BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046449
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P80299|HYES_RAT Bifunctional epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1
SV=1
Length = 554
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 42/239 (17%)
Query: 3 EIKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNF------------ 49
++ HG V V GIR+H E G GP + HGFPE W++WR QI P
Sbjct: 234 DVSHGYVTVKPGIRLHFVEMGSGPAICLCHGFPESWFSWRYQI--PALAQAGFRVLAIDM 291
Query: 50 --FKSAMEPGKIEAQIAQVGTAKVLKNILANRKPGP-----------------SCFPEEN 90
+ + P +IE ++ +++ N+ P + F E
Sbjct: 292 KGYGDSSSPPEIEEYAMELLCEEMV--TFLNKLGIPQAVFIGHDWAGVLVWNMALFHPER 349
Query: 91 AFGIDPENRVTLPSWDPNLKPVETSRAMYGDNFYICKFQEPGVLEAGIAHIGSKLMIASS 150
+ N +P +P + P+E R++ N+ + FQEPGV EA + S+ +
Sbjct: 350 VRAVASLNTPLMPP-NPEVSPMEVIRSIPVFNYQL-YFQEPGVAEAELEKNMSRTFKSFF 407
Query: 151 LTTRRPGPPTISEDA----IAHLARETINLPSWLSEEEFNYYVTKFDQSGFTGGLNYYR 205
T+ G T+++ I E + +EEE YY+ +F +SGF G LN+YR
Sbjct: 408 RTSDDMGLLTVNKATEMGGILVGTPEDPKVSKITTEEEIEYYIQQFKKSGFRGPLNWYR 466
>sp|P34913|HYES_HUMAN Bifunctional epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2
Length = 555
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 47/244 (19%)
Query: 3 EIKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKS-----AME- 55
++ HG V V +R+H E G GP V HGFPE WY+WR QI P ++ AM+
Sbjct: 236 DMSHGYVTVKPRVRLHFVELGSGPAVCLCHGFPESWYSWRYQI--PALAQAGYRVLAMDM 293
Query: 56 --------PGKIEAQIAQVGTAKVL---------KNILANRKPG------PSCFPEENAF 92
P +IE +V +++ + + G + F E
Sbjct: 294 KGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVR 353
Query: 93 GIDPENRVTLPSWDPNLKPVETSRA--MYGDNFYICKFQEPGVLEAGIAHIGSKLMIASS 150
+ N +P+ +PN+ P+E+ +A ++ Y FQEPGV EA + S+ +
Sbjct: 354 AVASLNTPFIPA-NPNMSPLESIKANPVFDYQLY---FQEPGVAEAELEQNLSRTFKS-- 407
Query: 151 LTTRRPGPPTISEDAIAHLARETINLPS------WLSEEEFNYYVTKFDQSGFTGGLNYY 204
R +S + +N P ++EEE +YV +F +SGF G LN+Y
Sbjct: 408 -LFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 466
Query: 205 RAID 208
R ++
Sbjct: 467 RNME 470
>sp|P34914|HYES_MOUSE Bifunctional epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2
Length = 554
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 3 EIKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNF------------ 49
++ HG V V GIR+H E G GP + HGFPE W++WR QI P
Sbjct: 234 DVSHGYVTVKPGIRLHFVEMGSGPALCLCHGFPESWFSWRYQI--PALAQAGFRVLAIDM 291
Query: 50 --FKSAMEPGKIEAQIAQVGTAKVLKNILANRKPGP---------------SCFPEENAF 92
+ + P +IE ++ +++ + P + F E
Sbjct: 292 KGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVR 351
Query: 93 GIDPENRVTLPSWDPNLKPVETSRAMYGDNFYICKFQEPGVLEAGIAHIGSKLMIASSLT 152
+ N +P DP++ P++ R++ N+ + FQEPGV EA + S+ +
Sbjct: 352 AVASLNTPFMPP-DPDVSPMKVIRSIPVFNYQL-YFQEPGVAEAELEKNMSRTFKSFFRA 409
Query: 153 TRRPGPPTISEDA----IAHLARETINLPSWLSEEEFNYYVTKFDQSGFTGGLNYYR 205
+ G + + I E NL +EEE +Y+ +F ++GF G LN+YR
Sbjct: 410 SDETGFIAVHKATEIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNWYR 466
>sp|Q6Q2C2|HYES_PIG Bifunctional epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1
Length = 555
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 51/245 (20%)
Query: 4 IKHGMVGVN-GIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKSAMEPGKIEA- 61
+ HG V + G+R+H E G GP V HGFPE W++WR QI P ++ ++
Sbjct: 237 LSHGYVLIKPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQI--PALAQAGFRVLAVDMK 294
Query: 62 ---------QIAQVGTAKVLKNILA-NRKPGPS------------------CFPEENAFG 93
+I + + K+++ K G S F E
Sbjct: 295 GYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRA 354
Query: 94 IDPENRVTLPSWDPNLKPVETSRA--MYGDNFYICKFQEPGVLEAGIAHIGSKLMI---- 147
+ N +PS +PN+ P+E +A ++ Y FQEPGV EA + +
Sbjct: 355 VASLNTPFMPS-NPNVSPMEIIKANPVFDYQLY---FQEPGVAEAELEQNLDRTFKNFFR 410
Query: 148 ---ASSLTTRRPGPPTISEDAIAHLAR-ETINLPSWLSEEEFNYYVTKFDQSGFTGGLNY 203
+ LTT R + E + E +L ++EE+ +YV +F +SGF G LN+
Sbjct: 411 AHDETFLTTNR-----VRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNW 465
Query: 204 YRAID 208
YR ++
Sbjct: 466 YRNME 470
>sp|O31581|YFHM_BACSU AB hydrolase superfamily protein YfhM OS=Bacillus subtilis
(strain 168) GN=yfhM PE=3 SV=1
Length = 286
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 1 MEEIKHGMVGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
M+ +K V NGI +H+A G +GP+++ LHGFPE WY W+ QI
Sbjct: 1 MDGVKCQFVNTNGITLHVAAAGREDGPLIVLLHGFPEFWYGWKNQI 46
>sp|Q9H6B9|EPHX3_HUMAN Epoxide hydrolase 3 OS=Homo sapiens GN=EPHX3 PE=2 SV=1
Length = 360
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 48/231 (20%)
Query: 5 KHGMVGV--NGIRMHI--AEKGEGPVVLFLHGFPELWYTWRRQI--FFPNFFKSAME--- 55
+HG + + +G+R+H A +G GP++LFLHGFPE W++WR Q+ F F A++
Sbjct: 74 EHGFLNLKSSGLRLHYVSAGRGNGPLMLFLHGFPENWFSWRYQLREFQSRFHVVAVDLRG 133
Query: 56 ------PGKIEAQIAQVGTAKVLKNILANRKPGPSCFPEENAFGIDPENRVTLPSWDPNL 109
P ++ + + IL + + + PS +
Sbjct: 134 YGPSDAPRDVDCYTIDLLLVDIKDVILGLGYSKCILVAHDWGALLAWHFSIYYPSLVERM 193
Query: 110 KPVETS-RAMYGD-----------NFYICKFQEPGVLEAGIAHIGSKLMIASSLTTRRPG 157
V + ++Y D + Y+ FQ P + E ++ + ++ ++LT R+ G
Sbjct: 194 VVVSGAPMSVYQDYSLHHISQFFRSHYMFLFQLPWLPEKLLS-MSDFQILKTTLTHRKTG 252
Query: 158 PPTISEDAIAHLARETINLPSWLSEEEFNYYVTKFDQ-SGFTGGLNYYRAI 207
P L+ E ++ F Q G TG LNYYR +
Sbjct: 253 IPC-------------------LTPSELEAFLYNFSQPGGLTGPLNYYRNL 284
>sp|Q3V1F8|EPHX3_MOUSE Epoxide hydrolase 3 OS=Mus musculus GN=Ephx3 PE=2 SV=2
Length = 367
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 46/225 (20%)
Query: 9 VGVNGIRMHI--AEKGEGPVVLFLHGFPELWYTWRRQI--FFPNFFKSAME--------- 55
V +G+R+H A G GP++LFLHGFPE W++WR Q+ F +F A++
Sbjct: 87 VKSSGLRLHYVSAGHGNGPLMLFLHGFPENWFSWRYQLREFQSHFHVVAVDMRGYSPSDA 146
Query: 56 PGKIEAQIAQVGTAKV---------LKNILANRKPGPSCFPEENAFGIDPENRVTLPSWD 106
P +++ + + K IL + G S E + + R+ + +
Sbjct: 147 PKEVDCYTIDLLLDDIKDTILGLGYSKCILVSHDWGASLAWEFSIYYPSLVERMVVANGP 206
Query: 107 PNLKPVETSRAMYGDNF---YICKFQEPGVLEAGIAHIGSKLMIASSLTTRRPGPPTISE 163
P E S G F Y+ FQ P + E ++ + ++ + T R+ G P
Sbjct: 207 PMSVIQEYSIHHIGQIFRSNYMFLFQLPWLPEKLLS-MSDFQILKDTFTHRKNGIPG--- 262
Query: 164 DAIAHLARETINLPSWLSEEEFNYYVTKFDQSG-FTGGLNYYRAI 207
L+ E ++ F Q G TG +NYYR +
Sbjct: 263 ----------------LTPSELEAFLYHFSQPGCLTGPINYYRNV 291
>sp|O52866|HYES_CORS2 Soluble epoxide hydrolase OS=Corynebacterium sp. (strain C12)
PE=1 SV=3
Length = 286
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 3 EIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQI 44
EI H +NG RMH G G ++ LHG+P+ WY WR I
Sbjct: 4 EITHHQAMINGYRMHYVTAGSGYPLVLLHGWPQSWYEWRNVI 45
>sp|Q6IE26|EPHX4_MOUSE Epoxide hydrolase 4 OS=Mus musculus GN=Ephx4 PE=2 SV=2
Length = 359
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 12 NGIRMHIAEKGE--GPVVLFLHGFPELWYTWRRQI 44
+G+R H GE P++L LHGFPE WY+WR Q+
Sbjct: 77 SGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRHQL 111
>sp|Q0IIS3|EPHX3_XENTR Epoxide hydrolase 3 OS=Xenopus tropicalis GN=ephx3 PE=2 SV=1
Length = 367
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 5 KHGMVGV--NGIRMHIAEKGE--GPVVLFLHGFPELWYTWRRQI 44
+HG + + +GIR H G+ P++L LHGFPE WY+WR Q+
Sbjct: 74 QHGYIRMKDSGIRFHYVASGDKRNPLMLLLHGFPENWYSWRYQL 117
>sp|Q8IUS5|EPHX4_HUMAN Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 SV=2
Length = 362
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 12 NGIRMHIAEKGE--GPVVLFLHGFPELWYTWRRQI 44
+G+R H GE P++L LHGFPE WY+WR Q+
Sbjct: 79 SGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRYQL 113
>sp|Q01398|DEH1_MORSB Haloacetate dehalogenase H-1 OS=Moraxella sp. (strain B) GN=dehH1
PE=1 SV=1
Length = 294
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 4 IKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
K+ V V+G+ + GEGP VL LHGFP+ W R
Sbjct: 6 FKNSTVTVDGVDIAYTVSGEGPPVLMLHGFPQNRAMWAR 44
>sp|Q8NE31|FA13C_HUMAN Protein FAM13C OS=Homo sapiens GN=FAM13C PE=2 SV=2
Length = 585
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 66 VGTAKVLKNILANRKP--GPSC--FPEENAFGIDPENRVTLPSWDPNLKPVETSRAMYGD 121
VGT+++L +I P P C F + F +DPE+ + PS + P +SR GD
Sbjct: 220 VGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSTQQFMMPRSSSRCSCGD 279
Query: 122 NFYICKFQEPGVLEAGIAHIGS 143
+EP + HI S
Sbjct: 280 G------KEPQTITQLTKHIQS 295
>sp|Q8U671|DHAA_AGRT5 Haloalkane dehalogenase OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=dhaA PE=3 SV=1
Length = 304
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 13 GIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
G+++H E G G ++FLHG P Y WR
Sbjct: 29 GLQIHTVEHGSGAPIVFLHGNPTSSYLWR 57
>sp|Q1JU72|DEHA_BURSP Fluoroacetate dehalogenase OS=Burkholderia sp. GN=fac-dex PE=1
SV=1
Length = 304
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 2 EEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRR 42
E + +V V + ++ G GP +L LHGFP+ + W R
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWAR 43
>sp|Q7TVV6|LEU1_MYCBO 2-isopropylmalate synthase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=leuA PE=3 SV=1
Length = 701
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 7 GMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKSAMEPGKIEAQIAQV 66
V +NG+ I+ G GP+ F+H ++ + + ++++ AM G +AQ A
Sbjct: 516 ATVKINGVETEISGSGNGPLAAFVHALADVGF----DVAVLDYYEHAMSAGD-DAQAAAY 570
Query: 67 GTAKVLKNILANRKPGPSCFPEENAFGIDPENRVTLPSWDPNLKPVETSRAMYGDNFYIC 126
A V I + +PG E DP VT+ S +P E R D I
Sbjct: 571 VEASV--TIASPAQPG-----EAGRHASDP---VTIAS---PAQPGEAGR-HASDPVTIA 616
Query: 127 KFQEPGVLEAGIAHIGSKLMIAS 149
+PG EAG H + IAS
Sbjct: 617 SPAQPG--EAG-RHASDPVTIAS 636
>sp|Q4ULN0|LON_RICFE Lon protease OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
GN=lon PE=3 SV=1
Length = 778
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 153 TRRPGPPTISEDAIAHLARETINLPSWLSEEEFNY-YVTKFDQSGFTGGLNY 203
TR+ +++ + H+A ++ NL +L +++N+ K DQ G T GL Y
Sbjct: 552 TRKALKQILADKTVKHIAIDSSNLEEFLEAKKYNFGLAEKEDQIGSTTGLAY 603
>sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia coli (strain
K12) GN=mfd PE=1 SV=2
Length = 1148
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 33 FPELWYTWRRQIFFPNFFKSAMEPGKIEAQIAQ------VGTAKVLKNILANRKPGPSCF 86
F + + W +I + F+SA E +I A++A+ +GT K+L++ + + G
Sbjct: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728
Query: 87 PEENAFGIDPENRV 100
EE+ FG+ + R+
Sbjct: 729 DEEHRFGVRHKERI 742
>sp|P96420|LEU1_MYCTU 2-isopropylmalate synthase OS=Mycobacterium tuberculosis GN=leuA
PE=1 SV=2
Length = 644
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 7 GMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQIFFPNFFKSAMEPGKIEAQIAQV 66
V +NG+ I+ G GP+ F+H ++ + + ++++ AM G +AQ A
Sbjct: 516 ATVKINGVETEISGSGNGPLAAFVHALADVGF----DVAVLDYYEHAMSAGD-DAQAAAY 570
Query: 67 GTAKVLKNILANRKPG 82
A V I + +PG
Sbjct: 571 VEASV--TIASPAQPG 584
>sp|Q9QUS6|TRIM1_MOUSE Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus GN=Mid2
PE=2 SV=2
Length = 705
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 156 PGPPTISEDAIAHLARETINLPSWLSEEEFNYYVTKFDQSGFTGGLNY---YRAID 208
P PP+I E+ + + +TI + W+S++EF+ + + FTG N+ Y ++D
Sbjct: 402 PNPPSIREE-LCTASHDTITV-HWISDDEFSISSYELQYTIFTGQANFISLYNSVD 455
>sp|P0A3G3|DHAA_RHOSO Haloalkane dehalogenase OS=Rhodococcus sp. GN=dhaA PE=1 SV=1
Length = 293
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>sp|P0A3G2|DHAA_RHORH Haloalkane dehalogenase OS=Rhodococcus rhodochrous GN=dhaA PE=1
SV=1
Length = 293
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>sp|P0A3G4|DHAA_PSEPV Haloalkane dehalogenase OS=Pseudomonas pavonaceae GN=dhaA PE=1
SV=1
Length = 293
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>sp|Q9ZER0|DHAA_MYCSX Haloalkane dehalogenase OS=Mycobacterium sp. (strain GP1)
GN=dhaAF PE=2 SV=1
Length = 307
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>sp|P59336|DHAA_RHOSD Haloalkane dehalogenase OS=Rhodococcus sp. (strain TDTM0003)
GN=dhaA PE=1 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 9 VGVNGIRMHIAEKG--EGPVVLFLHGFPELWYTWRRQI 44
V V G RMH + G +G VLFLHG P Y WR I
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNII 52
>sp|O84337|UVRA_CHLTR UvrABC system protein A OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=uvrA PE=3 SV=1
Length = 1786
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 99 RVTLPSWD--PNLKPV---ETSRAMYGDNFYICKFQEPG-VLEAGIAHIGSKLMIASSLT 152
+ LP+ D L PV E + A N + E +LE+ IG S T
Sbjct: 1001 KTPLPAVDKVTGLSPVIAIEKTSASRNSNHSVASALEISEMLESLFTRIGHPYSPISGDT 1060
Query: 153 TRRPGPPTISEDAIAHLAR--ETINLPSWLSEEEFNYYVTKFDQSGF 197
R P TI+E+ + H + TI +P + EEEF Y + Q GF
Sbjct: 1061 LRTISPETIAEELLTHYTKGYVTITVP-FPKEEEFFSYTQEMLQEGF 1106
>sp|Q938B4|DHAA_MYCS2 Haloalkane dehalogenase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=dhaA PE=3 SV=2
Length = 311
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 11 VNGIRMHIAEKGEGPVVLFLHGFPELWYTWR 41
+NG RM ++ G ++F HG P Y WR
Sbjct: 15 INGKRMAYIDEARGDAIVFQHGNPSSSYLWR 45
>sp|P29715|BPOA2_STRAU Non-haem bromoperoxidase BPO-A2 OS=Streptomyces aureofaciens
GN=bpoA2 PE=1 SV=3
Length = 278
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 1 MEEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQ 43
M I G I ++ + G G V+ +HGFP ++W RQ
Sbjct: 1 MPFITVGQENSTSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQ 43
>sp|O31168|PRXC_STRAU Non-heme chloroperoxidase OS=Streptomyces aureofaciens GN=cpo
PE=1 SV=1
Length = 278
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 1 MEEIKHGMVGVNGIRMHIAEKGEGPVVLFLHGFPELWYTWRRQ 43
M I G I ++ + G G V+ +HGFP ++W RQ
Sbjct: 1 MPFITVGQENSTSIDLYYEDHGAGQPVVLIHGFPLSGHSWERQ 43
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,841,045
Number of Sequences: 539616
Number of extensions: 3441561
Number of successful extensions: 6812
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6777
Number of HSP's gapped (non-prelim): 46
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)