BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046450
(392 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
GN=MTERF PE=1 SV=1
Length = 399
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 80 IQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGIS------GPDLAKIL 133
I+ L S G T+ + L++ PR S+ + + K +E+L++ G+S + KI+
Sbjct: 180 IKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPADFVRKII 238
Query: 134 CPYPELLSRSLENHIIPTFDFLKGVFQANGN----LVYALKQSIRVVNSDIQKRVVPNM- 188
P +L +S + + +FL+ F N L+ I +++D +R N+
Sbjct: 239 FKNPFILIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIK 297
Query: 189 NTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKE 228
L + G E + + ++ P + L + F + +D + E
Sbjct: 298 EKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME 337
Score = 39.3 bits (90), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 17/250 (6%)
Query: 82 LLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLS 141
L S+G +K IA++IS+YPR ++ PE L + + + S ++ IL PE
Sbjct: 110 FLLSKGASKEVIASIISRYPRAITRTPEN-LSKRWDLWRKIVTSDLEIVNILERSPESFF 168
Query: 142 RS-LENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNS--DIQKRVVPNMNTLR---AHG 195
RS ++ FL V L L + R ++ D+ K++V + H
Sbjct: 169 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHN 228
Query: 196 VPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRS-----MAMS-- 248
P + ++I P L+ + K ++ ++ F +S+ ++ + + +S
Sbjct: 229 DPADFVRKIIFKNPFILIQSTKRVKANIEFLRST-FNLNSEELLVLICGPGAEILDLSND 287
Query: 249 -SKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIA 307
++ ++ KE L S G +E+E + P + + KK +D + + + S I
Sbjct: 288 YARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQII 346
Query: 308 RYPNLLIGSL 317
P +L S+
Sbjct: 347 ENPRVLDSSI 356
>sp|Q5R9U8|MTERF_PONAB Transcription termination factor, mitochondrial OS=Pongo abelii
GN=MTERF PE=2 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 22/252 (8%)
Query: 82 LLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLS 141
L S+G +K IA++IS+YPR ++ PE L + + + S ++ IL PE
Sbjct: 110 FLLSKGASKEVIASIISRYPRAITRTPEN-LSKRWDLWRKIVTSDLEIVNILERSPESFF 168
Query: 142 RS-LENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNS--DIQKRVVPNMNTLRAHGVPE 198
RS ++ FL V L L + R ++ D+ K++V L+A G+
Sbjct: 169 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVE---FLQAAGLSL 225
Query: 199 PH-----IARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRS-----MAMS 248
H R I+L+ L+ + K ++ ++ F +S+ ++ + + +S
Sbjct: 226 GHNDPADFVRKIILKTLYLIQSTKRVKANIEFLRST-FNLNSEELLVLICGPGAEILDLS 284
Query: 249 ---SKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSD 305
++ ++ KE L S G +E+E + P + + KK +D + + + S
Sbjct: 285 NDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQ 343
Query: 306 IARYPNLLIGSL 317
I P +L S+
Sbjct: 344 IIENPRVLDSSI 355
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 80 IQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGIS------GPDLAKIL 133
I+ L S G T+ + L++ PR S+ + + K +E+L++ G+S + KI+
Sbjct: 180 IKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPADFVRKII 238
Query: 134 CPYPELLSRSLENHIIPTFDFLKGVFQANGN----LVYALKQSIRVVNSDIQKRVVPNM- 188
L+ + + +FL+ F N L+ I +++D +R N+
Sbjct: 239 LKTLYLIQST--KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIK 296
Query: 189 NTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKE 228
L + G E + + ++ P + L + F + +D + E
Sbjct: 297 EKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME 336
>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochondrial OS=Mus musculus
GN=Mterf PE=2 SV=1
Length = 379
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 105/250 (42%), Gaps = 17/250 (6%)
Query: 82 LLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLS 141
L S+G + I ++IS+YPR ++ PE L + + + S ++ IL PE
Sbjct: 92 FLLSKGASDKVIGSIISRYPRAITRTPES-LSKRWDLWRKIMASDLEIVNILERSPESFF 150
Query: 142 RS-LENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNS--DIQKRVVPNMNTLR---AHG 195
RS ++ FL V + L L + R ++ ++ K++V + H
Sbjct: 151 RSNNNLNLENNIKFLCSVGLTHKCLCRLLTNAPRTFSNSLNLNKQMVEFLQETGMSLGHN 210
Query: 196 VPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAV-----RSMAMSSK 250
P + ++I P L+ + K ++ ++ F + + +L + R + +S+
Sbjct: 211 DPRDFVRKIISKNPSILIQSTKRVKTNIEFLQST-FNLNKRDLLLLICGPGARILDLSND 269
Query: 251 AT---WQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIA 307
T + +E L+S G SE+E + + S KK +D + + + S I
Sbjct: 270 CTKKNYTNIRERLLSLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEE-KISASQII 328
Query: 308 RYPNLLIGSL 317
P +L S+
Sbjct: 329 ENPRILDSSI 338
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 58 LEKAISVSKLVKIQDTEKPNSSIQL-LTSRGFTKPQIATLISKYPRILSHDPEKVLKPKI 116
+EK + L+ D EK I L L G Q+ ++K I S D E LK ++
Sbjct: 164 IEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRV 222
Query: 117 EYLESLGISGPDLAKILCPYPELLSRSLE 145
YL+S S D+A+++ P LLS S+E
Sbjct: 223 AYLQSKNFSKTDIARMVKNAPFLLSFSVE 251
>sp|B8GJK8|EF2_METPE Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1
Length = 730
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 231 FEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMV 273
EP + + +R+ +S TW +++IL++ GW +DE + +
Sbjct: 493 LEPLDQVIVDLIRNGEVSMNQTWIERRDILVANGWEKDEAKNI 535
>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial OS=Rattus
norvegicus GN=Mterf PE=1 SV=1
Length = 374
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 104/251 (41%), Gaps = 17/251 (6%)
Query: 82 LLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLS 141
L S+G + I ++IS+YPR ++ PE L + + + S ++ IL PE
Sbjct: 87 FLLSKGASDKVIGSIISRYPRAITRTPES-LSKRWDLWREIMASDLEIVNILERSPESFF 145
Query: 142 RS-LENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNS--DIQKRVVPNMNTLR---AHG 195
RS ++ FL V + L L + R ++ ++ K++V + H
Sbjct: 146 RSNNNLNLENNIKFLCSVGLTHKCLCRLLTSAPRTFSNSLNLNKQMVEFLQETGISLGHN 205
Query: 196 VPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAV-----RSMAMSSK 250
P + ++I P L+ + K ++ ++ F + +L + R + +S+
Sbjct: 206 NPTDFVRKIISKNPSILIQSTKRVKTNIEFLQST-FNLDKEDLLLLICGPGARILDLSND 264
Query: 251 AT---WQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIA 307
T + K+ L+S G +E+E + + S KK +D + + + S I
Sbjct: 265 CTKRNYTNIKKRLLSLGCTEEEVQKFVLSYLNMIFLSEKKFNDKIDCLLEE-KISTSQIL 323
Query: 308 RYPNLLIGSLE 318
P +L S+
Sbjct: 324 ENPRVLDSSIH 334
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 212 LVLRAELFKNVVDVI---KEMGFEP-------SSKSFILAVRSMAMSSKATWQRKKEILI 261
L+L + K++ ++ K++G E + +IL A+ ++ + + K+
Sbjct: 166 LLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEALETRVAYLKSKK--- 222
Query: 262 SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSD----IARYPNLLIGSL 317
FG +E + R P ++ S +++ + FF N++GL + R+P LL G L
Sbjct: 223 -FGNAE--ITQMVSRAPYLLLFSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKL 279
Query: 318 E 318
E
Sbjct: 280 E 280
>sp|Q1LU51|PUR9_BAUCH Bifunctional purine biosynthesis protein PurH OS=Baumannia
cicadellinicola subsp. Homalodisca coagulata GN=purH
PE=3 SV=1
Length = 526
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 95 TLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRS-LENHIIPTFD 153
T++ Y R DP I + SL LC E+++R +E I PT D
Sbjct: 296 TILVAYQRAYETDPTSAFGGVIAFNRSLD---------LCTAQEIIARQFIEVIIAPTVD 346
Query: 154 FLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHG 195
L+ A K++IRV++S + +PN+N + +G
Sbjct: 347 -------QEALLILAKKKNIRVLSSGQWNKPIPNLNFRQVNG 381
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,706,256
Number of Sequences: 539616
Number of extensions: 5283799
Number of successful extensions: 15014
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 15001
Number of HSP's gapped (non-prelim): 20
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)