Query 046450
Match_columns 392
No_of_seqs 220 out of 1267
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 21:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 1.6E-52 5.3E-57 408.6 16.6 309 41-360 17-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 9E-48 3.1E-52 363.2 12.0 259 77-375 6-269 (270)
3 4fp9_B Mterf domain-containing 100.0 1.7E-35 5.9E-40 284.7 13.7 221 112-376 46-278 (335)
4 3mva_O Transcription terminati 100.0 5.7E-35 2E-39 284.6 14.4 276 74-358 17-310 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 5.1E-33 1.7E-37 262.2 12.9 212 44-297 6-224 (270)
6 4fp9_B Mterf domain-containing 99.9 2.8E-26 9.6E-31 220.6 15.3 182 75-302 45-228 (335)
7 4fzv_B Mterf domain-containing 99.2 1.3E-10 4.3E-15 95.9 11.4 181 148-365 33-221 (239)
8 4fzv_B Mterf domain-containing 98.5 9E-07 3.1E-11 73.0 10.7 148 112-301 33-182 (239)
9 1oqy_A HHR23A, UV excision rep 86.9 0.62 2.1E-05 44.8 4.9 36 128-174 248-283 (368)
10 4ae4_A Ubiquitin-associated pr 86.2 1.6 5.4E-05 34.8 6.2 102 41-157 6-113 (118)
11 3ff5_A PEX14P, peroxisomal bio 83.5 1.9 6.4E-05 29.2 4.6 20 114-133 32-51 (54)
12 1oqy_A HHR23A, UV excision rep 81.6 0.91 3.1E-05 43.6 3.5 148 46-210 171-351 (368)
13 3ff5_A PEX14P, peroxisomal bio 79.1 2.4 8.1E-05 28.7 3.9 26 252-277 29-54 (54)
14 2w84_A Peroxisomal membrane pr 71.0 5.6 0.00019 28.3 4.2 24 76-99 35-58 (70)
15 2w84_A Peroxisomal membrane pr 66.9 6.2 0.00021 28.1 3.8 26 252-277 34-59 (70)
16 4ae4_A Ubiquitin-associated pr 66.1 19 0.00066 28.4 7.1 97 78-192 10-112 (118)
17 3idw_A Actin cytoskeleton-regu 63.0 9 0.00031 27.4 4.0 51 47-98 6-59 (72)
18 2ooa_A E3 ubiquitin-protein li 60.6 7.7 0.00026 25.8 3.1 26 251-276 9-34 (52)
19 1ify_A HHR23A, UV excision rep 59.9 12 0.00042 24.4 4.1 39 252-297 7-45 (49)
20 2cos_A Serine/threonine protei 54.8 14 0.00047 24.8 3.6 40 256-302 12-51 (54)
21 4hpz_A Dtale2; DNA binding pro 54.4 1.2E+02 0.004 28.9 11.1 231 52-308 9-251 (463)
22 2g3q_A Protein YBL047C; endocy 54.0 10 0.00035 23.9 2.9 23 255-277 6-28 (43)
23 2knz_A Ubiquilin-4; cytoplasm, 53.3 15 0.0005 24.5 3.7 41 250-297 8-49 (53)
24 1z96_A DNA-damage, UBA-domain 53.2 16 0.00056 22.3 3.7 24 254-277 5-28 (40)
25 2oo9_A E3 ubiquitin-protein li 53.2 17 0.00057 23.5 3.6 25 252-276 3-27 (46)
26 3ugm_A TAL effector avrbs3/PTH 51.6 3.4 0.00012 42.6 0.3 113 50-170 418-536 (1047)
27 1veg_A NEDD8 ultimate buster-1 49.0 31 0.0011 25.4 5.1 40 254-300 30-69 (83)
28 2dak_A Ubiquitin carboxyl-term 48.4 26 0.00088 24.1 4.4 39 254-299 10-48 (63)
29 2d9s_A CBL E3 ubiquitin protei 47.4 21 0.00071 23.9 3.5 23 254-276 10-32 (53)
30 2juj_A E3 ubiquitin-protein li 45.0 23 0.0008 23.7 3.5 25 252-276 6-30 (56)
31 1wji_A Tudor domain containing 43.3 22 0.00075 24.6 3.4 38 254-298 10-47 (63)
32 1vg5_A RSGI RUH-014, rhomboid 41.8 19 0.00065 25.8 2.9 38 253-297 29-66 (73)
33 2jy5_A Ubiquilin-1; UBA, alter 41.1 18 0.00061 24.0 2.5 23 253-275 12-35 (52)
34 2dak_A Ubiquitin carboxyl-term 40.5 25 0.00087 24.2 3.4 40 41-85 7-46 (63)
35 2ef8_A C.ECOT38IS, putative tr 40.2 73 0.0025 22.1 6.2 43 262-307 32-74 (84)
36 2ekk_A UBA domain from E3 ubiq 39.2 23 0.00079 22.7 2.8 36 254-297 10-45 (47)
37 2cpw_A CBL-interacting protein 37.9 31 0.0011 23.9 3.5 36 256-297 22-57 (64)
38 2dag_A Ubiquitin carboxyl-term 37.3 47 0.0016 23.7 4.5 40 255-300 11-50 (74)
39 2knz_A Ubiquilin-4; cytoplasm, 37.2 64 0.0022 21.2 4.9 21 78-98 13-34 (53)
40 1wiv_A UBP14, ubiquitin-specif 36.6 32 0.0011 24.5 3.5 37 254-297 30-66 (73)
41 1wgn_A UBAP1, ubiquitin associ 36.0 35 0.0012 23.5 3.3 39 254-299 20-58 (63)
42 3e3v_A Regulatory protein RECX 32.5 2.2E+02 0.0074 23.7 10.3 108 147-276 51-162 (177)
43 2cp8_A NEXT to BRCA1 gene 1 pr 31.4 70 0.0024 21.4 4.2 17 217-233 7-23 (54)
44 1wr1_B Ubiquitin-like protein 31.3 1E+02 0.0034 20.8 5.1 13 253-265 17-29 (58)
45 1uxc_A FRUR (1-57), fructose r 31.0 39 0.0013 23.3 3.1 44 192-235 8-51 (65)
46 1vg5_A RSGI RUH-014, rhomboid 30.5 80 0.0027 22.5 4.7 19 46-65 32-50 (73)
47 3dfg_A Xcrecx, regulatory prot 30.4 2.2E+02 0.0076 23.2 11.6 109 147-278 50-160 (162)
48 2l8n_A Transcriptional repress 30.2 76 0.0026 21.9 4.5 44 189-235 14-57 (67)
49 2bwb_A Ubiquitin-like protein 29.2 53 0.0018 21.0 3.2 16 251-266 5-20 (46)
50 1dv0_A DNA repair protein HHR2 29.2 18 0.00062 23.4 1.0 22 255-276 6-27 (47)
51 1whc_A RSGI RUH-027, UBA/UBX 3 29.0 80 0.0027 21.7 4.4 41 41-85 7-47 (64)
52 2dah_A Ubiquilin-3; UBA domain 28.5 80 0.0027 20.9 4.2 15 219-233 9-23 (54)
53 1wj7_A Hypothetical protein (R 27.5 91 0.0031 23.9 4.8 43 248-297 34-77 (104)
54 2crn_A Ubash3A protein; compac 27.0 81 0.0028 21.7 4.1 43 40-86 6-48 (64)
55 1q08_A Zn(II)-responsive regul 24.8 55 0.0019 24.2 3.2 22 255-276 7-28 (99)
56 1uxc_A FRUR (1-57), fructose r 24.6 1.6E+02 0.0055 20.0 5.4 45 261-306 8-52 (65)
57 1wlq_C CDT1 protein; coiled-co 22.5 52 0.0018 28.4 2.9 68 147-217 31-98 (201)
58 2dai_A Ubadc1, ubiquitin assoc 22.0 81 0.0028 23.0 3.5 38 255-299 31-68 (83)
59 2ve7_C Kinetochore protein NUF 21.5 1.8E+02 0.0063 25.8 6.5 68 285-355 47-123 (250)
60 2dkl_A Trinucleotide repeat co 21.1 87 0.003 23.0 3.5 38 254-298 22-59 (85)
61 1g6u_A Domain swapped dimer; d 20.8 1.5E+02 0.0053 18.2 3.9 22 252-273 4-25 (48)
62 1vej_A Riken cDNA 4931431F19; 20.6 1.9E+02 0.0067 20.5 5.2 14 218-231 28-41 (74)
63 1ixs_A Holliday junction DNA h 20.4 1.1E+02 0.0039 20.8 3.8 26 252-277 16-41 (62)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.6e-52 Score=408.58 Aligned_cols=309 Identities=18% Similarity=0.235 Sum_probs=276.8
Q ss_pred CCCCchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHH
Q 046450 41 DERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLE 120 (392)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~ 120 (392)
.++..+|+|| .+||++.++|.++.+++++.++++++++++||+++|++++++++++.++|.+|.++++ ++.|+++||+
T Consensus 17 ~~~~~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~ 94 (343)
T 3mva_O 17 LKNEDLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWR 94 (343)
T ss_dssp ---CCHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHT
T ss_pred cccHHHHHHH-HHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHH
Confidence 3455788999 7999999999999999988889999999999999999999999999999999999976 6999999999
Q ss_pred hCCCCchhHHHhhhcCccc-cccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCC--
Q 046450 121 SLGISGPDLAKILCPYPEL-LSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVP-- 197 (392)
Q Consensus 121 ~lGls~~~l~~il~~~P~l-L~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~-- 197 (392)
++|++++++++++.++|++ ++.+.++++.|+++||+++|++.++|.+++.++|++|++++++ +++++++|+++|++
T Consensus 95 ~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g 173 (343)
T 3mva_O 95 KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLG 173 (343)
T ss_dssp TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcC
Confidence 9999999999999999995 5554435899999999999999999999999999999999998 59999999987764
Q ss_pred ----chhhhcccccCCceeeechhhHHHHHHHHH-HhCCCCCchh--HHHHHHHHHhcCHHHHHHHHHHHH----HcCCC
Q 046450 198 ----EPHIARLIMLQPPSLVLRAELFKNVVDVIK-EMGFEPSSKS--FILAVRSMAMSSKATWQRKKEILI----SFGWS 266 (392)
Q Consensus 198 ----~~~i~~ll~~~P~il~~~~~~~~~~v~~L~-~lG~~~~~~~--~~~~~~~~~~~s~~~l~~kv~fL~----~lG~s 266 (392)
.+.|.+++.++|.+++.+.++++++++||+ ++|+++++.. +..-++.++..+.+.|+++++|+. ++||+
T Consensus 174 ~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s 253 (343)
T 3mva_O 174 HNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCT 253 (343)
T ss_dssp CSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCC
T ss_pred CCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCC
Confidence 678999999999999999889999999999 5999986532 112233456677888999997776 69999
Q ss_pred HHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccccCCCCccchhHHHHHHHHHcCCCCCCcccc--
Q 046450 267 EDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVS-- 344 (392)
Q Consensus 267 ~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~~sle~~l~pR~~~l~~L~~~G~~~~~~~l~-- 344 (392)
.+|+..|+.++|++|++|.++|+++++||.+ ||++.++|+++|++|+||+| ||+|||. +|.++|+ ++++.
T Consensus 254 ~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~~~ 325 (343)
T 3mva_O 254 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTLNI 325 (343)
T ss_dssp HHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSSCG
T ss_pred HHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCCcc
Confidence 9999999999999999999999999999999 99999999999999999999 9999995 6889998 55666
Q ss_pred cccccChHHHHHHHhc
Q 046450 345 LALFVTKEVFERRFVT 360 (392)
Q Consensus 345 ~~l~~s~~~F~~~~v~ 360 (392)
++|++||++|.++|.+
T Consensus 326 ~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 326 TLLSWSKKRYEAKLKK 341 (343)
T ss_dssp GGGGSCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHhc
Confidence 9999999999999964
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=9e-48 Score=363.18 Aligned_cols=259 Identities=17% Similarity=0.269 Sum_probs=238.9
Q ss_pred hhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHH
Q 046450 77 NSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLK 156 (392)
Q Consensus 77 ~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~ 156 (392)
.+++++|.++|++.+++.+....+|.+|.+++++++.|+++||.++|++++++++++.++|++|++++++ +.|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 4789999999999999987777777779999998999999999999999999999999999999999996 999999999
Q ss_pred hhccCCchHHHHHhhCcceeccCcccchhhhHHHH-HHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCc
Q 046450 157 GVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL-RAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSS 235 (392)
Q Consensus 157 ~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L-~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~ 235 (392)
++|+++++|.+++.++|++|++++++ ++++++|| +++|++.+++.+++.++|++++.+.+
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e------------------ 145 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE------------------ 145 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH------------------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH------------------
Confidence 99999999999999999999999996 99999999 58999999999999999999987654
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccc
Q 046450 236 KSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLI 314 (392)
Q Consensus 236 ~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~ 314 (392)
.++++++++. ++||+.+||.+|+.++|+++++|.++++++++||.++||++.++|+++|++|+
T Consensus 146 ----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~ 209 (270)
T 3m66_A 146 ----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFN 209 (270)
T ss_dssp ----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred ----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence 3456777664 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchhHHHHHHHHHcCCCCCC---cccccccccChHHHHHHHhccCCCChHHHHHHhcc
Q 046450 315 GSLEKKVLPRWSVLQVLMSKNLLKKD---VNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGG 375 (392)
Q Consensus 315 ~sle~~l~pR~~~l~~L~~~G~~~~~---~~l~~~l~~s~~~F~~~~v~~~~e~~~~~~~y~~~ 375 (392)
||+| ||+|||.++++|.++|+.+++ +++.+++.+||++|+++|++.++|+ .++|.++
T Consensus 210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ee---y~~f~k~ 269 (270)
T 3m66_A 210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD---FEKFLKT 269 (270)
T ss_dssp SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHH---HHHHHTT
T ss_pred CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHH---HHHHHhc
Confidence 9999 999999999999999997654 6677899999999999999999665 6666553
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=284.68 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=187.9
Q ss_pred hhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHH
Q 046450 112 LKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL 191 (392)
Q Consensus 112 l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L 191 (392)
+...+..|.++|+++++|++++..+|.++.. ++.+.+.||..+|++.++|+++|.++|++|++++++ ++++++||
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL 120 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence 5667778888888888888888888888753 567888888888988888999999999999888875 99999999
Q ss_pred HHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHH
Q 046450 192 RAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEF 270 (392)
Q Consensus 192 ~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei 270 (392)
+++|++.+++.+++.++|++|+.+.+ .+..++.+|. ++||+.++|
T Consensus 121 ~~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev 166 (335)
T 4fp9_B 121 QKLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQV 166 (335)
T ss_dssp HHTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHH
T ss_pred HHcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHH
Confidence 88999998999999999988876644 4455666776 899999999
Q ss_pred HHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccccCCCCccchhHHHHHHHHHcCCCC----------CC
Q 046450 271 RMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLK----------KD 340 (392)
Q Consensus 271 ~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~~sle~~l~pR~~~l~~L~~~G~~~----------~~ 340 (392)
..||.++|+||.+|.++|+++++||.++||+++++|++ |++|+||++ ||+|||.+ |...|..+ .+
T Consensus 167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~f---L~~lG~~q~~~~k~~~~~~n 241 (335)
T 4fp9_B 167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIY---LERLGRYQTPDKKGQTQIPN 241 (335)
T ss_dssp HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHH---HHHHTSCCCCCSSSCCSSCC
T ss_pred HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHH---HHHcCCccCCCcccccCCCC
Confidence 99999999999999999999999999999999999997 999999999 99999986 55556532 35
Q ss_pred cccccccccChHHHHHHHhccCCCC-hHHHHHHhccc
Q 046450 341 VNVSLALFVTKEVFERRFVTSYMHE-PEVMTAYQGGL 376 (392)
Q Consensus 341 ~~l~~~l~~s~~~F~~~~v~~~~e~-~~~~~~y~~~~ 376 (392)
+++..++..||++|+.++++.+.++ ..+.+.+.+..
T Consensus 242 psL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~e~ 278 (335)
T 4fp9_B 242 PLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREE 278 (335)
T ss_dssp CCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence 6799999999999999999999877 66666665433
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.7e-35 Score=284.56 Aligned_cols=276 Identities=17% Similarity=0.247 Sum_probs=234.8
Q ss_pred CChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHH
Q 046450 74 EKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFD 153 (392)
Q Consensus 74 ~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~ 153 (392)
...++++++|.++|++.+ +++.++|+++..++++ ..+.++||+++|++.+++++++.++|.+|+++.+ ++.|+++
T Consensus 17 ~~~~~~v~~L~s~Gl~~~---~~~~~~p~l~~~s~~~-~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~ 91 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDID---MARKRQPGVFHRMITN-EQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWD 91 (343)
T ss_dssp ---CCHHHHHHHHTCCHH---HHHHHCGGGGGCSCCC-HHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHH
T ss_pred cccHHHHHHHHHcCCCHH---HHHHhCchhhccCccc-HHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHH
Confidence 456789999999999955 4577899999999875 8999999999999999999999999999999965 8999999
Q ss_pred HHHhhccCCchHHHHHhhCcce-eccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCC
Q 046450 154 FLKGVFQANGNLVYALKQSIRV-VNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFE 232 (392)
Q Consensus 154 fL~~lg~~~~~i~~il~~~P~l-L~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~ 232 (392)
||+++|++++++.+++.++|++ ++.+.++++.|+++||+++|++.++|++++.++|++++.+.+++++++++++++|++
T Consensus 92 fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~ 171 (343)
T 3mva_O 92 LWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLS 171 (343)
T ss_dssp HHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCC
Confidence 9999999999999999999994 555544479999999999999999999999999999999999889999999988875
Q ss_pred CCc---hh----HHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCC-ccccccHHHHHHHHHHHHH---hhC
Q 046450 233 PSS---KS----FILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQP-LFMMASAKKIRKLMDFFVN---KIG 300 (392)
Q Consensus 233 ~~~---~~----~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P-~iL~~s~e~L~~~~~fL~~---~~G 300 (392)
.+. .. ++...+.++..++++++++++||+ ++|++.+++..++.+.| .++.++.+.++++++|+.+ ++|
T Consensus 172 ~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG 251 (343)
T 3mva_O 172 LGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLG 251 (343)
T ss_dssp TTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTT
T ss_pred cCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcC
Confidence 331 11 222334456677999999999999 69999999999999865 7999999999999999987 689
Q ss_pred CChhhH----hcCCcccccCCCCccchhHHHHHHHHHcCCCCCC-cccccccccChHHHHHHH
Q 046450 301 LEPSDI----ARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKD-VNVSLALFVTKEVFERRF 358 (392)
Q Consensus 301 ~~~~~i----~~~P~lL~~sle~~l~pR~~~l~~L~~~G~~~~~-~~l~~~l~~s~~~F~~~~ 358 (392)
++.+++ .++|.+|++|.+ +|++++++ |...|+...+ ...+.++.+|-++-..|+
T Consensus 252 ~s~~ev~~~v~~~P~il~~s~~-~l~~k~~f---l~~mg~~~~~i~~~P~~l~~sleri~~R~ 310 (343)
T 3mva_O 252 CTEEEVQKFVLSYPDVIFLAEK-KFNDKIDC---LMEENISISQIIENPRVLDSSISTLKSRI 310 (343)
T ss_dssp CCHHHHHHHHHTCGGGGGSCHH-HHHHHHHH---HHTTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred CCHHHHHHHHHhCCchhcccHH-HHHHHHHH---HHHcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence 999886 699999999999 59999876 5558885432 345788888877766665
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=5.1e-33 Score=262.20 Aligned_cols=212 Identities=19% Similarity=0.250 Sum_probs=192.2
Q ss_pred CchHHHhHhhcCCCHHHHHhhccc----ccccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHH
Q 046450 44 SPTVSFLTHSCGLSLEKAISVSKL----VKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYL 119 (392)
Q Consensus 44 ~~~v~~L~~~~Gls~~~~~~i~~~----~~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL 119 (392)
+.+++||. ++|++.+++.+.... +.++...++.++++||+++|++++++++++.++|.+|.+++++ +.|+++||
T Consensus 6 s~~l~~L~-~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKLV-LLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHH-HTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHHH-HcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 46889995 899999999886433 2344446899999999999999999999999999999999998 99999999
Q ss_pred HhCCCCchhHHHhhhcCccccccccccchhhHHHHH-HhhccCCchHHHHHhhCcceeccCcccchhhhHHHH-HHCCCC
Q 046450 120 ESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFL-KGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL-RAHGVP 197 (392)
Q Consensus 120 ~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL-~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L-~~lGv~ 197 (392)
+++|++.+++++++.++|++|+++++ ++.|+++|| +++|++.+++.+++.++|.+++++.+. ++++++++ +++|++
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFK 161 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCC
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCC
Confidence 99999999999999999999999998 599999999 589999999999999999999999986 99999976 689999
Q ss_pred chhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHh
Q 046450 198 EPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKR 276 (392)
Q Consensus 198 ~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~ 276 (392)
.++|.+++.++|.+++.+. +++++|++||. ++|++.++| .+
T Consensus 162 ~~ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~i----~~ 203 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHII----VK 203 (270)
T ss_dssp HHHHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHHH----HH
T ss_pred HHHHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHHH----Hh
Confidence 9999999999999987654 56677888887 799999886 49
Q ss_pred CCccccccHHHHHHHHHHHHH
Q 046450 277 QPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 277 ~P~iL~~s~e~L~~~~~fL~~ 297 (392)
+|++|++|.|+|+|++.|+..
T Consensus 204 ~P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 204 FPQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp CGGGGGSCHHHHHHHHHHHHH
T ss_pred CchHhhCCHHHHHHHHHHHHH
Confidence 999999999999999999987
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=220.59 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=168.1
Q ss_pred ChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHH
Q 046450 75 KPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDF 154 (392)
Q Consensus 75 ~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~f 154 (392)
+++.++..|.++||++++|++++..+|.++.. ++.+++.||.++|++.++|.++|.++|++|+.+++ +|.|+++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 56788999999999999999999999999754 48899999999999999999999999999999997 79999999
Q ss_pred HHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHH-HCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCC
Q 046450 155 LKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLR-AHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEP 233 (392)
Q Consensus 155 L~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~-~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~ 233 (392)
|+++|++.+++.+++.++|++|+++.+. +..++.+|+ ++|++.++|..|+.++|.+|..+
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S------------------ 180 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED------------------ 180 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC------------------
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC------------------
Confidence 9999999999999999999999999986 999999996 69999999999999999999765
Q ss_pred CchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCC
Q 046450 234 SSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLE 302 (392)
Q Consensus 234 ~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~ 302 (392)
.+++++|++||. +||++.++|. + |++|+||.++|+++..||.. +|.-
T Consensus 181 ----------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~~ 228 (335)
T 4fp9_B 181 ----------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGRY 228 (335)
T ss_dssp ----------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTSC
T ss_pred ----------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCCc
Confidence 456778889998 8999999985 3 99999999999999999998 8873
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.20 E-value=1.3e-10 Score=95.94 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=136.7
Q ss_pred hhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechhhHHHHHHHHH
Q 046450 148 IIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIK 227 (392)
Q Consensus 148 l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~ 227 (392)
+...+.-+--+|+.++-++-++.+.|+++...+.. ++.+-.+|+.+|+.+..+.+++--||.++.+....+
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdi-------- 103 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDI-------- 103 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHH--------
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhH--------
Confidence 33344455556777777777777777777777665 777777777777777777777777777776654333
Q ss_pred HhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhH
Q 046450 228 EMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDI 306 (392)
Q Consensus 228 ~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i 306 (392)
...+..|+ ++-|+.+++.+++..||.++.-+...++-++.|-.-.||...-+|
T Consensus 104 --------------------------ndtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdi 157 (239)
T 4fzv_B 104 --------------------------NDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDI 157 (239)
T ss_dssp --------------------------HHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHH
T ss_pred --------------------------hHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcch
Confidence 34455666 688999999999999999999999999999888887899999999
Q ss_pred hcCCcccccCCCCccchhHHHHHHHHH------cCCC-CCCcccccccccChHHHHHHHhccCCCC
Q 046450 307 ARYPNLLIGSLEKKVLPRWSVLQVLMS------KNLL-KKDVNVSLALFVTKEVFERRFVTSYMHE 365 (392)
Q Consensus 307 ~~~P~lL~~sle~~l~pR~~~l~~L~~------~G~~-~~~~~l~~~l~~s~~~F~~~~v~~~~e~ 365 (392)
++ ..+|.||+. .|+.||-|++.|-. +|-. ..++-+.+++..|+.+|..+-....-|+
T Consensus 158 vk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsvee 221 (239)
T 4fzv_B 158 VK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEE 221 (239)
T ss_dssp HH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHH
T ss_pred hH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHH
Confidence 87 479999999 79999987655422 1211 1245578999999999999987776554
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.49 E-value=9e-07 Score=73.05 Aligned_cols=148 Identities=15% Similarity=0.185 Sum_probs=100.6
Q ss_pred hhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHH
Q 046450 112 LKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL 191 (392)
Q Consensus 112 l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L 191 (392)
+...+.-+.-+|+.++-+.-++.+.|++|..++. .+..+-.||+.+|+....+.+++-.||.++++...+ +...+..|
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrll 110 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLL 110 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHHH
Confidence 4444445555677777777777777777777765 577777777777777777777777777777777654 77777777
Q ss_pred HH-CCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHH
Q 046450 192 RA-HGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDE 269 (392)
Q Consensus 192 ~~-lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~e 269 (392)
++ |-++-.++.+++..||.++.-+...++- |+.|-- ++|+...+
T Consensus 111 kekclftvqqvtkilhscpsvlredlgqley----------------------------------kfqyayfrmgikhpd 156 (239)
T 4fzv_B 111 KEKCLFTVQQVTKILHSCPSVLREDLGQLEY----------------------------------KFQYAYFRMGIKHPD 156 (239)
T ss_dssp HHHSCCCHHHHHHHHHHCGGGGTSCTTHHHH----------------------------------HHHHHHHTSCCCHHH
T ss_pred HHhHHhhHHHHHHHHHhCcHHHHHHHhhhhh----------------------------------hHhHHHHHccCCCcc
Confidence 75 7777777777777777777554443333 333333 56766666
Q ss_pred HHHHHHhCCccccccHHHHHHHHHHHHHhhCC
Q 046450 270 FRMVFKRQPLFMMASAKKIRKLMDFFVNKIGL 301 (392)
Q Consensus 270 i~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~ 301 (392)
|. ....+.||..+++.+--||.. +|.
T Consensus 157 iv-----kseylqysltkikqrhiyler-lgr 182 (239)
T 4fzv_B 157 IV-----KSEYLQYSLTKIKQRHIYLER-LGR 182 (239)
T ss_dssp HH-----HTTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred hh-----HHHHHHHHHHHHHHHHhHHHH-hcc
Confidence 53 235677888888888888876 664
No 9
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=86.85 E-value=0.62 Score=44.80 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=21.2
Q ss_pred hHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcc
Q 046450 128 DLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIR 174 (392)
Q Consensus 128 ~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~ 174 (392)
++..+|..+|.+|.. +|+.+|-+.-++..+|..+|.
T Consensus 248 ~lR~~vq~nP~~l~~-----------~lq~l~~~nP~l~~~I~~n~~ 283 (368)
T 1oqy_A 248 NMRQVIQQNPALLPA-----------LLQQLGQENPQLLQQISRHQE 283 (368)
T ss_dssp HHHHSTTTCTTHHHH-----------HHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHH-----------HHHHHHhhCHHHHHHHHHCHH
Confidence 456666666665432 455566666666666665554
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=86.15 E-value=1.6 Score=34.78 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=67.2
Q ss_pred CCCCchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhh------hCCCChHHHHHHHHhCCceeccCcCCchhH
Q 046450 41 DERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLT------SRGFTKPQIATLISKYPRILSHDPEKVLKP 114 (392)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~------~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p 114 (392)
++....|..|+ ++||+...+.++..... ++.+..++||- +.|+++.++...+..+..--.. .. .-..
T Consensus 6 ~~e~~~v~~l~-~MGFp~~~~~kAl~~~g----~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~-~~-~~~~ 78 (118)
T 4ae4_A 6 PSERQCVETVV-NMGYSYECVLRAMKAAG----ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK-MM-EFLQ 78 (118)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH-HH-HHHH
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHHHHC----cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc-cc-cCHH
Confidence 33445677885 78999999998865422 26777777775 4688888887777654211000 00 1224
Q ss_pred HHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHh
Q 046450 115 KIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKG 157 (392)
Q Consensus 115 ~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~ 157 (392)
.+.-|.++|++.+.+.+.+..+. +++...++||..
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 57788899999988888886543 367777777754
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=83.53 E-value=1.9 Score=29.20 Aligned_cols=20 Identities=10% Similarity=0.393 Sum_probs=8.6
Q ss_pred HHHHHHHhCCCCchhHHHhh
Q 046450 114 PKIEYLESLGISGPDLAKIL 133 (392)
Q Consensus 114 p~v~fL~~lGls~~~l~~il 133 (392)
.+++||++.|++.++|...+
T Consensus 32 ~K~~FL~sKGLt~~EI~~Al 51 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEEIDLAF 51 (54)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34444444444444444333
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=81.63 E-value=0.91 Score=43.59 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=73.6
Q ss_pred hHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhhCCCChH------------------------HHHHHHHhCC
Q 046450 46 TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKP------------------------QIATLISKYP 101 (392)
Q Consensus 46 ~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~lGl~~~------------------------~i~~ll~~~P 101 (392)
+|.-|+ ++||+++++.++.+. +.++++..++||-+ |+.+. +--..++.+|
T Consensus 171 ~i~~l~-~MGf~~~~~~~AL~a----~~nn~~~A~e~L~~-gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~p 244 (368)
T 1oqy_A 171 MLTEIM-SMGYERERVVAALRA----SYNNPHRAVEYLLT-GIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQP 244 (368)
T ss_dssp HHHHHH-TTTCCSHHHHHHHHH----SCSSTTHHHHTTTT-SSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTTHHHHHSH
T ss_pred HHHHHH-HcCCCHHHHHHHHHH----cCCCHHHHHHHHHh-CCCcccccccCCccccccccccCccccccchHHHHhcCh
Confidence 577885 789999999998653 22467777888853 33321 0012233333
Q ss_pred ce------eccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhc---cCCchHHHHHhhC
Q 046450 102 RI------LSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVF---QANGNLVYALKQS 172 (392)
Q Consensus 102 ~l------L~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg---~~~~~i~~il~~~ 172 (392)
++ +..+|+- |. .+|+.+|-+..++..+|..+|.-+..-+......- .+.+ .....+... .-.
T Consensus 245 qf~~lR~~vq~nP~~-l~---~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~----~~~~~~~~~~~~~~~~-~~~ 315 (368)
T 1oqy_A 245 QFQNMRQVIQQNPAL-LP---ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGEL----ADISDVEGEVGAIGEE-APQ 315 (368)
T ss_dssp HHHHHHHSTTTCTTH-HH---HHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCS----CSSCCCSSSSCCCSCC-CTT
T ss_pred HHHHHHHHHHhChHH-HH---HHHHHHHhhCHHHHHHHHHCHHHHHHHHcCccccc----cccccccccccccccc-CCc
Confidence 21 2222221 11 35556788888888888888763221111000000 0000 000000000 001
Q ss_pred cceeccCcccchhhhHHHHHHCCCCchhhhcccccCCc
Q 046450 173 IRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPP 210 (392)
Q Consensus 173 P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~ 210 (392)
+..+..+.+ =+..|+.|.++|++...+.+.+..|-.
T Consensus 316 ~~~i~~t~e--e~eaI~rL~~mGF~~~~a~~al~a~~~ 351 (368)
T 1oqy_A 316 MNYIQVTPQ--EKEAIERLKALGFPESLVIQAYFACEK 351 (368)
T ss_dssp CSSCCCCTT--THHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred cccccCCCc--CHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 122233332 246778888889998888777766653
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=79.09 E-value=2.4 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhC
Q 046450 252 TWQRKKEILISFGWSEDEFRMVFKRQ 277 (392)
Q Consensus 252 ~l~~kv~fL~~lG~s~~ei~~~i~~~ 277 (392)
-+..|++||++=|++.+||..++.+.
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47889999999999999999888763
No 14
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=70.97 E-value=5.6 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=13.3
Q ss_pred hhhHHHhhhhCCCChHHHHHHHHh
Q 046450 76 PNSSIQLLTSRGFTKPQIATLISK 99 (392)
Q Consensus 76 ~~~~l~~L~~lGl~~~~i~~ll~~ 99 (392)
+..+++||++.|++.++|...+.+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445555555555555555555554
No 15
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=66.91 E-value=6.2 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhC
Q 046450 252 TWQRKKEILISFGWSEDEFRMVFKRQ 277 (392)
Q Consensus 252 ~l~~kv~fL~~lG~s~~ei~~~i~~~ 277 (392)
-+..|++||++=|++.+||..++.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 37789999999999999999988874
No 16
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=66.13 E-value=19 Score=28.36 Aligned_cols=97 Identities=8% Similarity=0.041 Sum_probs=58.9
Q ss_pred hHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHH------hCCCCchhHHHhhhcCccccccccccchhhH
Q 046450 78 SSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLE------SLGISGPDLAKILCPYPELLSRSLENHIIPT 151 (392)
Q Consensus 78 ~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~------~lGls~~~l~~il~~~P~lL~~~~~~~l~p~ 151 (392)
..++-|.++||+...+.+.+..+-. + ....++||. +.|++..++...+..+..--... ..-...
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~----~----~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~ 79 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGA----N----IEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQL 79 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCS----C----HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCc----C----HHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHH
Confidence 4677888999999988888776531 2 444556553 56777766666665432100000 011235
Q ss_pred HHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHH
Q 046450 152 FDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLR 192 (392)
Q Consensus 152 v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~ 192 (392)
+.-|.++|++.+.+.+.+..+- +++..-+++|.
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~ 112 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLM 112 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 6677788888888877776532 34666666664
No 17
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=63.01 E-value=9 Score=27.38 Aligned_cols=51 Identities=14% Similarity=0.386 Sum_probs=31.0
Q ss_pred HHHhHhhcCCCHHHHHhhcccc---cccCCCChhhHHHhhhhCCCChHHHHHHHH
Q 046450 47 VSFLTHSCGLSLEKAISVSKLV---KIQDTEKPNSSIQLLTSRGFTKPQIATLIS 98 (392)
Q Consensus 47 v~~L~~~~Gls~~~~~~i~~~~---~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~ 98 (392)
++|.+ ++|++.....+.+..+ .....--++-.-+.|+++|+...||-++++
T Consensus 6 f~FFl-~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 6 FEFFL-NCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHH-HTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHH-HcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 45654 7799888888776544 111111122235678888888777776655
No 18
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=60.65 E-value=7.7 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHh
Q 046450 251 ATWQRKKEILISFGWSEDEFRMVFKR 276 (392)
Q Consensus 251 ~~l~~kv~fL~~lG~s~~ei~~~i~~ 276 (392)
+.+...|+-|.++||+++++.+.+..
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44557888899999999998877665
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.89 E-value=12 Score=24.45 Aligned_cols=39 Identities=5% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHH
Q 046450 252 TWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 252 ~l~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~ 297 (392)
.-..+++-|.++||+++++.+.++.+-. ++...++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 3466788889999999999888876432 34555677765
No 20
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.81 E-value=14 Score=24.79 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCC
Q 046450 256 KKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLE 302 (392)
Q Consensus 256 kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~ 302 (392)
.++-|.++||+++-+...+..- .-..|++.++||.+ |+++
T Consensus 12 mlq~L~eMGFd~erae~Alk~T------g~~Gle~AmewL~k-~~~~ 51 (54)
T 2cos_A 12 MLQELVNAGCDQEMAGRALKQT------GSRSIEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH------TSCCHHHHHHHHHH-HSCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------CcccHHHHHHHHHH-hcCC
Confidence 3455666777766555444331 11137777777776 6654
No 21
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=54.44 E-value=1.2e+02 Score=28.90 Aligned_cols=231 Identities=16% Similarity=0.202 Sum_probs=131.1
Q ss_pred hhcCCCHHHHHhhcccccccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHH-h-CCCCchhH
Q 046450 52 HSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLE-S-LGISGPDL 129 (392)
Q Consensus 52 ~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~-~-lGls~~~l 129 (392)
..+|.|.++++++-.+.. ..+..--+-|.+.||+..||.++-+ +|.-|.. +.-++.-|. - -+++.++|
T Consensus 9 ~~lgys~~q~~k~k~~~~----s~va~~h~~l~~~g~t~~~i~~is~-~~~al~~-----va~~y~~l~aal~~lt~~~i 78 (463)
T 4hpz_A 9 RTLGYSQQQQEKIKPKVR----STVAQHHEALVGHGFTHAHIVALSQ-HPAALGT-----VAVKYQDMIAALPEATHEAI 78 (463)
T ss_dssp GGGTCCHHHHHHHCGGGH----HHHHHHHHHHHHTTCCHHHHHHHTT-STHHHHH-----HHTTHHHHHHHSTTCCHHHH
T ss_pred HHhccCHHHHHHhhHHHH----HHHHHHHHHHHhcCCCHHHHHHhhc-cHhHHHH-----HHHhhHHHHhhccccCHHHH
Confidence 478999999999865432 1233445567789999999987644 5554332 322333343 2 47888888
Q ss_pred HHhhhcCccccccccccchhhHHHHHHh--hccCCchHHHHHhhCcceeccCcccchhhhHHHHHH--CCCCchhhhccc
Q 046450 130 AKILCPYPELLSRSLENHIIPTFDFLKG--VFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRA--HGVPEPHIARLI 205 (392)
Q Consensus 130 ~~il~~~P~lL~~~~~~~l~p~v~fL~~--lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~--lGv~~~~i~~ll 205 (392)
..+-..+-..... + .+.+...-|.. ++++.++|..+-.+ -.- .-++ .+.+....|.. ++++++++.++-
T Consensus 79 V~ia~~~~g~~Al--~-a~~~~~~~L~~~p~~l~~~qiv~IA~~-Gg~--~Ale-av~~~~~~L~~apl~Lsp~qvVaIA 151 (463)
T 4hpz_A 79 VGVGKQWSGACAL--E-ALLTVAGELRGPPLQLDTGQLLKIAKR-GGV--TAVE-VHHTWRNALTGAPLNLTPDQVVAIA 151 (463)
T ss_dssp HHHHTSTTTTHHH--H-HHHHHHHHHHSTTTCCCHHHHHHHHHH-HHH--HHHH-HHHHTHHHHHSTTTCCCHHHHHHHH
T ss_pred HHHHhccchHHHH--H-HHHHHHHHhhcCccCCCHHHHHHHHhh-CcH--HHHH-HHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 8887766543322 1 33444444544 47788888877652 100 0011 13333344443 799999987765
Q ss_pred ccCCceeeechhhHHHHHHHHHH-hCCCCCchhHHHHHHHHHhcC----HHHHHHHHHHHH-HcCCCHHHHHHHHHhCCc
Q 046450 206 MLQPPSLVLRAELFKNVVDVIKE-MGFEPSSKSFILAVRSMAMSS----KATWQRKKEILI-SFGWSEDEFRMVFKRQPL 279 (392)
Q Consensus 206 ~~~P~il~~~~~~~~~~v~~L~~-lG~~~~~~~~~~~~~~~~~~s----~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~ 279 (392)
...-.- --.+.+......|.. .|+++++..-+.. ... -+.+......++ ..|++.++|..+-...-.
T Consensus 152 sn~GGk--qALeaV~~llpvL~~a~~Ls~~qVVaIAs-----n~GGkQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GG 224 (463)
T 4hpz_A 152 SNIGGK--QALETVQRLLPVLCQDHGLTPQQVVAIAS-----NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 224 (463)
T ss_dssp SSTTHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHT-----STTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTH
T ss_pred hcCccH--HHHHHHHHHHHHHhhhcCCCHHHHHHHhh-----cCchHHHHHHHHHHHHHhhccccCCHHHHHHHhhcccc
Confidence 432210 002334444555553 6777654322110 011 245666777777 489999999866543110
Q ss_pred cccccHHHHHHHHHHHHHhhCCChhhHhc
Q 046450 280 FMMASAKKIRKLMDFFVNKIGLEPSDIAR 308 (392)
Q Consensus 280 iL~~s~e~L~~~~~fL~~~~G~~~~~i~~ 308 (392)
= --.|.++.-..-|....|++.++|+.
T Consensus 225 k--QALeaV~~llpvl~~~~gls~aqVVa 251 (463)
T 4hpz_A 225 K--QALETVQRLLPVLCQDHGLTPQQVVA 251 (463)
T ss_dssp H--HHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred H--HHHHHHHhhhhhhhhhccCCHHHHHH
Confidence 0 01344555566666557999999853
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=53.99 E-value=10 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Q 046450 255 RKKEILISFGWSEDEFRMVFKRQ 277 (392)
Q Consensus 255 ~kv~fL~~lG~s~~ei~~~i~~~ 277 (392)
.+++-|.++||+++++.+.+..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 56778888999998888777763
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=53.31 E-value=15 Score=24.48 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHhCCccccccHHHHHHHHHHHHH
Q 046450 250 KATWQRKKEILISFGW-SEDEFRMVFKRQPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 250 ~~~l~~kv~fL~~lG~-s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~ 297 (392)
++....+++-|.+||| +++.+.+.+..+- .++...++||.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG-------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT-------SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 4455666777777777 6666555544321 134555666654
No 24
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=53.17 E-value=16 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQ 277 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~ 277 (392)
..+++-|.++||+.+++.+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 346777888899988887766654
No 25
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=53.15 E-value=17 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Q 046450 252 TWQRKKEILISFGWSEDEFRMVFKR 276 (392)
Q Consensus 252 ~l~~kv~fL~~lG~s~~ei~~~i~~ 276 (392)
.+...|+-|.++||+.+++.+.+..
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3567788899999999998877654
No 26
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=51.56 E-value=3.4 Score=42.56 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=50.3
Q ss_pred hHhhcCCCHHHHHhhcccccc-cCCCChhhHHHhhh-hCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHH-hCCCCc
Q 046450 50 LTHSCGLSLEKAISVSKLVKI-QDTEKPNSSIQLLT-SRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLE-SLGISG 126 (392)
Q Consensus 50 L~~~~Gls~~~~~~i~~~~~~-~~~~~~~~~l~~L~-~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~-~lGls~ 126 (392)
|+..+||+++++.+|..+.-= ...+.+...+..|. ..|++.++|.+|-...-.--.. + .+...+..|. ..|+++
T Consensus 418 l~~~~glt~~qvv~IAsn~GGkQALe~V~~llp~L~~~~glt~aqvVaIAsn~GGkQAL--e-aV~~llpvl~~~~gls~ 494 (1047)
T 3ugm_A 418 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQAL--E-TVQQLLPVLCQAHGLTP 494 (1047)
T ss_dssp HHTTSSCCHHHHHHHHSSTTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHH--H-HHHHHHHHHHHHSCCCS
T ss_pred hhhhcCCCHHHhhhhhccCchHHHHHHHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHH--H-HHHHHHHHHHHhcCCCH
Confidence 444566666666666543200 00011122222232 5777777776654322110000 0 1111222233 378888
Q ss_pred hhHHHhhhcCcc---ccccccccchhhHHHHHHhhccCCchHHHHHh
Q 046450 127 PDLAKILCPYPE---LLSRSLENHIIPTFDFLKGVFQANGNLVYALK 170 (392)
Q Consensus 127 ~~l~~il~~~P~---lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~ 170 (392)
+++..|...+-. +-.. ..+.|.+. +..|++.++|..|-.
T Consensus 495 ~qvvaiA~n~GGkQALeaV---~~l~p~l~--~~~gls~~qVVaIAs 536 (1047)
T 3ugm_A 495 DQVVAIASNIGGKQALATV---QRLLPVLC--QAHGLTPDQVVAIAS 536 (1047)
T ss_dssp HHHHHHHSSTTHHHHHHHH---HHHSGGGT--TTTCCCSHHHHHHHS
T ss_pred HHHHHHHhccchHHHHHHH---HHhhhhhc--cccCCCHHHhhhhhc
Confidence 888877755421 1110 01222222 356666666666553
No 27
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.00 E-value=31 Score=25.38 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhC
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIG 300 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G 300 (392)
..+|+-|..|||+++++.+.++.+- .++...++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 3567778889999998888777532 247778899988766
No 28
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.43 E-value=26 Score=24.13 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhh
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKI 299 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~ 299 (392)
..+++-|.+|||+++++.+.+..+-. ++...++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 45677888999999999888887532 3667788888754
No 29
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.36 E-value=21 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Q 046450 254 QRKKEILISFGWSEDEFRMVFKR 276 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~ 276 (392)
..+|+-|.++||+++++.+.+..
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 45688888899999988877665
No 30
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=44.96 E-value=23 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Q 046450 252 TWQRKKEILISFGWSEDEFRMVFKR 276 (392)
Q Consensus 252 ~l~~kv~fL~~lG~s~~ei~~~i~~ 276 (392)
-.+..|+-|.++||+++++.+.+..
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566788899999999998876654
No 31
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.34 E-value=22 Score=24.64 Aligned_cols=38 Identities=8% Similarity=0.269 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHh
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNK 298 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~ 298 (392)
..+|+-|..|||+++++.+.+..+=. ++...++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~-------nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGN-------NLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTS-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHHC
Confidence 35677888999999998887776421 466778888873
No 32
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=41.78 E-value=19 Score=25.83 Aligned_cols=38 Identities=5% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHH
Q 046450 253 WQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 253 l~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~ 297 (392)
.+.+|+-|.+|||+++++...+..+= .++...++||..
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 35677788889999999888877631 146666788875
No 33
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=41.06 E-value=18 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHH
Q 046450 253 WQRKKEILISFGW-SEDEFRMVFK 275 (392)
Q Consensus 253 l~~kv~fL~~lG~-s~~ei~~~i~ 275 (392)
...+++-|.+||| +++.+.+.+.
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445555555666 4444443333
No 34
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.50 E-value=25 Score=24.17 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCCCchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhh
Q 046450 41 DERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTS 85 (392)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~ 85 (392)
..+...|.-|+ .+||+++++.++.+.. ..+++..++||-+
T Consensus 7 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t----~~nve~A~e~L~~ 46 (63)
T 2dak_A 7 GPPEDCVTTIV-SMGFSRDQALKALRAT----NNSLERAVDWIFS 46 (63)
T ss_dssp CCCHHHHHHHH-HHTCCHHHHHHHHHHT----TSCSHHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHc----CCCHHHHHHHHHh
Confidence 44555677775 5788888777765542 1356667777653
No 35
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=40.17 E-value=73 Score=22.11 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=22.7
Q ss_pred HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHh
Q 046450 262 SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIA 307 (392)
Q Consensus 262 ~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~ 307 (392)
.+|++...+.++....- ..+.+.+....+.|-+.+|++++++.
T Consensus 32 ~~gis~~~i~~~e~g~~---~~~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 32 FLGLSQSDISKIESFER---RLDALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHTCCHHHHHHHHTTSS---CCBHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHccccCCCHHHHH
Confidence 34445444444443221 13445555566666666688877764
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.21 E-value=23 Score=22.71 Aligned_cols=36 Identities=8% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHH
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~ 297 (392)
..+++-|.++||+.+++.+.+..+ + ++..-++||.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHc
Confidence 346777888999999988888875 1 35566666654
No 37
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.94 E-value=31 Score=23.87 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHH
Q 046450 256 KKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 256 kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~ 297 (392)
.++-|..|||+.+++.+.+..+-. .++...++||.+
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHh
Confidence 456677788888887777766332 245666777765
No 38
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.35 E-value=47 Score=23.71 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhC
Q 046450 255 RKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIG 300 (392)
Q Consensus 255 ~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G 300 (392)
.+++-|.+|||+++.+.+.+..+-. ..+...++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 4567788899999998888776421 136778899998543
No 39
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=37.17 E-value=64 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=10.0
Q ss_pred hHHHhhhhCCC-ChHHHHHHHH
Q 046450 78 SSIQLLTSRGF-TKPQIATLIS 98 (392)
Q Consensus 78 ~~l~~L~~lGl-~~~~i~~ll~ 98 (392)
..++-|.++|| +.....+.+.
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~ 34 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALI 34 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 34555555666 4443333333
No 40
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.57 E-value=32 Score=24.49 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHH
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~ 297 (392)
..+++-|.++||+++++.+.++.+-. ++...++||.+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG-------DIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 34667788899999888877776432 46667788776
No 41
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.01 E-value=35 Score=23.53 Aligned_cols=39 Identities=15% Similarity=0.398 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhh
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKI 299 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~ 299 (392)
...|+-+..|||+.++..+.+++.. .++++..|||-..+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCC
Confidence 4458888899999999988887733 25777888887754
No 42
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.51 E-value=2.2e+02 Score=23.68 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=56.6
Q ss_pred chhhHHHHHHhhcc-CCchHHHHHhhCccee-ccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechhhHHHHHH
Q 046450 147 HIIPTFDFLKGVFQ-ANGNLVYALKQSIRVV-NSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVD 224 (392)
Q Consensus 147 ~l~p~v~fL~~lg~-~~~~i~~il~~~P~lL-~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~ 224 (392)
.+...+++|.+.|. ++...+....+.-.-. ..+. .....-|+.-||+.+.|...+...+ ..+.......
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~----~~I~~eL~~KGI~~~~I~~al~~~~-----~~de~e~a~~ 121 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP----KVIKLNLSKKGIDDNIAEDALILYT-----DKLQVEKGVT 121 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH----HHHHHHHHTTTCCHHHHHHHHTTSC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH----HHHHHHHHHcCCCHHHHHHHHHhCC-----chhHHHHHHH
Confidence 56677778888776 3445555444321111 1222 2333557788999988887765332 1111222222
Q ss_pred HHH-HhCCCCCchhHHHHHHHHHhcCHHHHHHH-HHHHHHcCCCHHHHHHHHHh
Q 046450 225 VIK-EMGFEPSSKSFILAVRSMAMSSKATWQRK-KEILISFGWSEDEFRMVFKR 276 (392)
Q Consensus 225 ~L~-~lG~~~~~~~~~~~~~~~~~~s~~~l~~k-v~fL~~lG~s~~ei~~~i~~ 276 (392)
.++ .+| .....+....+.| +.||..-||+.+.|..++..
T Consensus 122 l~~Kk~~-------------~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 122 LAEKLAN-------------RYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHH-------------HTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHh-------------hccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 221 111 1011123333434 56888999999999887765
No 43
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.43 E-value=70 Score=21.42 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHhCCCC
Q 046450 217 ELFKNVVDVIKEMGFEP 233 (392)
Q Consensus 217 ~~~~~~v~~L~~lG~~~ 233 (392)
+.....++.|.++||..
T Consensus 7 e~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCD 23 (54)
T ss_dssp TTHHHHHHHHHHHTCCC
T ss_pred HhhHHHHHHHHHcCCCc
Confidence 34555566666666643
No 44
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=31.27 E-value=1e+02 Score=20.84 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=6.3
Q ss_pred HHHHHHHHHHcCC
Q 046450 253 WQRKKEILISFGW 265 (392)
Q Consensus 253 l~~kv~fL~~lG~ 265 (392)
.+.+++-|.+|||
T Consensus 17 ~~~qi~~L~~MGF 29 (58)
T 1wr1_B 17 YEHQLRQLNDMGF 29 (58)
T ss_dssp THHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 3444444555554
No 45
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=31.05 E-value=39 Score=23.33 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=25.9
Q ss_pred HHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCc
Q 046450 192 RAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSS 235 (392)
Q Consensus 192 ~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~ 235 (392)
+.+|++...|..++...+.-...+.+..+...+.++++|+.++.
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 45778877777777655511112444455555556677777663
No 46
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.49 E-value=80 Score=22.49 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=8.7
Q ss_pred hHHHhHhhcCCCHHHHHhhc
Q 046450 46 TVSFLTHSCGLSLEKAISVS 65 (392)
Q Consensus 46 ~v~~L~~~~Gls~~~~~~i~ 65 (392)
.|.-|+ ++||+.+++..+.
T Consensus 32 ~I~~L~-eMGF~r~~a~~AL 50 (73)
T 1vg5_A 32 QIQKLV-AMGFDRTQVEVAL 50 (73)
T ss_dssp HHHHHH-TTTCCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHH
Confidence 344442 4455555554443
No 47
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=30.42 E-value=2.2e+02 Score=23.18 Aligned_cols=109 Identities=12% Similarity=0.166 Sum_probs=54.3
Q ss_pred chhhHHHHHHhhccCC-chHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechhhHHHHHHH
Q 046450 147 HIIPTFDFLKGVFQAN-GNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDV 225 (392)
Q Consensus 147 ~l~p~v~fL~~lg~~~-~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~ 225 (392)
.+...+++|.+.|.-+ ...+....+.-.-=+.+ -.....-|+.-||+.+.|...+.... .+........
T Consensus 50 ~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G----~~~I~~eL~~KGI~~~~I~~al~~~~------~de~e~a~~l 119 (162)
T 3dfg_A 50 AAQAAVERLAGEGWQDDVRFAASVVRNRASSGYG----PLHIRAELGTHGLDSDAVSAAMATFE------GDWTENALDL 119 (162)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCC----HHHHHHHHHHTTCCHHHHHHHHTTCC------SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc----HHHHHHHHHHcCCCHHHHHHHHHhCc------HhHHHHHHHH
Confidence 4555666777666533 33333332211000122 22334567778888888877765442 1112222222
Q ss_pred HH-HhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHhCC
Q 046450 226 IK-EMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQP 278 (392)
Q Consensus 226 L~-~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~~lG~s~~ei~~~i~~~P 278 (392)
+. .+|-... .....-.+.+.||..-||+.+.|..++...|
T Consensus 120 ~~Kk~~~~~~-------------~~~~~k~K~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 120 IRRRFGEDGP-------------VDLAQRRKAADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHCTTCC-------------CSHHHHHHHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHhcCCCCC-------------CCHHHHHHHHHHHHHCCCCHHHHHHHHhcCc
Confidence 22 2332110 0122334456788899999999988876544
No 48
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=30.19 E-value=76 Score=21.93 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCc
Q 046450 189 NTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSS 235 (392)
Q Consensus 189 ~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~ 235 (392)
+.-+.+|++..-|..++...|. .+.+..+...+..+++|+.++.
T Consensus 14 diA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 14 DVALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 3345689999999888876664 2455555566667788888763
No 49
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=29.18 E-value=53 Score=21.04 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHcCCC
Q 046450 251 ATWQRKKEILISFGWS 266 (392)
Q Consensus 251 ~~l~~kv~fL~~lG~s 266 (392)
+..+.+++-|.++||+
T Consensus 5 ~~~~~~i~~L~~MGF~ 20 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFF 20 (46)
T ss_dssp HHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3445566666666664
No 50
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=29.16 E-value=18 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHh
Q 046450 255 RKKEILISFGWSEDEFRMVFKR 276 (392)
Q Consensus 255 ~kv~fL~~lG~s~~ei~~~i~~ 276 (392)
.+|+-|..+||++..+.+.+..
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a 27 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFA 27 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3456667788888777666554
No 51
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.04 E-value=80 Score=21.68 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCCCchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhh
Q 046450 41 DERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTS 85 (392)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~ 85 (392)
..+...|.-|+ ++||+..++.++.+.-. ..+++..++||-+
T Consensus 7 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~---~~nve~A~ewLl~ 47 (64)
T 1whc_A 7 GAELTALESLI-EMGFPRGRAEKALALTG---NQGIEAAMDWLME 47 (64)
T ss_dssp CCCCCHHHHHH-TTTCCHHHHHHHHHHHT---SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhc---CCCHHHHHHHHHh
Confidence 45556777785 67888888887755310 1457777777764
No 52
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.48 E-value=80 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhCCCC
Q 046450 219 FKNVVDVIKEMGFEP 233 (392)
Q Consensus 219 ~~~~v~~L~~lG~~~ 233 (392)
..+.++.|.++||+.
T Consensus 9 ~~~~l~~L~~MGF~d 23 (54)
T 2dah_A 9 FQVQLEQLRSMGFLN 23 (54)
T ss_dssp SHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCc
Confidence 344455555555543
No 53
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.51 E-value=91 Score=23.88 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=30.8
Q ss_pred cCHHHHHHHHHHHHHc-CCCHHHHHHHHHhCCccccccHHHHHHHHHHHHH
Q 046450 248 SSKATWQRKKEILISF-GWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVN 297 (392)
Q Consensus 248 ~s~~~l~~kv~fL~~l-G~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~ 297 (392)
.+...++++|+.|.++ ||+++++...+..+=. .+...+.+|.+
T Consensus 34 ~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lle 77 (104)
T 1wj7_A 34 HNDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLE 77 (104)
T ss_dssp SCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 3445678899999977 9999999877765211 35566777775
No 54
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.98 E-value=81 Score=21.71 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.0
Q ss_pred CCCCCchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhhC
Q 046450 40 SDERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSR 86 (392)
Q Consensus 40 ~~~~~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~l 86 (392)
.+++..+|.-|+ ++||+.+.+.++...-. ..+++..++||-+.
T Consensus 6 ~~~~e~~v~~L~-~MGF~~~~a~~AL~~t~---n~~~e~A~~wL~~h 48 (64)
T 2crn_A 6 SGSSPSLLEPLL-AMGFPVHTALKALAATG---RKTAEEALAWLHDH 48 (64)
T ss_dssp CCCSCSSHHHHH-HTSCCHHHHHHHHHHHT---SCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HcCCCHHHHHHHHHHhC---CCCHHHHHHHHHhC
Confidence 355666788886 57888888887754311 13567777777653
No 55
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.77 E-value=55 Score=24.16 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHh
Q 046450 255 RKKEILISFGWSEDEFRMVFKR 276 (392)
Q Consensus 255 ~kv~fL~~lG~s~~ei~~~i~~ 276 (392)
..|.+++.+|||-++|..++..
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 4577888999999999999864
No 56
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.59 E-value=1.6e+02 Score=20.04 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhH
Q 046450 261 ISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDI 306 (392)
Q Consensus 261 ~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i 306 (392)
+.+|+|...|.+++...|.-...+.+..+...+... ++|+.++..
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~-~lgY~pn~~ 52 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVR-EHNYHPNAV 52 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHH-HHTCCCC--
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HhCCCccHH
Confidence 368999999999998877333456555555555554 489876544
No 57
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=22.45 E-value=52 Score=28.40 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=55.1
Q ss_pred chhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechh
Q 046450 147 HIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAE 217 (392)
Q Consensus 147 ~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~ 217 (392)
.|-.+++.|.++.-.-+.+..++...-...+++ +|++.|+-+....+..+++++|..-+|.....+.+
T Consensus 31 ~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~---~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l~~~ 98 (201)
T 1wlq_C 31 VLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFA---KVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQE 98 (201)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHH---HHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCccccHH---HHHHHHHHHhcCCcCHHHHHHHHHhccCceEEEee
Confidence 466778888887777788888888777777776 58999999988889999999999888888766543
No 58
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.99 E-value=81 Score=23.02 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhh
Q 046450 255 RKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKI 299 (392)
Q Consensus 255 ~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~ 299 (392)
..++-|.+|||+.+.+.+.+..+- .++...++||.+.+
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t~-------~nve~A~ewL~~~~ 68 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLNH-------MSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 356677789999999888887641 24677789998854
No 59
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.54 E-value=1.8e+02 Score=25.79 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHH-hhCCChhhHhc--------CCcccccCCCCccchhHHHHHHHHHcCCCCCCcccccccccChHHHH
Q 046450 285 AKKIRKLMDFFVN-KIGLEPSDIAR--------YPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFE 355 (392)
Q Consensus 285 ~e~L~~~~~fL~~-~~G~~~~~i~~--------~P~lL~~sle~~l~pR~~~l~~L~~~G~~~~~~~l~~~l~~s~~~F~ 355 (392)
.+.++..+..+.+ -||.+.+++.. +|.+..-++....--|+ .-+++...|+ .+.++.+++..+.+++.
T Consensus 47 p~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~~l~~~r~-l~~~l~~~gv--~DFtl~DL~kP~~~Rt~ 123 (250)
T 2ve7_C 47 PEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSNLVTH-LDSFLPICRV--NDFETADILCPKAKRTS 123 (250)
T ss_dssp HHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHHHHHHHHH-HHHHHHHTTC--CCCCHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHHHHHHHHH-HHHHHHHcCC--CCCcHhHhcCCchHHHH
Confidence 4566666655555 67888777632 33333333321111121 1245566787 37888999998888875
No 60
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.06 E-value=87 Score=22.99 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHh
Q 046450 254 QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNK 298 (392)
Q Consensus 254 ~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~ 298 (392)
.++++-|..+||+++.+.+.+..+= ..+...++||.+.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n-------~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNN-------MNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHC
Confidence 5678888899999999887774321 2477889999874
No 61
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.75 E-value=1.5e+02 Score=18.23 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHH
Q 046450 252 TWQRKKEILISFGWSEDEFRMV 273 (392)
Q Consensus 252 ~l~~kv~fL~~lG~s~~ei~~~ 273 (392)
.++.-+.-+++-|||.+++..+
T Consensus 4 alkselqalkkegfspeelaal 25 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3455566777889998887643
No 62
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.63 E-value=1.9e+02 Score=20.49 Aligned_cols=14 Identities=21% Similarity=0.672 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHhCC
Q 046450 218 LFKNVVDVIKEMGF 231 (392)
Q Consensus 218 ~~~~~v~~L~~lG~ 231 (392)
..++.++.|.++||
T Consensus 28 ~ye~qi~qL~eMGF 41 (74)
T 1vej_A 28 RYQQELEELKALGF 41 (74)
T ss_dssp TSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 34455555555555
No 63
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=20.42 E-value=1.1e+02 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhC
Q 046450 252 TWQRKKEILISFGWSEDEFRMVFKRQ 277 (392)
Q Consensus 252 ~l~~kv~fL~~lG~s~~ei~~~i~~~ 277 (392)
...+-++-|..+||+..|+.+++.+.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34566778889999999999888773
Done!