
..+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...+++.... +..| ...++..+..
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 46778899999999999998863 223 356788888999999999999999987543 2222 2457788888
Q ss_pred HHHhCCcHHHHHHHHHHHHHhCC-----CccHHhHHHHHHHHHcCCC--------------------HHHHHHHHHhccc
Q 046446 75 GLCKNGYIVESVELFRTLRILKC-----ELDIQAYSCLIDGLCKSGR--------------------LEIALELFHSLPR 129 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~ 129 (244)
.+...|++++|...+++..+... .....++..+...|...|+ +++|...+++...
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765321 1124478888889999999 9999888877543
Q ss_pred C----C-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 130 G----V-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV-APN----VITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 130 ~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
. + .+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++...
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 1 122245778888889999999999999988764210 112 23677888888899999999999988764
Q ss_pred C----CCCC-ChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 200 K----NVMP-DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 200 ~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
. +-.+ ...++..+...|...|++++|...++.....
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3 1111 1457778888899999999998888876553
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=9.9e-12 Score=89.06 Aligned_cols=173 Identities=12% Similarity=0.009 Sum_probs=147.2
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.+++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888889999999999999999999988654788888889999999999999999999999876 45788899999
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCccccH-------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---HhHHHHHH
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLVADV-------VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN---VITFGTLI 178 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 178 (244)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|+...+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999988753 2234 56888999999999999999999998874 454 56777888
Q ss_pred HHHHhcCCh---------------------------hHHHHHHHHHHHCCCCCChh
Q 046446 179 HGFIRINEP---------------------------SKVIELLHKMKEKNVMPDAS 207 (244)
Q Consensus 179 ~~~~~~g~~---------------------------~~a~~~~~~~~~~~~~~~~~ 207 (244)
.++...|+. ++|...+++..+.. |+..
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~--p~~~ 214 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS--PNRT 214 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCH
Confidence 888888877 89999999998864 5443
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=106.71 Aligned_cols=233 Identities=12% Similarity=0.002 Sum_probs=176.0
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-CC----hhHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK----GIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-AD----TRTYTIF 72 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l 72 (244)
...+...|++++|...+++.... +-.| ....+..+...+...|++++|...+++..+.... ++ ..++..+
T Consensus 54 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45788899999999999987543 2122 2456788888999999999999999988654110 12 4478888
Q ss_pred HHHHHhCCc--------------------HHHHHHHHHHHHHh----C-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhc
Q 046446 73 IDGLCKNGY--------------------IVESVELFRTLRIL----K-CELDIQAYSCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 73 l~~~~~~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
...+...|+ +++|.+.+++..+. + .+....++..+...|...|++++|...+++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999 99999999887543 1 1223456888899999999999999999887
Q ss_pred ccC----Cc-cccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-cHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 128 PRG----VL-VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA----VAP-NVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 128 ~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
.+. +. .....++..+...+...|++++|...++...+.. ..+ ...++..+...+...|++++|...+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 643 11 1123478889999999999999999999876421 111 1457788889999999999999999987
Q ss_pred HHCCC----CC-ChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 198 KEKNV----MP-DASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 198 ~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.+... .+ ...++..+...|.+.|++++|...++...+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 75311 11 1557788999999999999999998876543
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=2.5e-13 Score=102.42 Aligned_cols=233 Identities=13% Similarity=0.018 Sum_probs=175.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCC----hhHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK----GIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV-AAD----TRTYTIF 72 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l 72 (244)
...+...|++++|.+.+++.... +..| ....+..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 50 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 45778899999999999987553 2122 255778888899999999999999998765411 112 3478888
Q ss_pred HHHHHhCCc--------------------HHHHHHHHHHHHHh----C-CCccHHhHHHHHHHHHcCCCHHHHHHHHHhc
Q 046446 73 IDGLCKNGY--------------------IVESVELFRTLRIL----K-CELDIQAYSCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 73 l~~~~~~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
...+...|+ +++|.+.+++..+. + .+....++..+...+...|++++|...+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp HHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999 99999999886542 1 1223457888889999999999999999887
Q ss_pred ccCC-----ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----HhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 128 PRGV-----LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV-APN----VITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 128 ~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
.+.. ......++..+...+...|++++|...++...+... .++ ..++..+...+...|++++|...+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6431 111234788889999999999999999998764211 011 456778888999999999999999987
Q ss_pred HHCC-----CCCChhhHHHHHHHHHhccccccchhhhhhhhhh
Q 046446 198 KEKN-----VMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQ 235 (244)
Q Consensus 198 ~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (244)
.... ......++..+...|.+.|++++|...++...+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6531 1112457778999999999999999999877654
No 73
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=2.6e-11 Score=97.83 Aligned_cols=219 Identities=10% Similarity=0.016 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhh-------hchHH-------HHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFE-------IHQVE-------RAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 78 (244)
++|..+|++..... +.+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36777888887752 4467788888887765 68876 899999998863233457889999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCCccH-HhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH-HHccCChHHHH
Q 046446 79 NGYIVESVELFRTLRILKCELDI-QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG-LYNDGQMDKAH 156 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~ 156 (244)
.|++++|.++|+++.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 999999999999999853 2233 589999999999999999999999998763 2233333332222 33689999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNV-MPD--ASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
.+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+....+.|+.+.+..+++.+.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987653 23678899999999999999999999999998642 332 3477777888888999999888887765
Q ss_pred hh
Q 046446 234 RQ 235 (244)
Q Consensus 234 ~~ 235 (244)
+.
T Consensus 491 ~~ 492 (530)
T 2ooe_A 491 TA 492 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=5.8e-12 Score=93.87 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=142.7
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC---Cc--cHHh
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRD----GVAAD-TRTYTIFIDGLCKNGYIVESVELFRTLRILKC---EL--DIQA 103 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 103 (244)
|......|...|++++|...|.+..+. |.+++ ..+|+.+..+|.+.|++++|+..+++..+... .+ -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333456677889999999999887653 32222 56889999999999999999999998875421 11 1457
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHhcccCC----ccc-cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcH------
Q 046446 104 YSCLIDGLCKS-GRLEIALELFHSLPRGV----LVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV------ 171 (244)
Q Consensus 104 ~~~ll~~~~~~-~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------ 171 (244)
++.+...|... |++++|...|++..+.. ..+ ...+++.+...+...|++++|...|+...+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88899999996 99999999999876531 011 1456888999999999999999999998875433222
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh------hhHHHHHHHHH--hccccccchhhhhhhh
Q 046446 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA------SIVSIVVDLLA--KNEISLNSLPSFTVHE 233 (244)
Q Consensus 172 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 233 (244)
..|..+..++...|++++|...+++..+. .|+. ..+..++.+|. ..+++++|+..|+.+.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 15677778888999999999999998764 2321 23445566664 3456777777776543
No 75
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=2.1e-11 Score=96.62 Aligned_cols=192 Identities=10% Similarity=-0.050 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC-----------
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS----------- 114 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 114 (244)
++++|...+++..... +.+..++..+...|...|++++|...+++..+.. |.+..++..+..+|...
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555444432 2244445555555555566666666665555543 23344444444433211
Q ss_pred --------CCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHh--HHHHHHH-HHHh
Q 046446 115 --------GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI--TFGTLIH-GFIR 183 (244)
Q Consensus 115 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~ 183 (244)
+..++|...++...... +.+..++..+...|...|++++|...|+...+....|... .+..+.. ....
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 12344444444444332 2234456777888889999999999999988754433221 2222222 2346
Q ss_pred cCChhHHHHHHHHHHHCC-----------------------CCCChhhHHHHHHHHHhccccccchhhhhhhhhhhcccc
Q 046446 184 INEPSKVIELLHKMKEKN-----------------------VMPDASIVSIVVDLLAKNEISLNSLPSFTVHERQEEVDE 240 (244)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 240 (244)
.|++++|+..|.+..+.. -+.+..++..+..+|...|++++|++.|+...+.+...|
T Consensus 385 ~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp SSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 789999999888776532 123567888999999999999999999998877665444
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=2.9e-11 Score=88.46 Aligned_cols=197 Identities=9% Similarity=-0.013 Sum_probs=142.9
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC--CccHHh
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD---TRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELDIQA 103 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 103 (244)
.+...+......+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|++..+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35566667777788889999999999988876322 3 56777888888899999999999998887631 123456
Q ss_pred HHHHHHHHHc--------CCCHHHHHHHHHhcccCCccccHHHH-----------------HHHHHHHHccCChHHHHHH
Q 046446 104 YSCLIDGLCK--------SGRLEIALELFHSLPRGVLVADVVTY-----------------SIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 104 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~ 158 (244)
+..+..++.. .|++++|...|+++.+.. +.+.... ..+...|...|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6777778877 889999999998887652 1122222 5567889999999999999
Q ss_pred HHHHHHcCCCC--cHhHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcccc
Q 046446 159 FLDMEENAVAP--NVITFGTLIHGFIRI----------NEPSKVIELLHKMKEKNVMPDA----SIVSIVVDLLAKNEIS 222 (244)
Q Consensus 159 ~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 222 (244)
|+.+.+..... ....+..+..++... |++++|...++++.+.. |+. .....+-..+.+.++.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHHHHh
Confidence 99988753221 245677777788766 88899999999998763 443 3455566666667777
Q ss_pred ccchhhh
Q 046446 223 LNSLPSF 229 (244)
Q Consensus 223 ~~a~~~~ 229 (244)
+++....
T Consensus 249 ~~~~~~~ 255 (261)
T 3qky_A 249 EGDASLA 255 (261)
T ss_dssp HTCTTCC
T ss_pred hhhhHHh
Confidence 6665543
No 77
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=2.7e-11 Score=78.81 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555566666666666555542 2244455555555555566666666666555543 3344455555555555
Q ss_pred CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
.|++++|...++++.... +.+...+..+...+...|++++|...++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554432 22344455555555555555555555555443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.4e-10 Score=89.20 Aligned_cols=231 Identities=10% Similarity=-0.055 Sum_probs=163.4
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCC----hhHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVV----IHNTLFIGLFEIHQVERAFKLFDEMQRDGV-AAD----TRTYTIFID 74 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~ 74 (244)
..+...|++++|...+++........+.. .++.+...+...|++++|...+++...... .++ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34567899999999999988763222222 456666778889999999999998765311 112 233567788
Q ss_pred HHHhCCcHHHHHHHHHHHHHh----CCC--c-cHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----CccccHHHHHHHH
Q 046446 75 GLCKNGYIVESVELFRTLRIL----KCE--L-DIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VLVADVVTYSIMI 143 (244)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li 143 (244)
.+...|++++|.+.+++..+. +.+ | ....+..+...+...|++++|...+++.... +......++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 889999999999999987653 221 2 3445677888899999999999999886532 2111345678888
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCcH-hHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCC---hhhHHHHHH
Q 046446 144 HGLYNDGQMDKAHDLFLDMEENAVAPNV-ITFG-----TLIHGFIRINEPSKVIELLHKMKEKNVMPD---ASIVSIVVD 214 (244)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 214 (244)
..+...|++++|...++........++. ..+. ..+..+...|++++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8999999999999999987653212211 1122 233447789999999999988765432211 224567788
Q ss_pred HHHhccccccchhhhhhhhh
Q 046446 215 LLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+...|++++|...++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 89999999999988887654
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=3.3e-11 Score=78.44 Aligned_cols=130 Identities=16% Similarity=0.202 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56677888888899999999999888765 4567778888888888899999999998887654 345777888888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999998887753 235677778888888889999998888887764
No 80
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=1.8e-10 Score=92.85 Aligned_cols=188 Identities=11% Similarity=0.053 Sum_probs=150.2
Q ss_pred cCChh-------HHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC-h-hHHHHHHHHHHhC
Q 046446 9 NKEIE-------GALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD-T-RTYTIFIDGLCKN 79 (244)
Q Consensus 9 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~ll~~~~~~ 79 (244)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 68887 89999999987322446778999999999999999999999999985 454 2 4788899999999
Q ss_pred CcHHHHHHHHHHHHHhCCCccHHhHHHHHHH-HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHH
Q 046446 80 GYIVESVELFRTLRILKCELDIQAYSCLIDG-LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
|++++|.++|++..+.. +.+...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 99999999999998753 2333333332222 346899999999999987653 34688999999999999999999999
Q ss_pred HHHHHHcCC-CCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 159 FLDMEENAV-APN--VITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 159 ~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
|+.....+. .|+ ...|...+......|+.+.+..++.++.+.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999987642 232 447888888888899999999999998764
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.38 E-value=6.6e-11 Score=83.66 Aligned_cols=105 Identities=9% Similarity=0.118 Sum_probs=55.2
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCC-hhhHHH----------------HHHHHhhhchHHHHHHHHHHHHHcCCCCChh
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPD-VVIHNT----------------LFIGLFEIHQVERAFKLFDEMQRDGVAADTR 67 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 67 (244)
.+.+.|++++|+..|++..+. .|+ ...|.. +..++.+.|++++|+..|++..+.. +-+..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 456778888888888887775 343 333444 4444455555555555555554432 11344
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
.+..+..++...|++++|.+.|++..+.. |.+..++..+..+|..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44455555555555555555555554443 2344444444444433
No 82
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.37 E-value=4e-10 Score=79.90 Aligned_cols=178 Identities=12% Similarity=-0.016 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC----cHHHHHHH
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG----YIVESVEL 88 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 88 (244)
.+|.+.|++..+.| ++..+..+...|...+++++|..+|++..+.| ++..+..|...|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45788888888875 77788888888989999999999999998875 66788888888887 6 89999999
Q ss_pred HHHHHHhCCCccHHhHHHHHHHHHc----CCCHHHHHHHHHhcccCCcc-ccHHHHHHHHHHHHc----cCChHHHHHHH
Q 046446 89 FRTLRILKCELDIQAYSCLIDGLCK----SGRLEIALELFHSLPRGVLV-ADVVTYSIMIHGLYN----DGQMDKAHDLF 159 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 159 (244)
|++..+.| +..++..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 56778888888887 88999999999999988621 127788888888888 88999999999
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCCC
Q 046446 160 LDMEENAVAPNVITFGTLIHGFIRI-N-----EPSKVIELLHKMKEKNV 202 (244)
Q Consensus 160 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 202 (244)
+...+. ..+...+..+...|... | ++++|..+|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998876 23455677777777643 3 89999999999988874
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=2.1e-11 Score=94.21 Aligned_cols=196 Identities=10% Similarity=-0.066 Sum_probs=149.1
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC--C----CccHHhHH
Q 046446 37 LFIGLFEIHQVERAFKLFDEMQRD----GVAA-DTRTYTIFIDGLCKNGYIVESVELFRTLRILK--C----ELDIQAYS 105 (244)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 105 (244)
....+...|++++|...|++..+. +..+ ...++..+...|...|+++.|...+++..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 456677889999999999998764 1112 34678899999999999999999999887641 1 12245788
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccC----C-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCcHhHHH
Q 046446 106 CLIDGLCKSGRLEIALELFHSLPRG----V-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN----AV-APNVITFG 175 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~ 175 (244)
.+...|...|++++|...+++..+. + ......++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999887643 1 1112357888999999999999999999987762 23 33466788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhccc---cccchhhhhhh
Q 046446 176 TLIHGFIRINEPSKVIELLHKMKEK----NVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVH 232 (244)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 232 (244)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ .++|+.+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 8999999999999999999987753 111122335677888888888 67777777655
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=7.6e-11 Score=83.34 Aligned_cols=174 Identities=10% Similarity=0.022 Sum_probs=128.9
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHH----------------HHHHHHhCCcHHHHHHHHHHHHHhC
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTI----------------FIDGLCKNGYIVESVELFRTLRILK 96 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 96 (244)
.+-.....+...|++++|+..|++..+.... +...+.. +..++.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3344455677889999999999999886321 4456666 8899999999999999999999886
Q ss_pred CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCcHhHH
Q 046446 97 CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ--MDKAHDLFLDMEENAVAPNVITF 174 (244)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~ 174 (244)
|.+...+..+..++...|++++|...|++..+.. +.+..+|..+..+|...|+ .+.+...+..... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 5678899999999999999999999999998764 4467888888888866554 3445555555432 22333334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 046446 175 GTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVV 213 (244)
Q Consensus 175 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 213 (244)
.....++...|++++|...|++..+. .|+......+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 44555667789999999999998875 57765444433
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=1.2e-11 Score=102.60 Aligned_cols=173 Identities=8% Similarity=-0.054 Sum_probs=142.5
Q ss_pred hhcCChhHHHHHHHHHH--------hCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 046446 7 CKNKEIEGALNLYSEML--------SKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 78 (244)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|+..|++..+.. +-+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56799999999999998 432 4456778888899999999999999999998863 3367889999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHH
Q 046446 79 NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
.|++++|.+.|++..+.. +.+...|..+..+|...|++++ ...|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876 5678889999999999999999 99999988764 44678899999999999999999999
Q ss_pred HHHHHHcCCCCc-HhHHHHHHHHHHhcCC
Q 046446 159 FLDMEENAVAPN-VITFGTLIHGFIRINE 186 (244)
Q Consensus 159 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 186 (244)
|+...+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988764 344 5667777777766554
No 86
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=4e-10 Score=89.34 Aligned_cols=125 Identities=9% Similarity=-0.125 Sum_probs=78.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC--------CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc-----C-CCC-Chh
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK--------GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD-----G-VAA-DTR 67 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~-~~~ 67 (244)
-..+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. + ..+ ...
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 34567789999999999887542 11234567888899999999999999999887642 1 111 245
Q ss_pred HHHHHHHHHHh--CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHH---HcCCCHHHHHHHHHhcc
Q 046446 68 TYTIFIDGLCK--NGYIVESVELFRTLRILKCELDIQAYSCLIDGL---CKSGRLEIALELFHSLP 128 (244)
Q Consensus 68 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~ 128 (244)
++..+..++.. .+++++|++.|++..+.. |-+...+..+..++ ...++.++|++.+++..
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 56655555544 457889999998887664 33444444443332 23344444555544443
No 87
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.35 E-value=2.8e-10 Score=98.35 Aligned_cols=195 Identities=14% Similarity=0.171 Sum_probs=105.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE 87 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 87 (244)
..|++++|.++.++. -+..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666543 23556666666666677777777666442 255666666667777777777777
Q ss_pred HHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 046446 88 LFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAV 167 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (244)
.+...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 666555433 22222233555555555555333222 1 123334444444445555555555555442
Q ss_pred CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC------------------------CCCCChhhHHHHHHHHHhccccc
Q 046446 168 APNVITFGTLIHGFIRINEPSKVIELLHKMKEK------------------------NVMPDASIVSIVVDLLAKNEISL 223 (244)
Q Consensus 168 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~ 223 (244)
..|..+..++.+.|++++|.+.+++.... ++..+...+..++..|.+.|.++
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHH
Confidence 13444444444444444444444332110 12234556667777788888888
Q ss_pred cchhhhhhh
Q 046446 224 NSLPSFTVH 232 (244)
Q Consensus 224 ~a~~~~~~~ 232 (244)
+|+.+++..
T Consensus 1298 EAI~LlE~a 1306 (1630)
T 1xi4_A 1298 ELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHH
Confidence 888777654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=1.5e-10 Score=85.61 Aligned_cols=178 Identities=7% Similarity=0.034 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcc
Q 046446 50 AFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 50 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (244)
++..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 33444445666666666666666666666554431 1355556666666666666666666666665
Q ss_pred cCCccc-----cHHHHHHHHHHHH--c--cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 129 RGVLVA-----DVVTYSIMIHGLY--N--DGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 129 ~~~~~~-----~~~~~~~li~~~~--~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
+. .| +..+...++.++. . .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 2344444444422 2 22666666666666543 23322223333356666666666666665443
Q ss_pred C-----CC----CCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 200 K-----NV----MPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 200 ~-----~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
. +. +-+..++..+|......|+ ++.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 2 00 1244444344444444454 55555555443
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=1.1e-10 Score=85.34 Aligned_cols=160 Identities=7% Similarity=-0.049 Sum_probs=127.3
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CC-ChhHHHHHHHHHHh
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPD---VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV-AA-DTRTYTIFIDGLCK 78 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~ll~~~~~ 78 (244)
..+.+.|++++|+..|+.+.+.. +.+ ...+..+..++...|++++|+..|++..+... .| ...++..+..++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 46778999999999999999863 223 56788888999999999999999999988632 12 24567788888888
Q ss_pred --------CCcHHHHHHHHHHHHHhCCCccHHhH-----------------HHHHHHHHcCCCHHHHHHHHHhcccCCc-
Q 046446 79 --------NGYIVESVELFRTLRILKCELDIQAY-----------------SCLIDGLCKSGRLEIALELFHSLPRGVL- 132 (244)
Q Consensus 79 --------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 132 (244)
.|++++|...|+++.+.. |.+.... ..+...|...|++++|...|+++.+...
T Consensus 102 ~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999999999998864 3333333 4568889999999999999999876531
Q ss_pred -cccHHHHHHHHHHHHcc----------CChHHHHHHHHHHHHc
Q 046446 133 -VADVVTYSIMIHGLYND----------GQMDKAHDLFLDMEEN 165 (244)
Q Consensus 133 -~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~ 165 (244)
......+..+..+|... |++++|...|+.+.+.
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 11345777888888766 8899999999998875
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=8e-11 Score=90.57 Aligned_cols=231 Identities=12% Similarity=0.007 Sum_probs=164.4
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCC--C-ChhHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGI-KPD----VVIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVA--A-DTRTYTI 71 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ 71 (244)
..+...|++++|...+++...... .++ ..++..+...+...|++++|...+++..+. +.. | ...++..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 456788999999999998765310 111 223566777888999999999999988653 222 2 2345677
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHhCCC----ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccc-cHHHHH-----H
Q 046446 72 FIDGLCKNGYIVESVELFRTLRILKCE----LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA-DVVTYS-----I 141 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-----~ 141 (244)
+...+...|++++|...+++....... ....++..+...+...|++++|...+++.......+ ....+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 888999999999999999998764321 123567788889999999999999999875321011 111222 2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCh-hhHHHHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENAVAP---NVITFGTLIHGFIRINEPSKVIELLHKMKEK----NVMPDA-SIVSIVV 213 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~ 213 (244)
.+..+...|++++|...++........+ ....+..+...+...|++++|...+++.... |..++. ..+..+.
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3345778999999999998876543221 1234567778889999999999999987643 222222 3666778
Q ss_pred HHHHhccccccchhhhhhhhh
Q 046446 214 DLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.++...|+.++|...++....
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999988876654
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=4.8e-11 Score=88.91 Aligned_cols=193 Identities=9% Similarity=-0.016 Sum_probs=140.3
Q ss_pred hhhhhcCChhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC---C--ChhHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSK----GIKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA---A--DTRTYTIFI 73 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll 73 (244)
..|...|++++|...|++.... |-+++ ..+|+.+...|...|++++|+..|++..+.... + -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577789999999999887653 32222 468899999999999999999999988764111 1 145788999
Q ss_pred HHHHhC-CcHHHHHHHHHHHHHhCCC---c--cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccH------HHHHH
Q 046446 74 DGLCKN-GYIVESVELFRTLRILKCE---L--DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV------VTYSI 141 (244)
Q Consensus 74 ~~~~~~-~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 141 (244)
..|... |++++|+..|++..+.... + ...++..+...+...|++++|...|++.......... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 9999999999998764211 1 1356888999999999999999999998765322111 25778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCcH------hHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNV------ITFGTLIHGFI--RINEPSKVIELLHKMK 198 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 198 (244)
+..++...|++++|...|+...+. .|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888899999999999999987753 2331 13444555554 3456777777776543
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=3.4e-10 Score=83.80 Aligned_cols=183 Identities=8% Similarity=0.022 Sum_probs=132.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 15 ALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV-AADTRTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 15 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
|+..|++....+ .++...+..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 45666667888888899999999999998866653 2256677788899999999999999999998
Q ss_pred HhCCCc-----cHHhHHHHHHH--HHcCC--CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 94 ILKCEL-----DIQAYSCLIDG--LCKSG--RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 94 ~~~~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 45 35555555555 33334 899999999998776 45534444555588899999999999987664
Q ss_pred cC---------CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 046446 165 NA---------VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206 (244)
Q Consensus 165 ~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 206 (244)
.. -+-++.+...++......|+ .|.+++.++.+.. |+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCC
Confidence 31 13366777566666666776 7889999988864 554
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=6.8e-11 Score=98.10 Aligned_cols=173 Identities=8% Similarity=0.003 Sum_probs=144.1
Q ss_pred hhhchHHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 42 FEIHQVERAFKLFDEMQ--------RDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 42 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
...|++++|++.+++.. +. .+.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 43 23466788899999999999999999999999876 5678899999999999
Q ss_pred CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHH
Q 046446 114 SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIEL 193 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 193 (244)
.|++++|...|++..+.. +-+...|..+..++...|++++ .+.|+...+... .+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988764 3467889999999999999999 999999887643 3677899999999999999999999
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHHHhccc
Q 046446 194 LHKMKEKNVMPD-ASIVSIVVDLLAKNEI 221 (244)
Q Consensus 194 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 221 (244)
|++..+. .|+ ...+..+..++...+.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988765 354 4566677777766555
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=4.5e-11 Score=80.00 Aligned_cols=142 Identities=9% Similarity=-0.142 Sum_probs=74.8
Q ss_pred HHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHH
Q 046446 40 GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119 (244)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 119 (244)
.+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3444556666666665554321 1123344455666666666666666666666554 3455566666666666666666
Q ss_pred HHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHH-HHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 046446 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDL-FLDMEENAVAPNVITFGTLIHGFIRIN 185 (244)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g 185 (244)
|...|++..+.. +-+..+|..+...|.+.|++++|.+. ++...+... -++.+|......+...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 666666655542 22455566666666666666554433 344444321 13444444444444444
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.30 E-value=2e-10 Score=93.46 Aligned_cols=154 Identities=8% Similarity=-0.085 Sum_probs=119.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHH
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
.|++++|.+.|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 578999999999988763 3457788999999999999999999999998863 33678899999999999999999999
Q ss_pred HHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHcc---CChHHHHHHHHHHHHc
Q 046446 89 FRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYND---GQMDKAHDLFLDMEEN 165 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 165 (244)
+++..+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999876 5678899999999999999999999999988764 34678899999999999 9999999999998876
Q ss_pred C
Q 046446 166 A 166 (244)
Q Consensus 166 ~ 166 (244)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.30 E-value=1.4e-09 Score=77.74 Aligned_cols=63 Identities=8% Similarity=-0.060 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-A-DTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
.+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3334444555566666666666666554211 1 1234555556666666666666666665554
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=3e-11 Score=80.85 Aligned_cols=143 Identities=10% Similarity=0.001 Sum_probs=115.8
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
..+...|++++|+..++..... .| +...+..+...|.+.|++++|+..|++..+... -+..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCch
Confidence 4566789999999999988775 34 345677888999999999999999999998743 3788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHH-HHhcccCCccccHHHHHHHHHHHHccCC
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL-FHSLPRGVLVADVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (244)
++|+..|++..+.. |-+..+|..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999999876 56788999999999999998876654 57776653 3457777777777776664
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.30 E-value=5.4e-10 Score=82.99 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=133.6
Q ss_pred CCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHH-
Q 046446 63 AADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSI- 141 (244)
Q Consensus 63 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 141 (244)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++.... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4456677788888999999999999999998876 567888999999999999999999999998876 355443333
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcc
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNE 220 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 220 (244)
....+...++.++|.+.++...+.. +.+...+..+...+...|++++|...+.++.+..... +...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667788888999998888764 3367788889999999999999999999998864321 2567889999999999
Q ss_pred ccccchhhhhhh
Q 046446 221 ISLNSLPSFTVH 232 (244)
Q Consensus 221 ~~~~a~~~~~~~ 232 (244)
+.+++...|...
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 999998887654
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.29 E-value=2.1e-10 Score=78.77 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=93.4
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH-HH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG-LY 147 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 147 (244)
+......+.+.|++++|...|++..+.. |.+...+..+..++...|++++|...+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4445556666677777777776665543 3456666666777777777777777777665542 233322222111 11
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhccccccch
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP-DASIVSIVVDLLAKNEISLNSL 226 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 226 (244)
..++..+|...++...+... -+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223345666666665421 245666666777777777777777777776654322 2446666777777777777777
Q ss_pred hhhhhh
Q 046446 227 PSFTVH 232 (244)
Q Consensus 227 ~~~~~~ 232 (244)
..|+..
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.28 E-value=3e-10 Score=85.23 Aligned_cols=215 Identities=10% Similarity=-0.002 Sum_probs=151.5
Q ss_pred hcCChhHHHHHHHHHHhC------CCCCC----hhhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCCC-ChhHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSK------GIKPD----VVIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVAA-DTRTYTIF 72 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~------~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l 72 (244)
..|++++|.+++++..+. +..++ ...|+.....|...|++++|...|.+..+. +-.+ -..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357888999998877652 11233 235677778888899999999999987654 1111 14578889
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHhCC---Cc--cHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----Ccc-ccHHHHHHH
Q 046446 73 IDGLCKNGYIVESVELFRTLRILKC---EL--DIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VLV-ADVVTYSIM 142 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 142 (244)
...|...|++++|+..|++..+... .+ ...++..+...|.. |++++|...|++.... +.. ....+++.+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999998765311 12 24578888889988 9999999999887643 111 114678889
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh------hhHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEEN----AVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA------SIVSI 211 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ 211 (244)
...|...|++++|...|+...+. +..+. ...+..+..++...|++++|...|++.. . .|+. .....
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~ 238 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALED 238 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHH
Confidence 99999999999999999987753 11111 2356666777788899999999999988 4 2321 23445
Q ss_pred HHHHHHhccccccchh
Q 046446 212 VVDLLAKNEISLNSLP 227 (244)
Q Consensus 212 l~~~~~~~g~~~~a~~ 227 (244)
++.++ ..|+.+....
T Consensus 239 l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 239 LLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHH-HTTCHHHHHH
T ss_pred HHHHH-HhcCHHHHHH
Confidence 55555 4555544433
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=3.3e-10 Score=84.13 Aligned_cols=167 Identities=8% Similarity=0.030 Sum_probs=135.3
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhH-HH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAY-SC 106 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 106 (244)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4456677788888899999999999999998873 3367889999999999999999999999987764 444333 33
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcC
Q 046446 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP-NVITFGTLIHGFIRIN 185 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 185 (244)
....+...++.++|...+++..... +.+...+..+...+...|++++|...|..+.+..... +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667778888999998887764 5578899999999999999999999999998764321 2678899999999999
Q ss_pred ChhHHHHHHHHHH
Q 046446 186 EPSKVIELLHKMK 198 (244)
Q Consensus 186 ~~~~a~~~~~~~~ 198 (244)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999888754
No 102
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=6.6e-10 Score=85.73 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=146.4
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC----CC-CC-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCCC-ChhHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK----GI-KP-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVAA-DTRTYTI 71 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ 71 (244)
-..|...|+++.|...+++..+. +- .+ ...+++.+...|...|++++|...|++..+. +.++ ...++..
T Consensus 148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 227 (378)
T 3q15_A 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678899999999999987653 11 11 2457788889999999999999999988663 1111 2357888
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHh----CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----CccccHHHHHHHH
Q 046446 72 FIDGLCKNGYIVESVELFRTLRIL----KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VLVADVVTYSIMI 143 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li 143 (244)
+..+|...|++++|.+.+++..+. +.+....++..+...|.+.|++++|...+++..+. +-+.....+..+.
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 307 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999998761 32444778899999999999999999999986542 2222344567777
Q ss_pred HHHHccCC---hHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 144 HGLYNDGQ---MDKAHDLFLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 144 ~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
..+...++ +.+|...++. .+..|+ ...+..+...|...|++++|...|++..+
T Consensus 308 ~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 308 AVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888888 6777776665 222233 34566788899999999999999998764
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=2.9e-10 Score=92.43 Aligned_cols=154 Identities=12% Similarity=0.004 Sum_probs=119.2
Q ss_pred hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHH
Q 046446 44 IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 123 (244)
.|++++|+..+++..+.. +-+...+..+...+...|++++|.+.+++..+.. +.+..++..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 3367889999999999999999999999999875 56788999999999999999999999
Q ss_pred HHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 046446 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI---NEPSKVIELLHKMKEK 200 (244)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 200 (244)
+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988764 44678999999999999999999999999887642 3577888899999999 9999999999998876
Q ss_pred C
Q 046446 201 N 201 (244)
Q Consensus 201 ~ 201 (244)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 104
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.24 E-value=3e-09 Score=92.09 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=131.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
-.++...|++++|++.|.+. -|...|..++.++.+.|++++|.++|...++.. +++...+.++.+|++.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 45677889999999988553 367788888999999999999999998776653 3433344577778887777
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
++...+. + .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.++..
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 7533332 1 345556666777777777777777777764 35666777777777777776666544
Q ss_pred HHc------------------------CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046446 163 EEN------------------------AVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK 218 (244)
Q Consensus 163 ~~~------------------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (244)
... ++..+...+..++..|.+.|.+++|+.+++...... +-....|.-+...|++
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 211 122355567788888999999999999998776543 3344566666666665
Q ss_pred c
Q 046446 219 N 219 (244)
Q Consensus 219 ~ 219 (244)
.
T Consensus 1327 y 1327 (1630)
T 1xi4_A 1327 F 1327 (1630)
T ss_pred C
Confidence 3
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=1.7e-10 Score=79.30 Aligned_cols=162 Identities=9% Similarity=0.015 Sum_probs=110.0
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH-H
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG-L 111 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~ 111 (244)
.+......+...|++++|...|++..+.. +-+...+..+...+...|++++|...+++..+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 44555666777888888888888776652 2356777788888888888888888888876553 244333322211 1
Q ss_pred HcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHH
Q 046446 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP-NVITFGTLIHGFIRINEPSKV 190 (244)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 190 (244)
...+...+|...+++..+.. +.+...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222234677777766553 3357788888888888888888888888887654322 345777888888888888888
Q ss_pred HHHHHHHH
Q 046446 191 IELLHKMK 198 (244)
Q Consensus 191 ~~~~~~~~ 198 (244)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=1.9e-09 Score=76.39 Aligned_cols=177 Identities=12% Similarity=0.014 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC----CHHHHHHH
Q 046446 48 ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG----RLEIALEL 123 (244)
Q Consensus 48 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 123 (244)
.+|...|++..+.| ++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677888887764 77888899999999999999999999998865 56777788888887 6 89999999
Q ss_pred HHhcccCCccccHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHh----cCChhHHHHHH
Q 046446 124 FHSLPRGVLVADVVTYSIMIHGLYN----DGQMDKAHDLFLDMEENAVA-PNVITFGTLIHGFIR----INEPSKVIELL 194 (244)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~ 194 (244)
|++..+.| +...+..|...|.. .+++++|.++|+...+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 67788888888887 88999999999998886532 126778888888888 78999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc-c-----ccccchhhhhhhhhhh
Q 046446 195 HKMKEKNVMPDASIVSIVVDLLAKN-E-----ISLNSLPSFTVHERQE 236 (244)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 236 (244)
++..+. ..+...+..|...|... | +.++|+..|+...+.+
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999887 23455677788888764 3 7899999998876654
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=1.1e-09 Score=78.32 Aligned_cols=178 Identities=6% Similarity=-0.079 Sum_probs=118.0
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPD----VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT--RTYTIFIDGL 76 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~ 76 (244)
...+.+.|++++|+..|+++... .|+ ...+..+..++.+.|++++|+..|+++.+....... ..+..+..++
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 35678899999999999999886 232 356778889999999999999999999886332111 2455555555
Q ss_pred Hh------------------CCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHH
Q 046446 77 CK------------------NGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVT 138 (244)
Q Consensus 77 ~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (244)
.. .|++++|...|+++.+.. |-+..++.+...... +... ....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~--------~~~~ 149 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDR--------LAKY 149 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHH--------HHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHH--------HHHH
Confidence 43 456677777777766543 222222221111000 0000 0011
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAP--NVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
...+...|.+.|++++|...|+.+.+..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2345677888999999999999988753221 12467778889999999999999999888764
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=8e-09 Score=76.95 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=176.3
Q ss_pred hhhhcCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhc--hHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----H
Q 046446 5 GYCKNKEI-EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH--QVERAFKLFDEMQRDGVAADTRTYTIFIDGL----C 77 (244)
Q Consensus 5 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~ 77 (244)
+..+.|.+ ++|+++++.++... +-+...|+.--..+...+ ++++++++++.+...... +..+|+.-...+ .
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 33445555 58999999998873 234456787777777888 999999999999987433 566676554444 4
Q ss_pred hC---CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHH--HHHHHHHhcccCCccccHHHHHHHHHHHHccCC-
Q 046446 78 KN---GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ- 151 (244)
Q Consensus 78 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 151 (244)
.. +++++++++++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+.+ +-|...|+.-...+.+.++
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 45 78999999999999887 678999998888888889888 9999999998876 4578889887777777776
Q ss_pred -----hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHhccccc
Q 046446 152 -----MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK-VIELLHKMKEKN--VMPDASIVSIVVDLLAKNEISL 223 (244)
Q Consensus 152 -----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 223 (244)
++++++.++.+...... |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+.+.|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88999999998876543 88889988888888887544 555666665433 1346788899999999999999
Q ss_pred cchhhhhhhhh
Q 046446 224 NSLPSFTVHER 234 (244)
Q Consensus 224 ~a~~~~~~~~~ 234 (244)
+|+++++.+..
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 109
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.21 E-value=9.1e-09 Score=81.35 Aligned_cols=185 Identities=12% Similarity=0.030 Sum_probs=102.0
Q ss_pred hHHHHHHHHhhhc---hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC----CcHHHHHHHHHHHHHhCCCccHHhHH
Q 046446 33 IHNTLFIGLFEIH---QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN----GYIVESVELFRTLRILKCELDIQAYS 105 (244)
Q Consensus 33 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (244)
.+..+...|...| +.++|+..|++..+.|. ++...+..+...|... +++++|.+.|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5556666666666 66677777766666543 2444445555555443 56666766666655 2 3344444
Q ss_pred HHHHH-H--HcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC-----ChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 046446 106 CLIDG-L--CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG-----QMDKAHDLFLDMEENAVAPNVITFGTL 177 (244)
Q Consensus 106 ~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l 177 (244)
.+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|.+.|+... . -+...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 45444 3 34566667777776666554 4555555555555 33 6666666666555 2 244555555
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----ccccccchhhhhhhh
Q 046446 178 IHGFIR----INEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAK----NEISLNSLPSFTVHE 233 (244)
Q Consensus 178 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 233 (244)
...|.. ..++++|..+|++..+.|. ......|...|.. ..+..+|...|+...
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 555544 2366666666666666542 2333444444443 224455555555443
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.21 E-value=2.8e-09 Score=75.24 Aligned_cols=127 Identities=8% Similarity=-0.105 Sum_probs=91.8
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
+..+...+...|++++|+..|++. +.|+..++..+...+...|++++|.+.+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 445556666778888888877765 35577777788888888888888888888777765 4566777777888888
Q ss_pred CCCHHHHHHHHHhcccCCc--------------cc-cHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 114 SGRLEIALELFHSLPRGVL--------------VA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~--------------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
.|++++|...|++..+... .| ....+..+..++...|++++|.+.|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888877665321 11 2367777778888888888888888887764
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=7.3e-09 Score=73.07 Aligned_cols=144 Identities=10% Similarity=-0.077 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
.+..+...+...|++++|.+.|++.. .|+..++..+..+|...|++++|...|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45567778889999999999999873 5688899999999999999999999999988764 456789999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCC--------------C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 046446 148 NDGQMDKAHDLFLDMEENAVA--------------P-NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIV 212 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (244)
..|++++|.+.|+...+.... | ....+..+..++...|++++|...+++..+.........+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 999999999999998874321 1 2267888889999999999999999999886533333334444
Q ss_pred HHHH
Q 046446 213 VDLL 216 (244)
Q Consensus 213 ~~~~ 216 (244)
+..+
T Consensus 163 ~~~~ 166 (213)
T 1hh8_A 163 MECV 166 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.15 E-value=2.9e-09 Score=79.23 Aligned_cols=170 Identities=9% Similarity=0.003 Sum_probs=118.6
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCCh----hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC-cc---
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV-AADT----RTYTIFIDGLCKNGYIVESVELFRTLRILKCE-LD--- 100 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--- 100 (244)
....+...+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..+++..+.... ++
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 355666666777788888888888888776422 2221 13345667777778888888888888774222 22
Q ss_pred -HHhHHHHHHHHHcCCCHHHHHHHHHhccc------CCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC
Q 046446 101 -IQAYSCLIDGLCKSGRLEIALELFHSLPR------GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN----AVAP 169 (244)
Q Consensus 101 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p 169 (244)
..+++.+...|...|++++|...|++..+ ...+....++..+...|.+.|++++|...++...+. +..+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 23688888888888998888888887762 111222447788888889999999999888876542 2222
Q ss_pred c-HhHHHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 046446 170 N-VITFGTLIHGFIRINE-PSKVIELLHKMKE 199 (244)
Q Consensus 170 ~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 199 (244)
. ..+|..+..++.+.|+ +++|.+.+++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 5677888888888884 5888888887664
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=1.2e-08 Score=75.84 Aligned_cols=209 Identities=14% Similarity=-0.003 Sum_probs=146.0
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 18 LYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT---YTIFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
.+.....-...|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|.+.+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444444457888888887776653311 1222212222333 33446778899999999999999887
Q ss_pred hCC-CccH----HhHHHHHHHHHcCCCHHHHHHHHHhcccCCc-ccc----HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 95 LKC-ELDI----QAYSCLIDGLCKSGRLEIALELFHSLPRGVL-VAD----VVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 95 ~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
... .|+. ..+..+...+...|++++|...+++...... .++ ..+++.+...|...|++++|...++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 2332 2344677888888999999999998875321 122 34689999999999999999999999873
Q ss_pred ----c-CCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhccc-cccchhhhhhh
Q 046446 165 ----N-AVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEK----NVMPD-ASIVSIVVDLLAKNEI-SLNSLPSFTVH 232 (244)
Q Consensus 165 ----~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 232 (244)
. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..++..+..+|.+.|+ .++|+..++..
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1 22222 347888999999999999999999987643 22222 6788899999999995 58898888776
Q ss_pred hhh
Q 046446 233 ERQ 235 (244)
Q Consensus 233 ~~~ 235 (244)
..-
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 114
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.11 E-value=8.6e-09 Score=81.47 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=121.5
Q ss_pred ChhHHHHHHHHHHhCC---cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC----CCHHHHHHHHHhcccCCccccHH
Q 046446 65 DTRTYTIFIDGLCKNG---YIVESVELFRTLRILKCELDIQAYSCLIDGLCKS----GRLEIALELFHSLPRGVLVADVV 137 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 137 (244)
++..+..|...|...| +.++|++.|++..+.| +++...+..+...|... +++++|...|++.. . -+..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 4447888888888889 8999999999998887 46666666777777655 68999999999887 3 3566
Q ss_pred HHHHHHHH-H--HccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCChhhH
Q 046446 138 TYSIMIHG-L--YNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRIN-----EPSKVIELLHKMKEKNVMPDASIV 209 (244)
Q Consensus 138 ~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~ 209 (244)
.+..+... + ...+++++|.+.|+...+.| +...+..+...|. .| ++++|..+|++.. .| +....
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHH
Confidence 67777666 4 56889999999999988765 6667777777776 55 8999999998877 33 56677
Q ss_pred HHHHHHHHh----ccccccchhhhhhhhhhh
Q 046446 210 SIVVDLLAK----NEISLNSLPSFTVHERQE 236 (244)
Q Consensus 210 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 236 (244)
..|...|.. ..+.++|...|+...+.+
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 777777776 237788888888766543
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.10 E-value=9.9e-09 Score=69.22 Aligned_cols=127 Identities=7% Similarity=-0.092 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555556666666655555543 3345555555555555666666666555554432 224455555555666
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHH--HHHHHHhcCChhHHHHHHHHH
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGT--LIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 197 (244)
..|++++|...++...+... .+...+.. ....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666665554321 12223322 222244555666666555543
No 116
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.09 E-value=5e-09 Score=73.22 Aligned_cols=156 Identities=12% Similarity=-0.047 Sum_probs=82.7
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhCCc
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRD----GVA-ADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~ 81 (244)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567777777755444332 1224456666666777777777777777766552 111 123455666666667777
Q ss_pred HHHHHHHHHHHHHh----CCC--ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----Ccc-ccHHHHHHHHHHHHccC
Q 046446 82 IVESVELFRTLRIL----KCE--LDIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VLV-ADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 82 ~~~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~ 150 (244)
+++|.+.+++..+. +-. ....++..+...+...|++++|...+++.... +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777766665443 101 11334555566666666666666666654321 100 11223455555556666
Q ss_pred ChHHHHHHHHHHH
Q 046446 151 QMDKAHDLFLDME 163 (244)
Q Consensus 151 ~~~~a~~~~~~~~ 163 (244)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555543
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.09 E-value=9.5e-09 Score=69.32 Aligned_cols=130 Identities=11% Similarity=-0.008 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456777788889999999999999988863 3367888899999999999999999999998875 5678889999999
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHH--HHHHHHHHccCChHHHHHHHHHHH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTY--SIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
+...|++++|...|++..... +.+...+ ...+..+...|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999987653 2344455 334444778899999999887654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=3e-09 Score=79.74 Aligned_cols=190 Identities=9% Similarity=-0.016 Sum_probs=139.9
Q ss_pred hhchHHHHHHHHHHHHHc------CCCCCh----hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC---C--ccHHhHHHH
Q 046446 43 EIHQVERAFKLFDEMQRD------GVAADT----RTYTIFIDGLCKNGYIVESVELFRTLRILKC---E--LDIQAYSCL 107 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~------~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l 107 (244)
..|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+... . .-..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357888888888877653 112332 3577778889999999999999998765321 1 124578889
Q ss_pred HHHHHcCCCHHHHHHHHHhccc----CCccc-cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---C--cHhHHHHH
Q 046446 108 IDGLCKSGRLEIALELFHSLPR----GVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVA---P--NVITFGTL 177 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p--~~~~~~~l 177 (244)
...|...|++++|...|++..+ .|-.. ...+++.+...|.. |++++|...|++..+.... + ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999987643 22111 24678888899988 9999999999987643111 1 14678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhccccccchhhhhhhh
Q 046446 178 IHGFIRINEPSKVIELLHKMKEK----NVMPD-ASIVSIVVDLLAKNEISLNSLPSFTVHE 233 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (244)
...+.+.|++++|...|++.... +..+. ...+..+..++...|++++|+..|+...
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999998763 21111 2356667778888899999999998775
No 119
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.07 E-value=3.9e-09 Score=73.76 Aligned_cols=158 Identities=11% Similarity=-0.060 Sum_probs=114.7
Q ss_pred hhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh----CC-CccHHhHHHHHHHHHcCCC
Q 046446 42 FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL----KC-ELDIQAYSCLIDGLCKSGR 116 (244)
Q Consensus 42 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~ 116 (244)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966555432 2235678889999999999999999999988762 11 2345678888899999999
Q ss_pred HHHHHHHHHhcccC----Ccc--ccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCCc--HhHHHHHHHHHHhcC
Q 046446 117 LEIALELFHSLPRG----VLV--ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA---VAPN--VITFGTLIHGFIRIN 185 (244)
Q Consensus 117 ~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g 185 (244)
+++|...+++.... +-. .....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999876543 211 224567888889999999999999998876321 1111 234577788888999
Q ss_pred ChhHHHHHHHHHHHC
Q 046446 186 EPSKVIELLHKMKEK 200 (244)
Q Consensus 186 ~~~~a~~~~~~~~~~ 200 (244)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887643
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=1.3e-08 Score=64.96 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2233344444444444444444444444443321 223334444444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 046446 148 NDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~ 164 (244)
..|++++|...++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.06 E-value=1.2e-08 Score=65.06 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888888999999999999999998863 3467788899999999999999999999998875 5678888999999
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999987653 3345555555555443
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.06 E-value=4.7e-08 Score=72.67 Aligned_cols=164 Identities=13% Similarity=0.001 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc-----HHhHHHHHHHHHcCCCHHHHHHHHHhcccCC---cccc--HH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELD-----IQAYSCLIDGLCKSGRLEIALELFHSLPRGV---LVAD--VV 137 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~ 137 (244)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344445555555666666666555544321110 1122334444555556666666555543211 0111 33
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH---HcC-CCC--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-Ch
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDME---ENA-VAP--NVITFGTLIHGFIRINEPSKVIELLHKMKEK----NVMP-DA 206 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~---~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 206 (244)
+++.+...|...|++++|...++... +.. ..+ ...++..+...|...|++++|...+++..+. +..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55555566666666666666665544 111 011 1135555555566666666666665554432 1111 13
Q ss_pred hhHHHHHHHHHhccccccc-hhhhhh
Q 046446 207 SIVSIVVDLLAKNEISLNS-LPSFTV 231 (244)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a-~~~~~~ 231 (244)
.+|..+..+|.+.|+.++| ...++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4455555566666666555 444443
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=1.3e-08 Score=65.76 Aligned_cols=94 Identities=15% Similarity=-0.013 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
+......|.+.|++++|++.|++..+.. +.+..+|..+..+|...|++++|+..+++..+.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444433 2334444444444444444444444444443332 2233444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 046446 149 DGQMDKAHDLFLDMEE 164 (244)
Q Consensus 149 ~~~~~~a~~~~~~~~~ 164 (244)
.|++++|.+.|+...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.05 E-value=2.4e-09 Score=73.44 Aligned_cols=122 Identities=9% Similarity=0.077 Sum_probs=74.3
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhCCcH--
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG-LCKNGYI-- 82 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~-- 82 (244)
+...|++++|...++...+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 445667777777777666542 3355566666667777777777777777766542 2245556666666 5566666
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
++|...+++..+.. +.+...+..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777666654 344566666666677777777777777666554
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=2e-08 Score=74.72 Aligned_cols=169 Identities=9% Similarity=-0.019 Sum_probs=124.9
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC---Ccc-
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD-----TRTYTIFIDGLCKNGYIVESVELFRTLRILKC---ELD- 100 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~- 100 (244)
....+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|+..+++..+... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 456777778888899999999999988877532211 12344566778888999999999998875321 111
Q ss_pred -HHhHHHHHHHHHcCCCHHHHHHHHHhccc---C-Cccc--cHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC
Q 046446 101 -IQAYSCLIDGLCKSGRLEIALELFHSLPR---G-VLVA--DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA----VAP 169 (244)
Q Consensus 101 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p 169 (244)
..+++.+...|...|++++|...|++..+ . +..+ ...+++.+...|...|++++|...++...+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 45788999999999999999999988762 1 1111 22588899999999999999999998876431 111
Q ss_pred -cHhHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 046446 170 -NVITFGTLIHGFIRINEPSKV-IELLHKMK 198 (244)
Q Consensus 170 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 198 (244)
-..+|..+..++...|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156788888999999999999 77777755
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.3e-08 Score=65.69 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=92.7
Q ss_pred CCCC-hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHH
Q 046446 27 IKPD-VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105 (244)
Q Consensus 27 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (244)
+.|+ ...+......+.+.|++++|+..|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3454 3467788888999999999999999998873 3478889999999999999999999999999876 56788899
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHH
Q 046446 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
.+..++...|++++|...|++..+.. |-+...+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 99999999999999999999988763 2344444444
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.03 E-value=9e-09 Score=66.30 Aligned_cols=116 Identities=13% Similarity=-0.036 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..... +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 33344444444444444444444444332 2234444444444444444444444444443321 223444444444555
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 186 (244)
..|++++|...++...+... .+...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 55555555555554444321 133344444444444443
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.03 E-value=2e-08 Score=64.63 Aligned_cols=118 Identities=10% Similarity=-0.032 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
...+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555555666666666666655542 2244555555566666666666666666655543 3345555555566
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (244)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666555432 2234455555555544443
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-08 Score=65.56 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 3333333334444444444444333322 1233333333333334444444444433333221 1123333333334444
Q ss_pred cCChHHHHHHHHHH
Q 046446 149 DGQMDKAHDLFLDM 162 (244)
Q Consensus 149 ~~~~~~a~~~~~~~ 162 (244)
.|++++|.+.|+..
T Consensus 97 ~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 97 MKDYTKAMDVYQKA 110 (133)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 44444444444333
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-08 Score=65.72 Aligned_cols=120 Identities=10% Similarity=-0.027 Sum_probs=96.2
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (244)
+.+...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456678888888999999999999999988763 3367888889999999999999999999988875 4577888899
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
..++...|++++|...|++..+.. +.+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999887653 234556666666665544
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=1.5e-08 Score=67.55 Aligned_cols=97 Identities=14% Similarity=0.010 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHH
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (244)
..+..+...+.+.|++++|...|++..+.. |.+...|..+..+|...|++++|...|++..... +.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 345555566666666666666666666554 3455666666666666666666666666655543 23455566666666
Q ss_pred HccCChHHHHHHHHHHHHc
Q 046446 147 YNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~ 165 (244)
...|++++|...|+...+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.01 E-value=4.1e-09 Score=72.22 Aligned_cols=121 Identities=7% Similarity=0.115 Sum_probs=77.2
Q ss_pred hhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH-HHcCCCH--H
Q 046446 42 FEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG-LCKSGRL--E 118 (244)
Q Consensus 42 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~ 118 (244)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566777777777766652 2355667777777777777777777777776654 3455666666666 6666776 7
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
+|...+++..+.. +.+...+..+...+...|++++|...|+...+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777766543 234566666777777777777777777776654
No 133
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.00 E-value=6.8e-08 Score=79.64 Aligned_cols=220 Identities=12% Similarity=-0.063 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHH
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAF-KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 91 (244)
+++..+|++.... ++-+...|-..+..+...|+.++|. .+|++.... .+.+...|-..+...-+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456677777665 2446677777777777788888886 899888765 444566677778888888999999999988
Q ss_pred HHHhCC---------Cc------------cHHhHHHHHHHHHcCCCHHHHHHHHHhcccC-CccccHHHHHHHHHHHHcc
Q 046446 92 LRILKC---------EL------------DIQAYSCLIDGLCKSGRLEIALELFHSLPRG-VLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 92 ~~~~~~---------~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 149 (244)
+.+... .| ...+|...+....+.|..+.|..+|.+..+. + ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 876310 13 2346788888888888899999999988765 2 12233443333332333
Q ss_pred -CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhccccccch
Q 046446 150 -GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMP--DASIVSIVVDLLAKNEISLNSL 226 (244)
Q Consensus 150 -~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 226 (244)
++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|++.......+ ....|...++.-.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4589999999887765 33356666777777778899999999999888764322 3456777777777888888888
Q ss_pred hhhhhhhhhh
Q 046446 227 PSFTVHERQE 236 (244)
Q Consensus 227 ~~~~~~~~~~ 236 (244)
.+.+.+.+..
T Consensus 562 ~v~~R~~~~~ 571 (679)
T 4e6h_A 562 TLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 8888776543
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=4e-08 Score=65.53 Aligned_cols=103 Identities=10% Similarity=-0.076 Sum_probs=90.6
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
+...+..+...+.+.|++++|+..|++..... +-+...|..+..++...|++++|+..|++..+.. |.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34567788888999999999999999999874 3378899999999999999999999999999886 567889999999
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccH
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADV 136 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (244)
+|...|++++|...|++..+.. |+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 9999999999999999988763 554
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.98 E-value=2.4e-08 Score=75.81 Aligned_cols=123 Identities=8% Similarity=-0.104 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC--------------hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD--------------TRTYTIFIDGLCKNGYIVESVELFRTLRILK 96 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 96 (244)
...+..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33455555555556666666666665555421111 2444555555555555555555555554443
Q ss_pred CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 97 CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
+.+..+|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.+++
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344445555555555555555555555444432 22344444444444444444444
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=5.5e-08 Score=71.11 Aligned_cols=191 Identities=10% Similarity=0.007 Sum_probs=139.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHH-------HHHHhhhchHHHHHHHHHHHHHcCCCCC---------------
Q 046446 8 KNKEIEGALNLYSEMLSKGIKPDVVIHNTL-------FIGLFEIHQVERAFKLFDEMQRDGVAAD--------------- 65 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------- 65 (244)
+.++...|.+.|.+..... +-....|..+ ...+...++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999873 3356677777 4556666666666555554443 2222
Q ss_pred -------hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc--H
Q 046446 66 -------TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD--V 136 (244)
Q Consensus 66 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 136 (244)
....-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345677888999999999999887654 443366666778999999999999999776542 121 3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 046446 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN--VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206 (244)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 206 (244)
..+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++.... |+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~ 241 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEP 241 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH
Confidence 4678888999999999999999999875433243 3456677778889999999999999999864 553
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=3.1e-09 Score=78.63 Aligned_cols=98 Identities=11% Similarity=-0.097 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666667777777777777766652 2256666677777777777777777777766654 345666667777
Q ss_pred HHHcCCCHHHHHHHHHhccc
Q 046446 110 GLCKSGRLEIALELFHSLPR 129 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~ 129 (244)
+|...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766554
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=1.9e-07 Score=70.52 Aligned_cols=221 Identities=12% Similarity=0.058 Sum_probs=163.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhc-hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC-C-cHHHH
Q 046446 9 NKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN-G-YIVES 85 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a 85 (244)
.+..++|+++++.++... +-+..+|+.--..+...| .+++++.+++.+...... +..+|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 344568999999998873 334556777767777777 599999999999987443 777888777776665 6 88999
Q ss_pred HHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHH--------HHHHHHHhcccCCccccHHHHHHHHHHHHccCC------
Q 046446 86 VELFRTLRILKCELDIQAYSCLIDGLCKSGRLE--------IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ------ 151 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------ 151 (244)
+++++.+.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 99999999876 568888887766666666665 8999999988775 4588899998888888776
Q ss_pred -hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC-----CCCC
Q 046446 152 -MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP--------------------SKVIELLHKMKEKN-----VMPD 205 (244)
Q Consensus 152 -~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~ 205 (244)
++++++.++....... -|...|+.+-..+.+.|+. ....+...++...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 6888899988887643 3778888877777666654 23333333333221 1357
Q ss_pred hhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 206 ASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 206 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
......+++.|...|+.++|.+.++.+..
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 78889999999999999999999998853
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=7.7e-09 Score=68.85 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLC 112 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 112 (244)
.+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34444444455555555555555544432 1244444445555555555555555555554443 233444444445555
Q ss_pred cCCCHHHHHHHHHhcc
Q 046446 113 KSGRLEIALELFHSLP 128 (244)
Q Consensus 113 ~~~~~~~a~~~~~~~~ 128 (244)
..|++++|...|+...
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554443
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.93 E-value=4.4e-08 Score=74.36 Aligned_cols=150 Identities=11% Similarity=-0.037 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc---------------HHhHHHHHH
Q 046446 45 HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD---------------IQAYSCLID 109 (244)
Q Consensus 45 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~ 109 (244)
+++++|...|+...+.. +-+...+..+...+.+.|++++|...|++..+... .+ ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh-ccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44455555554433321 11456788888999999999999999999988752 23 478888999
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSK 189 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 189 (244)
+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|+...+... .+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888764 44688888999999999999999999999887532 356778888888888888887
Q ss_pred H-HHHHHHHH
Q 046446 190 V-IELLHKMK 198 (244)
Q Consensus 190 a-~~~~~~~~ 198 (244)
+ ...++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7 44555554
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=1.6e-07 Score=59.17 Aligned_cols=97 Identities=14% Similarity=-0.007 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL 111 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 111 (244)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344445555555566666666666555542 2244555555555555566666666665555543 23445555555555
Q ss_pred HcCCCHHHHHHHHHhcccC
Q 046446 112 CKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (244)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555444
No 142
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.91 E-value=1.4e-07 Score=77.83 Aligned_cols=208 Identities=11% Similarity=0.003 Sum_probs=155.8
Q ss_pred hhhhcCChhHHH-HHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC---------CCCC---------
Q 046446 5 GYCKNKEIEGAL-NLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG---------VAAD--------- 65 (244)
Q Consensus 5 ~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~--------- 65 (244)
.+.+.|+.+.|. .+|++.... .+.+...|-..+...-+.|+++.|.++|+++.... ..|+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 345678888997 999999875 34566667778888888999999999999988641 0132
Q ss_pred ---hhHHHHHHHHHHhCCcHHHHHHHHHHHHHh-CCCccHHhHHHHHHHHHcC-CCHHHHHHHHHhcccCCccccHHHHH
Q 046446 66 ---TRTYTIFIDGLCKNGYIVESVELFRTLRIL-KCELDIQAYSCLIDGLCKS-GRLEIALELFHSLPRGVLVADVVTYS 140 (244)
Q Consensus 66 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (244)
..+|...+....+.|..+.|.++|.+..+. + ......|...+..-.+. ++.+.|.++|+...+. .+.+...|.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHH
Confidence 236777888888889999999999999876 3 22334444333333344 4589999999998876 344677778
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 046446 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAP--NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLA 217 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (244)
..+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+..+.+++.+.- |+......+++-|.
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHhc
Confidence 88888888999999999999988754321 34678888888888999999999999999863 55556666666553
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.91 E-value=1.5e-08 Score=67.49 Aligned_cols=99 Identities=12% Similarity=0.093 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34456666677777777777777777777665 4566777777777777777777777777766543 335666777777
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 046446 145 GLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~ 165 (244)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776653
No 144
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=9e-07 Score=65.95 Aligned_cols=190 Identities=9% Similarity=0.011 Sum_probs=149.8
Q ss_pred hhcC--ChhHHHHHHHHHHhCCCCCChhhHHHHHHHH----hhh---chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 046446 7 CKNK--EIEGALNLYSEMLSKGIKPDVVIHNTLFIGL----FEI---HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 7 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 77 (244)
...| +++++++.++.+.... +-+..+|+.--..+ ... +++++++.+++.+.+... -+..+|+.-.-.+.
T Consensus 78 ~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~ 155 (306)
T 3dra_A 78 KNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVD 155 (306)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3445 8999999999998863 33445566544444 444 789999999999998743 38888888888888
Q ss_pred hCCcHH--HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC------HHHHHHHHHhcccCCccccHHHHHHHHHHHHcc
Q 046446 78 KNGYIV--ESVELFRTLRILKCELDIQAYSCLIDGLCKSGR------LEIALELFHSLPRGVLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 78 ~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (244)
+.|.++ ++++.++++.+.. +.|..+|+.-.......+. ++++++.++++.... +-|...|+.+-..+.+.
T Consensus 156 ~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 156 TFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERF 233 (306)
T ss_dssp HTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT
T ss_pred HhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhc
Confidence 888888 9999999999987 5788899888888888777 899999999888765 55889999998888888
Q ss_pred CChHH-HHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 150 GQMDK-AHDLFLDMEENA--VAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 150 ~~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
|+... +..+...+.+.+ -..+...+..+...+.+.|+.++|.++++.+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 234 DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 87544 556666665433 1347788889999999999999999999999863
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.89 E-value=5.9e-08 Score=60.60 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccc--cHHHHHHHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA--DVVTYSIMIHGL 146 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 146 (244)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233344444444444444444444444443331 11 233444444444
Q ss_pred Hcc-CChHHHHHHHHHHHH
Q 046446 147 YND-GQMDKAHDLFLDMEE 164 (244)
Q Consensus 147 ~~~-~~~~~a~~~~~~~~~ 164 (244)
... |++++|.+.++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.87 E-value=9.9e-08 Score=61.37 Aligned_cols=95 Identities=11% Similarity=-0.048 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444455555555555555544443 2344444555555555555555555555444432 223444445555555
Q ss_pred ccCChHHHHHHHHHHHH
Q 046446 148 NDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~ 164 (244)
..|++++|...|+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.86 E-value=4.3e-09 Score=73.61 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc----------------HHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELD----------------IQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
..+..+...+...|++++|...|++..+... .+ ..++..+..+|...|++++|...+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444555555566666666666665554321 11 134444444444444444444444444433
Q ss_pred CccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
. +.+...+..+..+|...|++++|...|+...+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 22334444444444444444444444444443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=2.1e-07 Score=58.53 Aligned_cols=97 Identities=13% Similarity=-0.027 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (244)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666666677766666666553 3455566666666666666666666666655442 2245555666666
Q ss_pred HHccCChHHHHHHHHHHHH
Q 046446 146 LYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~ 164 (244)
+...|++++|.+.++...+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.6e-07 Score=60.37 Aligned_cols=98 Identities=16% Similarity=0.045 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
...|......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4456777778888889999999998888763 3367788888888889999999999998888875 4567788888888
Q ss_pred HHcCCCHHHHHHHHHhcccC
Q 046446 111 LCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (244)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 89999999999888887764
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=6.4e-07 Score=70.05 Aligned_cols=196 Identities=10% Similarity=-0.068 Sum_probs=140.4
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHhhhchHHHHHHHHHHHHHcC-CCCCh
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPD----------------VVIHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADT 66 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~ 66 (244)
..+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+++.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456789999999999999988632111 1236778899999999999999999876531 11222
Q ss_pred ----hHHHHHHHHHHhCCcHHHHHHHHHHHHHh----CC-CccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----C-c
Q 046446 67 ----RTYTIFIDGLCKNGYIVESVELFRTLRIL----KC-ELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG----V-L 132 (244)
Q Consensus 67 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~ 132 (244)
.+.+.+...+...|+.+.+.++++..... +. ..-..++..+...|...|++++|..++++.... + .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22334444455678999999999887542 21 223567888999999999999999999876421 1 1
Q ss_pred cccHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CC-CC-c--HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN--AV-AP-N--VITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
+.....+..++..|...|++++|..+++..... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 223567889999999999999999999886632 11 12 1 24456666777888999999988877653
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.83 E-value=3.9e-07 Score=66.66 Aligned_cols=188 Identities=7% Similarity=-0.069 Sum_probs=136.8
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHH-------HHHHHhCCcHHHHHHHHHHHHHhCCCcc---------------
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIF-------IDGLCKNGYIVESVELFRTLRILKCELD--------------- 100 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 100 (244)
..++...|.+.|.++.+.... ....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 579999999999999987332 56677766 3455555555555555544433 1111
Q ss_pred -------HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--H
Q 046446 101 -------IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN--V 171 (244)
Q Consensus 101 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~ 171 (244)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2234556778889999999999999998864 544466777778999999999999998554421 111 2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhccccccchhhhhhhhhhh
Q 046446 172 ITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD--ASIVSIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 172 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+.+....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3677788899999999999999999885443254 3456677789999999999999999886643
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.83 E-value=1.4e-07 Score=60.92 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCc--ccc----HHHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL--VAD----VVTYSIM 142 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 142 (244)
+..+...+.+.|++++|++.|++..+.. |.+..+|..+..+|...|++++|+..+++..+... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444445555555555555555544443 23444445555555555555555555544432210 000 1234444
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~ 164 (244)
..++...|++++|.+.|+...+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555555555555554443
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=4.5e-06 Score=62.71 Aligned_cols=220 Identities=13% Similarity=0.028 Sum_probs=154.9
Q ss_pred hhhcCChh-HHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhhch----------HHHHHHHHHHHHHcCCCCChhHHHHHH
Q 046446 6 YCKNKEIE-GALNLYSEMLSKGIKPD-VVIHNTLFIGLFEIHQ----------VERAFKLFDEMQRDGVAADTRTYTIFI 73 (244)
Q Consensus 6 ~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll 73 (244)
..+.|.++ +|+++++.+... .|+ ...|+.--..+...+. +++++.+++.+..... -+..+|+.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 44566665 799999999987 344 4456654433433333 6889999999988743 3778888877
Q ss_pred HHHHhCC--cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC-HHHHHHHHHhcccCCccccHHHHHHHHHHHHcc-
Q 046446 74 DGLCKNG--YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-LEIALELFHSLPRGVLVADVVTYSIMIHGLYND- 149 (244)
Q Consensus 74 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 149 (244)
-.+...+ ++++++++++.+.+.. +.|..+|+.-...+...|. ++++++.+..+.+.+ +-|...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhh
Confidence 7777777 4899999999999987 6788999888888888888 689999999998775 45788888776666554
Q ss_pred -------------CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCC
Q 046446 150 -------------GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI-----------NEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 150 -------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 205 (244)
+.++++++.+........ -|...|+.+-..+.+. +.++++++.++++.+. .|+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccc
Confidence 457889999988887643 3777787665555544 3567888899998875 355
Q ss_pred hhhHHHHHH-----HHHhccccccchhhhhhhhh
Q 046446 206 ASIVSIVVD-----LLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 206 ~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 234 (244)
. .+..+.. .....|..+++...+..+.+
T Consensus 271 ~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 271 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4 2322222 22234555566666665544
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=9.9e-08 Score=70.54 Aligned_cols=99 Identities=11% Similarity=-0.121 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56778888999999999999999999999875 4588899999999999999999999999998874 446888999999
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 046446 145 GLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~ 165 (244)
++...|++++|...|+...+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.81 E-value=1.1e-07 Score=75.60 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=113.6
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +-+..++..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 45778999999999999998863 3457889999999999999999999999999873 336788999999999999999
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHH--HHcCCCHHHHHHHHH-----------hcccCC-------c---cccHHHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDG--LCKSGRLEIALELFH-----------SLPRGV-------L---VADVVTYS 140 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~-----------~~~~~~-------~---~~~~~~~~ 140 (244)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++ +..... . ..+.....
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 9999999998875 3455566666655 888899999999998 332211 0 12345566
Q ss_pred HHHHHHHccCChH--HHHHHHHHH
Q 046446 141 IMIHGLYNDGQMD--KAHDLFLDM 162 (244)
Q Consensus 141 ~li~~~~~~~~~~--~a~~~~~~~ 162 (244)
.++..+...+... .+..++...
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a 194 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQV 194 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 6777776665543 333344443
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.81 E-value=1.6e-07 Score=58.55 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=85.0
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCc--cHHhHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCEL--DIQAYSCL 107 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 107 (244)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45677788888889999999999999988863 3367788889999999999999999999998765 44 67888999
Q ss_pred HHHHHcC-CCHHHHHHHHHhcccCC
Q 046446 108 IDGLCKS-GRLEIALELFHSLPRGV 131 (244)
Q Consensus 108 l~~~~~~-~~~~~a~~~~~~~~~~~ 131 (244)
..++... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999988764
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.80 E-value=8.7e-08 Score=61.60 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCc--ccc----HHHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL--VAD----VVTYSIM 142 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 142 (244)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444444444444444444432 23334444444444444444444444444333210 000 3344444
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 046446 143 IHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~ 164 (244)
..++...|++++|.+.|+...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444445555555555544444
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.80 E-value=2.3e-07 Score=60.42 Aligned_cols=96 Identities=11% Similarity=-0.117 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (244)
...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444444444555555555555555444433 2334444444444555555555555544444332 2234444444445
Q ss_pred HHccCChHHHHHHHHHHH
Q 046446 146 LYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~ 163 (244)
+...|++++|...|+...
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554443
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=1.4e-07 Score=65.74 Aligned_cols=153 Identities=10% Similarity=-0.083 Sum_probs=105.6
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh----------------hHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT----------------RTYT 70 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~ 70 (244)
...|+++++.+.|+.-.... ......+..+...+...|++++|+..|++..+.... +. .++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHH
Confidence 34455566655554322210 123456777778888999999999999999875222 22 7888
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 71 IFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
.+..++...|++++|+..+++..+.. +.+..++..+..+|...|++++|...|++..+.. +.+...+..+...+...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 89999999999999999999999875 5678889999999999999999999999987653 335677777777777777
Q ss_pred ChHHHH-HHHHHHH
Q 046446 151 QMDKAH-DLFLDME 163 (244)
Q Consensus 151 ~~~~a~-~~~~~~~ 163 (244)
+.+++. ..+..+.
T Consensus 171 ~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 171 EARKKDKLTFGGMF 184 (198)
T ss_dssp HHHC----------
T ss_pred HHHHHHHHHHHHHh
Confidence 666665 4444443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=1.3e-07 Score=62.23 Aligned_cols=86 Identities=13% Similarity=0.043 Sum_probs=33.1
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHH
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLE 118 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 118 (244)
..+.+.|++++|...|++..... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..+|...|+++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33333444444444444433331 1133333334444444444444444444443332 223333333333444444444
Q ss_pred HHHHHHHh
Q 046446 119 IALELFHS 126 (244)
Q Consensus 119 ~a~~~~~~ 126 (244)
+|...|+.
T Consensus 104 ~A~~~~~~ 111 (142)
T 2xcb_A 104 GAESGFYS 111 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.79 E-value=7.5e-08 Score=61.93 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC--Ccc----HHhH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELD----IQAY 104 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 104 (244)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456677777888888888888888887763 33667778888888888888888888888776531 111 6677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 105 SCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 105 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
..+..++...|++++|...|+...+. .|+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 78888888888888888888887765 345555544443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.78 E-value=2.9e-07 Score=62.12 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHH
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGL 146 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (244)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444555555555555555555555443 2344455555555555555555555555544432 22344555555555
Q ss_pred HccCChHHHHHHHHHHHH
Q 046446 147 YNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~ 164 (244)
...|++++|...|+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 555555555555555443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=2.3e-07 Score=59.86 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC--Ccc----HHhHH
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKC--ELD----IQAYS 105 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 105 (244)
..+..+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|++.+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778888889999999999999988863 33677888899999999999999999988876431 111 23677
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHH
Q 046446 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..++...|++++|.+.|++.... .|+..+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 7788888999999999999887764 45655443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=2.3e-07 Score=61.12 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34556677888899999999999999998876 5688889999999999999999999999988764 446778889999
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 046446 145 GLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~ 165 (244)
++...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=3.6e-07 Score=59.42 Aligned_cols=101 Identities=12% Similarity=-0.083 Sum_probs=88.4
Q ss_pred CCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHH
Q 046446 28 KPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (244)
+.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3467788889999999999999999999998874 3367889999999999999999999999999876 5678889999
Q ss_pred HHHHHcCCCHHHHHHHHHhcccC
Q 046446 108 IDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
..+|...|++++|...|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6e-07 Score=59.06 Aligned_cols=98 Identities=14% Similarity=-0.092 Sum_probs=57.9
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD----TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYS 105 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (244)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555666666666666666666666653 333 4555556666666666666666666665543 33455555
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 106 CLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5666666666666666666655543
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=3e-07 Score=62.04 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=86.9
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
.+...+..+...+...|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345678888888999999999999999998874 3377889999999999999999999999999876 56788899999
Q ss_pred HHHHcCCCHHHHHHHHHhcccC
Q 046446 109 DGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.6e-06 Score=66.62 Aligned_cols=197 Identities=10% Similarity=-0.039 Sum_probs=139.5
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCC----------------hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCC-Ccc
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAAD----------------TRTYTIFIDGLCKNGYIVESVELFRTLRILKC-ELD 100 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 100 (244)
...+...|++++|++.|.++.+...... ...+..+...|...|++++|.+.+.++.+.-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999987532211 12477899999999999999999998765311 112
Q ss_pred H----HhHHHHHHHHHcCCCHHHHHHHHHhccc----CCccc-cHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CC--
Q 046446 101 I----QAYSCLIDGLCKSGRLEIALELFHSLPR----GVLVA-DVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN--AV-- 167 (244)
Q Consensus 101 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~-- 167 (244)
. .+.+.+-..+...|++++|..+++.... .+..+ -..++..+...|...|++++|..+++..... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444555677899999998877642 22122 3567888999999999999999999987642 11
Q ss_pred CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CC-C--hhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 168 AP-NVITFGTLIHGFIRINEPSKVIELLHKMKEK--NV-MP-D--ASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 168 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+ ...++..++..|...|++++|...+++.... .+ .| . ...+..+...+...|++++|...|...-+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888899999999999999999887643 11 12 1 24556666777788888888777765543
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=9.9e-07 Score=57.98 Aligned_cols=97 Identities=12% Similarity=-0.095 Sum_probs=51.1
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc----HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD----IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYS 140 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (244)
+...+..+...+...|++++|.+.|++..+.. |+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34445555555566666666666666655432 22 4445555555555555555555555544432 22344555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 046446 141 IMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
.+..++...|++++|...|+...+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.68 E-value=3.6e-07 Score=60.91 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC---c--cHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----Cc-cccHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCE---L--DIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VL-VADVV 137 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 137 (244)
++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++..+. +. .....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554432100 0 0134555555566666666666666554321 10 11134
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEEN----AVA-PNVITFGTLIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
.+..+...+...|++++|.+.++...+. +.. ....++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556666666677777777766665432 111 1123455566666677777777777666543
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.68 E-value=4.6e-07 Score=57.92 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK 113 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 113 (244)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444555666667777777776666652 2255666666666666777777777776666654 3455566666666666
Q ss_pred CCCHHHHHHHHHhcccC
Q 046446 114 SGRLEIALELFHSLPRG 130 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~ 130 (244)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66777776666666554
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.68 E-value=4.9e-07 Score=60.24 Aligned_cols=134 Identities=11% Similarity=-0.010 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC----CC-cc
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-AD----TRTYTIFIDGLCKNGYIVESVELFRTLRILK----CE-LD 100 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~ 100 (244)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. .+ ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346677788888899999999999887654111 11 2467888889999999999999999876532 11 12
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHhcccC----Cc-cccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 101 IQAYSCLIDGLCKSGRLEIALELFHSLPRG----VL-VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
..++..+...+...|++++|...+++.... +. ......+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888999999999999999876532 21 12245677888899999999999999988764
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=3.5e-07 Score=58.51 Aligned_cols=94 Identities=10% Similarity=-0.071 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN 148 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (244)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4445566666777777777777776654 3466666667777777777777777777666543 2345566666666777
Q ss_pred cCChHHHHHHHHHHHH
Q 046446 149 DGQMDKAHDLFLDMEE 164 (244)
Q Consensus 149 ~~~~~~a~~~~~~~~~ 164 (244)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766654
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.64 E-value=6.6e-07 Score=70.80 Aligned_cols=121 Identities=8% Similarity=-0.117 Sum_probs=57.2
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCC--------------hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAAD--------------TRTYTIFIDGLCKNGYIVESVELFRTLRILKCE 98 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 98 (244)
.|..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 455555556666666666666666655311110 2444445555555555555555555554443 2
Q ss_pred ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 99 LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 99 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
.+..+|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555544432 12233444444444444444433
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=2.4e-06 Score=54.80 Aligned_cols=92 Identities=10% Similarity=-0.030 Sum_probs=48.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc---HHhHHHHHHH
Q 046446 37 LFIGLFEIHQVERAFKLFDEMQRDGVAADT---RTYTIFIDGLCKNGYIVESVELFRTLRILKCELD---IQAYSCLIDG 110 (244)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~ 110 (244)
+...+...|++++|...|++..+.... +. ..+..+..++.+.|++++|...|++..+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344455556666666666655554211 12 345555555666666666666666655543 222 3445555555
Q ss_pred HHcCCCHHHHHHHHHhcccC
Q 046446 111 LCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (244)
+...|++++|...|+.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666655543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.61 E-value=2.4e-07 Score=73.74 Aligned_cols=117 Identities=8% Similarity=-0.092 Sum_probs=51.6
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 334445555555555544443 2334445555555555555555555555544432 22344455555555555555555
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHH--HHhcCChhHHHHHHH
Q 046446 156 HDLFLDMEENAVAPNVITFGTLIHG--FIRINEPSKVIELLH 195 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 195 (244)
.+.+++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555444321 122233333333 444455555555554
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=3.5e-06 Score=54.01 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhCCCccH---HhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc---HHHHHHHHH
Q 046446 71 IFIDGLCKNGYIVESVELFRTLRILKCELDI---QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD---VVTYSIMIH 144 (244)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 144 (244)
.+...+...|++++|...|++..+.. +.+. ..+..+..++...|++++|...|++..+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 34445555566666666666655543 1222 345555555666666666666666555432 112 344555555
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 046446 145 GLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~ 165 (244)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 566666666666666655543
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.58 E-value=2.3e-07 Score=58.84 Aligned_cols=88 Identities=13% Similarity=-0.007 Sum_probs=59.8
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKG--IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVES 85 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 85 (244)
..|++++|+..|++..+.+ -+.+...+..+...+...|++++|+..|++..+... -+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888887753 123345677777777788888888888888777632 2566777777788888888888
Q ss_pred HHHHHHHHHhC
Q 046446 86 VELFRTLRILK 96 (244)
Q Consensus 86 ~~~~~~~~~~~ 96 (244)
...+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88887776653
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=1.7e-06 Score=66.48 Aligned_cols=96 Identities=7% Similarity=-0.071 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhC---------------CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILK---------------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVL 132 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 132 (244)
.+..+...+.+.|++++|++.|++..+.- -+.+..+|..+..+|.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 46667777778888888888888776520 01233444555555555555555555555554432
Q ss_pred cccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 133 VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
+.+...|..+..+|...|++++|.+.|+...+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22344455555555555555555555555444
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.56 E-value=1.7e-06 Score=58.10 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHh--------C---------CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRIL--------K---------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.+......+.+.|++++|+..|.+..+. . -+.+...|..+..+|.+.|++++|...++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 0 0122234444445555555555555555544443
Q ss_pred CccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 131 VLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 131 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
. +.+...|..+..+|...|++++|...|+...+
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 2 22344444555555555555555555554444
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=2e-06 Score=68.06 Aligned_cols=131 Identities=12% Similarity=-0.040 Sum_probs=101.7
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc---------------HHhHHHHHHHHHcCCCHHHHHHHHHhccc
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD---------------IQAYSCLIDGLCKSGRLEIALELFHSLPR 129 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 129 (244)
....+..+...+.+.|++++|...|++..+.. +.+ ..+|..+..+|.+.|++++|...+++..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34567888899999999999999999988764 222 57888899999999999999999999887
Q ss_pred CCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 046446 130 GVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIE-LLHKMK 198 (244)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 198 (244)
.. +.+...|..+..+|...|++++|...|+...+... -+...+..+..++.+.++.+++.. .+..|.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 44688889999999999999999999999887532 255677777788888888776654 444443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=1.7e-07 Score=59.51 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=44.7
Q ss_pred hchHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHH
Q 046446 44 IHQVERAFKLFDEMQRDG--VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIAL 121 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 121 (244)
.|++++|+..|++..+.+ -+-+..++..+..++...|++++|++.|++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355556666666655542 12233455555556666666666666666655554 334555555555666666666666
Q ss_pred HHHHhccc
Q 046446 122 ELFHSLPR 129 (244)
Q Consensus 122 ~~~~~~~~ 129 (244)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.52 E-value=1.3e-06 Score=67.15 Aligned_cols=124 Identities=10% Similarity=-0.076 Sum_probs=98.7
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHc---------------CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRD---------------GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 96 (244)
..+..+...+.+.|++++|+..|++..+. -.+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34667778888999999999999988761 112245778889999999999999999999999875
Q ss_pred CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHH
Q 046446 97 CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHD 157 (244)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (244)
+.+..+|..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999988763 3356677777777776666665543
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.51 E-value=8.1e-05 Score=56.26 Aligned_cols=177 Identities=11% Similarity=-0.001 Sum_probs=136.1
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC-C-CH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG-YIVESVELFRTLRILKCELDIQAYSCLIDGLCKS-G-RL 117 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~ 117 (244)
....+..++|+++++++...+.. +..+|+.--..+...| ++++++++++.+.... +-+..+|+.-...+... + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33445567899999999987433 5667887777777788 5999999999999876 57888888887777776 6 88
Q ss_pred HHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH--------HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---
Q 046446 118 EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD--------KAHDLFLDMEENAVAPNVITFGTLIHGFIRINE--- 186 (244)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 186 (244)
++++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++.+.+.... |...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 99999999999875 457888887666666656666 899999999887554 88889988888877776
Q ss_pred ----hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 187 ----PSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 187 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
++++++.++++..... -|...|..+-..+.+.|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 6788888888887642 2667777666666666654
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.49 E-value=1.1e-06 Score=66.67 Aligned_cols=94 Identities=17% Similarity=0.004 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHH-
Q 046446 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP-NVITFGTLIHG- 180 (244)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~- 180 (244)
.|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|+...+. .| +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 45555566666666666666666555432 224555666666666666666666666655432 12 22233333322
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 046446 181 FIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 181 ~~~~g~~~~a~~~~~~~~~ 199 (244)
....+..+.+...|..|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 1223444555555555544
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=3.4e-06 Score=56.66 Aligned_cols=99 Identities=15% Similarity=0.032 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHc-------C----------CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRD-------G----------VAADTRTYTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
...+......+.+.|++++|+..|.+.... . .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777788888888888888887664 0 11133578888888999999999999999988
Q ss_pred HhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 94 ILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 94 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
+.. +.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 876 567888888999999999999999999988776
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.48 E-value=4.2e-05 Score=62.14 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC--cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC-CHHHHHHH
Q 046446 47 VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG--YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG-RLEIALEL 123 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~ 123 (244)
++++++.++.+.+.... +..+|+.-.-++.+.+ +++++++.++++.+.. +.+..+|+.-...+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 44444444444443222 3444444444444444 3344444444444443 234444444444444444 44444444
Q ss_pred HHhcccCCccccHHHHHHHHHH
Q 046446 124 FHSLPRGVLVADVVTYSIMIHG 145 (244)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~li~~ 145 (244)
++++.+.+ +-+...|+.....
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHC-CCCccHHHHHHHH
Confidence 44444433 2234444443333
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.47 E-value=7.7e-07 Score=70.72 Aligned_cols=125 Identities=11% Similarity=-0.090 Sum_probs=88.3
Q ss_pred HhhhchHHHHHHHHHHHHHc---CCCC----ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh-----C--CCccHHhHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRD---GVAA----DTRTYTIFIDGLCKNGYIVESVELFRTLRIL-----K--CELDIQAYSC 106 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 106 (244)
+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.... | .+-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34678888888888877653 1222 2457888888888899999998888876542 2 2234556888
Q ss_pred HHHHHHcCCCHHHHHHHHHhccc-----CC--ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 107 LIDGLCKSGRLEIALELFHSLPR-----GV--LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
|...|...|++++|+.++++... .| .+....+.+.+-.++...+.+++|+.++..+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999998888888876542 12 2223445566677777888899999999888763
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.43 E-value=2.2e-06 Score=68.17 Aligned_cols=125 Identities=13% Similarity=-0.002 Sum_probs=95.3
Q ss_pred HHhCCcHHHHHHHHHHHHHh-----C--CCccHHhHHHHHHHHHcCCCHHHHHHHHHhccc-------CCccccHHHHHH
Q 046446 76 LCKNGYIVESVELFRTLRIL-----K--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPR-------GVLVADVVTYSI 141 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ 141 (244)
+...|++++|+.++++..+. | .+....+++.|...|...|++++|+.++++... ...+-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34678999999999887653 1 223466799999999999999999998887643 122334678999
Q ss_pred HHHHHHccCChHHHHHHHHHHHH-----cCC-CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEE-----NAV-APN-VITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
|...|...|++++|..++++..+ .|. .|+ ..+.+.+-.++...+.+++|+.+|..+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988653 232 233 334556667788899999999999999864
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.9e-06 Score=52.16 Aligned_cols=97 Identities=7% Similarity=0.042 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------hh
Q 046446 135 DVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD-------AS 207 (244)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 207 (244)
+...+..+...+...|++++|.+.|+...+.. +.+...+..+..++...|++++|...+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 56677888888888999999999998887753 2367778888888889999999999999888753 43 55
Q ss_pred hHHHHHHHHHhccccccchhhhhhhhh
Q 046446 208 IVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
.+..+..++...|+.+.++..++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 667777888888888888888776543
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.41 E-value=2.6e-05 Score=50.93 Aligned_cols=87 Identities=11% Similarity=-0.110 Sum_probs=35.2
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----CCCHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Q 046446 72 FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCK----SGRLEIALELFHSLPRGVLVADVVTYSIMIHGLY 147 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (244)
|...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333334444444444444332 23333333333433 344444444444443332 2333344444443
Q ss_pred c----cCChHHHHHHHHHHHH
Q 046446 148 N----DGQMDKAHDLFLDMEE 164 (244)
Q Consensus 148 ~----~~~~~~a~~~~~~~~~ 164 (244)
. .++.++|.+.|+...+
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH
Confidence 3 3444444444444443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=1e-06 Score=66.94 Aligned_cols=141 Identities=11% Similarity=0.038 Sum_probs=80.2
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
..+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|.+.|+++
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCHH
Confidence 4566788888888888887765 344321 233444444433221 237888899999999999
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHH-HHccCChHHHHHHHHHH
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHG-LYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~ 162 (244)
+|+..+++..+.. +.+..+|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+.+...|..|
T Consensus 248 ~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 248 EAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998875 5678889999999999999999999999988764 2245555555555 33456777888888887
Q ss_pred HHc
Q 046446 163 EEN 165 (244)
Q Consensus 163 ~~~ 165 (244)
...
T Consensus 326 l~~ 328 (338)
T 2if4_A 326 FKG 328 (338)
T ss_dssp ---
T ss_pred hCC
Confidence 754
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=5.7e-05 Score=61.37 Aligned_cols=174 Identities=10% Similarity=-0.047 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc----------HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY----------IVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 115 (244)
..++|++.++++...... +..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 457889999999886433 55667766666666666 899999999999887 578889999888999999
Q ss_pred --CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc--------
Q 046446 116 --RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG-QMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI-------- 184 (244)
Q Consensus 116 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 184 (244)
+++++++.++++.+.+ +-+..+|+.-..++.+.| .++++.+.++.+.+.... |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7799999999999876 457889998888888888 899999999998876544 778888877766653
Q ss_pred ------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccccc
Q 046446 185 ------NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224 (244)
Q Consensus 185 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (244)
+.++++.+.+.+...... -+...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 456889999988887542 266777777777777777555
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.37 E-value=1.5e-05 Score=52.05 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=96.9
Q ss_pred hhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CC
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK----NG 80 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 80 (244)
.....+++++|.+.|++..+.| .|+.. +...|...+..+.|.++|++..+.| ++..+..|...|.. .+
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CcCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 3445678999999999999987 33333 6666777778889999999998874 67888889999988 88
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----CCCHHHHHHHHHhcccCC
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCK----SGRLEIALELFHSLPRGV 131 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 131 (244)
++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999999998875 56777888888888 899999999999988876
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.36 E-value=1.3e-05 Score=53.28 Aligned_cols=94 Identities=10% Similarity=-0.072 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-C-----Ch-----hHHHHHHHHHHhCCcHHHHHHHHHHHHHh------
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVA-A-----DT-----RTYTIFIDGLCKNGYIVESVELFRTLRIL------ 95 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 95 (244)
.+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555666777777777777777664221 0 11 15555555566666666666665555543
Q ss_pred -CCCccHHhH----HHHHHHHHcCCCHHHHHHHHHhc
Q 046446 96 -KCELDIQAY----SCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 96 -~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
. +-+...| .....++...|++++|+..|++.
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 2 1233334 44444444444444444444443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.31 E-value=1.4e-05 Score=53.06 Aligned_cols=63 Identities=13% Similarity=-0.070 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC-c-----cH-----HhHHHHHHHHHcCCCHHHHHHHHHhccc
Q 046446 67 RTYTIFIDGLCKNGYIVESVELFRTLRILKCE-L-----DI-----QAYSCLIDGLCKSGRLEIALELFHSLPR 129 (244)
Q Consensus 67 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 129 (244)
..+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556667778888999999999888775421 1 11 1445555555555555555555444443
No 197
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.31 E-value=0.00029 Score=52.97 Aligned_cols=199 Identities=9% Similarity=-0.026 Sum_probs=137.4
Q ss_pred hhhHHHHHHHH---hhhchH-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc----------HHHHHHHHHHHHHhC
Q 046446 31 VVIHNTLFIGL---FEIHQV-ERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY----------IVESVELFRTLRILK 96 (244)
Q Consensus 31 ~~~~~~li~~~---~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 96 (244)
...|..+...+ .+.|.+ ++|+.++..+...+.. +..+|+.=-..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 34454444333 334444 5899999999886322 44456543333333332 678899999998876
Q ss_pred CCccHHhHHHHHHHHHcCC--CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCcHhH
Q 046446 97 CELDIQAYSCLIDGLCKSG--RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ-MDKAHDLFLDMEENAVAPNVIT 173 (244)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~ 173 (244)
+-+..+|+.-...+...+ .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++.+.+..+. |...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 578888988888888888 4899999999998775 5588899888888888888 58999999999987544 7788
Q ss_pred HHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------cccccchhh
Q 046446 174 FGTLIHGFIRI--------------NEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKN-----------EISLNSLPS 228 (244)
Q Consensus 174 ~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~ 228 (244)
|+.....+.+. +.++++++.+.+..... +-|...|+-+-..+.+. +.++++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 88776665554 45778888888888754 22566666555555544 345566666
Q ss_pred hhhhhh
Q 046446 229 FTVHER 234 (244)
Q Consensus 229 ~~~~~~ 234 (244)
++.+.+
T Consensus 261 ~~elle 266 (331)
T 3dss_A 261 CKELQE 266 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655543
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=7.5e-06 Score=50.85 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhccc
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPR 129 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 129 (244)
.+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 23344444444444444444444444444443
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.26 E-value=0.00021 Score=57.10 Aligned_cols=205 Identities=10% Similarity=-0.069 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHH
Q 046446 12 IEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRT 91 (244)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 91 (244)
.+++..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...+. .|+...+.++ +++.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~---~~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA---VYGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH---HHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH---HHHH
Confidence 345778899888753 556778888888888999999999999999987 33333332 2222111111 1233
Q ss_pred HHHhC------------CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc-cCChHHHHHH
Q 046446 92 LRILK------------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN-DGQMDKAHDL 158 (244)
Q Consensus 92 ~~~~~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~ 158 (244)
+.+.- .......|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22210 0112356777777777888999999999999 321 2244445432222222 3369999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 159 FLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
|+...+.. +-++..+...+......|+.+.|..+|+++. .....+...++.=...|+.+.+..+++....
T Consensus 343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99988753 2234456666777778899999999999862 2456677777666777888877777776654
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.16 E-value=2.9e-05 Score=46.19 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
.+..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33334444444444444444444444331 11333344444444444444444444444443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.16 E-value=4.7e-05 Score=45.22 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIH 144 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (244)
+...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35677888899999999999999999998875 4577888999999999999999999999987753 345677777777
Q ss_pred HHHcc
Q 046446 145 GLYND 149 (244)
Q Consensus 145 ~~~~~ 149 (244)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76554
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=3.2e-05 Score=48.51 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
+.|+..|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35667777776653 3456677777777788888888888888877753 235667777777888888888888888777
Q ss_pred HHh
Q 046446 93 RIL 95 (244)
Q Consensus 93 ~~~ 95 (244)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.08 E-value=4.3e-05 Score=50.70 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=63.3
Q ss_pred hhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchH----------HHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046446 6 YCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV----------ERAFKLFDEMQRDGVAADTRTYTIFIDG 75 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 75 (244)
..+.+++++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+.... +..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 345667778888888777763 44666777777777766654 4777777777765322 45667777777
Q ss_pred HHhCC-----------cHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 76 LCKNG-----------YIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 76 ~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
|...| ++++|++.|++..+.. |+...|...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 76653 6777777777766653 4444443333
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.05 E-value=4e-05 Score=48.04 Aligned_cols=24 Identities=4% Similarity=-0.034 Sum_probs=9.0
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
+..+...+...|++++|...|++.
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~a 45 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAA 45 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 333333333333333333333333
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.04 E-value=2.9e-05 Score=51.48 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=62.2
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH----------HHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI----------VESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
..+.+.+++|...+++..+.. +-+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 346678889999998888874 33777888888888777654 57888888877765 4566777778777
Q ss_pred HHcCC-----------CHHHHHHHHHhcccC
Q 046446 111 LCKSG-----------RLEIALELFHSLPRG 130 (244)
Q Consensus 111 ~~~~~-----------~~~~a~~~~~~~~~~ 130 (244)
|...| ++++|...|++..+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 77664 555565555555544
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=5.7e-05 Score=46.15 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhc
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSL 127 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (244)
...+..+...+.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|...|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444443 223344444444444444444444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.94 E-value=0.0001 Score=44.96 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 136 VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
...+..+...|...|++++|...|+...+.... +...|..+..++...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555555443211 33445555555555555555555555544
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.91 E-value=0.00086 Score=50.87 Aligned_cols=142 Identities=11% Similarity=-0.004 Sum_probs=85.2
Q ss_pred CCCChhHHHHHHHHHHh--C---CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHc----CC----C---HHHHHHHHH
Q 046446 62 VAADTRTYTIFIDGLCK--N---GYIVESVELFRTLRILKCELDIQAYSCLIDGLCK----SG----R---LEIALELFH 125 (244)
Q Consensus 62 ~~~~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~----~---~~~a~~~~~ 125 (244)
.+.+...|...+++... . .+..+|..+|++..+.. |-....|..+..+|.. .+ . ...+.+-..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 34456666666655432 2 22356677777776654 2333444433333321 00 0 111222111
Q ss_pred hcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 046446 126 SLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 126 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
.+.. .+.+..+|..+...+...|++++|...++.+...+ |+...|..+...+.-.|++++|.+.+.+.... .|.
T Consensus 269 a~~~--~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~ 342 (372)
T 3ly7_A 269 TLPE--LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPG 342 (372)
T ss_dssp TCGG--GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred hccc--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 1111 24567777777777777789999999999888765 67777777777788889999999998887775 466
Q ss_pred hhhHH
Q 046446 206 ASIVS 210 (244)
Q Consensus 206 ~~~~~ 210 (244)
..||.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 66654
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.87 E-value=0.004 Score=49.75 Aligned_cols=177 Identities=8% Similarity=-0.066 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHh
Q 046446 47 VERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHS 126 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (244)
.+.+..+|+++... .+.+...|...+..+.+.|+.+.|..++++.... |.+...|...... ...++. ...+.+.
T Consensus 195 ~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~ 268 (493)
T 2uy1_A 195 ESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHH
Confidence 45677889988876 4456788888888888999999999999999987 4454444322221 111111 1122222
Q ss_pred cccCC--------ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCChhHHHHHHHHH
Q 046446 127 LPRGV--------LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR-INEPSKVIELLHKM 197 (244)
Q Consensus 127 ~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 197 (244)
..... .......|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11000 0112356777778777888999999999998 32 12344445432222222 34699999999998
Q ss_pred HHCCCCCChhhHHHHHHHHHhccccccchhhhhhh
Q 046446 198 KEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
.+.- +-+...+...++...+.|+.+.|..+|+..
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8753 223444555677777888888888888765
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.74 E-value=0.00015 Score=56.76 Aligned_cols=86 Identities=7% Similarity=-0.063 Sum_probs=56.7
Q ss_pred hhchHHHHHHHHHHHHHc---CCCCC----hhHHHHHHHHHHhCCcHHHHHHHHHHHHHh-----C--CCccHHhHHHHH
Q 046446 43 EIHQVERAFKLFDEMQRD---GVAAD----TRTYTIFIDGLCKNGYIVESVELFRTLRIL-----K--CELDIQAYSCLI 108 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll 108 (244)
..|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.++++.... | .+....+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 456777777777777643 12222 356777777787888888888877776532 2 122344577777
Q ss_pred HHHHcCCCHHHHHHHHHhcc
Q 046446 109 DGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~ 128 (244)
..|...|++++|+.++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 88888888888777777654
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.70 E-value=0.00012 Score=57.40 Aligned_cols=85 Identities=2% Similarity=-0.203 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHc---CCCCC----hhHHHHHHHHHHhCCcHHHHHHHHHHHHHh-----C--CCccHHhHHHHHHH
Q 046446 45 HQVERAFKLFDEMQRD---GVAAD----TRTYTIFIDGLCKNGYIVESVELFRTLRIL-----K--CELDIQAYSCLIDG 110 (244)
Q Consensus 45 ~~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~ 110 (244)
|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.... | .+-...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5677777777766542 12222 356788888888888888888888876542 2 22234557888888
Q ss_pred HHcCCCHHHHHHHHHhccc
Q 046446 111 LCKSGRLEIALELFHSLPR 129 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (244)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888876543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.69 E-value=0.00013 Score=57.08 Aligned_cols=84 Identities=6% Similarity=-0.149 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHHh-------CCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC-----C--ccccHHHHHHHHHHH
Q 046446 81 YIVESVELFRTLRIL-------KCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG-----V--LVADVVTYSIMIHGL 146 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~ 146 (244)
++++|+.++++..+. ..+....+++.|..+|...|++++|+.++++.... | .+-...+++.|...|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 567777777766542 12234567999999999999999999999876531 2 222366799999999
Q ss_pred HccCChHHHHHHHHHHHH
Q 046446 147 YNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~ 164 (244)
...|++++|..++++..+
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 999999999999988664
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.68 E-value=0.00048 Score=58.28 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=48.3
Q ss_pred HhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHH
Q 046446 77 CKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAH 156 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 156 (244)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3445555555543321 3445555555666666666666655555543 223333334455555544
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 157 DLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
++.+.....|. ++....+|.+.|++++|.+++.++
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44444333221 233344455556666666655543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.68 E-value=0.0032 Score=47.82 Aligned_cols=144 Identities=10% Similarity=-0.031 Sum_probs=99.4
Q ss_pred CCChhhHHHHHHHHhh-----hchHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh----CC-cHHHHH---HHHHHHH
Q 046446 28 KPDVVIHNTLFIGLFE-----IHQVERAFKLFDEMQRDGVAAD-TRTYTIFIDGLCK----NG-YIVESV---ELFRTLR 93 (244)
Q Consensus 28 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~----~~-~~~~a~---~~~~~~~ 93 (244)
+.+...|...+++... .....+|..+|++..+. .|+ ...+..+.-+|.. .+ ...... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5677788888866543 24568999999999986 444 3445444444421 11 111111 1222111
Q ss_pred H-hCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHh
Q 046446 94 I-LKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172 (244)
Q Consensus 94 ~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 172 (244)
. ..-+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1225678888888888888899999999999999875 78888888888999999999999999998875 46776
Q ss_pred HHHHH
Q 046446 173 TFGTL 177 (244)
Q Consensus 173 ~~~~l 177 (244)
+|...
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 66543
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.68 E-value=0.0026 Score=53.80 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 65 DTRTYTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455666666666666666666665554
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00021 Score=55.95 Aligned_cols=89 Identities=12% Similarity=-0.006 Sum_probs=69.4
Q ss_pred HHhCCcHHHHHHHHHHHHHhC-------CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC-------CccccHHHHHH
Q 046446 76 LCKNGYIVESVELFRTLRILK-------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG-------VLVADVVTYSI 141 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ 141 (244)
+.+.|++++|+.++++..+.. .+....+++.+..+|...|++++|+.++++.... ..+....+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 335689999999999887531 1234567899999999999999999998876431 12233667899
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|...|...|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.62 E-value=0.00055 Score=41.30 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=34.3
Q ss_pred HHHhhhchHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhCCcHHHHHHHHHHHHHhC
Q 046446 39 IGLFEIHQVERAFKLFDEMQRDGVAADTR-TYTIFIDGLCKNGYIVESVELFRTLRILK 96 (244)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 96 (244)
..+...|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34555666666666666666542 22344 56666666666666666666666666554
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00075 Score=40.69 Aligned_cols=81 Identities=10% Similarity=0.077 Sum_probs=59.3
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVV-IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
...+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|...|++..+.... +..++.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------HH
Confidence 346788999999999999998863 34556 8888899999999999999999999887332 3333311 34
Q ss_pred HHHHHHHHHHHH
Q 046446 82 IVESVELFRTLR 93 (244)
Q Consensus 82 ~~~a~~~~~~~~ 93 (244)
+.++...|++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.35 E-value=0.0047 Score=37.80 Aligned_cols=67 Identities=9% Similarity=-0.031 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDG------VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILK 96 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 96 (244)
+..-+..+...+.+.|+++.|...|+...+.. -.+...++..+..++.+.|+++.|...+++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44555566666777777777777777665431 12244556666667777777777777777666543
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.30 E-value=0.0028 Score=38.02 Aligned_cols=65 Identities=15% Similarity=0.020 Sum_probs=30.7
Q ss_pred ChhHHHHHHHHHHhCCc---HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 65 DTRTYTIFIDGLCKNGY---IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 65 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
|+..+..+..++...++ .++|..++++..+.. +-+..+...+...+...|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 355555555555444 334444444555555555555555555555444
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.12 E-value=0.0048 Score=40.52 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhc---hHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhCCcHHH
Q 046446 10 KEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH---QVERAFKLFDEMQRDGVAA--DTRTYTIFIDGLCKNGYIVE 84 (244)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~ 84 (244)
.....+.+-|.+..+.| +++..+.-.+..++++.+ +.++++.++++..+.. .| ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 34444555555554444 244444444444555544 4556666666655543 12 23344445555566666666
Q ss_pred HHHHHHHHHHh
Q 046446 85 SVELFRTLRIL 95 (244)
Q Consensus 85 a~~~~~~~~~~ 95 (244)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666554
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.03 E-value=0.018 Score=34.45 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046446 134 ADVVTYSIMIHGLYNDGQ---MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKN 201 (244)
Q Consensus 134 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 201 (244)
.+...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|...|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555555543333 46666666666654322 44555555566666666666666666666553
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.02 E-value=0.011 Score=36.12 Aligned_cols=67 Identities=10% Similarity=-0.059 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhC------CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 64 ADTRTYTIFIDGLCKNGYIVESVELFRTLRILK------CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 64 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.++.-+..|...+.+.+++..|...|+...+.. -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556667777777777777777777665431 1233445555666666666666666666655543
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.02 Score=38.58 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=80.4
Q ss_pred HHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH
Q 046446 74 DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (244)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456789999999997765 5788999999999999999999999998875 344555566678888
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
...++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 8777766655543 2566667777889999999998653
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.91 E-value=0.016 Score=37.99 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC---cHHHHHHHHHHHHHhCCCc--cHHhHHHHHHHHHcCCCHHHH
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG---YIVESVELFRTLRILKCEL--DIQAYSCLIDGLCKSGRLEIA 120 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a 120 (244)
....+.+-|.+..+.|. ++..+...+.-++++.+ +.++++.+++...+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555555443 46666666666666666 5557777777766654 23 234444455566777777777
Q ss_pred HHHHHhcccC
Q 046446 121 LELFHSLPRG 130 (244)
Q Consensus 121 ~~~~~~~~~~ 130 (244)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777776664
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.059 Score=36.33 Aligned_cols=128 Identities=10% Similarity=0.111 Sum_probs=92.2
Q ss_pred HHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHH
Q 046446 40 GLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI 119 (244)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 119 (244)
...+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999997765 3788999999999999999999999998753 2446666777888887
Q ss_pred HHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 120 ALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
-.++-+.....| -++.....+...|+++++.++|.+... .| ..+......|-.+.|.++.+++
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 776666655544 245555666778999999999864332 22 1122223467777888887665
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.73 E-value=0.031 Score=40.95 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhC-----CcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC-CCH
Q 046446 47 VERAFKLFDEMQRDGVAAD---TRTYTIFIDGLCKN-----GYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS-GRL 117 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~ 117 (244)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555555555543 333 34555566666553 66666666666666554211355555555555553 666
Q ss_pred HHHHHHHHhcccCC
Q 046446 118 EIALELFHSLPRGV 131 (244)
Q Consensus 118 ~~a~~~~~~~~~~~ 131 (244)
+++.+.+++.....
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 66666666655543
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.62 E-value=0.024 Score=36.94 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046446 150 GQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
++.++|.++|+.+.+.+-.. ...|......-.++|+...|.+++......+.+|. ..+...++-+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl 138 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL 138 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence 67888888888887653333 66666666666788889999999888888765543 3444444433
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.61 E-value=0.025 Score=41.42 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=73.8
Q ss_pred ChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhh-----chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-CCc
Q 046446 11 EIEGALNLYSEMLSKGIKPD---VVIHNTLFIGLFEI-----HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK-NGY 81 (244)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~ 81 (244)
....|...+++..+. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++. .|+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 346777888888876 455 56788888888884 9999999999999996443247778888888888 499
Q ss_pred HHHHHHHHHHHHHhCCC--ccHHhHHHH
Q 046446 82 IVESVELFRTLRILKCE--LDIQAYSCL 107 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~--~~~~~~~~l 107 (244)
.+.+.+.+++....... |+....+.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999999987655 555544443
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.068 Score=44.78 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=80.7
Q ss_pred hhhhhhhcCC-hhHHHHHHHHHHhCCCCCChhhH--HHHHHHHhhhc-hHHHHHHHHHHHHHc------CCCCCh-----
Q 046446 2 LINGYCKNKE-IEGALNLYSEMLSKGIKPDVVIH--NTLFIGLFEIH-QVERAFKLFDEMQRD------GVAADT----- 66 (244)
Q Consensus 2 li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~-~~~~a~~~~~~m~~~------~~~~~~----- 66 (244)
|+..+...++ ++.|..+|+++... .|...++ ..++..+...+ +--+|.+++.+..+. ...+..
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3445555666 58899999999887 4543332 23333333332 233444444444321 122111
Q ss_pred ------hHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcc
Q 046446 67 ------RTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 67 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (244)
...+.=.+.+...|+++.|+++-++..... |-+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222345667899999999999998875 5678899999999999999999999999874
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.18 E-value=0.068 Score=34.86 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 046446 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169 (244)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 169 (244)
++.++|.++|+.+.+.+-.. ...|....+.=.+.|+.+.|.+++......+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56677777777665433222 6666666666677888888888887777765553
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.08 Score=44.37 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=79.8
Q ss_pred HHHHHHHhhhch-HHHHHHHHHHHHHcCCCCChhH--HHHHHHHHHhCCc-HHHHHHHHHHHHHh------CCCccH---
Q 046446 35 NTLFIGLFEIHQ-VERAFKLFDEMQRDGVAADTRT--YTIFIDGLCKNGY-IVESVELFRTLRIL------KCELDI--- 101 (244)
Q Consensus 35 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~--- 101 (244)
..++..+...++ .+.|..+++++.... |...+ ...++..+.+.++ --+|.+++.+..+. ..++..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555555 688999999998873 33333 2233444433332 22455555444321 111111
Q ss_pred --------HhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046446 102 --------QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDM 162 (244)
Q Consensus 102 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (244)
.....=...+...|+++.|+.+-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222345667899999999999987763 445889999999999999999999999876
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.10 E-value=0.12 Score=32.62 Aligned_cols=82 Identities=10% Similarity=-0.012 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHH---HHHHHHhcccCCcc-ccHHHHHHHHHHHHccCChHHHHHH
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEI---ALELFHSLPRGVLV-ADVVTYSIMIHGLYNDGQMDKAHDL 158 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 158 (244)
..+.+-|......|. ++..+--.+..++.+...... +..+++.+...+.+ -.......|.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444342 555555555555555554443 55666665554311 1233344445556666666666666
Q ss_pred HHHHHHc
Q 046446 159 FLDMEEN 165 (244)
Q Consensus 159 ~~~~~~~ 165 (244)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666653
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.93 E-value=0.14 Score=32.29 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=54.8
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH---HHHHHHHHHHhCCC-ccHHhHHHHHHHHHcCCCHH
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE---SVELFRTLRILKCE-LDIQAYSCLIDGLCKSGRLE 118 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~ 118 (244)
.......+.+-|......|. |+..+-..+.-++.+...... ++.+++.+.+.+.+ ......-.|.-++.+.|+++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 34445555566665555444 566666667777777666555 77777777665421 13333444566778888888
Q ss_pred HHHHHHHhcccC
Q 046446 119 IALELFHSLPRG 130 (244)
Q Consensus 119 ~a~~~~~~~~~~ 130 (244)
+|.+.++.+.+.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887765
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.78 E-value=0.036 Score=42.75 Aligned_cols=73 Identities=7% Similarity=0.063 Sum_probs=59.5
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHH-----hCCCccHHhHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRI-----LKCELDIQAYSC 106 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 106 (244)
....++..+...|+.++++..+..+... .+.+...+..+|.++.+.|+..+|++.|++..+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4556777888899999999999888776 455778999999999999999999999988754 588888776543
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.70 E-value=0.16 Score=30.52 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046446 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
-+..+-++.+....+.|++......+++|.+.+++..|.++++-.+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555555444
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.68 E-value=0.38 Score=42.75 Aligned_cols=209 Identities=12% Similarity=0.098 Sum_probs=121.7
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-------------------
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVA------------------- 63 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------- 63 (244)
+..+...+.++.|.++.... +.++...-.+..++...|++++|.+.|++... |+.
T Consensus 819 ~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 34455666666666544322 22444445666778888999999999976421 110
Q ss_pred ----CChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc----HHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc
Q 046446 64 ----ADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD----IQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135 (244)
Q Consensus 64 ----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (244)
.-..-|..++..+.+.+.++.+.++-+...+...+.+ ...|..+.+.+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 0123467788888888888888888777665432211 22578888999999999999988877765432 2
Q ss_pred HHHHHHHHHHHHccCCh------------HHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCChhHHHHH-HHHHHHC
Q 046446 136 VVTYSIMIHGLYNDGQM------------DKAHDLFLDMEEN--AVAPNVITFGTLIHGFIRINEPSKVIEL-LHKMKEK 200 (244)
Q Consensus 136 ~~~~~~li~~~~~~~~~------------~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 200 (244)
......++...+..|.. ++..+++..-.+. .....+.-|..|-.-....|++..|..+ |+.+.+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 45566666666655543 4444444332111 1111122355555556667777665554 4554432
Q ss_pred C---CCCC-------hhhHHHHHHHHHhc
Q 046446 201 N---VMPD-------ASIVSIVVDLLAKN 219 (244)
Q Consensus 201 ~---~~~~-------~~~~~~l~~~~~~~ 219 (244)
+ -.+. ...|-++|+++.-.
T Consensus 1051 ~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1051 ISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 1 1111 24566666666544
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.65 E-value=0.23 Score=31.91 Aligned_cols=138 Identities=13% Similarity=0.095 Sum_probs=83.7
Q ss_pred hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHH
Q 046446 44 IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 123 (244)
.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+ ..|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHH
Confidence 35566666666555543 1333333333333333344444444443321 1221 234555555555
Q ss_pred HHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 046446 124 FHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVM 203 (244)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 203 (244)
+-.+-. +...+...+......|..+...+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444432 345567777888888999988888888644 34677888888888999999999999999988888864
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.57 E-value=0.25 Score=31.75 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=94.8
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 7 CKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
.-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-.. .|.. ..|+...+.
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 3468888888888888764 36667888877766666666666666655432 2322 233444444
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (244)
..+-.+ ..+.......++.....|..++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 443332 234455666777888888888888888885443 26778888888889999999999998888888877
Q ss_pred CC
Q 046446 167 VA 168 (244)
Q Consensus 167 ~~ 168 (244)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.33 E-value=0.23 Score=29.88 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=50.1
Q ss_pred HHcCC-CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 046446 111 LCKSG-RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179 (244)
Q Consensus 111 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 179 (244)
+.+.. +.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+ ..+...+|..++.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 33444 45567777888888888889999999999999999999999999887754 2233455766654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.21 E-value=0.29 Score=37.75 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=56.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCChhhHHHHH
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKE-----KNVMPDASIVSIVV 213 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 213 (244)
...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|.+.|+.+.. .|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3455677778888888888888877643 34777888888999999999999888888653 48888877655443
Q ss_pred H
Q 046446 214 D 214 (244)
Q Consensus 214 ~ 214 (244)
.
T Consensus 253 ~ 253 (388)
T 2ff4_A 253 R 253 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.03 E-value=0.37 Score=30.69 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046446 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVD 214 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (244)
-+..+-++.+....+.|++......+.+|.+.+++..|.++++-.+.+ ..+....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 344444444545555555555555555555555555555555555433 1223334444444
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.75 E-value=1.2 Score=35.07 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=30.3
Q ss_pred CChhHHHHHHHHHHhC-----CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHH
Q 046446 10 KEIEGALNLYSEMLSK-----GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQ 58 (244)
Q Consensus 10 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 58 (244)
|+++.|++.+-.+.+. +...+......++..|...|+++...+.+.-+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5677777766555432 233345566677777777787777766555443
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.54 E-value=0.52 Score=30.05 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 046446 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHG 180 (244)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 180 (244)
+.-+..+-++.+...++.|++....+.+.+|.+.+|+..|.++|+-++.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 44566777788888888999999999999999999999999999988754 33445567766653
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.79 E-value=1.6 Score=34.15 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=31.5
Q ss_pred hhhhhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHH
Q 046446 4 NGYCKNKEIEGALNLYSEMLSK--GIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 59 (244)
..|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+++...
T Consensus 139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666666666666553 2222334455555666666666666666665543
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.58 E-value=3.8 Score=36.52 Aligned_cols=144 Identities=12% Similarity=-0.017 Sum_probs=92.3
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC----Cc---------------
Q 046446 72 FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG----VL--------------- 132 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--------------- 132 (244)
++..+...+..+.+.++... ++.+...--.+..+|...|++++|..+|++.-.. +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555555555443322 2334444445667888999999999999875321 00
Q ss_pred ---cccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 046446 133 ---VADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPN----VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 133 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
..-..-|..++..+-+.+.++.+.++-....+....-+ ...|..++.++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 00112366777888888889888888777665322112 125778888899999999999888887765433
Q ss_pred hhhHHHHHHHHHhcccc
Q 046446 206 ASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 206 ~~~~~~l~~~~~~~g~~ 222 (244)
...+..|+..++..|..
T Consensus 971 ~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 45667777777776655
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.54 E-value=0.66 Score=30.82 Aligned_cols=115 Identities=10% Similarity=0.037 Sum_probs=61.2
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC-CCCCCh-------hhHHHHHHHHhhhchHHHHHHHHHHHHHc--CCCCChhHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK-GIKPDV-------VIHNTLFIGLFEIHQVERAFKLFDEMQRD--GVAADTRTYTIF 72 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l 72 (244)
+..+...|.++.|+-+.+.+... +..|+. .++..+..++...+++.+|...|++..+. .+.-+..+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 34566777888888777775543 112331 24455667777788888888888876432 111111111111
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 73 IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
. . . ..... ......+...--.+..+|...+++++|+.+++.+...
T Consensus 107 ~-~--~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 G-N--S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c-c--c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 0 0 00000 0011233344444778888999999999999887655
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.32 E-value=0.00024 Score=55.57 Aligned_cols=118 Identities=13% Similarity=0.045 Sum_probs=71.3
Q ss_pred ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHH
Q 046446 30 DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLID 109 (244)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 109 (244)
|+..|..+|.+..+.|.+++-+.++.-.++. .-++..=+.|+-+|++.++..+.++++. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 5667778888888888888888877655544 2244555678888888877655443332 355555566666
Q ss_pred HHHcCCCHHHHHHHHHhcccCC--------------------ccccHHHHHHHHHHHHccCChHHHH
Q 046446 110 GLCKSGRLEIALELFHSLPRGV--------------------LVADVVTYSIMIHGLYNDGQMDKAH 156 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~ 156 (244)
-|...|.++.|.-+|..+.... ..-++.||-.+..+|...+.+.-|.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 6666666666665555443211 0124556666666666655554443
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.14 E-value=2.5 Score=33.20 Aligned_cols=190 Identities=11% Similarity=0.096 Sum_probs=117.2
Q ss_pred hchHHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHH----HcC
Q 046446 44 IHQVERAFKLFDEMQRD-----GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL----CKS 114 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 114 (244)
.|+++.|++.+..+.+. ....+......++..|...++++...+.+.-+.+..-.. ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 47888888887766543 334456778889999999999999988877665432121 22223333333 222
Q ss_pred CC--HHHHHHHHHhccc--CC-ccc---cHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCc---HhHHHHHHHHH
Q 046446 115 GR--LEIALELFHSLPR--GV-LVA---DVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN--AVAPN---VITFGTLIHGF 181 (244)
Q Consensus 115 ~~--~~~a~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~ 181 (244)
.. .+.-..+.+.... .| +-. .......|...+...|++.+|..++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2222333333221 11 111 2234467788899999999999999987632 22222 34566778889
Q ss_pred HhcCChhHHHHHHHHHHH----CCCCCC--hhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 182 IRINEPSKVIELLHKMKE----KNVMPD--ASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
...+++.+|..++..+.. ....|+ ...+...+..+...+++.+|-+.|..+-.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999888653 222222 23455666677777788777666655543
No 250
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=92.09 E-value=2.4 Score=31.46 Aligned_cols=80 Identities=9% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE--PSKVIELLHKMKEKNVMPDASIVSIVVDLL 216 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (244)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+.+..++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 457777888889999999988887631111 12233333344444332 355667777777666655544444444444
Q ss_pred Hhc
Q 046446 217 AKN 219 (244)
Q Consensus 217 ~~~ 219 (244)
...
T Consensus 248 ~~l 250 (307)
T 2zu6_B 248 NEI 250 (307)
T ss_dssp HHH
T ss_pred Hhc
Confidence 433
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=1.5 Score=34.29 Aligned_cols=97 Identities=7% Similarity=-0.109 Sum_probs=64.6
Q ss_pred hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh---CCCccHHh--H
Q 046446 32 VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAA--DTRTYTIFIDGLCKNGYIVESVELFRTLRIL---KCELDIQA--Y 104 (244)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 104 (244)
.++..+...|.+.|+++.|.+.|.++...-..+ -...+-.+++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356778888889999999999999988753332 3456777888888889999998888887543 21222211 1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcc
Q 046446 105 SCLIDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 105 ~~ll~~~~~~~~~~~a~~~~~~~~ 128 (244)
..-...+...+++.+|...|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 111223345678888887776643
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.97 E-value=1.8 Score=28.73 Aligned_cols=127 Identities=9% Similarity=-0.061 Sum_probs=72.1
Q ss_pred CCCCChh--hHHHHHHHHhhhchHHHHHHHHHHHHHcC-CCCCh-------hHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 26 GIKPDVV--IHNTLFIGLFEIHQVERAFKLFDEMQRDG-VAADT-------RTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 26 ~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
|+.|... .+-.-+..+...+.++.|+-+.+-+.... ..|+. .++..+.+++...+.+..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445433 34455777888899999988887754431 22331 36677888999999999999999997543
Q ss_pred C--CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 96 K--CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 96 ~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
. +..+..+...+- ....... ......+...-.-+...|.+.+++++|+.+++.+...
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 2 221221111110 0000000 0111335555566888899999999999999876543
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.97 E-value=3.4 Score=31.87 Aligned_cols=164 Identities=10% Similarity=-0.080 Sum_probs=83.9
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHc-CCCC---ChhHHHHHHHHHHhCC-cHHHHHHHHHHHHHhCCCccHHhH---
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAA---DTRTYTIFIDGLCKNG-YIVESVELFRTLRILKCELDIQAY--- 104 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--- 104 (244)
....+...|.+.|+.++..+++...+.- +..| .......++..+.... ..+.-.++..+..+.. .-...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3445666677777777777776665432 1111 1234556666665532 3333334443333221 0111222
Q ss_pred ---HHHHHHHHcCCCHHHHHHHHHhcccC----C-ccccHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCcHhHH
Q 046446 105 ---SCLIDGLCKSGRLEIALELFHSLPRG----V-LVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN--AVAPNVITF 174 (244)
Q Consensus 105 ---~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~ 174 (244)
..++..|...|++.+|.+++.++.+. + -..-...+-.-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25677777777777777776665431 1 0111334555566777777777777777665421 122333222
Q ss_pred HHH----HHHHH-hcCChhHHHHHHHHH
Q 046446 175 GTL----IHGFI-RINEPSKVIELLHKM 197 (244)
Q Consensus 175 ~~l----~~~~~-~~g~~~~a~~~~~~~ 197 (244)
..+ ...+. ..++|..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 211 12233 567777777666554
No 254
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=91.01 E-value=4.1 Score=30.95 Aligned_cols=214 Identities=11% Similarity=0.050 Sum_probs=103.9
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhc--hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIH--QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
+|.-|...++.++|...++++..... .......+|......+ .-+.+-.++..+.. ++-+.......+...+...
T Consensus 60 ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 60 IIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 57788889999999998888653221 2333344444433333 34556666666663 4444444444444433333
Q ss_pred Cc----HHHHHHHH----HHHHHhCC-CccHHhHHHHHHHHHcCC--CHHHHHHHHH------hcc-----cCCcccc--
Q 046446 80 GY----IVESVELF----RTLRILKC-ELDIQAYSCLIDGLCKSG--RLEIALELFH------SLP-----RGVLVAD-- 135 (244)
Q Consensus 80 ~~----~~~a~~~~----~~~~~~~~-~~~~~~~~~ll~~~~~~~--~~~~a~~~~~------~~~-----~~~~~~~-- 135 (244)
.+ ...|..++ .++...++ +|... .......-+..| -.+.|..++. ++. ..+..|.
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l-~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~vee 215 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYI-DSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNH 215 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTT-GGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHH
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHH-HHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHH
Confidence 22 12233333 33333332 22211 100000000000 0122222221 011 1112232
Q ss_pred -HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhhHHHH
Q 046446 136 -VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE--PSKVIELLHKMKEKNVMPDASIVSIV 212 (244)
Q Consensus 136 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (244)
....+.++.=|...++.++|.+.++++..-... ...+...+..++-+.++ .+.+..++..+...|+-+.......+
T Consensus 216 lkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 216 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 223577888888899999999999888642111 23334444445544433 35677788888877766555555555
Q ss_pred HHHHHhcc
Q 046446 213 VDLLAKNE 220 (244)
Q Consensus 213 ~~~~~~~g 220 (244)
.+.+....
T Consensus 295 ~~vl~~ld 302 (358)
T 3eiq_C 295 ERIYNEIP 302 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 55444433
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.93 E-value=2 Score=27.31 Aligned_cols=68 Identities=16% Similarity=0.072 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHhCCc---HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 63 AADTRTYTIFIDGLCKNGY---IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 63 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.|+..+--...-++.+..+ ...++.+++.+.+.+.......+--|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444444344444444332 2345555555544431112333333444555555555555555555544
No 256
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=90.54 E-value=3.2 Score=28.90 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=46.2
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHH--HHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVI--HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTY--TIFIDGLC 77 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~ 77 (244)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++.... .+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45667788888888888877766665544321 1123334445666543 3444555655443211 12333444
Q ss_pred hCCcHHHHHHHHHH
Q 046446 78 KNGYIVESVELFRT 91 (244)
Q Consensus 78 ~~~~~~~a~~~~~~ 91 (244)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 56676655555544
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.20 E-value=5.2 Score=30.85 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=95.6
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHhhh-chHHHHHHHHHHHHHcCCCCChhHH------H
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSK-GIKP---DVVIHNTLFIGLFEI-HQVERAFKLFDEMQRDGVAADTRTY------T 70 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~------~ 70 (244)
|...|.+.|+.++..+++.....- +.-| .......++..+... +..+.-.++..+..+..- -+..+| .
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 456788889988888888776543 1112 233455677776553 334444444444433210 022233 2
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhCCC-----ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC--CccccHHHHH---
Q 046446 71 IFIDGLCKNGYIVESVELFRTLRILKCE-----LDIQAYSCLIDGLCKSGRLEIALELFHSLPRG--VLVADVVTYS--- 140 (244)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 140 (244)
.++..|...|++.+|.+++.++.+.--. .-...+..-+..|...+++.++...+...... .+.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5788889999999999988888764212 12334666677888889988888888765432 1112222211
Q ss_pred -HHHHHHH-ccCChHHHHHHHHHHH
Q 046446 141 -IMIHGLY-NDGQMDKAHDLFLDME 163 (244)
Q Consensus 141 -~li~~~~-~~~~~~~a~~~~~~~~ 163 (244)
.-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1123345 6788888888776653
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.14 E-value=11 Score=32.89 Aligned_cols=90 Identities=19% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHH--HHHHHHHhcCC
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFG--TLIHGFIRINE 186 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~ 186 (244)
..+.-.|+.+....++..+.+.. .-+..-.-.+.-++...|+.+.+..+++.+... ..|....-. .+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 33445566666666666554431 111222222223334567777777777666642 112222111 22234556666
Q ss_pred hhHHHHHHHHHHHC
Q 046446 187 PSKVIELLHKMKEK 200 (244)
Q Consensus 187 ~~~a~~~~~~~~~~ 200 (244)
.....+++..+...
T Consensus 576 ~~aIq~LL~~~~~d 589 (963)
T 4ady_A 576 NSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC
Confidence 66555566666653
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.40 E-value=2.1 Score=31.02 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=26.9
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
..+.|++++++.....-.+.. +-|...=..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455555555555444432 224444445555555555555555555555443
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.92 E-value=3.7 Score=26.13 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=28.9
Q ss_pred ccHHhHHHHHHHHHcCCC---HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 99 LDIQAYSCLIDGLCKSGR---LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 99 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|+..+--.+..++.+..+ ..++..+++.+.+.+..-....+..+.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444443334444444333 224444554444432111233344444455555555555555555544
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.17 E-value=3.4 Score=24.85 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=19.5
Q ss_pred HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046446 111 LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
+...|++++|..+.+..- .||...|-+|... +.|-.+++..-+..+.
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 344444444444444333 2444444444332 3334444444443333
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.76 E-value=5.9 Score=27.25 Aligned_cols=56 Identities=13% Similarity=-0.135 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHHhCCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc
Q 046446 80 GYIVESVELFRTLRILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135 (244)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (244)
+...+...+|..|...|+- --...|......+...|++++|..+|+.-.+.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3355666777777666542 2344466666666677777777777776666655553
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.34 E-value=0.0089 Score=47.10 Aligned_cols=118 Identities=13% Similarity=0.161 Sum_probs=65.1
Q ss_pred cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 046446 100 DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIH 179 (244)
Q Consensus 100 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 179 (244)
.+..|..|..++...++..+|.+.|-+.. |+..|..+|.+..+.|.+++...++...++..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 34456666666666666655554332211 344566666666667777766666655554322 3333456666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhh
Q 046446 180 GFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 232 (244)
Q Consensus 180 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (244)
+|++.++..+.++++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 6666666554433221 255555556666666666666665555443
No 264
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=84.62 E-value=8.7 Score=27.22 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=45.7
Q ss_pred hhhhhhcCChhHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSK--GIKP----DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGL 76 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 76 (244)
++.+....++++|.+++++..+. ++++ ........+..-.....-.-+..+.+.+. . .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHHH
Confidence 45566677777777777765542 2222 11222233333333333344444444442 2 34555556666677
Q ss_pred HhCCcHHHHHHHHHHHH
Q 046446 77 CKNGYIVESVELFRTLR 93 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~ 93 (244)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777665543
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.20 E-value=5 Score=24.11 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=24.2
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
+...|++++|..+.+... .||...|.+|.. .+.|..+++..-+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555444322 455555544432 34455555555554554444
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.57 E-value=5.4 Score=24.01 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHH--HHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHH
Q 046446 46 QVERAFKLFDEMQRDGVAADTRTYTIF--IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALEL 123 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 123 (244)
.-++|..+-+-+...+. .-...+ +..+...|++++|..+.+... .||...|.+|.. .+.|..+++..-
T Consensus 22 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 45566555555554432 222222 233455677777766655432 466666655543 345666666666
Q ss_pred HHhcccCCccccHHHH
Q 046446 124 FHSLPRGVLVADVVTY 139 (244)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (244)
+.++...| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 65665555 3444444
No 267
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=83.48 E-value=6.5 Score=26.37 Aligned_cols=16 Identities=0% Similarity=0.057 Sum_probs=8.5
Q ss_pred hhhhhcCChhHHHHHH
Q 046446 4 NGYCKNKEIEGALNLY 19 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~ 19 (244)
...+..|+.+.+..++
T Consensus 10 ~~A~~~g~~~~v~~ll 25 (201)
T 3hra_A 10 LEAANQRDTKKVKEIL 25 (201)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHH
Confidence 3445556655555554
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.18 E-value=12 Score=27.79 Aligned_cols=121 Identities=8% Similarity=-0.005 Sum_probs=69.8
Q ss_pred hhhhcCChhHHHHHHHHHHhCCC---CCC--hhhHHHHHHHHhhhchHHHHHHH----HHHHHHcCCCCChhHHHHHHHH
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGI---KPD--VVIHNTLFIGLFEIHQVERAFKL----FDEMQRDGVAADTRTYTIFIDG 75 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~ 75 (244)
.....|++=+|.+.++....+-+ +.+ ......-...+.+.|+...|-++ .+...+.+.+++......++..
T Consensus 22 ~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34556777777776665443200 111 11122222334456666555554 4555667888888888888888
Q ss_pred HHhCCcHH-HHHHHHHHHH----HhC--CCccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 046446 76 LCKNGYIV-ESVELFRTLR----ILK--CELDIQAYSCLIDGLCKSGRLEIALELFH 125 (244)
Q Consensus 76 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (244)
+.....-+ .-.++++++. +.| ..-++..+..+...|.+.|++.+|+..|-
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 76643211 1233333333 332 12467788888899999999988887663
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.80 E-value=24 Score=30.85 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=35.9
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHH--HHHHhCCcHHHHHHHHHHHHHhCCCccHHhHH--HHHHHHHcCCC
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFI--DGLCKNGYIVESVELFRTLRILKCELDIQAYS--CLIDGLCKSGR 116 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~ 116 (244)
+...|+-+....++..+.+.. +..+...+. -++...|+.+.+..+++.+.... .|....-. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334455555555555544321 222222222 22334555555555555554421 12221111 22334455555
Q ss_pred HHHHHHHHHhccc
Q 046446 117 LEIALELFHSLPR 129 (244)
Q Consensus 117 ~~~a~~~~~~~~~ 129 (244)
.....++++.+..
T Consensus 576 ~~aIq~LL~~~~~ 588 (963)
T 4ady_A 576 NSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 5554445555543
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.69 E-value=7.6 Score=25.07 Aligned_cols=67 Identities=16% Similarity=0.070 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHhCCc---HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 64 ADTRTYTIFIDGLCKNGY---IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 64 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
|+..+-....-++.+... ..+++.+++.+.+.+........-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444444444444332 2334445554444331112222223334445555555555555554443
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.23 E-value=7.9 Score=24.98 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=30.5
Q ss_pred ccHHhHHHHHHHHHcCCCH---HHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 99 LDIQAYSCLIDGLCKSGRL---EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 99 ~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
|+..+--.+..++.+..+. .++..+++.+...+..-.......|.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444432 34555555544432111233333444455555555555555555554
No 272
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=81.85 E-value=8.1 Score=24.87 Aligned_cols=61 Identities=7% Similarity=0.050 Sum_probs=35.5
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 161 DMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 161 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|..
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566655443 2333444444555566777777776666555666666666666666655
No 273
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=81.85 E-value=2.1 Score=30.38 Aligned_cols=55 Identities=15% Similarity=0.052 Sum_probs=33.8
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhh-------HHHHHHHHh--hhchHHHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVI-------HNTLFIGLF--EIHQVERAFKLFDEM 57 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~m 57 (244)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4556778888888888887777665555332 234444432 457766666666543
No 274
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=81.11 E-value=8.3 Score=24.49 Aligned_cols=59 Identities=5% Similarity=-0.004 Sum_probs=27.1
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 163 EENAVAPNVITFGTLIHGFIRIN-EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 163 ~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3444444332 222333333333 4445555555555554444555555555555555544
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=81.10 E-value=12 Score=26.44 Aligned_cols=88 Identities=15% Similarity=0.065 Sum_probs=54.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHc--CCCC----ChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH
Q 046446 37 LFIGLFEIHQVERAFKLFDEMQRD--GVAA----DTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG 110 (244)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 110 (244)
-++.+....++++|.+++++..+. +.++ +.......++.-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 356788889999999999887653 2332 112223333433333333444455555533 4556667777889
Q ss_pred HHcCCCHHHHHHHHHhc
Q 046446 111 LCKSGRLEIALELFHSL 127 (244)
Q Consensus 111 ~~~~~~~~~a~~~~~~~ 127 (244)
+.+.|+.++|..+|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 99999999999888543
No 276
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=80.77 E-value=8.8 Score=24.90 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=34.3
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccc
Q 046446 162 MEENAVAPNVITFGTLIHGFIRIN-EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISL 223 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (244)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|...
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 44556555443 223344444444 45566677777666655556666666666666666553
No 277
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=80.11 E-value=7.4 Score=25.10 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=30.9
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 44455554443 222333333444 455666666666655555555555566666665554
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.53 E-value=18 Score=27.26 Aligned_cols=106 Identities=12% Similarity=-0.010 Sum_probs=60.1
Q ss_pred HhhhchHHHHHHH----HHHHHHcCCCCChhHHHHHHHHHHhCCcHH-HHHHHHHHHH----HhC--CCccHHhHHHHHH
Q 046446 41 LFEIHQVERAFKL----FDEMQRDGVAADTRTYTIFIDGLCKNGYIV-ESVELFRTLR----ILK--CELDIQAYSCLID 109 (244)
Q Consensus 41 ~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~ 109 (244)
+.+.|+...+-++ .+.+.+.++++|......++..+.....-+ .-..+.+++. +.| ..-++.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3445555444433 355566678888888888887777654311 1223333333 223 2345667777888
Q ss_pred HHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 110 GLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
.|.+.+++.+|+..|- . |-.++...+..++.-+...+
T Consensus 145 ~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred HHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 8888888888887773 2 21233456655544444333
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=79.24 E-value=4.2 Score=28.13 Aligned_cols=175 Identities=13% Similarity=0.031 Sum_probs=77.9
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVI--HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT---YTIFIDGLC 77 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~ 77 (244)
+...++.|+++.+..++ +.|..++... -...+...+..|+.+-+.. +.+.|..++... -.+.+...+
T Consensus 13 l~~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 13 IVKATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred HHHHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHH
Confidence 44566778866655544 4554443321 1234455566777665444 444444333211 112334444
Q ss_pred hCCcHHHHHHHHHHHHHhCCCccH---HhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHH
Q 046446 78 KNGYIVESVELFRTLRILKCELDI---QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154 (244)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 154 (244)
..|+.+- ++.+.+.|..++. ... ..+...+..|+.+-+..+++.-.... ..+....+.+..+... +....
T Consensus 85 ~~~~~~~----v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~-~~~~~ 157 (240)
T 3eu9_A 85 RQGHLSM----VVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYR-THSVD 157 (240)
T ss_dssp HHTCHHH----HHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH-CCSST
T ss_pred HcCCHHH----HHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHh-CChHH
Confidence 5566554 3444444544332 222 23445556677775555555322111 1122222334333333 33333
Q ss_pred HHHHHHHHHHcCCCCcHhH---HHHHHHHHHhcCChhHHHHHHH
Q 046446 155 AHDLFLDMEENAVAPNVIT---FGTLIHGFIRINEPSKVIELLH 195 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~ 195 (244)
..++ +.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 158 ~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 158 PTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp THHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 3333 334444433221 1233445556777765444443
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.53 E-value=14 Score=25.47 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcccCCcccc-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 046446 117 LEIALELFHSLPRGVLVAD-VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP 169 (244)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 169 (244)
..++..+|..|...|+... ..-|......+-..|++.+|.++|+.-.+.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554443222 3344455555555555555555555555544444
No 281
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=78.16 E-value=11 Score=24.36 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=33.7
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 162 MEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 162 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|..
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44556554432 2334444445555666777777776665555666666666666666655
No 282
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=77.62 E-value=13 Score=24.56 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcccc
Q 046446 163 EENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEK--NVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 163 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|..
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554332 233344444444555555666555554 4444555555555555555544
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=77.57 E-value=11 Score=23.78 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=33.1
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhh--chHHHHHHHHHHHHHcCCCC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI--HQVERAFKLFDEMQRDGVAA 64 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~ 64 (244)
++.-|...|+.++|.+.++++.... -....+...+..++-+. ...+.+..++..+...|+-+
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4566777777777777777764211 11222333344444433 22456666666666655443
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.95 E-value=17 Score=25.72 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=9.5
Q ss_pred hhhhhhcCChhHHHHHH
Q 046446 3 INGYCKNKEIEGALNLY 19 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~ 19 (244)
+...++.|+.+.+..++
T Consensus 9 L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 44556677765544444
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.88 E-value=13 Score=24.29 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc
Q 046446 84 ESVELFRTLRILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (244)
+..++|..|...|+- -....|......+...|++++|.++|+.-.+.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 377888888877653 3455577778888888888888888888777766664
No 286
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.60 E-value=10 Score=22.84 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHH
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+..- .||...|-+|... +.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34555555555444332 22222222334445556665555444433 3555555555432 4455555555554
Q ss_pred HHHHc
Q 046446 161 DMEEN 165 (244)
Q Consensus 161 ~~~~~ 165 (244)
.+...
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 44443
No 287
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=75.93 E-value=8.5 Score=21.74 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=46.0
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccccc
Q 046446 160 LDMEENAVAPNVITFGTLIHGFIRIN-EPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLN 224 (244)
Q Consensus 160 ~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (244)
+.+.+.|..++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|....
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 34567777776644 44556665554 566788899998888777788888888899988887643
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.52 E-value=14 Score=24.07 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=42.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCC
Q 046446 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ--MDKAHDLFLDMEENAVAP 169 (244)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p 169 (244)
....++.-|...|+.++|...++++..-.. ....+...+..++-+.++ .+.+..++..+...++.+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456788888888999999999998864221 223444555555555332 455677777777665543
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.93 E-value=34 Score=28.23 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=64.9
Q ss_pred CHHHHHHHHHhcccCCccccHHHH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHH
Q 046446 116 RLEIALELFHSLPRGVLVADVVTY----SIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVI 191 (244)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 191 (244)
+.+.|...+....... ..+.... ..+.......+...++...+....... ++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5677777777664322 1122222 222223333443445555555544322 33333444555555778888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhccccccchhhhhhhhh
Q 046446 192 ELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNSLPSFTVHER 234 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (244)
..|..|..... ......-.+.+++.+.|+.++|..+|..+-+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887765322 2344445677777888888888888776654
No 290
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=74.19 E-value=17 Score=27.29 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=49.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhh-hchHHHHHHHHHHHHHcCCCCChhHHH---HHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFE-IHQVERAFKLFDEMQRDGVAADTRTYT---IFIDGLC 77 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~ 77 (244)
++.-|...|+.++|.+.++++..... ....+...+..++-+ ...-+.+..++..+.+.|+-+...... .++..+-
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~ 95 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAE 95 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCh
Confidence 57788999999999999988753211 112233333333332 224567778888888776654333322 2222222
Q ss_pred hC-CcHHHHHHHHHHHH
Q 046446 78 KN-GYIVESVELFRTLR 93 (244)
Q Consensus 78 ~~-~~~~~a~~~~~~~~ 93 (244)
.. =|...|...+.++.
T Consensus 96 Dl~lDiP~a~~~La~~v 112 (339)
T 1ug3_A 96 DMEIDIPHVWLYLAELV 112 (339)
T ss_dssp HHTTTCTTHHHHHHHHH
T ss_pred HhhcCccchHHHHHHHH
Confidence 21 24445555555554
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=73.99 E-value=16 Score=23.86 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=31.6
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhh--chHHHHHHHHHHHHHcCCC
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEI--HQVERAFKLFDEMQRDGVA 63 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~ 63 (244)
+|.-|...|+.++|.+.++++.... -....+...+..++-+. ...+.+..++..+...|+-
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566667777777777777764210 11222333334444432 2245566666666655544
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.17 E-value=16 Score=23.05 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCC
Q 046446 103 AYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQ--MDKAHDLFLDMEENAVA 168 (244)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~ 168 (244)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345677778778888888888888763221 123344444455555432 34566667666665544
No 293
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.72 E-value=8.3 Score=27.43 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=4.8
Q ss_pred HHHHHHHhCCC
Q 046446 17 NLYSEMLSKGI 27 (244)
Q Consensus 17 ~~~~~~~~~~~ 27 (244)
++++.+.+.|.
T Consensus 19 ~~v~~Ll~~g~ 29 (285)
T 1wdy_A 19 DLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 34444444443
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.61 E-value=19 Score=23.84 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCC-ccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc
Q 046446 85 SVELFRTLRILKCE-LDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD 135 (244)
Q Consensus 85 a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (244)
...+|..|...|+- --...|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 55667777766642 2344566666777777777777777777766665554
No 295
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.86 E-value=30 Score=25.73 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHH----HHHHHHHhCCCccHHhHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVE----LFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll 108 (244)
.|.++..=|.+.+++++|++++..-. ..+.+.|....|-+ +++-+.+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555555666666666666654322 22334455444333 455555667777877777777
Q ss_pred HHHHcCCC--------HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH-----------H----HHc
Q 046446 109 DGLCKSGR--------LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD-----------M----EEN 165 (244)
Q Consensus 109 ~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----------~----~~~ 165 (244)
..+..... .++|.+.=...... ..-++.....+...|.+.|++.+|...|-. | .+.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEY-KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 77665331 12222222222111 123667778888888888888888875520 1 111
Q ss_pred ---CCCCcHhHH-HHHHHHHHhcCChhHHHHHHHHHH
Q 046446 166 ---AVAPNVITF-GTLIHGFIRINEPSKVIELLHKMK 198 (244)
Q Consensus 166 ---~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 198 (244)
|.+-+...| ...+-.|...|+...|..+++...
T Consensus 179 ~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 221112222 122333445678888888877664
No 296
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=70.07 E-value=11 Score=23.67 Aligned_cols=46 Identities=9% Similarity=0.020 Sum_probs=21.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh
Q 046446 142 MIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187 (244)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 187 (244)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3333434444445555555555444444444444444444444443
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.17 E-value=25 Score=25.29 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046446 106 CLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLD 161 (244)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (244)
+.+...+..|+.+-+..+++.-... .+...-.+.+...+..|+.+-+.-+++.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 3444455566665444444332211 1110222333444566666655555544
No 298
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=68.95 E-value=11 Score=24.15 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=22.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh
Q 046446 141 IMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEP 187 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 187 (244)
.++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 33444444444445555555555444444444444444444444443
No 299
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.82 E-value=25 Score=24.13 Aligned_cols=155 Identities=11% Similarity=-0.009 Sum_probs=77.8
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCChhH--HHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHh--HHHHHHHHHc
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAADTRT--YTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCK 113 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~ 113 (244)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445677899888888887777766554321 112344445567765 4444445554443221 1233445566
Q ss_pred CCCHHHHHHHHHhcccCCcc---ccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhH---HHHHHHHHHhcCCh
Q 046446 114 SGRLEIALELFHSLPRGVLV---ADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT---FGTLIHGFIRINEP 187 (244)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~ 187 (244)
.|+.+-+..+++.....+.. .+....+.+ ...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 78888777777765422111 111122222 2333455554 3444445565544321 22334444566776
Q ss_pred hHHHHHHHHHHHCCCCCC
Q 046446 188 SKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~ 205 (244)
+-+.. +.+.|..++
T Consensus 164 ~~v~~----Ll~~g~~~~ 177 (241)
T 1k1a_A 164 SMVQL----LLQHGANVN 177 (241)
T ss_dssp HHHHH----HHHTTCCTT
T ss_pred HHHHH----HHHcCCCCC
Confidence 54443 444555443
No 300
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.68 E-value=35 Score=25.67 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHhCCCC---C-ChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHH-
Q 046446 10 KEIEGALNLYSEMLSKGIK---P-DVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVE- 84 (244)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~- 84 (244)
+..++.+.=++.-++.|-- - --.+|.++..=|.+.+++++|++++..-.. .+.+.|....
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchH
Confidence 3344444444444444411 1 123566666667788888888887644221 2223343333
Q ss_pred ---HHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCH--------HHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH
Q 046446 85 ---SVELFRTLRILKCELDIQAYSCLIDGLCKSGRL--------EIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 85 ---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (244)
+.-+++-+.+.+++++......++..+.....- ++|.+.=...- ....-|+.....+...|.+.+++.
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHH
Confidence 333345555667777777777777776655531 12222222211 111224555566777777777777
Q ss_pred HHHHHH
Q 046446 154 KAHDLF 159 (244)
Q Consensus 154 ~a~~~~ 159 (244)
+|...|
T Consensus 154 ~Ae~H~ 159 (336)
T 3lpz_A 154 AAEKHL 159 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776655
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.33 E-value=25 Score=23.80 Aligned_cols=186 Identities=14% Similarity=0.064 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
..+...+-.... .++...-...+..+.+.+.. .+...+..+.. .++..+-...+.++.+.++.+.. ..+..+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHH
Confidence 334444444443 35666666677777776653 33333334443 34666666777777777764333 333333
Q ss_pred HHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHh
Q 046446 93 RILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVI 172 (244)
Q Consensus 93 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 172 (244)
.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..
T Consensus 90 l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 158 (211)
T 3ltm_A 90 LK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGW 158 (211)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHH
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHH
Confidence 32 356666667777777777754 3444444444 356677777777777777654 4444444443 35666
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccc
Q 046446 173 TFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEI 221 (244)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (244)
+-...+.++.+.+. ..+...+..+.+. ++..+-...+.++.+.+.
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 67777777777776 4455566665553 455566666666655443
No 302
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=66.99 E-value=9.9 Score=24.27 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 35 NTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555555555566777777776666666666666666666666643
No 303
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=66.94 E-value=11 Score=23.76 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc
Q 046446 37 LFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY 81 (244)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 81 (244)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334444444445566666666665555555555555566655553
No 304
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=66.32 E-value=8.3 Score=20.51 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 046446 13 EGALNLYSEMLSKGIKPDVVIHNTLFIGL 41 (244)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 41 (244)
++|.+.|.+|++..-.++..+|...|..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444444444432223334444444444
No 305
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=66.00 E-value=42 Score=25.58 Aligned_cols=69 Identities=19% Similarity=0.369 Sum_probs=42.8
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhhh-chHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPD----VVIHNTLFIGLFEI-HQVERAFKLFDEMQRDGVAADTRTYTIFID 74 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 74 (244)
+|.-|...|+.++|.+.++++.. |+ ..++..+..++-+. ..-+.+-.++..+...++-+.......+..
T Consensus 18 ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 18 VVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 67889999999999999999863 32 23334444444332 234667777778877666544444333333
No 306
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.94 E-value=35 Score=24.73 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=72.3
Q ss_pred HHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC--ccccHHHHHHHHHHHHccCC
Q 046446 74 DGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV--LVADVVTYSIMIHGLYNDGQ 151 (244)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~ 151 (244)
....+.|+++++++....-++.. |-|...-..++..+|-.|+++.|.+-++...+.. ..|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34567788888888888777765 6778888888899999999999988888776552 11222334444432
Q ss_pred hHHHHHHHHHHHHcCCCC-----cHhHHHHHHHHHH--hcCChhHHHHHHHHHHHC
Q 046446 152 MDKAHDLFLDMEENAVAP-----NVITFGTLIHGFI--RINEPSKVIELLHKMKEK 200 (244)
Q Consensus 152 ~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 200 (244)
+..=.+....+..| ...-...++.+.. ..|+.++|.++-.++.+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222233333222 2223444555444 458888888888877654
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=65.63 E-value=18 Score=27.16 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Q 046446 69 YTIFIDGLCKNGYIVESVELFRTLR 93 (244)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~~~ 93 (244)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888877764
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=64.88 E-value=16 Score=20.49 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHhCCCCCChhhHHHHHHHHhhhc-hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 22 MLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 22 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444332 23334443332 33445555555555544444444444444444433
No 309
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=63.10 E-value=33 Score=23.43 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=13.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCC
Q 046446 144 HGLYNDGQMDKAHDLFLDMEENAV 167 (244)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~ 167 (244)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 344455666666666666666554
No 310
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=62.70 E-value=42 Score=25.57 Aligned_cols=74 Identities=16% Similarity=0.044 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC--HHHHHHHHHhcccCCccccHHHHHHH
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR--LEIALELFHSLPRGVLVADVVTYSIM 142 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (244)
....++.-|...|+.++|.+.++++.... .........++......++ -+.+-.++..+...++-+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 45678888999999999999999875211 0112233333433333333 24455666666665544333333333
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.25 E-value=31 Score=22.49 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 046446 155 AHDLFLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 206 (244)
+..+|..|..+|+--. ...|......+...|++.+|.++|+.-.+.+-+|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 6666776666655433 334455555666667777777777776666655543
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=60.90 E-value=15 Score=23.24 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHhCCCCCChhhHHHHHHHHhhhc-hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 21 EMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 21 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 466678776654 334555565555 67789999999998877778888777788888777543
No 313
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=60.50 E-value=19 Score=25.55 Aligned_cols=55 Identities=11% Similarity=0.005 Sum_probs=34.5
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCC-------ChhhHHHHHHHHh--hhchHHHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKP-------DVVIHNTLFIGLF--EIHQVERAFKLFDEM 57 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~--~~~~~~~a~~~~~~m 57 (244)
+...++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 455677889888888888777665332 2333455555553 347777666666653
No 314
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=60.46 E-value=48 Score=24.36 Aligned_cols=108 Identities=8% Similarity=-0.018 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCccHHh--HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 87 ELFRTLRILKCELDIQA--YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
.+.+.+.+.|..++... -.+.+...+..|..+.+..+++.-...--..|..-.+.|. ..++.|+.+ +.+.+.+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~ 294 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL-LAVELKLKK----IAELLCK 294 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHH
Confidence 34444556665443221 1223445566777776666554321100011222222332 234556654 3444556
Q ss_pred cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 046446 165 NAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206 (244)
Q Consensus 165 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 206 (244)
.|..++..+ .+...++.|+.+ +.+.+.+.|-.||.
T Consensus 295 ~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 295 RGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp TSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred CCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 777776654 233334556654 44455666655553
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.46 E-value=16 Score=24.00 Aligned_cols=69 Identities=9% Similarity=0.172 Sum_probs=43.3
Q ss_pred HHHHHHHH-HHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh--CCCccHHhHHHHHHHHHcCCCH
Q 046446 48 ERAFKLFD-EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL--KCELDIQAYSCLIDGLCKSGRL 117 (244)
Q Consensus 48 ~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~ 117 (244)
+.+++-+. .+.+.|..++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444343 345567776543 335566666666777888888888776 5556666665666777777753
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=59.36 E-value=39 Score=23.56 Aligned_cols=55 Identities=7% Similarity=-0.136 Sum_probs=33.1
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHhhh---chHHHHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDV-------VIHNTLFIGLFEI---HQVERAFKLFDEMQ 58 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~---~~~~~a~~~~~~m~ 58 (244)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++ .. |+.+-+..+++.-.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCC
Confidence 45567788888888888877776655443 2233444333 33 66666655555433
No 317
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=58.26 E-value=27 Score=20.79 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH-----HHCCCCCChhhHHHHH
Q 046446 154 KAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKM-----KEKNVMPDASIVSIVV 213 (244)
Q Consensus 154 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~ 213 (244)
.+.++.+++...|+.|+..+...++..|...+- + +.++..+. ...|..|+..+.+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 466677777777888888888888887776653 2 33333322 2346666666655443
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.03 E-value=38 Score=22.43 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=65.8
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHh--HHHHHHHHHcCCCHH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQA--YSCLIDGLCKSGRLE 118 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~ 118 (244)
.+..|+.+.+..++..-...--..|..-++.| ...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 34567777766665422100011122222233 3334455644 3444444454433221 112334445567777
Q ss_pred HHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCC---cHhHHHHHHHHHHhcCC-hhHHHHH
Q 046446 119 IALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENA-VAP---NVITFGTLIHGFIRINE-PSKVIEL 193 (244)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~-~~~a~~~ 193 (244)
-+..+++.....--..+..-.+. +...+..|+.+-+..++ +.| ..+ +..-.+.+..++ ..++ ...-.++
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~ 160 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDI 160 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHH
Confidence 66666644321100111111122 23344556665444444 333 222 222333443333 3343 3333566
Q ss_pred HHHHHHCCCCCCh
Q 046446 194 LHKMKEKNVMPDA 206 (244)
Q Consensus 194 ~~~~~~~~~~~~~ 206 (244)
.+.+.+.|..|+.
T Consensus 161 v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 161 VKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHTTCCTTC
T ss_pred HHHHHHCCCCCCc
Confidence 6666777765553
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=57.86 E-value=42 Score=22.86 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=83.2
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHh
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT---RTYTIFIDGLCK 78 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~ 78 (244)
.+...++.|+.+....+++.-...-..++..-++.+. ..+..|+.+-+ +.+.+.|..++. .-++.+ ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHH-HHHHH
Confidence 3566778899888888776533211122333333333 34456665544 344455655443 222233 33344
Q ss_pred CCcHHHHHHHHHHHHHhCCCccH---HhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHH
Q 046446 79 NGYIVESVELFRTLRILKCELDI---QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKA 155 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (244)
.|+.+ +++.+.+.|..++. .-. +.+...+..|+.+-+..+++.-.... ..+.... +.+...+..|+.+-+
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~-t~L~~A~~~~~~~~v 155 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDA-TAMHRAAAKGNLKMV 155 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC-CHHHHHHHHTCHHHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCC-cHHHHHHHcCCHHHH
Confidence 56654 44444445543322 122 23444556677776655554322111 0111111 223333445665544
Q ss_pred HHHHHHHHHcCCCCcHhH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 046446 156 HDLFLDMEENAVAPNVIT--FGTLIHGFIRINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
+.+.+.|..++... -.+.+...+..|..+- .+.+.+.|..|+
T Consensus 156 ----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~ 199 (231)
T 3aji_A 156 ----HILLFYKASTNIQDTEGNTPLHLACDEERVEE----AKFLVTQGASIY 199 (231)
T ss_dssp ----HHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCSC
T ss_pred ----HHHHhcCCCccccCCCCCCHHHHHHHCCCHHH----HHHHHHCCCCCC
Confidence 33444555444221 1122334455666543 344445565554
No 320
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=57.69 E-value=43 Score=22.96 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=25.8
Q ss_pred HHHHHHhh---hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 36 TLFIGLFE---IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 36 ~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
.+|+++.+ -.+.+.|+-++.+|.+.|..|.-..-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34444443 3567777777777777776655444444444444433
No 321
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.49 E-value=18 Score=23.29 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 20 SEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 20 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4566678777654 334445555555 678999999999888777888877778888887754
No 322
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=56.57 E-value=41 Score=22.40 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=11.0
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCc
Q 046446 76 LCKNGYIVESVELFRTLRILKCEL 99 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~ 99 (244)
.+..|+.+.-.++.+.+.+.|..+
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCC
Confidence 334444444444555555555433
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=56.54 E-value=17 Score=23.46 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhhhc-hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHH
Q 046446 20 SEMLSKGIKPDVVIHNTLFIGLFEIH-QVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIV 83 (244)
Q Consensus 20 ~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 83 (244)
+.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4466778776654 334555666665 67789999999998877778888778888888887643
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=56.50 E-value=46 Score=22.90 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhh---chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc-----HHHHHHHHHHHHHhCC
Q 046446 33 IHNTLFIGLFEI---HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY-----IVESVELFRTLRILKC 97 (244)
Q Consensus 33 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 97 (244)
.+..+|+++.++ .+.+.|+-++.+|.+.| .|.-..-..++.+.-..|. ...|...++.....|.
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344455555443 67888888888888888 5544444444555544443 2334445555555565
No 325
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.46 E-value=77 Score=25.55 Aligned_cols=65 Identities=8% Similarity=0.016 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHc-CCCCCh--hHH-HHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 31 VVIHNTLFIGLFEIHQVERAFKLFDEMQRD-GVAADT--RTY-TIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
...+|.+++.|...+.++.|..+..+..-- ...++. ..| ..+.+.+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456788889999999999999988876411 001111 122 23456666788999998888887654
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.39 E-value=43 Score=22.30 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=51.4
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHh-
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDV-VIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT---YTIFIDGLCK- 78 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~- 78 (244)
...++.|+++....++.. ++.... ..-.+.+...+..|+.+.-.++.+-+.+.|..++... .+.|..++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 345678888886666543 221111 1112344555566777766777777888888776532 2233333222
Q ss_pred CCcHHHHHHHHHHHHHhCCCcc
Q 046446 79 NGYIVESVELFRTLRILKCELD 100 (244)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~ 100 (244)
..+.....++.+.+.+.|..++
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSS
T ss_pred CcchhhHHHHHHHHHHCCCCCC
Confidence 2344445666777777765544
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.99 E-value=43 Score=22.16 Aligned_cols=53 Identities=6% Similarity=0.091 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 046446 155 AHDLFLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDAS 207 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 207 (244)
...+|..|..+|+--. ...|......+...|++.+|.++|..-.+.+-.|...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5566777766665433 3344555556666777777777777777666666543
No 328
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.67 E-value=98 Score=25.88 Aligned_cols=77 Identities=9% Similarity=-0.046 Sum_probs=35.6
Q ss_pred hhhhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHh---C
Q 046446 4 NGYCKNKEIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGV-AADTRTYTIFIDGLCK---N 79 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~---~ 79 (244)
..+.-.|+++.|++.+-+. ...+..++...+..+.-.+- . +.+..... .| ..-+..||..|.+ .
T Consensus 302 ~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~-~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKR-DIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcc-cccHHHHHHHHHHHhhc
Confidence 3455567777777765433 13344444444443332221 0 11111000 11 2225667777764 5
Q ss_pred CcHHHHHHHHHHH
Q 046446 80 GYIVESVELFRTL 92 (244)
Q Consensus 80 ~~~~~a~~~~~~~ 92 (244)
.++..|.++|-.+
T Consensus 370 td~~~Al~Y~~li 382 (661)
T 2qx5_A 370 SDPRVAVEYLVLI 382 (661)
T ss_dssp TCHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHH
Confidence 6778888777666
No 329
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=53.25 E-value=17 Score=22.71 Aligned_cols=53 Identities=11% Similarity=-0.045 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVEL 88 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 88 (244)
.|.-.|...+..++.+-|.++++-..+.| +...|.+++-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 44455555666667777777766666554 556666666666666666665554
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.86 E-value=42 Score=21.43 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC
Q 046446 57 MQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSG 115 (244)
Q Consensus 57 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 115 (244)
+.+.|..++..=. .++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444554433222 233333333444455555555555443334444333444444443
No 331
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.73 E-value=50 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=15.0
Q ss_pred hhhhcCChhHHHHHHHHHHhCCC
Q 046446 5 GYCKNKEIEGALNLYSEMLSKGI 27 (244)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~ 27 (244)
+|-+.+++..|+..++.+....+
T Consensus 71 Cy~klKdYkkA~~~le~il~~kv 93 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKV 93 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34556777777777777775433
No 332
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.68 E-value=90 Score=25.18 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccH------HhHH-HHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 66 TRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI------QAYS-CLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 66 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
...+|.+++.|...+.++.|..+..+.. .+.+. ..|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4568889999999999999999999774 22111 1222 2345667788999999998886654
No 333
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.22 E-value=69 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=11.8
Q ss_pred hhhhhhcCChhHHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEML 23 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~ 23 (244)
+.-|...|+.++|.+.++++.
T Consensus 173 L~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 173 LKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHcC
Confidence 444555556666666555554
No 334
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.93 E-value=59 Score=22.80 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 046446 153 DKAHDLFLDMEENAVAPN-VITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDA 206 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 206 (244)
+....+|..|...|+--. ...|......+...|++.+|..+|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 456677777777766433 344555666667778888888888877776666643
No 335
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.85 E-value=85 Score=24.64 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=16.6
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQR 59 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 59 (244)
.+......++.. ..|+...++.+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344455555444 34677777777766654
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.28 E-value=46 Score=21.42 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=30.8
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC
Q 046446 56 EMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR 116 (244)
Q Consensus 56 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 116 (244)
.+.+.|..++..= ..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455565544322 23444555555566677777777666544555554445555555543
No 337
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=51.22 E-value=58 Score=22.57 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHhhh---chHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCc-----HHHHHHHHHHHHHhCC
Q 046446 31 VVIHNTLFIGLFEI---HQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGY-----IVESVELFRTLRILKC 97 (244)
Q Consensus 31 ~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 97 (244)
...+..+|+++.++ .+.+.|+-++.+|.+.|..|.-..-..++.+.-..|. ...|...++.....|.
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34455566666543 6788888888888887776655555555555544443 2344555555555564
No 338
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.28 E-value=1.1e+02 Score=25.37 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=10.9
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 046446 145 GLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~ 164 (244)
.+...|....|...+..+..
T Consensus 390 ~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 390 ELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCChhhHHHHHHHHHh
Confidence 34455666666655555443
No 339
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.61 E-value=64 Score=22.60 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHhcccCCcccc-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcH
Q 046446 118 EIALELFHSLPRGVLVAD-VVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV 171 (244)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 171 (244)
+.+..+|..|...|+-.. ..-|......+-..|++.+|.++|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466788888887765443 567788888899999999999999999888877743
No 340
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=49.41 E-value=78 Score=23.61 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGV 131 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 131 (244)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 466777778888888888888888887778889999999887765
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=49.39 E-value=59 Score=22.07 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=66.3
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccH---HhHHHHHHHHHcC
Q 046446 38 FIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDI---QAYSCLIDGLCKS 114 (244)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~ 114 (244)
+...+..|+.+.+..++..-...-..++..-.+.|. ..+..|+.+- ++.+.+.|..++. .-++. +...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEI----VEFLLQLGVPVNDKDDAGWSP-LHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCH-HHHHHHc
Confidence 555667888888887776533221122333333333 3345566544 4444445544332 22233 3444556
Q ss_pred CCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhH--HHHHHHHHHhcCChhHHHH
Q 046446 115 GRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVIT--FGTLIHGFIRINEPSKVIE 192 (244)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~ 192 (244)
|+.+-+..+++.-.... .++..-.+. +...+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+-+..
T Consensus 84 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVN-AVNQNGCTP-LHYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp TCHHHHHHHHHTTCCTT-CCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHcCCCCC-CCCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 77765555554322111 112222222 33344556665443 3445555544321 1123344445676654443
Q ss_pred HH
Q 046446 193 LL 194 (244)
Q Consensus 193 ~~ 194 (244)
++
T Consensus 158 Ll 159 (231)
T 3aji_A 158 LL 159 (231)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 342
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.29 E-value=54 Score=21.62 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCC--cHhHHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 046446 139 YSIMIHGLYNDGQMDKAHDLFLDMEENAVAP--NVITFGTLIH-G-----FIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 199 (244)
|..-+..+- .|++-+|.++++..-.....+ ....|.-||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444444 489999999999888765555 4556666666 2 2357899999999988765
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.75 E-value=1.4e+02 Score=26.22 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=50.6
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-----------------
Q 046446 107 LIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAP----------------- 169 (244)
Q Consensus 107 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p----------------- 169 (244)
++..+...|..+-|.++...+.. +...--.+..+|...|++++|...|++.-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44555566666666554444443 222224566777778888888888865421 1111
Q ss_pred ------cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046446 170 ------NVITFGTLIHGFIRINEPSKVIELLHKMKEK 200 (244)
Q Consensus 170 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (244)
...-|..++..+-+.+-++.+.++.+...+.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0123566666777777777777776666653
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.75 E-value=57 Score=21.49 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCccc--cHHHHHHHHH-H-----HHccCChHHHHHHHHHHHH
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPRGVLVA--DVVTYSIMIH-G-----LYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 164 (244)
|..-+..+.. |++-+|.++|+..=...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444 99999999999876554344 5667777777 2 3457999999999988764
No 345
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.64 E-value=66 Score=22.13 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=37.8
Q ss_pred HHHHHHH---hCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC-----HHHHHHHHHhcccCCc
Q 046446 71 IFIDGLC---KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-----LEIALELFHSLPRGVL 132 (244)
Q Consensus 71 ~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 132 (244)
.+|+++. +..|++.|+-.+.+|.+.| .|.-..-..++-+.-.-|. +..|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3455554 4578888888888888888 6666666666666666554 2334444444444453
No 346
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=47.58 E-value=96 Score=23.99 Aligned_cols=201 Identities=12% Similarity=0.056 Sum_probs=101.7
Q ss_pred hhhcC--ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchH------HHHHHHHH----HH-----HHcCCCCCh--
Q 046446 6 YCKNK--EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQV------ERAFKLFD----EM-----QRDGVAADT-- 66 (244)
Q Consensus 6 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~------~~a~~~~~----~m-----~~~~~~~~~-- 66 (244)
+++.| .+..++++...+.. ..+...|..++..+...... .+....|+ .+ .+.|..++.
T Consensus 118 La~ag~~~~~~~l~l~~yL~~---E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~~~~~ 194 (419)
T 3rjo_A 118 LVSIGKLSIEKALDLSLYLKH---ETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSV 194 (419)
T ss_dssp HHHHTSSCHHHHHHHHGGGGG---CCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSCCSCH
T ss_pred HHHcCCCCHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCCCchH
Confidence 44444 34556666655554 35666777766555322110 11222222 11 233555442
Q ss_pred ---hHHHHHHHHHHhCCc---HHHHHHHHHHHHHhC----CCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccH
Q 046446 67 ---RTYTIFIDGLCKNGY---IVESVELFRTLRILK----CELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADV 136 (244)
Q Consensus 67 ---~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (244)
..-..++...|..|+ .+.|.+.|+.....+ ++|+.... +. +.. .+..++-..+++..... .+.
T Consensus 195 ~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy-~~~-~~~~~~~~~l~~~y~~s---~~~ 267 (419)
T 3rjo_A 195 SERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VF-AVG-AQSTEGWDFLYSKYQFS---LSS 267 (419)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HH-HHH-TTSHHHHHHHHHHHHHC---CCH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EE-eee-eCCHHHHHHHHHHHhcC---CCH
Confidence 223345666777776 456777887766542 45554332 11 111 12233344555555554 355
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CChhHHHHHHHH----HHHCCCCCChhhHHH
Q 046446 137 VTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI-NEPSKVIELLHK----MKEKNVMPDASIVSI 211 (244)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~----~~~~~~~~~~~~~~~ 211 (244)
.--..++.+++...+.+...++++......+....... .++.+.... -..+.+.+.+.+ +.+. +.++...+..
T Consensus 268 ~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~-~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~ 345 (419)
T 3rjo_A 268 TEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFP-QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAH 345 (419)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHH-HHHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHH
Confidence 56778889999999999999999887765432222322 233343332 123445554432 3322 2233455566
Q ss_pred HHHHHHh
Q 046446 212 VVDLLAK 218 (244)
Q Consensus 212 l~~~~~~ 218 (244)
++.....
T Consensus 346 ~i~~~~~ 352 (419)
T 3rjo_A 346 MVMGTTN 352 (419)
T ss_dssp HHHHTTT
T ss_pred HHHHHhh
Confidence 6655443
No 347
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=46.32 E-value=66 Score=21.74 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=26.1
Q ss_pred CCCCChhhH--HHHHHHHHhccccccchhhhhhhhhhh
Q 046446 201 NVMPDASIV--SIVVDLLAKNEISLNSLPSFTVHERQE 236 (244)
Q Consensus 201 ~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (244)
+..|....| ..-...|...|..++....|...++.+
T Consensus 201 n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 201 EHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcC
Confidence 455665544 345567788999999999999887764
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.89 E-value=1.6e+02 Score=25.94 Aligned_cols=88 Identities=15% Similarity=0.023 Sum_probs=54.6
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcc-------c----------
Q 046446 72 FIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV-------A---------- 134 (244)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------~---------- 134 (244)
++..+...|..+-+.++.. .++.+...--.+..+|...|++++|..+|++.-.. +. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~-----~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g-l~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG-----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG-----GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT-TCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh-----hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cccCcccccchhhhhhccCc
Confidence 4455556666665544332 23344444345778889999999999999876421 10 0
Q ss_pred ------cHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 046446 135 ------DVVTYSIMIHGLYNDGQMDKAHDLFLDMEEN 165 (244)
Q Consensus 135 ------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (244)
...-|..++..+-+.+-++.+.++-+...+.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124566677777777788777777776653
No 349
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.31 E-value=81 Score=22.54 Aligned_cols=169 Identities=11% Similarity=-0.039 Sum_probs=79.4
Q ss_pred hcCChhHHHHHHHHHHhCCCC-CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHH
Q 046446 8 KNKEIEGALNLYSEMLSKGIK-PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESV 86 (244)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 86 (244)
+..+..+..+++.. .++. .|..-++. +...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+.
T Consensus 8 ~~~~~~~v~~lL~~---~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 8 NTWKSKQLKSFLSS---KDTFKADVHGHSA-SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGCCHHHHHHHHHS---TTTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred HhcCHHHHHHHHHh---CCCCccCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 34455555555532 2221 22222333 34445667776655444 4454444332233445556667766544
Q ss_pred HHHHHHHHhCCCccH---HhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc---HHHHHHHHHHHHccCChHHHHHHHH
Q 046446 87 ELFRTLRILKCELDI---QAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD---VVTYSIMIHGLYNDGQMDKAHDLFL 160 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~ 160 (244)
.+ .+.|..++. .-++ .+...+..|+.+-+..+++. |..++ ..-+.+.+...+..|+.+-+ +
T Consensus 80 ~L----l~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~ 146 (285)
T 3kea_A 80 IL----LFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----S 146 (285)
T ss_dssp HH----HHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----H
T ss_pred HH----HHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----H
Confidence 44 444544332 2223 34445566887766666554 22222 11222344445566766544 3
Q ss_pred HHHHcCCCCcHh-HHHHHHHHHHhcCChhHHHHHHHHH
Q 046446 161 DMEENAVAPNVI-TFGTLIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 161 ~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (244)
.+.+.|..+... .-.+.+...+..|..+-+..+++.-
T Consensus 147 ~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 147 YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 344444433211 2233344445667777666555543
No 350
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.18 E-value=69 Score=21.69 Aligned_cols=45 Identities=13% Similarity=-0.002 Sum_probs=19.6
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCChhH--HHHHHHHHHhCCcHHHHHHHH
Q 046446 41 LFEIHQVERAFKLFDEMQRDGVAADTRT--YTIFIDGLCKNGYIVESVELF 89 (244)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~ 89 (244)
.++.|+.+.+..+ .+.|..++... -.+.+...+..|+.+-+..++
T Consensus 16 A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 16 ATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 3455665554433 34444433211 112344455566654443333
No 351
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=44.71 E-value=1.3e+02 Score=24.63 Aligned_cols=54 Identities=6% Similarity=0.000 Sum_probs=25.5
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhccccccc
Q 046446 170 NVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEISLNS 225 (244)
Q Consensus 170 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (244)
+..--..++..|.+.|-.+.|.++++.+-.+-+. +...+ .-+..|+++|+++..
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 4556778899999999999999999988766443 34455 555677888877643
No 352
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.74 E-value=1.1e+02 Score=23.37 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=10.4
Q ss_pred hhhhhhcCChhHHHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEML 23 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~ 23 (244)
+.-|...|+.++|.+.++++.
T Consensus 224 L~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 224 LKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHhccCCCHHHHHHHHHHcc
Confidence 344444555555555555443
No 353
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.58 E-value=98 Score=22.96 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=38.2
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVI--HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNG 80 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 80 (244)
+...+..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.. +.+.|..++...-.+.+...+..|
T Consensus 24 L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCCCHHHHHHHcC
Confidence 44556667765555544 4444443221 1123333445566544333 333343333311122333344556
Q ss_pred cHHHHHHHHHHHHHhC
Q 046446 81 YIVESVELFRTLRILK 96 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~ 96 (244)
+.+-+..+++.....|
T Consensus 96 ~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 96 KTDLVVALVEGAKERG 111 (364)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccccC
Confidence 6665555555544333
No 354
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=42.75 E-value=1.7e+02 Score=25.53 Aligned_cols=158 Identities=14% Similarity=0.045 Sum_probs=85.5
Q ss_pred HHHHHHhhhch---HHHHHHHHHHHHHc----CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 36 TLFIGLFEIHQ---VERAFKLFDEMQRD----GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 36 ~li~~~~~~~~---~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
.++...|..|. .+.|.+.|+..... .++||... .+...-.+.|..++-..+++++.... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 35555565554 46777888777653 24555432 23333345566666666777776543 344456688
Q ss_pred HHHHcCCCHHHHHHHHHhcccCC-ccccHHHHHHHHHHHHc-cCChHHHHHHHHHHHH---cCCCCcHhHHHHHHHHHHh
Q 046446 109 DGLCKSGRLEIALELFHSLPRGV-LVADVVTYSIMIHGLYN-DGQMDKAHDLFLDMEE---NAVAPNVITFGTLIHGFIR 183 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~ 183 (244)
.+++...+.+...++++...... +.+ ...... +.+... ....+.|++.+.+=.+ .........+..++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~~-~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRK-QDATST-INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHHH-HHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 88888888888888888876543 322 222222 333332 2223445555443111 1122344457777777665
Q ss_pred cCChhHHHHHHHHHHHC
Q 046446 184 INEPSKVIELLHKMKEK 200 (244)
Q Consensus 184 ~g~~~~a~~~~~~~~~~ 200 (244)
.-.-++-.+-++...+.
T Consensus 844 ~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TCCSHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHhh
Confidence 54444444444555443
No 355
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.17 E-value=66 Score=26.23 Aligned_cols=89 Identities=9% Similarity=-0.034 Sum_probs=45.5
Q ss_pred ChhhHHHHHHHHhh--hchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHH
Q 046446 30 DVVIHNTLFIGLFE--IHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107 (244)
Q Consensus 30 ~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (244)
+...|..-|..+.. ..+.+......+.+..+-.--+..-..-++..|.+.|-.+.|.++++.+-..-. -+...+ ..
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eA 555 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ES 555 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HH
Confidence 44566666665553 344556666677776662223455677889999999999999999999876543 344455 56
Q ss_pred HHHHHcCCCHHHH
Q 046446 108 IDGLCKSGRLEIA 120 (244)
Q Consensus 108 l~~~~~~~~~~~a 120 (244)
+..|+++|+++.+
T Consensus 556 L~~f~rA~~~~~V 568 (570)
T 3f3f_C 556 IANFSRAGKYELV 568 (570)
T ss_dssp -------------
T ss_pred HHHHHHcCChhhc
Confidence 6688899988765
No 356
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=42.15 E-value=72 Score=21.03 Aligned_cols=22 Identities=9% Similarity=0.336 Sum_probs=13.9
Q ss_pred hhhhhhhcCChhHHHHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEML 23 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~ 23 (244)
+|.-|...|+.++|...++++.
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHhC
Confidence 4555666666666666666654
No 357
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=41.66 E-value=71 Score=21.06 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 104 YSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 104 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
...++.-|...|+.++|...++++...
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 466788888889999999999887744
No 358
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=41.43 E-value=55 Score=20.80 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=8.1
Q ss_pred HHHHcCCCHHHHHHHHH
Q 046446 109 DGLCKSGRLEIALELFH 125 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~ 125 (244)
...+..|+.+-+..+++
T Consensus 80 ~~A~~~~~~~~v~~Ll~ 96 (165)
T 3twr_A 80 HNACSYGHYEVAELLVK 96 (165)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHh
Confidence 33444566554444443
No 359
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.83 E-value=1.3e+02 Score=23.60 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHc--------CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 47 VERAFKLFDEMQRD--------GVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 47 ~~~a~~~~~~m~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
.++...+++..... ++..+......+... -.|+...+..+++.+...
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 34555555555442 334556666666655 457888888888777543
No 360
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.75 E-value=59 Score=19.35 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 046446 50 AFKLFDEMQRDGVAADTRTYTIFIDGLCKN 79 (244)
Q Consensus 50 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 79 (244)
+..+.++...-|+.|+..+..-++..|..-
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 344444555555555555555555555443
No 361
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=39.72 E-value=1e+02 Score=23.09 Aligned_cols=79 Identities=9% Similarity=0.140 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc-HHh--HHHHHHH----HHcCCCHHHHHHHH
Q 046446 52 KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELD-IQA--YSCLIDG----LCKSGRLEIALELF 124 (244)
Q Consensus 52 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~--~~~ll~~----~~~~~~~~~a~~~~ 124 (244)
++++.+.+.|+.|...++.-++..+++.=.++.+..+++.+...|.... ... ..+++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4566777889998888999999999998899999999999988764332 222 2233322 23457899999999
Q ss_pred HhcccC
Q 046446 125 HSLPRG 130 (244)
Q Consensus 125 ~~~~~~ 130 (244)
+.+...
T Consensus 310 ~~~p~~ 315 (345)
T 2qfz_A 310 QNLPTA 315 (345)
T ss_dssp TSCSCT
T ss_pred HcCCCc
Confidence 887654
No 362
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=38.79 E-value=44 Score=24.99 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHH---HcCCCHHHHHHHHHhcc
Q 046446 52 KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGL---CKSGRLEIALELFHSLP 128 (244)
Q Consensus 52 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~ 128 (244)
++++.+.+.|+.|...++.-++..+++.=.++.+..+++.+...|...-..+.-+++..+ ....++++...+++.+.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 466777888999999999999999998888999999999998877321111122222221 12346888888887766
Q ss_pred c
Q 046446 129 R 129 (244)
Q Consensus 129 ~ 129 (244)
.
T Consensus 294 ~ 294 (334)
T 2qq8_A 294 E 294 (334)
T ss_dssp T
T ss_pred C
Confidence 4
No 363
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.77 E-value=45 Score=17.65 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=14.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC
Q 046446 183 RINEPSKVIELLHKMKEKNVMPD 205 (244)
Q Consensus 183 ~~g~~~~a~~~~~~~~~~~~~~~ 205 (244)
..|+.+.|...+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35667777777766665555554
No 364
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.34 E-value=95 Score=21.31 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHHH---hCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC-----HHHHHHHHHhcccCCc
Q 046446 71 IFIDGLC---KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-----LEIALELFHSLPRGVL 132 (244)
Q Consensus 71 ~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 132 (244)
.+|+++. +..|++.|+-.+.+|.+.|-.|.-..-..++-+.-..|. +..|...++.....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 4455554 457899999999999998866666665666666655554 3455555666666663
No 365
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=37.59 E-value=91 Score=20.90 Aligned_cols=6 Identities=0% Similarity=0.152 Sum_probs=2.6
Q ss_pred hhchHH
Q 046446 43 EIHQVE 48 (244)
Q Consensus 43 ~~~~~~ 48 (244)
..|+.+
T Consensus 34 ~~g~~~ 39 (223)
T 2f8y_A 34 RYSRSD 39 (223)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 444443
No 366
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=37.52 E-value=1.2e+02 Score=22.23 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHH----HHcCCCHHHHHHHHH-h
Q 046446 52 KLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDG----LCKSGRLEIALELFH-S 126 (244)
Q Consensus 52 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~-~ 126 (244)
++++.+.+.|+.|...++.-++..+++.=..+.+.++++.+...|...-..+.-+++.. ... .++++...++. .
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~-~d~~~~l~~l~~~ 253 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQ-ADFEGALKFFRVQ 253 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHT-CCHHHHHHHHHTH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHh
Confidence 45667788899999999999999999888899999999999988743212222222221 223 47889998886 4
Q ss_pred ccc
Q 046446 127 LPR 129 (244)
Q Consensus 127 ~~~ 129 (244)
+..
T Consensus 254 lp~ 256 (310)
T 3hzj_A 254 LPK 256 (310)
T ss_dssp HHH
T ss_pred Ccc
Confidence 443
No 367
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.11 E-value=1.1e+02 Score=22.58 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=8.4
Q ss_pred hhchHHHHHHHHHHHHHcCC
Q 046446 43 EIHQVERAFKLFDEMQRDGV 62 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~ 62 (244)
..|+.+-+..+++.-...|.
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHhccccCC
Confidence 34444444444444333333
No 368
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=36.72 E-value=61 Score=22.09 Aligned_cols=208 Identities=10% Similarity=0.014 Sum_probs=91.7
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChh---hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhH--HHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVV---IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRT--YTIFIDGL 76 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~ 76 (244)
.+...+..|+.+-+ +.+.+.|..++.. -++. +...+..|+.+-+. .+.+.|..++... -.+.+...
T Consensus 14 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 14 PLHAAAEAGHVDIC----HMLVQAGANIDTCSEDQRTP-LMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHH----HHHTTTCCCCCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHHHH----HHHHHcCCCcCccCCCCCCH-HHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHH
Confidence 35566777776544 4444555544432 2223 33444566665443 3445555443211 11233334
Q ss_pred HhCCcHHHHHHHHHHHHHhC-CCc---cHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCCh
Q 046446 77 CKNGYIVESVELFRTLRILK-CEL---DIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQM 152 (244)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 152 (244)
+..|+.+-+. .+.+.+ ..+ +..-.+ .+...+..|+.+-+..+++.-.... ..+..-.+ .+...+..|+.
T Consensus 85 ~~~~~~~~~~----~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t-~L~~A~~~~~~ 157 (237)
T 3b7b_A 85 AKKGHYEVVQ----YLLSNGQMDVNCQDDGGWT-PMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENI-CLHWAAFSGCV 157 (237)
T ss_dssp HHTTCHHHHH----HHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC-HHHHHHHHCCH
T ss_pred HHcCCHHHHH----HHHhCCCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCC-HHHHHHHCCCH
Confidence 4556655443 344433 221 111222 3344455677665555554322111 01111111 22333445655
Q ss_pred HHHHHHHHHHHHcCCCCcHhH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhccccccchhh
Q 046446 153 DKAHDLFLDMEENAVAPNVIT--FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASI--VSIVVDLLAKNEISLNSLPS 228 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~ 228 (244)
+ +++.+.+.|..++... -.+.+...++.|+.+-+ +.+.+.|..++... -..-+......|+.+.+++.
T Consensus 158 ~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l 229 (237)
T 3b7b_A 158 D----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229 (237)
T ss_dssp H----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4 4444555565554321 11233444556666544 33445555443221 11233444556666666666
Q ss_pred hhhhh
Q 046446 229 FTVHE 233 (244)
Q Consensus 229 ~~~~~ 233 (244)
.+.+.
T Consensus 230 ~~~l~ 234 (237)
T 3b7b_A 230 SKALQ 234 (237)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 65554
No 369
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=35.34 E-value=65 Score=20.10 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=15.3
Q ss_pred HcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH
Q 046446 112 CKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (244)
+..++.+-|+++++-+.+.| +...|.+++-.|-..=+++
T Consensus 43 a~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpD 81 (125)
T 3qil_A 43 SESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPD 81 (125)
T ss_dssp TSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTT
T ss_pred HHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChH
Confidence 33344444444444444332 3333444444443333333
No 370
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.14 E-value=80 Score=19.52 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 046446 53 LFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRIL 95 (244)
Q Consensus 53 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 95 (244)
+|+.+....+.|+...--.-+..+...++++.|.++...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3445555555544433333344455678999999988887753
No 371
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=34.84 E-value=1.6e+02 Score=22.78 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=82.9
Q ss_pred HHHHHHHhhhch---HHHHHHHHHHHHHcC----CCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHH
Q 046446 35 NTLFIGLFEIHQ---VERAFKLFDEMQRDG----VAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCL 107 (244)
Q Consensus 35 ~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (244)
..++...|..|+ .+.|.+.|+.....+ ++||.... +...-.+ ..++-..+++..... .+..--..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 345566666654 578888888877643 55554332 1111122 234444555555543 355556788
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHc-cCChHHHHHHHHH----HHHcCCCCcHhHHHHHHHHHH
Q 046446 108 IDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYN-DGQMDKAHDLFLD----MEENAVAPNVITFGTLIHGFI 182 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~----~~~~~~~p~~~~~~~l~~~~~ 182 (244)
+.+++...+.+...++++......+......... +.+... ....+.|++.+.+ +.+. ..++...+..++....
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~-~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~~ 351 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQI-LTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTT 351 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHH-HHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHH-HHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHHh
Confidence 8999888999888888887765442122222232 333333 2334556666543 2221 2234456777776655
Q ss_pred hcCChhHHHHHHHHHHH
Q 046446 183 RINEPSKVIELLHKMKE 199 (244)
Q Consensus 183 ~~g~~~~a~~~~~~~~~ 199 (244)
..-.-++-.+-++...+
T Consensus 352 ~~~~t~~~l~e~~~Ff~ 368 (419)
T 3rjo_A 352 NQFSTRTRLEEVKGFFS 368 (419)
T ss_dssp TTCCSHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH
Confidence 43333333333333333
No 372
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.99 E-value=1e+02 Score=20.49 Aligned_cols=52 Identities=10% Similarity=-0.077 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccc
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (244)
.+.+..+++.+.+.|+.-|...-...+....+.|.+ ....+-.++.+.|+.+
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH
Confidence 345666777777777765555555666666554432 2345666677777643
No 373
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.82 E-value=98 Score=20.13 Aligned_cols=50 Identities=8% Similarity=-0.064 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcc
Q 046446 82 IVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLV 133 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (244)
.+.+..+++.+.+.|+.-|...-...+....+.| .....+-.++.+.|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3445555666666665444444444444444433 1233455555555543
No 374
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.51 E-value=1.8e+02 Score=23.17 Aligned_cols=22 Identities=23% Similarity=0.236 Sum_probs=9.8
Q ss_pred hHHHHHHHHhhhchHHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLF 54 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~ 54 (244)
.|..-...+...|++++|.++-
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~a 384 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVA 384 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3433344444444444444443
No 375
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=32.90 E-value=86 Score=19.18 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhhhchHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhCCcHHHHHHHH
Q 046446 11 EIEGALNLYSEMLSKGIKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQR-DGVAADTRTYTIFIDGLCKNGYIVESVELF 89 (244)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 89 (244)
.+.+|+.-+++.... ++|......++..+-. -++.++++.+...+ .|+ ++.++...++...+.|-.+.. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 456677777766554 4555555556555433 35666666665544 355 456666677776666655444 444
Q ss_pred HHHHH
Q 046446 90 RTLRI 94 (244)
Q Consensus 90 ~~~~~ 94 (244)
..|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 376
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.88 E-value=33 Score=21.58 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=7.8
Q ss_pred hhhcCChhHHHHHHHH
Q 046446 6 YCKNKEIEGALNLYSE 21 (244)
Q Consensus 6 ~~~~~~~~~a~~~~~~ 21 (244)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555554444
No 377
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.62 E-value=43 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=8.1
Q ss_pred HHHHHhcCChhHHHHH
Q 046446 178 IHGFIRINEPSKVIEL 193 (244)
Q Consensus 178 ~~~~~~~g~~~~a~~~ 193 (244)
+...+..|+.+-+..+
T Consensus 144 L~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 144 LSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3444556775544433
No 378
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.35 E-value=76 Score=21.81 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcccCCccccHH------HHHHHHHHHHccCChHHHHHHHHHHHH
Q 046446 117 LEIALELFHSLPRGVLVADVV------TYSIMIHGLYNDGQMDKAHDLFLDMEE 164 (244)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (244)
++.|+.+|+.+...- ++.. .-...+..|.+.|.+++|.++|+..-.
T Consensus 94 LESAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 577888888777653 1111 112334567788888888888887543
No 379
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.34 E-value=89 Score=24.70 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCcc--------HHhHHH-HHHHHHcCCCHHHHHHHHHhccc
Q 046446 68 TYTIFIDGLCKNGYIVESVELFRTLRILKCELD--------IQAYSC-LIDGLCKSGRLEIALELFHSLPR 129 (244)
Q Consensus 68 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~ 129 (244)
..+.+++.|.+.+....+..+++.+...+..|+ ..+|.- +...+...+++.+|.+.+.....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 467788999999999999999999988765332 223332 34556778899999887766543
No 380
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.50 E-value=1.9e+02 Score=22.89 Aligned_cols=62 Identities=5% Similarity=0.087 Sum_probs=43.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcH--------hHHHH-HHHHHHhcCChhHHHHHHHHHHH
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNV--------ITFGT-LIHGFIRINEPSKVIELLHKMKE 199 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--------~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 199 (244)
..+.+...|.+.++..-+..+++.+...+..|+. .+|.. +...+...+++.+|.+.+.....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4577889999999999999999998877664332 34433 33455567777777776665544
No 381
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.84 E-value=2.6e+02 Score=25.84 Aligned_cols=67 Identities=6% Similarity=0.043 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcc
Q 046446 152 MDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNE 220 (244)
Q Consensus 152 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (244)
.++..+.|.++.+.--.-|.......+....+.+++..|.+++.++.+.. |+...|..++..+...|
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 34445555555543111233333333333446889999999999988764 67788888877776554
No 382
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.81 E-value=88 Score=18.34 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=15.8
Q ss_pred CHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH
Q 046446 116 RLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD 153 (244)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (244)
..++|.+++..+...| ...|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 4455555555555443 224445555544444433
No 383
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=29.44 E-value=1.2e+02 Score=20.39 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=12.0
Q ss_pred hhhhhhcCChhHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSE 21 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~ 21 (244)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhc
Confidence 4455667777666666654
No 384
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.30 E-value=1.4e+02 Score=20.66 Aligned_cols=63 Identities=8% Similarity=-0.038 Sum_probs=37.8
Q ss_pred HHHHHHHHH---hCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCC-----HHHHHHHHHhcccCC
Q 046446 69 YTIFIDGLC---KNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGR-----LEIALELFHSLPRGV 131 (244)
Q Consensus 69 ~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 131 (244)
+..+|+++. +..|++.|+-.+.+|.+.|-.|.-..-..++-+.-.-|. +..|...++.....|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 334555554 357888888888888888866655555555555555553 234444444444444
No 385
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=28.73 E-value=32 Score=24.66 Aligned_cols=48 Identities=17% Similarity=0.002 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcccc
Q 046446 174 FGTLIHGFIRINEPSKVIELLHKMKEKNVMPDASIVSIVVDLLAKNEIS 222 (244)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (244)
...+..+ ...|+.+.+...++++...|..|.......++.+....|+.
T Consensus 40 ~~~l~~a-l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG~~ 87 (258)
T 2i2x_B 40 IYPIAKA-IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVIRL 87 (258)
T ss_dssp SHHHHHH-HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333333 34567777777777777766666555555566666555544
No 386
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=28.57 E-value=90 Score=21.16 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Q 046446 71 IFIDGLCKNGYIVESVELFRTLRI 94 (244)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~~~~ 94 (244)
.+|.++.+.|++++|.++..++..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667777777777776666543
No 387
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.56 E-value=57 Score=17.21 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=15.5
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCh
Q 046446 9 NKEIEGALNLYSEMLSKG-IKPDV 31 (244)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~-~~~~~ 31 (244)
.-+++.|...|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 347788888888887653 55543
No 388
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.37 E-value=94 Score=18.21 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=31.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH-----hcCChhHHHHHHHHHHH
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI-----RINEPSKVIELLHKMKE 199 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~ 199 (244)
+.|++-+|.+++++.-.....|....|.-+|...+ +.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 44888888888888776553334455555554332 45665 7777766654
No 389
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=28.22 E-value=51 Score=17.09 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 046446 48 ERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78 (244)
Q Consensus 48 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 78 (244)
++...+.++=++.|..+....+....+.+..
T Consensus 13 ~~I~~ive~r~qeGA~~~dvs~Ssv~smLle 43 (55)
T 1dp3_A 13 YKINKIVERRRAEGAKSTDVSFSSISTMLLE 43 (55)
T ss_dssp HHHHHHHHHHHHHTCCSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 390
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=27.95 E-value=78 Score=17.92 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHHhCCcHHHHHHHHHHH
Q 046446 61 GVAADTRTYTIFIDGLCKNGYIVESVELFRTL 92 (244)
Q Consensus 61 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 92 (244)
+++|+..||+-+...+-+.--..+++.+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45777777777776665554445555555444
No 391
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.55 E-value=2e+02 Score=21.85 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=24.2
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHhhhchHHHHHHHH
Q 046446 3 INGYCKNKEIEGALNLYSEMLSKGIKPDVVI--HNTLFIGLFEIHQVERAFKLF 54 (244)
Q Consensus 3 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~ 54 (244)
+...+..|+.+-+..++ +.|..|+... ....+...+..|+.+-+..++
T Consensus 18 L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45556677765554444 4555554321 123344455667665544443
No 392
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.12 E-value=3.2e+02 Score=23.91 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=82.6
Q ss_pred hhhhhhcCC---hhHHHHHHHHHHhCC----CCCChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046446 3 INGYCKNKE---IEGALNLYSEMLSKG----IKPDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDG 75 (244)
Q Consensus 3 i~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 75 (244)
+...|..|. .+.|.+.|+.....+ ++|+. -..+...-.+.|..++-..+++..... .+..--..++.+
T Consensus 693 l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~a 767 (909)
T 4fke_A 693 ISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRSA 767 (909)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHH
Confidence 344455554 356777887776532 44543 333333344556666666666666654 244445678888
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcC-CCHHHHHHHHHh----cccCCccccHHHHHHHHHHHHccC
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKS-GRLEIALELFHS----LPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
++...+.+...++++.............. .++.+.... -..+.|.+.+.+ +.+. .......+..++......-
T Consensus 768 L~~~~d~~~l~~~L~~~l~~~~ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~-~~~~~~~~~~~i~~~~~~~ 845 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLNPDLIRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQD-YGGGSFSFSNLIQGVTRRF 845 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTCTTTSCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTS-SSSCCCCHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHhCCCCCchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHhc
Confidence 88888988888888877654321222222 233343332 224555665543 2221 2223345667777666554
Q ss_pred ChHHHHHHHHHHHH
Q 046446 151 QMDKAHDLFLDMEE 164 (244)
Q Consensus 151 ~~~~a~~~~~~~~~ 164 (244)
.-++-.+-++...+
T Consensus 846 ~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 846 SSEFELQQLEQFKK 859 (909)
T ss_dssp CSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 44444444444443
No 393
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.10 E-value=1.5e+02 Score=19.83 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 046446 33 IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 77 (244)
.++.++..++...-.+.++-.+.+....|. .+..+|---++.++
T Consensus 113 l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~La 156 (174)
T 2p22_A 113 GLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELA 156 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 344455555554455555555555555443 23444433333333
No 394
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.76 E-value=76 Score=21.38 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=6.1
Q ss_pred hhhchHHHHHHHHH
Q 046446 42 FEIHQVERAFKLFD 55 (244)
Q Consensus 42 ~~~~~~~~a~~~~~ 55 (244)
+..|+.+.+..+++
T Consensus 10 ~~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 10 CMENEFFKVQELLH 23 (228)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHh
Confidence 34445444444443
No 395
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=25.69 E-value=1.4e+02 Score=19.26 Aligned_cols=42 Identities=12% Similarity=0.342 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 046446 153 DKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPSKVIELLHK 196 (244)
Q Consensus 153 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 196 (244)
+.+..+|..+-..+ -...+|.-++..+......-.....+..
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 45556666554322 1234566666665555555555555443
No 396
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=25.52 E-value=1.7e+02 Score=20.32 Aligned_cols=172 Identities=12% Similarity=0.000 Sum_probs=76.4
Q ss_pred hhhhhhhcCChhHHHHHHHHHHhCCCCCChh---hHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCCh---hHHHHHHHH
Q 046446 2 LINGYCKNKEIEGALNLYSEMLSKGIKPDVV---IHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADT---RTYTIFIDG 75 (244)
Q Consensus 2 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~ 75 (244)
.+...+..|+.+.+..++ +.|..++.. -.+. +...+..|+.+-+.. +.+.|..++. .-.+.+ ..
T Consensus 6 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L-~~ 75 (261)
T 2xai_A 6 PMHEAAIHGHQLSLRNLI----SQGWAVNIITADHVSP-LHEACLGGHLSCVKI----LLKHGAQVNGVTADWHTPL-FN 75 (261)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSSCCCTTCCCH-HHHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCHH-HH
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHH----HHHCCCCCCCCCCCCCCHH-HH
Confidence 355667778866555544 445444432 2233 334445677655444 4445555442 222233 33
Q ss_pred HHhCCcHHHHHHHHHHHHHhCCCccHHh-HHHHHHHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHH
Q 046446 76 LCKNGYIVESVELFRTLRILKCELDIQA-YSCLIDGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDK 154 (244)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 154 (244)
.+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+..+++.-.... ..+..-.+ .+...+..|+.+-
T Consensus 76 A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t-~L~~A~~~~~~~~ 149 (261)
T 2xai_A 76 ACVSGSWDC----VNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGT-PLYLACENQQRAC 149 (261)
T ss_dssp HHHHTCHHH----HHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTBC-HHHHHHHTTCHHH
T ss_pred HHHcCCHHH----HHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-cCCCCCCC-HHHHHHHhCCHHH
Confidence 344566554 344444443332111 1233445556677765555554322111 11111122 2334445666654
Q ss_pred HHHHHHHHHHcCCCCcHhH-HHHHHHHHHhcCChhHHHHH
Q 046446 155 AHDLFLDMEENAVAPNVIT-FGTLIHGFIRINEPSKVIEL 193 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~ 193 (244)
+..++ +.|..++... -.+.+...++.|..+-+..+
T Consensus 150 v~~Ll----~~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~L 185 (261)
T 2xai_A 150 VKKLL----ESGADVNQGKGQDSPLHAVARTASEELACLL 185 (261)
T ss_dssp HHHHH----HHTCCTTCCBTTBCHHHHHHHHTCHHHHHHH
T ss_pred HHHHH----HcCCCCCCCCCCCChHHHHHHcCCHHHHHHH
Confidence 44444 4455443211 11233444455666544333
No 397
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=25.48 E-value=1.7e+02 Score=20.17 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=21.7
Q ss_pred HHhHHHHHHHHHcCCCHHH----HHHHHHhcccCCccccHHHHHHHHHHHHcc
Q 046446 101 IQAYSCLIDGLCKSGRLEI----ALELFHSLPRGVLVADVVTYSIMIHGLYND 149 (244)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (244)
...|...|..|... .+.+ ..+++++... ..+......+...+.+.
T Consensus 159 ~~~y~~WI~~y~~~-~f~~~v~~~~~~ld~~~~---~~~~~~~~~~~~~F~~a 207 (221)
T 3ibx_A 159 HAFYGHWIKGYSSK-EFQACVNWNINLLDSLTL---ASSKQEIEKLKEIFITT 207 (221)
T ss_dssp CTTTHHHHHHTTSH-HHHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCH-HHHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHH
Confidence 34567777777642 2222 2333333322 23444555555555554
No 398
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.33 E-value=1.7e+02 Score=20.16 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCccHH----hHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 82 IVESVELFRTLRILKCELDIQ----AYSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.+.|+.+|+.+.+.--.+... .--..+..|.+.|.+++|.++|++.-..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 577888888776532111111 1123356789999999999999996544
No 399
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=25.21 E-value=27 Score=18.38 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=13.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCh
Q 046446 10 KEIEGALNLYSEMLSKGIKPDV 31 (244)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~~~~~ 31 (244)
=+++.|...|... +..++|+.
T Consensus 33 Wd~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 33 WNYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp TCSHHHHHHHHHS-TTTSCHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHH
Confidence 4677888888876 33455543
No 400
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.17 E-value=2.1e+02 Score=21.16 Aligned_cols=133 Identities=13% Similarity=0.208 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHhC-C----CCCChhhHHH---HHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcH
Q 046446 11 EIEGALNLYSEMLSK-G----IKPDVVIHNT---LFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYI 82 (244)
Q Consensus 11 ~~~~a~~~~~~~~~~-~----~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 82 (244)
+-+.|.-+|..+... + ..|+...... .+..+.+..+ -++++.+.+.|+.|...++.-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 345688888877653 2 2233222111 1222222222 35677788889999999999999999988889
Q ss_pred HHHHHHHHHHHHhCCCccHHhHHHHHHH----HHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccC
Q 046446 83 VESVELFRTLRILKCELDIQAYSCLIDG----LCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDG 150 (244)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (244)
+.+.++++.+...|...-..+.-+++.. .....++++...+++..... .+......+++-.....
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCC
Confidence 9999999999988754222222233322 23445888988888875443 23344555554444433
No 401
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.88 E-value=1.8e+02 Score=20.21 Aligned_cols=53 Identities=8% Similarity=-0.135 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCccc
Q 046446 81 YIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVA 134 (244)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (244)
..+.+..+++.+.+.|+..|...-...+....+.+.+ ....+-.++.+.|+.+
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 3456667777787777755555555556555442211 2345566666777643
No 402
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.62 E-value=1.2e+02 Score=20.51 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=11.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 046446 141 IMIHGLYNDGQMDKAHDLFLDME 163 (244)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~ 163 (244)
.+|.++...|++++|.+++..+.
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555544433
No 403
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.52 E-value=50 Score=23.63 Aligned_cols=35 Identities=6% Similarity=-0.042 Sum_probs=20.9
Q ss_pred hhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 046446 43 EIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 77 (244)
..++-+.+...++++...|..|.......++.+..
T Consensus 48 ~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~ 82 (258)
T 2i2x_B 48 FEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMG 82 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34666777777777776666655544444554443
No 404
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=24.40 E-value=59 Score=22.50 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=19.0
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 046446 148 NDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFI 182 (244)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 182 (244)
..++.+.+.+++++..+.|..|.......++-+..
T Consensus 14 ~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~ 48 (215)
T 3ezx_A 14 VNQNVAGTPELCKEALAAGVPALDIITKGLSVGMK 48 (215)
T ss_dssp HTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34666666666666666665544433334444433
No 405
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.31 E-value=2.2e+02 Score=21.06 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHc-----CCCCChhHHHHH---HHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHHHHHHcCCCH
Q 046446 46 QVERAFKLFDEMQRD-----GVAADTRTYTIF---IDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLIDGLCKSGRL 117 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~-----~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 117 (244)
+-+.|...+..+... ...|+....... +..+.+.-+ -++++.+.+.|+.|...++.-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888877643 233443322222 222222222 35777788889999888888899889888889
Q ss_pred HHHHHHHHhcccCCccccHHHHHHHHHH----HHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 046446 118 EIALELFHSLPRGVLVADVVTYSIMIHG----LYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINE 186 (244)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 186 (244)
+.+.++|+.+...|...-....-+++.. .....++++...+++..... .+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCCc
Confidence 9999999998877633211222223322 22345778777777653321 234445555554444443
No 406
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.27 E-value=84 Score=16.27 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 046446 47 VERAFKLFDEM 57 (244)
Q Consensus 47 ~~~a~~~~~~m 57 (244)
++.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45555544444
No 407
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.16 E-value=95 Score=16.84 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 046446 34 HNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCK 78 (244)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 78 (244)
++.++..+++..-.+.++..+.+..+.|.. +..+|---.+..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 455566666666666666667666666533 55555544444443
No 408
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=24.04 E-value=1.9e+02 Score=20.38 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=37.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCChhHHHHHHHHHHH
Q 046446 138 TYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIR-INEPSKVIELLHKMKE 199 (244)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 199 (244)
..-.++...-+.+++++..+.++.+.+.+...+..--+.+-.+|-. .|....+++++..+.+
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieq 69 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 69 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344555666678888888887777776666666666665555532 2444555666655543
No 409
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=23.74 E-value=83 Score=16.00 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHcCCCC
Q 046446 46 QVERAFKLFDEMQRDGVAA 64 (244)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~~ 64 (244)
+...|+++++.+.+.|-.|
T Consensus 8 Dv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 4444555555554444433
No 410
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.14 E-value=1e+02 Score=16.95 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 046446 47 VERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 77 (244)
.++|...|.+|....-.....+|...+....
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~ 44 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMII 44 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc
Confidence 4566666666655432333445555555444
No 411
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.91 E-value=2.4e+02 Score=21.02 Aligned_cols=77 Identities=9% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCccHHhHHHHHHHHHcCCCHHHHHHHHHhcccCCcccc-HHHH--HHHHHH----HHccCChHHHHHHH
Q 046446 87 ELFRTLRILKCELDIQAYSCLIDGLCKSGRLEIALELFHSLPRGVLVAD-VVTY--SIMIHG----LYNDGQMDKAHDLF 159 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~li~~----~~~~~~~~~a~~~~ 159 (244)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|.... ...+ -+++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4667777888888888888888888888889999999999998764322 2222 233322 23357888888877
Q ss_pred HHHH
Q 046446 160 LDME 163 (244)
Q Consensus 160 ~~~~ 163 (244)
+.+.
T Consensus 310 ~~~p 313 (345)
T 2qfz_A 310 QNLP 313 (345)
T ss_dssp TSCS
T ss_pred HcCC
Confidence 6544
No 412
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.84 E-value=70 Score=18.08 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=11.1
Q ss_pred hhhhhcCChhHHHHHHHHHHh
Q 046446 4 NGYCKNKEIEGALNLYSEMLS 24 (244)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~ 24 (244)
+-|+..|+++.|...|+...+
T Consensus 20 Re~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 20 REYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHH
Confidence 345555555555555555443
No 413
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.82 E-value=1.7e+02 Score=19.26 Aligned_cols=171 Identities=13% Similarity=0.029 Sum_probs=93.5
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
++..+-...+..+...+..+. ...+.++.. .++..+-...+.++...++.+.. ..+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 566666666666666655332 233333332 34666666666677776665333 33333332 35666666667
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChh
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRINEPS 188 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 188 (244)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|..
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 7777777654 3333444443 246666667777777777644 3344444443 25666666777777777664
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 046446 189 KVIELLHKMKEKNVMPDASIVSIVVDLLAKN 219 (244)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (244)
.+...+..+... ++..+-...+.++.+.
T Consensus 169 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 169 RVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 455555555543 3555555555555443
No 414
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=22.63 E-value=55 Score=23.33 Aligned_cols=7 Identities=0% Similarity=-0.107 Sum_probs=3.2
Q ss_pred hCCcHHH
Q 046446 78 KNGYIVE 84 (244)
Q Consensus 78 ~~~~~~~ 84 (244)
..|+.+-
T Consensus 120 ~~g~~~~ 126 (276)
T 4hbd_A 120 SHANFPV 126 (276)
T ss_dssp HTTCHHH
T ss_pred HCCCHHH
Confidence 4455443
No 415
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=22.47 E-value=68 Score=14.55 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=12.3
Q ss_pred HHHHHcCCCHHHHHHHHHhcc
Q 046446 108 IDGLCKSGRLEIALELFHSLP 128 (244)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~ 128 (244)
+..|.+.|..++|..+-.+++
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 455556666666666655554
No 416
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.95 E-value=1.8e+02 Score=19.30 Aligned_cols=140 Identities=13% Similarity=-0.014 Sum_probs=81.2
Q ss_pred CChhhHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCccHHhHHHHH
Q 046446 29 PDVVIHNTLFIGLFEIHQVERAFKLFDEMQRDGVAADTRTYTIFIDGLCKNGYIVESVELFRTLRILKCELDIQAYSCLI 108 (244)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 108 (244)
++..+-...+.++...+..+ +...+..+.. .++..+-...+.++.+.++.+. ...+..+.+ .++..+-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHH
Confidence 46666666666666666532 3333333332 3577777777788888777543 344444433 46666666777
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 046446 109 DGLCKSGRLEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMDKAHDLFLDMEENAVAPNVITFGTLIHGFIRI 184 (244)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 184 (244)
.++...|..+ +...+..+... ++..+-...+.++.+.+. .++...+..+.+. ++...-...+.++...
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 7777777644 44455555543 566777777778877776 4455555555543 4555444445554443
No 417
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.93 E-value=34 Score=21.20 Aligned_cols=51 Identities=4% Similarity=0.149 Sum_probs=32.8
Q ss_pred hchHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHh---CCcHHHHHHHHHHHHHhCC
Q 046446 44 IHQVERAFKLFDEMQRDGVA-ADTRTYTIFIDGLCK---NGYIVESVELFRTLRILKC 97 (244)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~ 97 (244)
..++++|.+.+..|++.-+. -.+..||..+..+-. .++. ..++..+.+.++
T Consensus 40 ~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~l 94 (120)
T 1q2z_A 40 TPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 35788888888888765332 267788888877643 3333 455666665554
No 418
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=21.84 E-value=2.3e+02 Score=20.38 Aligned_cols=112 Identities=9% Similarity=0.081 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCccHHhHHHHHHHHHcCC---C---HHHHHHHHHhcccCCccccHHHHHHHHHHHHccCChH---H
Q 046446 84 ESVELFRTLRILKCELDIQAYSCLIDGLCKSG---R---LEIALELFHSLPRGVLVADVVTYSIMIHGLYNDGQMD---K 154 (244)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~ 154 (244)
.|.++++.+.+ |.+++..+|..+++++.... + +.+|.+.+..+.-. .+.....+.+.+.. ...+.. .
T Consensus 94 ~A~r~L~~LLe-~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~--~~~~~V~~~l~sLl-~Skd~~vK~a 169 (265)
T 3b2a_A 94 KALRALGYLVK-DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL--EDSKLVRTYINELV-VSPDLYTKVA 169 (265)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS--CCCHHHHHHHHHHH-TCSSHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc--cchHHHHHHHHHHH-hCCChhHHHH
Confidence 35566666665 56889999988888876433 2 45667777777333 33444444444444 444432 3
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHH---HHHHHhcCCh---hHHHHHHHHHHHCC
Q 046446 155 AHDLFLDMEENAVAPNVITFGTL---IHGFIRINEP---SKVIELLHKMKEKN 201 (244)
Q Consensus 155 a~~~~~~~~~~~~~p~~~~~~~l---~~~~~~~g~~---~~a~~~~~~~~~~~ 201 (244)
|..++-++....- |...+..+ +.-+.+..+. +.|...+.++....
T Consensus 170 gl~~L~eia~~S~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 170 GFCLFLNMLNSSA--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHGGGCS--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 5556666554221 11111111 2233344443 55666677766553
No 419
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.82 E-value=1.2e+02 Score=17.25 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 046446 47 VERAFKLFDEMQRDGVAADTRTYTIFIDGLC 77 (244)
Q Consensus 47 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 77 (244)
.+++...|.+|+...-.+...+|...+...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~ 46 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc
Confidence 4555666666554422223345555554443
No 420
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=21.28 E-value=1.6e+02 Score=19.37 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=8.4
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 046446 177 LIHGFIRINEPSKVIELLHKM 197 (244)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~ 197 (244)
++.-+.+.|....++-+|++-
T Consensus 139 ~l~~l~~~g~~~~g~~~~D~~ 159 (173)
T 1s3q_A 139 IVEKLRLIGEDKRALLFLDKE 159 (173)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHhHHhHH
Confidence 333333334333344444443
No 421
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.36 E-value=2.3e+02 Score=19.86 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCCccHH--h-----HHHHHHHHHcCCCHHHHHHHHHhcccC
Q 046446 82 IVESVELFRTLRILKCELDIQ--A-----YSCLIDGLCKSGRLEIALELFHSLPRG 130 (244)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~--~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~ 130 (244)
.+.|+.+|+.+.+.-..++.. . --..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567777887777653211111 1 123345677788888888888877665
Done!