BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046449
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 37/241 (15%)
Query: 1 MEEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFF----------PNFF 50
M++I+H MV VNG+ MH+AE GEGP +LF+HGFPELWY+WR Q+ + P+
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 51 KSAMEPGKIEAQIAQVGTAKVLKNILANRKPGPSCFPEENAFGIDPENRVTLPSW----- 105
G ++ ++ +++A + + P E + + L +W
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLE---AIAPNEEKVFVVAHDWGALIAWHLCLF 124
Query: 106 ------------------DPNLKPVETSRAMYGDNFYICKFQEPGVLEAGIAHIGSKLMI 147
+P + VE +A+YG++ YI +FQ PG +EA A IG+K ++
Sbjct: 125 RPDKVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVL 184
Query: 148 ASSLTTRRPGPPTISE-DAIAHLARETINLPSWLSEEEFNYYVTKFDQSGFTGGLNYYRA 206
LT R P P + + + + L SWLSEEE +YY KF+Q+GFTG +NYYRA
Sbjct: 185 KKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRA 244
Query: 207 I 207
+
Sbjct: 245 L 245
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 124/241 (51%), Gaps = 37/241 (15%)
Query: 1 MEEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFF----------PNFF 50
M++I+H MV VNG+ MH+AE GEGP +LF+HGFPELWY+WR Q+ + P+
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 51 KSAMEPGKIEAQIAQVGTAKVLKNILANRKPGPSCFPEENAFGIDPENRVTLPSW----- 105
G ++ ++ +++A + + P E + + L +W
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLE---AIAPNEEKVFVVAHDWGALIAWHLCLF 124
Query: 106 ------------------DPNLKPVETSRAMYGDNFYICKFQEPGVLEAGIAHIGSKLMI 147
+P + VE +A++G++ YI +FQ PG +EA A IG+K ++
Sbjct: 125 RPDKVKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVL 184
Query: 148 ASSLTTRRPGPPTISE-DAIAHLARETINLPSWLSEEEFNYYVTKFDQSGFTGGLNYYRA 206
LT R P P + + + + L SWLSEEE +YY KF+Q+GFTG +NYYRA
Sbjct: 185 KKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRA 244
Query: 207 I 207
+
Sbjct: 245 L 245
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 47/244 (19%)
Query: 3 EIKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKS-----AME- 55
++ HG V V +R+H E G GP V HGFPE WY+WR QI P ++ AM+
Sbjct: 17 DMSHGYVTVKPRVRLHFVELGSGPAVCLCHGFPESWYSWRYQI--PALAQAGYRVLAMDM 74
Query: 56 --------PGKIEAQIAQVGTAKVL---------KNILANRKPG------PSCFPEENAF 92
P +IE +V +++ + + G + F E
Sbjct: 75 KGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVR 134
Query: 93 GIDPENRVTLPSWDPNLKPVETSRA--MYGDNFYICKFQEPGVLEAGIAHIGSKLMIASS 150
+ N +P+ +PN+ P+E+ +A ++ Y FQEPGV EA + S+ +
Sbjct: 135 AVASLNTPFIPA-NPNMSPLESIKANPVFDYQLY---FQEPGVAEAELEQNLSRTFKS-- 188
Query: 151 LTTRRPGPPTISEDAIAHLARETINLPS------WLSEEEFNYYVTKFDQSGFTGGLNYY 204
R +S + +N P ++EEE +YV +F +SGF G LN+Y
Sbjct: 189 -LFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 247
Query: 205 RAID 208
R ++
Sbjct: 248 RNME 251
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 47/244 (19%)
Query: 3 EIKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKS-----AME- 55
++ HG V V +R+H E G GP V HGFPE WY+WR QI P ++ AM+
Sbjct: 32 DMSHGYVTVKPRVRLHFVELGSGPAVCLCHGFPESWYSWRYQI--PALAQAGYRVLAMDM 89
Query: 56 --------PGKIEAQIAQVGTAKVL---------KNILANRKPG------PSCFPEENAF 92
P +IE +V +++ + + G + F E
Sbjct: 90 KGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVR 149
Query: 93 GIDPENRVTLPSWDPNLKPVETSRA--MYGDNFYICKFQEPGVLEAGIAHIGSKLMIASS 150
+ N +P+ +PN+ P+E+ +A ++ Y FQEPGV EA + S+ +
Sbjct: 150 AVASLNTPFIPA-NPNMSPLESIKANPVFDYQLY---FQEPGVAEAELEQNLSRTFKS-- 203
Query: 151 LTTRRPGPPTISEDAIAHLARETINLPS------WLSEEEFNYYVTKFDQSGFTGGLNYY 204
R +S + +N P ++EEE +YV +F +SGF G LN+Y
Sbjct: 204 -LFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 262
Query: 205 RAID 208
R ++
Sbjct: 263 RNME 266
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 47/244 (19%)
Query: 3 EIKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKS-----AME- 55
++ HG V V +R+H E G GP V HGFPE WY+WR QI P ++ AM+
Sbjct: 236 DMSHGYVTVKPRVRLHFVELGSGPAVCLCHGFPESWYSWRYQI--PALAQAGYRVLAMDM 293
Query: 56 --------PGKIEAQIAQVGTAKVL---------KNILANRKPG------PSCFPEENAF 92
P +IE +V +++ + + G + F E
Sbjct: 294 KGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVR 353
Query: 93 GIDPENRVTLPSWDPNLKPVETSRA--MYGDNFYICKFQEPGVLEAGIAHIGSKLMIASS 150
+ N +P+ +PN+ P+E+ +A ++ Y FQEPGV EA + S+ +
Sbjct: 354 AVASLNTPFIPA-NPNMSPLESIKANPVFDYQLY---FQEPGVAEAELEQNLSRTFKS-- 407
Query: 151 LTTRRPGPPTISEDAIAHLARETINLPS------WLSEEEFNYYVTKFDQSGFTGGLNYY 204
R +S + +N P ++EEE +YV +F +SGF G LN+Y
Sbjct: 408 -LFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 466
Query: 205 RAID 208
R ++
Sbjct: 467 RNME 470
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 3 EIKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNF------------ 49
++ HG V V GIR+H E G GP + HGFPE W++WR QI P
Sbjct: 234 DVSHGYVTVKPGIRLHFVEMGSGPALCLCHGFPESWFSWRYQI--PALAQAGFRVLAIDM 291
Query: 50 --FKSAMEPGKIEAQIAQVGTAKVLKNILANRKPGP---------------SCFPEENAF 92
+ + P +IE ++ +++ + P + F E
Sbjct: 292 KGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVR 351
Query: 93 GIDPENRVTLPSWDPNLKPVETSRAMYGDNFYICKFQEPGVLEAGIAHIGSKLMIASSLT 152
+ N +P DP++ P++ R++ N+ + FQEPGV EA + S+ +
Sbjct: 352 AVASLNTPFMPP-DPDVSPMKVIRSIPVFNYQL-YFQEPGVAEAELEKNMSRTFKSFFRA 409
Query: 153 TRRPGPPTISEDA----IAHLARETINLPSWLSEEEFNYYVTKFDQSGFTGGLNYYR 205
+ G + + I E NL +EEE +Y+ +F ++GF G LN+YR
Sbjct: 410 SDETGFIAVHKATEIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNWYR 466
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 6 HGMVGVNGIRMHIAEKG----EGPVVLFLHGFPELWYTWRRQI 44
H ++ G R+H +GP+V+ LHGFPE WY+WR QI
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQI 53
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 142 GSKLMIASSLTTRRPGPPTISEDA---IAHLARETINLPSWLSEEEFNYYVTKFDQSGFT 198
G L + R GP ++E A A + ET +P+W +E + ++Y +F++SGF
Sbjct: 215 GVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET--MPAWFTEADLDFYTGEFERSGFG 272
Query: 199 GGLNYYRAID 208
G L++Y ID
Sbjct: 273 GPLSFYHNID 282
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938)
From Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 6 HGMVGVNGIRMHIAEKG----EGPVVLFLHGFPELWYTWRRQI 44
H ++ G R+H +GP+V+ LHGFPE WY+WR QI
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQI 47
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 142 GSKLMIASSLTTRRPGPPTISEDA---IAHLARETINLPSWLSEEEFNYYVTKFDQSGFT 198
G L + R GP ++E A A + ET +P+W +E + ++Y +F++SGF
Sbjct: 209 GVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET--MPAWFTEADLDFYTGEFERSGFG 266
Query: 199 GGLNYYRAID 208
G L++Y ID
Sbjct: 267 GPLSFYHNID 276
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 2 EEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQI 44
E+ KH V + +++H +G GP +L LHG+P W+ W + I
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVI 49
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 11 VNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
V+G+++H + G+GP+V+ +HGF + WY W +
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQ 48
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 11 VNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
V+G+++H + G+GP+V+ +HGF + WY W +
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQ 48
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 11 VNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
V+G+++H + G+GP+V+ +HGF + WY W +
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQ 48
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From
Pseudomonas Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From
Pseudomonas Aeruginosa, With Bound Mfa
Length = 301
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 11 VNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
+ R+ +A KG GP +L LHG+P+ W R
Sbjct: 18 TSAARLRVAVKGSGPPLLLLHGYPQTHLAWHR 49
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 2 EEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
E + +V V + ++ G GP +L LHGFP+ + W R
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWAR 43
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From
Burkholderia Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From
Burkholderia Sp. Fa1
Length = 304
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 2 EEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
E + +V V + ++ G GP +L LHGFP+ + W R
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWAR 43
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 33 FPELWYTWRRQIFFPNFFKSAMEPGKIEAQIAQ------VGTAKVLKNILANRKPGPSCF 86
F + + W +I + F+SA E +I A++A+ +GT K+L++ + + G
Sbjct: 672 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731
Query: 87 PEENAFGIDPENRV 100
EE+ FG+ + R+
Sbjct: 732 DEEHRFGVRHKERI 745
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 7 GMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKSAMEPGKIEAQIAQV 66
V +NG+ I+ G GP+ F+H ++ + + ++++ AM G +AQ A
Sbjct: 516 ATVKINGVETEISGSGNGPLAAFVHALADVGF----DVAVLDYYEHAMSAGD-DAQAAAY 570
Query: 67 GTAKVLKNILANRKPG 82
A V I + +PG
Sbjct: 571 VEASV--TIASPAQPG 584
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKSAMEPGKIEAQIAQVGT 68
V +NG+ I+ G GP+ F+H ++ + + ++++ AM G +AQ A
Sbjct: 520 VKINGVETEISGSGNGPLAAFVHALADVGF----DVAVLDYYEHAMSAGD-DAQAAAYVE 574
Query: 69 AKVLKNILANRKPG 82
A V I + +PG
Sbjct: 575 ASV--TIASPAQPG 586
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial
Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial
Origin
Length = 309
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQI 44
V V G + ++G G VLFLHG P Y WR I
Sbjct: 14 VEVEGATIAYVDEGSGQPVLFLHGNPTSSYLWRNII 49
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 49
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 49
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 4 IKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQ 43
I G I ++ + G G V+ +HGFP ++W RQ
Sbjct: 3 ITVGQENSTSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQ 42
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 4 IKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQ 43
I G I ++ + G G V+ +HGFP ++W RQ
Sbjct: 3 ITVGQENSTSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQ 42
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 4 IKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQ 43
I G I ++ + G G V+ +HGFP ++W RQ
Sbjct: 3 ITVGQENSTSIDLYYEDHGAGQPVVLIHGFPLSGHSWERQ 42
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
At 1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
+ + G RM ++G G +LF HG P Y WR
Sbjct: 13 IEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWR 45
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
+ + G RM ++G G +LF HG P Y WR
Sbjct: 14 IEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWR 46
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
+ + G RM ++G G +LF HG P Y WR
Sbjct: 14 IEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWR 46
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,3-Propanediol, A
Product Of Debromidation Of Dibrompropane, At 2.0a
Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
+ + G RM ++G G +LF HG P Y WR
Sbjct: 14 IEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWR 46
>pdb|2DMK|A Chain A, The Solution Structure Of The Fn3 Domain Of Human Midline
2 Protein
Length = 127
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 156 PGPPTISEDAIAHLARETINLPSWLSEEEFNYYVTKFDQSGFTGGLNY---YRAID 208
P PP+I E+ + + +TI + W+S++EF+ + + FTG N+ Y ++D
Sbjct: 16 PNPPSIREE-LCTASHDTITV-HWISDDEFSISSYELQYTIFTGQANFISLYNSVD 69
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 4 IKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQ 43
I G I ++ + G G V+ +HGFP ++W RQ
Sbjct: 4 ITVGQENSTSIDLYYEDHGTGVPVVLIHGFPLSGHSWERQ 43
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 22 GEGPVVLFLHGFPELWYTWRR 42
G+GP +L LHGFP+ W R
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHR 51
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 22 GEGPVVLFLHGFPELWYTWRR 42
G+GP +L LHGFP+ W R
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHR 51
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 22 GEGPVVLFLHGFPELWYTWRR 42
G+GP +L LHGFP+ W R
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHR 51
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 22 GEGPVVLFLHGFPELWYTWRR 42
G+GP +L LHGFP+ W R
Sbjct: 31 GDGPPLLLLHGFPQTHVMWHR 51
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGF 33
V + I +++ EKG GP+ LF HG
Sbjct: 53 VDIGRITLNVREKGSGPLXLFFHGI 77
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,3-Propandiol
Length = 300
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 11 VNGIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
+ G RM ++G+G ++F HG P Y WR
Sbjct: 17 IAGKRMAYIDEGKGDAIVFQHGNPTSSYLWR 47
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 11 VNGIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
+ G RM ++G+G ++F HG P Y WR
Sbjct: 15 IAGKRMAYIDEGKGDAIVFQHGNPTSSYLWR 45
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In
Complex With 3a,4,7,7a-Tetrahydro-Benzo [1,3]
Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In
Complex With 3a,4,7,7a-Tetrahydro-Benzo [1,3]
Dioxol-2-One
Length = 279
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 14 IRMHIAEKGEGPVVLFLHGFPELWYTWRRQ 43
I ++ ++G G V+ +HG+P ++W RQ
Sbjct: 13 IELYYEDQGSGQPVVLIHGYPLDGHSWERQ 42
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 3 EIKHGMVGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWR 41
EI+ V G M E G + PVVLFLHG P + WR
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWR 46
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 3 EIKHGMVGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWR 41
EI+ V G M E G + PVVLFLHG P + WR
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWR 46
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 3 EIKHGMVGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWR 41
EI+ V G M E G + PVVLFLHG P + WR
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWR 46
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 8 MVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
+V R+++ + G G +L LHG+P+ W +
Sbjct: 9 IVDTTEARINLVKAGHGAPLLLLHGYPQTHVMWHK 43
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 27.3 bits (59), Expect = 6.9, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 9 VGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKSAMEPGKIEAQIAQVGT 68
V +NG+ I+ G GP+ F+H ++ + + ++++ A G +AQ A
Sbjct: 518 VKINGVETEISGSGNGPLAAFVHALADVGF----DVAVLDYYEHAXSAGD-DAQAAAYVE 572
Query: 69 AKVLKNILANRKPG 82
A V I + +PG
Sbjct: 573 ASV--TIASPAQPG 584
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 105 WDPNLKPVETSRAMYGDNFYICKFQEPGVLEAGIAHIGSKLMIASSLTTRRPGPPTISED 164
+DPN+ V + Y+ + ++EA S +I L + P P S+
Sbjct: 213 YDPNVVKVFVAEVSLA---YMKPERSDSIIEATSKMENSHFIILEQLIPKGPFEP-FSKQ 268
Query: 165 AIAHLARETINLPSWLSEEEFNYYVTKFDQSGF 197
+AH R L S L V +F++ GF
Sbjct: 269 MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGF 301
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIT|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 453
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 95 DPENRVTLPSWDPNLKPVETSRAMYGD 121
DPE+++TL W N K E ++ ++ D
Sbjct: 95 DPESKITLELWQRNNKEPELNKKLFDD 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,918,326
Number of Sequences: 62578
Number of extensions: 275996
Number of successful extensions: 678
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 71
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)