BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046451
(719 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 217/415 (52%), Gaps = 53/415 (12%)
Query: 1 MACIKGINRSASVAFAPDA-PYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDRDLLLVG 59
M + +R+A+ A++ D P + +GT++G VD +FS+ ++LE++ L ++ +
Sbjct: 6 MVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---IA 62
Query: 60 ESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPL--IA 117
+FN L W N ++AG L +GS++++ S N + +A
Sbjct: 63 SLQVDSKFNDLDWSHNNK--------IIAGALDNGSLELY-------STNEANNAINSMA 107
Query: 118 HLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAE-PSHFPPLR-GNGSAAQGE 175
S H V+ ++FN+ N+LASG ++GEI IWD++ E PS++ PL G ++ E
Sbjct: 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Query: 176 ISFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSES-----IKRRCSVLQWNPDVA 230
+ ++WN + H+ AS + +WDLK +K VI S + IK++ SV++W+P +
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227
Query: 231 TQLVVASDEDSSPALRLWDMRNTMSPVKEF-VGHTKGVIAMSWCPNDSSYLLTCAKDNRT 289
T++ A+ D+ P++ +WD+RN +P++ GH KG++++ WC D LL+ +DN
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287
Query: 290 ICWDTVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNIEGC--------- 340
+ W+ S E +S+ PA NW F + P+ P + + +SFD KI + ++
Sbjct: 288 LLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET 347
Query: 341 -SRYGVGDSNF-------------SAAPLRAPKWYKRPA-GASFGFGGKLVSFHP 380
++ +++F S L+AP WY P+ A + FGGKLV P
Sbjct: 348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITP 402
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 33/253 (13%)
Query: 70 LAWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGL 129
L+W N SG + D +I +W+ ++ G+ I + H V +
Sbjct: 183 LSWNPNLSGH-------LLSASDDHTICLWDISAVPKEGKVVDAKTI--FTGHTAVVEDV 233
Query: 130 EFNSFTPNLLASGADDGEICIWDLSA--PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQH 187
++ +L S ADD ++ IWD + ++PSH + A E++ +S+N +
Sbjct: 234 SWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSH------SVDAHTAEVNCLSFNPYSEF 287
Query: 188 ILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRL 247
ILA+ S + T +WDL+ K + ES K +QW+P T L + + L +
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---TDRRLNV 344
Query: 248 WDMRNTMS-----------PVKEFV--GHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDT 294
WD+ P F+ GHT + SW PN+ + + ++DN W
Sbjct: 345 WDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Query: 295 VSGEIVSELPAGT 307
E P G+
Sbjct: 405 AENIYNDEDPEGS 417
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H+ GL +N L S +DD IC+WD+SA + + + +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQ---KPVISFSESIKRRCSVLQWNPDVATQLVV 235
VSW+ + + S + + ++WD + KP S ++ + L +NP ++ ++
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV-DAHTAEVNCLSFNP--YSEFIL 289
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD 293
A+ + + LWD+RN + F H + + W P++ + L + D R WD
Sbjct: 290 ATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 255 SPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTIC-WD 293
+P GH K +SW PN S +LL+ A D+ TIC WD
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLS-ASDDHTICLWD 206
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 21/236 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H+ GL +NS L S +DD +C+WD++A + + + +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQ---KPVISFSESIKRRCSVLQWNPDVATQLVV 235
V+W+ + + S + + ++WD + KP ++ + L +NP ++ ++
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNP--YSEFIL 291
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD-- 293
A+ + + LWD+RN + F H + + W P++ + L + D R WD
Sbjct: 292 ATGS-ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 294 ----TVSGEIVSELP--------AGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
S E + P T D W P P VI + S D + I+ +
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 255 SPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTIC-WDTVSG 297
+P GH K +SW N S +LL+ A D+ T+C WD +G
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLS-ASDDHTVCLWDINAG 212
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H+ GL +N L S +DD IC+WD++A + + + +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQ---KPVISFSESIKRRCSVLQWNPDVATQLVV 235
V+W+ + + S + + ++WD + KP + ++ + L +NP ++ ++
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNP--YSEFIL 297
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD 293
A+ + + LWD+RN + F H + + W P++ + L + D R WD
Sbjct: 298 ATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 122 HKGPVRGLEFNSFTPNLLASGADDGEICIWDL--SAPAEPSHFPPLRGNGSAAQGEISFV 179
H V + ++ +L S ADD ++ IWD + ++PSH A E++ +
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH------TVDAHTAEVNCL 287
Query: 180 SWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDE 239
S+N + ILA+ S + T +WDL+ K + ES K +QW+P T L +
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-- 345
Query: 240 DSSPALRLWDMRNTMS-----------PVKEFV--GHTKGVIAMSWCPNDSSYLLTCAKD 286
+ L +WD+ P F+ GHT + SW PN+ + + ++D
Sbjct: 346 -TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 404
Query: 287 NRTICWDTVSGEIVSELP 304
N W E P
Sbjct: 405 NIMQVWQMAENVYNDEEP 422
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 223 LQWNPDVATQLVVASDEDSSPALRLWDMRNT------MSPVKEFVGHTKGVIAMSWCPND 276
L WNP++ L+ ASD+ + + LWD+ T + F GHT V ++W
Sbjct: 191 LSWNPNLNGYLLSASDDHT---ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 247
Query: 277 SSYLLTCAKDNRTICWDT 294
S + A D + + WDT
Sbjct: 248 ESLFGSVADDQKLMIWDT 265
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H+ GL +N L S +DD IC+WD++A + + + +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQ---KPVISFSESIKRRCSVLQWNPDVATQLVV 235
V+W+ + + S + + ++WD + KP + ++ + L +NP ++ ++
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNP--YSEFIL 295
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD 293
A+ + + LWD+RN + F H + + W P++ + L + D R WD
Sbjct: 296 ATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 27/202 (13%)
Query: 122 HKGPVRGLEFNSFTPNLLASGADDGEICIWDL--SAPAEPSHFPPLRGNGSAAQGEISFV 179
H V + ++ +L S ADD ++ IWD + ++PSH A E++ +
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH------TVDAHTAEVNCL 285
Query: 180 SWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDE 239
S+N + ILA+ S + T +WDL+ K + ES K +QW+P T L +
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-- 343
Query: 240 DSSPALRLWDMRNTMS-----------PVKEFV--GHTKGVIAMSWCPNDSSYLLTCAKD 286
+ L +WD+ P F+ GHT + SW PN+ + + ++D
Sbjct: 344 -TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 402
Query: 287 NRTICW---DTVSGEIVSELPA 305
N W + V + E+PA
Sbjct: 403 NIMQVWQMAENVYNDEEPEIPA 424
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 223 LQWNPDVATQLVVASDEDSSPALRLWDMRNT------MSPVKEFVGHTKGVIAMSWCPND 276
L WNP++ L+ ASD+ + + LWD+ T + F GHT V ++W
Sbjct: 189 LSWNPNLNGYLLSASDDHT---ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 245
Query: 277 SSYLLTCAKDNRTICWDT 294
S + A D + + WDT
Sbjct: 246 ESLFGSVADDQKLMIWDT 263
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H+ GL +N L S +DD IC+WD++A + + + +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQ---KPVISFSESIKRRCSVLQWNPDVATQLVV 235
V+W+ + + S + + ++WD + KP + ++ + L +NP ++ ++
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNP--YSEFIL 293
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD 293
A+ + + LWD+RN + F H + + W P++ + L + D R WD
Sbjct: 294 ATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 27/202 (13%)
Query: 122 HKGPVRGLEFNSFTPNLLASGADDGEICIWDL--SAPAEPSHFPPLRGNGSAAQGEISFV 179
H V + ++ +L S ADD ++ IWD + ++PSH A E++ +
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH------TVDAHTAEVNCL 283
Query: 180 SWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDE 239
S+N + ILA+ S + T +WDL+ K + ES K +QW+P T L +
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-- 341
Query: 240 DSSPALRLWDMRNTMS-----------PVKEFV--GHTKGVIAMSWCPNDSSYLLTCAKD 286
+ L +WD+ P F+ GHT + SW PN+ + + ++D
Sbjct: 342 -TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400
Query: 287 NRTICW---DTVSGEIVSELPA 305
N W + V + E+PA
Sbjct: 401 NIMQVWQMAENVYNDEEPEIPA 422
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 223 LQWNPDVATQLVVASDEDSSPALRLWDMRNT------MSPVKEFVGHTKGVIAMSWCPND 276
L WNP++ L+ ASD+ + + LWD+ T + F GHT V ++W
Sbjct: 187 LSWNPNLNGYLLSASDDHT---ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 277 SSYLLTCAKDNRTICWDT 294
S + A D + + WDT
Sbjct: 244 ESLFGSVADDQKLMIWDT 261
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H+ GL +NS L S +DD +C+WD++A + + + +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQ---KPVISFSESIKRRCSVLQWNPDVATQLVV 235
V+W+ + + S + + +WD + KP ++ + L +NP ++ ++
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNP--YSEFIL 291
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD 293
A+ + + LWD+RN + F H + + W P++ + L + D R WD
Sbjct: 292 ATGS-ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 70 LAWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAH--LSRHKGPVR 127
L+W N SG + D ++ +W+ I++G G + A + H V
Sbjct: 185 LSWNSNLSGH-------LLSASDDHTVCLWD----INAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 128 GLEFNSFTPNLLASGADDGEICIWDL--SAPAEPSHFPPLRGNGSAAQGEISFVSWNSKV 185
+ ++ +L S ADD ++ IWD + ++PSH A E++ +S+N
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLV------DAHTAEVNCLSFNPYS 287
Query: 186 QHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPAL 245
+ ILA+ S + T +WDL+ K + ES K + W+P T L + + L
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG---TDRRL 344
Query: 246 RLWDMRNTMS-----------PVKEFV--GHTKGVIAMSWCPNDSSYLLTCAKDNRTICW 292
+WD+ P F+ GHT + SW PN+ + + ++DN W
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 122 HKGPVRGLEFNSFTPNLLASGADDGEICIWDLSA-PAEP----SHFPPLRGNGSAAQGEI 176
H+G V + P+++A+ ++ ++D + PA+P P LR G +G
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG-- 182
Query: 177 SFVSWNSKVQHILASTSYNGTTVVWDLK---KQKPVISFSESIKRRCSVLQWNPDVATQL 233
+SWNS + L S S + T +WD+ K+ ++ +V++ DVA L
Sbjct: 183 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE---DVAWHL 239
Query: 234 V-------VASDEDSSPALRLWDMR-NTMSPVKEFV-GHTKGVIAMSWCPNDSSYLLTCA 284
+ VA D+ L +WD R NT S V HT V +S+ P L T +
Sbjct: 240 LHESLFGSVADDQ----KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 285 KDNRTICWDTVSGEI-VSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
D WD + ++ + + + F +HW P ++++S D ++ ++++
Sbjct: 296 ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 122 HKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPL------RGNGSAAQGE 175
H G + L+ + SG DG I ++DL + S++ R + +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 176 ISFVSWNSKVQHILASTSYNGTTVVWDLK--KQKPVISFSESIKRRCSVLQWNPDVATQL 233
+ V W + S+S++ T VWD + V +F E++ +P V+T+
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH----HMSP-VSTKH 156
Query: 234 VVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD 293
+ + P ++L D++ + S GH + ++A+SW P L T + D+R WD
Sbjct: 157 CLVAVGTRGPKVQLCDLK-SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 48/214 (22%)
Query: 85 GLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGAD 144
G+ D ++ +W+ +L ++ + S H PV S L+A G
Sbjct: 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETV--YSHHMSPV------STKHCLVAVGTR 164
Query: 145 DGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLK 204
++ + DL + SH L+G+ + EI VSW+ + +ILA+ S + +WD++
Sbjct: 165 GPKVQLCDLKS-GSCSHI--LQGH----RQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 205 KQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT 264
+ A+ ++ D+ + + + NT G
Sbjct: 218 R------------------------ASGCLITLDQHNGKKSQAVESANTAHN-----GKV 248
Query: 265 KGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGE 298
G+ S D +LLT DNR W++ +GE
Sbjct: 249 NGLCFTS----DGLHLLTVGTDNRMRLWNSSNGE 278
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 40/259 (15%)
Query: 81 DFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTP--NL 138
D+S G V +D S+ +W+ SSG+ I L + + P + ++ N
Sbjct: 123 DWSSGNVLAVALDNSVYLWSA----SSGD------ILQLLQMEQPGEYISSVAWIKEGNY 172
Query: 139 LASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTT 198
LA G E+ +WD+ LR N ++ + +SWNS +IL+S S +G
Sbjct: 173 LAVGTSSAEVQLWDVQQQKR------LR-NMTSHSARVGSLSWNS---YILSSGSRSGHI 222
Query: 199 VVWDLK-KQKPVISFSESIKRRCSVLQWNPDVATQLVVASDED------SSPALRLWDMR 251
D++ + V + S + C L+W PD L +++ S+P W
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCG-LRWAPD-GRHLASGGNDNLVNVWPSAPGEGGW--- 277
Query: 252 NTMSPVKEFVGHTKGVIAMSWCPNDSSYLLT--CAKDNRTICWDTVSGEIVSELPAGTNW 309
P++ F H V A++WCP S+ L T D W+ SG +S + A +
Sbjct: 278 ---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ- 333
Query: 310 NFDIHWYPKIPGVISASSF 328
I W P +IS F
Sbjct: 334 VCSILWSPHYKELISGHGF 352
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 49/286 (17%)
Query: 11 ASVAFAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDRDLLLVGESPSSERFNRL 70
+SVA+ + Y+A GT SSA ++++ + Q R++ + S R L
Sbjct: 162 SSVAWIKEGNYLAVGT----------SSAEVQLWDVQQQKRLRNM-----TSHSARVGSL 206
Query: 71 AWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLE 130
+W S S G +G + + + +A LS H V GL
Sbjct: 207 SW-----NSYILSSGSRSGHIHHHDVRV-------------AEHHVATLSGHSQEVCGLR 248
Query: 131 FNSFTPN--LLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHI 188
+ P+ LASG +D + +W SAP E + PL+ + QG + V+W ++
Sbjct: 249 ---WAPDGRHLASGGNDNLVNVWP-SAPGEGG-WVPLQ-TFTQHQGAVKAVAWCPWQSNV 302
Query: 189 LAS--TSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALR 246
LA+ + + +W++ +S ++ + CS+L W+P +++ + L
Sbjct: 303 LATGGGTSDRHIRIWNVCS-GACLSAVDAHSQVCSIL-WSPHYKE--LISGHGFAQNQLV 358
Query: 247 LWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICW 292
+W TM+ V E GHT V++++ P D + + + A D W
Sbjct: 359 IWKY-PTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 40/259 (15%)
Query: 81 DFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTP--NL 138
D+S G V +D S+ +W+ SSG+ I L + + P + ++ N
Sbjct: 112 DWSSGNVLAVALDNSVYLWSA----SSGD------ILQLLQMEQPGEYISSVAWIKEGNY 161
Query: 139 LASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTT 198
LA G E+ +WD+ LR N ++ + +SWNS +IL+S S +G
Sbjct: 162 LAVGTSSAEVQLWDVQQQKR------LR-NMTSHSARVGSLSWNS---YILSSGSRSGHI 211
Query: 199 VVWDLK-KQKPVISFSESIKRRCSVLQWNPDVATQLVVASDED------SSPALRLWDMR 251
D++ + V + S + C L+W PD L +++ S+P W
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCG-LRWAPD-GRHLASGGNDNLVNVWPSAPGEGGW--- 266
Query: 252 NTMSPVKEFVGHTKGVIAMSWCPNDSSYLLT--CAKDNRTICWDTVSGEIVSELPAGTNW 309
P++ F H V A++WCP S+ L T D W+ SG +S + A +
Sbjct: 267 ---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ- 322
Query: 310 NFDIHWYPKIPGVISASSF 328
I W P +IS F
Sbjct: 323 VCSILWSPHYKELISGHGF 341
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 49/286 (17%)
Query: 11 ASVAFAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDRDLLLVGESPSSERFNRL 70
+SVA+ + Y+A GT SSA ++++ + Q R++ + S R L
Sbjct: 151 SSVAWIKEGNYLAVGT----------SSAEVQLWDVQQQKRLRNM-----TSHSARVGSL 195
Query: 71 AWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLE 130
+W S S G +G + + + +A LS H V GL
Sbjct: 196 SW-----NSYILSSGSRSGHIHHHDVRV-------------AEHHVATLSGHSQEVCGLR 237
Query: 131 FNSFTPN--LLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHI 188
+ P+ LASG +D + +W SAP E + PL+ + QG + V+W ++
Sbjct: 238 ---WAPDGRHLASGGNDNLVNVWP-SAPGEGG-WVPLQ-TFTQHQGAVKAVAWCPWQSNV 291
Query: 189 LAS--TSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALR 246
LA+ + + +W++ +S ++ + CS+L W+P +++ + L
Sbjct: 292 LATGGGTSDRHIRIWNVCS-GACLSAVDAHSQVCSIL-WSPHYKE--LISGHGFAQNQLV 347
Query: 247 LWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICW 292
+W TM+ V E GHT V++++ P D + + + A D W
Sbjct: 348 IWKY-PTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 40/259 (15%)
Query: 81 DFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTP--NL 138
D+S G V +D S+ +W+ SSG+ I L + + P + ++ N
Sbjct: 32 DWSSGNVLAVALDNSVYLWSA----SSGD------ILQLLQMEQPGEYISSVAWIKEGNY 81
Query: 139 LASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTT 198
LA G E+ +WD+ LR N ++ + +SWNS +IL+S S +G
Sbjct: 82 LAVGTSSAEVQLWDVQQQKR------LR-NMTSHSARVGSLSWNS---YILSSGSRSGHI 131
Query: 199 VVWDLK-KQKPVISFSESIKRRCSVLQWNPDVATQLVVASDED------SSPALRLWDMR 251
D++ + V + S + C L+W PD L +++ S+P W
Sbjct: 132 HHHDVRVAEHHVATLSGHSQEVCG-LRWAPD-GRHLASGGNDNLVNVWPSAPGEGGW--- 186
Query: 252 NTMSPVKEFVGHTKGVIAMSWCPNDSSYLLT--CAKDNRTICWDTVSGEIVSELPAGTNW 309
P++ F H V A++WCP S+ L T D W+ SG +S + A +
Sbjct: 187 ---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ- 242
Query: 310 NFDIHWYPKIPGVISASSF 328
I W P +IS F
Sbjct: 243 VCSILWSPHYKELISGHGF 261
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 124/286 (43%), Gaps = 49/286 (17%)
Query: 11 ASVAFAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDRDLLLVGESPSSERFNRL 70
+SVA+ + Y+A GT SSA ++++ + Q R++ + S R L
Sbjct: 71 SSVAWIKEGNYLAVGT----------SSAEVQLWDVQQQKRLRNM-----TSHSARVGSL 115
Query: 71 AWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLE 130
+W S S G +G + + + +A LS H V GL
Sbjct: 116 SW-----NSYILSSGSRSGHIHHHDVRV-------------AEHHVATLSGHSQEVCGLR 157
Query: 131 FNSFTPN--LLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHI 188
+ P+ LASG +D + +W SAP E + PL+ + QG + V+W ++
Sbjct: 158 ---WAPDGRHLASGGNDNLVNVWP-SAPGEGG-WVPLQ-TFTQHQGAVKAVAWCPWQSNV 211
Query: 189 LAS--TSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALR 246
LA+ + + +W++ +S ++ + CS+L W+P + +++ + L
Sbjct: 212 LATGGGTSDRHIRIWNVCS-GACLSAVDAHSQVCSIL-WSPHY--KELISGHGFAQNQLV 267
Query: 247 LWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICW 292
+W TM+ V E GHT V++++ P D + + + A D W
Sbjct: 268 IWKY-PTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 89 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 153 ----LSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 139 VKTGMCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ L D D L+LWD +K + GH K
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDND----LKLWDYSKGKC-LKTYTGHKNEKY 241
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 62 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 121 Q-SNLIVSGSFDESVRIWDVK 140
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 33/229 (14%)
Query: 86 LVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADD 145
L+ D ++ IW+ +SSG+ + L H V FN NL+ SG+ D
Sbjct: 103 LLVSASDDKTLKIWD----VSSGK-----CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 152
Query: 146 GEICIWDLSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVW 201
+ IWD+ P+H P +S V +N + ++ S+SY+G +W
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIW 200
Query: 202 DLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFV 261
D + + + + S ++++P+ + ++A+ D++ L+LWD +K +
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYT 255
Query: 262 GHT--KGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
GH K I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 304
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 83 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 142 Q-SNLIVSGSFDESVRIWDVK 161
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 23/225 (10%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
+S HK + + ++S NLL S +DD + IWD+S+ L+G+ + F
Sbjct: 85 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYV-----F 135
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQKPVISF---SESIKRRCSVLQWNPDVATQLVV 235
+ +++ S S++ + +WD+K K + + S+ + S + +N D L+V
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV----SAVHFNRD--GSLIV 189
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTV 295
+S D R+WD + V + + PN Y+L DN WD
Sbjct: 190 SSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 246
Query: 296 SGEIVSELPAGTNWNFDIHWYPKIPG--VISASSFDGKIGIYNIE 338
G+ + N + I + G I + S D + I+N++
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 89 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 139 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 241
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 62 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 121 Q-SNLIVSGSFDESVRIWDVK 140
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 92 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 141
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 142 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 190 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 244
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 65 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 124 Q-SNLIVSGSFDESVRIWDVK 143
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 89 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 139 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 241
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 62 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 121 Q-SNLIVSGSFDESVRIWDVK 140
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 33/229 (14%)
Query: 86 LVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADD 145
L+ D ++ IW+ +SSG+ + L H V FN NL+ SG+ D
Sbjct: 101 LLVSASDDKTLKIWD----VSSGK-----CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 150
Query: 146 GEICIWDLSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVW 201
+ IWD+ P+H P +S V +N + ++ S+SY+G +W
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIW 198
Query: 202 DLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFV 261
D + + + + S ++++P+ + ++A+ D++ L+LWD +K +
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYT 253
Query: 262 GHT--KGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
GH K I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 81 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 140 Q-SNLIVSGSFDESVRIWDVK 159
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 23/225 (10%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
+S HK + + ++S NLL S +DD + IWD+S+ L+G+ + F
Sbjct: 83 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYV-----F 133
Query: 179 VSWNSKVQHILASTSYNGTTVVWDLKKQKPVISF---SESIKRRCSVLQWNPDVATQLVV 235
+ +++ S S++ + +WD+K K + + S+ + S + +N D L+V
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV----SAVHFNRD--GSLIV 187
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTV 295
+S D R+WD + V + + PN Y+L DN WD
Sbjct: 188 SSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 244
Query: 296 SGEIVSELPAGTNWNFDIHWYPKIPG--VISASSFDGKIGIYNIE 338
G+ + N + I + G I + S D + I+N++
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 103 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 152
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 153 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 201 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 255
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 297
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 76 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 135 Q-SNLIVSGSFDESVRIWDVK 154
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 138 LLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGT 197
L+ G +G + I+D+ + + LR + Q + +SWN +H+L+S S +G
Sbjct: 148 FLSVGLGNGLVDIYDVESQTK------LR-TMAGHQARVGCLSWN---RHVLSSGSRSGA 197
Query: 198 TVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPV 257
D++ I + L W D QL +++ +++WD R+++ P
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSD-GLQLASGGNDN---VVQIWDARSSI-PK 252
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLT--CAKDNRTICWDTVSGEIVSELPAGTNWNFDIHW 315
H V A++WCP S+ L T D + W+ +G V+ + AG+ I W
Sbjct: 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLI-W 311
Query: 316 YPKIPGVISASSF-DGKIGIY 335
P ++S F D + I+
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIW 332
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 92 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 141
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 142 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 190 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 244
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 65 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 124 Q-SNLIVSGSFDESVRIWDVK 143
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 89 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 139 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 241
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 62 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 121 Q-SNLIVSGSFDESVRIWDVK 140
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 89 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 138
Query: 153 ----LSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 139 VKTGMCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 241
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 62 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 121 Q-SNLIVSGSFDESVRIWDVK 140
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 92 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 141
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 142 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 190 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 244
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 65 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 124 Q-SNLIVSGSFDESVRIWDVK 143
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 91 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 140
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 141 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 189 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 243
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 285
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 64 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 122
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 123 Q-SNLIVSGSFDESVRIWDVK 142
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 86 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 135
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 136 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 184 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 238
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 59 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 118 Q-SNLIVSGSFDESVRIWDVK 137
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 85 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 134
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 135 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 183 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 237
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 279
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 58 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 116
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 117 Q-SNLIVSGSFDESVRIWDVK 136
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 87 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 136
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 137 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 185 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 239
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 281
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 60 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 118
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 119 Q-SNLIVSGSFDESVRIWDVK 138
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 86 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 135
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 136 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 184 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 238
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 59 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 118 Q-SNLIVSGSFDESVRIWDVK 137
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D ++ IW+ +SSG+ + L H V FN NL+ SG+ D + IWD
Sbjct: 82 DKTLKIWD----VSSGKC-----LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD 131
Query: 153 LSA----PAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKP 208
+ P+H P +S V +N + ++ S+SY+G +WD +
Sbjct: 132 VKTGKCLKTLPAHSDP-----------VSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 209 VISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHT--KG 266
+ + + S ++++P+ + ++A+ D++ L+LWD +K + GH K
Sbjct: 180 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNT--LKLWDYSKGKC-LKTYTGHKNEKY 234
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTN 308
I ++ ++++ ++DN W+ + EIV +L T+
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 276
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 258 KEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDIHWYP 317
K GH G+ ++W +DS+ L++ + D WD SG+ + L +N+ F ++ P
Sbjct: 55 KTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 113
Query: 318 KIPGVISASSFDGKIGIYNIE 338
+ +I + SFD + I++++
Sbjct: 114 Q-SNLIVSGSFDESVRIWDVK 133
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 37/144 (25%)
Query: 12 SVAFAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDRDLLLVGESPSSERFNRLA 71
++AF+PD+ Y+A GT G V++ F + + + LD + + +L + SP +
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNI-FGVESGKKEYSLD--TRGKFILSIAYSPDGK------ 177
Query: 72 WGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEF 131
+A G +DG I+I++ I++G+ L+ L H P+R L
Sbjct: 178 --------------YLASGAIDGIINIFD----IATGK-----LLHTLEGHAMPIRSL-- 212
Query: 132 NSFTPN--LLASGADDGEICIWDL 153
+F+P+ LL + +DDG I I+D+
Sbjct: 213 -TFSPDSQLLVTASDDGYIKIYDV 235
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 244 ALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSEL 303
+LRLW+++N K F+GHTK V+++++ P D+ +++ +DN W+ V GE + L
Sbjct: 90 SLRLWNLQNGQCQYK-FLGHTKDVLSVAFSP-DNRQIVSGGRDNALRVWN-VKGECMHTL 146
Query: 304 PAG--TNWNFDIHWYPKIPG-VISASSFDGKIGIYNI 337
G T+W + + P + VI + +D + ++++
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL 183
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 221 SVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYL 280
S ++++P + ++V+ D+ +++WD+ T V + GHT V +++ P D S
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDN--LVKVWDLA-TGRLVTDLKGHTNYVTSVTVSP-DGSLC 211
Query: 281 LTCAKDNRTICWDTVSGEIVSELPAG 306
+ KD WD GE +SE+ AG
Sbjct: 212 ASSDKDGVARLWDLTKGEALSEMAAG 237
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 165 LRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQ 224
LRG G ++ ++ + ++ S S + T ++W L + + + I +R L+
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET----NYGIPQR--ALR 83
Query: 225 WNPDVATQLVVASDEDSSPA------LRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSS 278
+ + +V++SD + + LRLWD+ T + + FVGHTK V+++++ +D+
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAF-SSDNR 141
Query: 279 YLLTCAKDNRTICWDTVS-GEIVSELPAGTNWNFDIHWYPKIPG-VISASSFDGKIGIYN 336
+++ ++D W+T+ + + + + W + + P +I + +D + ++N
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 337 IEGC 340
+ C
Sbjct: 202 LANC 205
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H G V + P+++ S + D I +W L+ E ++ P R A +G F
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD-ETNYGIPQR----ALRGHSHF 88
Query: 179 VS---WNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVV 235
VS +S Q L S S++GT +WDL F K SV ++ D + +V
Sbjct: 89 VSDVVISSDGQFAL-SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSD--NRQIV 144
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSS-YLLTCAKDNRTICWD 293
+ D + ++LW+ + H++ V + + PN S+ +++C D W+
Sbjct: 145 SGSRDKT--IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 41/233 (17%)
Query: 70 LAWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGL 129
LAW +G+ + G+ +G + +WN +TG L+ L+ H+ P+ +
Sbjct: 114 LAWSHDGNS--------IVTGVENGELRLWN--------KTG--ALLNVLNFHRAPIVSV 155
Query: 130 EFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF--------VSW 181
++N ++++ ++ I +W++ + HF GS+ E V W
Sbjct: 156 KWNKDGTHIISMDVENVTI-LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214
Query: 182 NSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRR--CSVLQWNPDVATQLVVASDE 239
+ ++ G V+ + ++ P + I SVL++N D L+ ASD+
Sbjct: 215 VDDDKFVIPGPK--GAIFVYQITEKTPT---GKLIGHHGPISVLEFN-DTNKLLLSASDD 268
Query: 240 DSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICW 292
+ LR+W N S F GH++ +++ SW +D +++C+ D W
Sbjct: 269 GT---LRIWHGGNGNSQ-NCFYGHSQSIVSASWVGDDK--VISCSMDGSVRLW 315
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 194 YNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNT 253
Y T++ +L+ + + S + + L W+ D + +V E+ LRLW+
Sbjct: 85 YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS--IVTGVENGE--LRLWNKTGA 140
Query: 254 MSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELP 304
+ V F H ++++ W D +++++ +N TI W+ +SG ++
Sbjct: 141 LLNVLNF--HRAPIVSVKW-NKDGTHIISMDVENVTILWNVISGTVMQHFE 188
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 165 LRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQ 224
LRG G ++ ++ + ++ S S + T ++W L + + + I +R L+
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET----NYGIPQR--ALR 60
Query: 225 WNPDVATQLVVASDEDSSPA------LRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSS 278
+ + +V++SD + + LRLWD+ T + + FVGHTK V+++++ +D+
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAF-SSDNR 118
Query: 279 YLLTCAKDNRTICWDTVS-GEIVSELPAGTNWNFDIHWYPKIPG-VISASSFDGKIGIYN 336
+++ ++D W+T+ + + + + W + + P +I + +D + ++N
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 337 IEGC 340
+ C
Sbjct: 179 LANC 182
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISF 178
L H G V + P+++ S + D I +W L+ E ++ P R A +G F
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD-ETNYGIPQR----ALRGHSHF 65
Query: 179 VS---WNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVV 235
VS +S Q L S S++GT +WDL F K SV ++ D + +V
Sbjct: 66 VSDVVISSDGQFAL-SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSD--NRQIV 121
Query: 236 ASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSS-YLLTCAKDNRTICWD 293
+ D + ++LW+ + H++ V + + PN S+ +++C D W+
Sbjct: 122 SGSRDKT--IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 251 RNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWN 310
R M + GH + AM W DS LL+ ++D + I WD+ + V +P ++W
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 311 FDIHWYPKIPGVISASSFDGKIGIYNIE 338
+ P ++ D IYN++
Sbjct: 101 MTCAYAPS-GNYVACGGLDNICSIYNLK 127
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 138 LLASGADDGEICIWDLSAPAEPSHFPPLR------------GNGSAAQGEISFVSW---- 181
LL S + DG++ IWD S H PLR GN A G + S
Sbjct: 69 LLLSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
Query: 182 ----NSKVQHILA------------------STSYNGTTVVWDLKKQKPVISFSESIKRR 219
N +V LA ++S + T +WD++ + +F+
Sbjct: 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 220 CSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSY 279
S L PD T+L V+ D+S +LWD+R M + F GH + A+ + PN +++
Sbjct: 188 MS-LSLAPD--TRLFVSGACDASA--KLWDVREGMCR-QTFTGHESDINAICFFPNGNAF 241
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 251 RNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWN 310
R M + GH + AM W DS LL+ ++D + I WD+ + V +P ++W
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 311 FDIHWYPKIPGVISASSFDGKIGIYNIE 338
+ P ++ D IYN++
Sbjct: 101 MTCAYAPS-GNYVACGGLDNICSIYNLK 127
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 138 LLASGADDGEICIWDLSAPAEPSHFPPLR------------GNGSAAQGEISFVSW---- 181
LL S + DG++ IWD S H PLR GN A G + S
Sbjct: 69 LLLSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
Query: 182 ----NSKVQHILA------------------STSYNGTTVVWDLKKQKPVISFSESIKRR 219
N +V LA ++S + T +WD++ + +F+
Sbjct: 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 220 CSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSY 279
S L PD T+L V+ D+S +LWD+R M + F GH + A+ + PN +++
Sbjct: 188 MS-LSLAPD--TRLFVSGACDASA--KLWDVREGMCR-QTFTGHESDINAICFFPNGNAF 241
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 LSLISSGETGGNPLIAHLSR-------------HKGPVRGLEFNSFTPNLLASGADDGEI 148
++LI GG L+ L + H PV + + N++ASG++D +
Sbjct: 47 MALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTV 106
Query: 149 CIWDL--SAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQ 206
+W++ P P + G + + V+W+ Q++L S + +VWD+
Sbjct: 107 MVWEIPDGGLVLPLREPVITLEGHTKR--VGIVAWHPTAQNVLLSAGXDNVILVWDVGTG 164
Query: 207 KPVISF 212
V++
Sbjct: 165 AAVLTL 170
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 255 SPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSEL 303
PV GHTK V ++W P + LL+ DN + WD +G V L
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 262 GHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSG-------EIVSELPAGTNWNFDIH 314
GHT V+ ++W P++ + + + ++D + W+ G E V L T +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 315 WYPKIPGVISASSFDGKIGIYNI 337
W+P V+ ++ D I ++++
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 LSLISSGETGGNPLIAHLSR-------------HKGPVRGLEFNSFTPNLLASGADDGEI 148
++LI GG L+ L + H PV + + N++ASG++D +
Sbjct: 47 MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV 106
Query: 149 CIWDL--SAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQ 206
+W++ P P + G + + V+W+ Q++L S + +VWD+
Sbjct: 107 MVWEIPDGGLVLPLREPVITLEGHTKR--VGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Query: 207 KPVISF 212
V++
Sbjct: 165 AAVLTL 170
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 262 GHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSG-------EIVSELPAGTNWNFDIH 314
GHT V+ ++WCP++ + + + ++D + W+ G E V L T +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 315 WYPKIPGVISASSFDGKIGIYNI 337
W+P V+ ++ D I ++++
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 255 SPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSEL 303
PV GHTK V ++W P + LL+ DN + WD +G V L
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 169 GSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPD 228
G + ++ V+W S+ ++AS S G +W++ +++ ++ ++ K + D
Sbjct: 90 GVQTEAGVTDVAWVSEKGILVASDS--GAVELWEILEKESLL-VNKFAKYE------HDD 140
Query: 229 VATQLVVASDEDSSPA------LRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLT 282
+ L V SD + + +++WD+ + + +K + H+ V ++ CP + L+
Sbjct: 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDL-SQKAVLKSYNAHSSEVNCVAACPGKDTIFLS 199
Query: 283 CAKDNRTICWDTVSGEIVSELP--AGTNWNFDIHWYPKIPGVISASSFDGKIGIYNIE 338
C +D R + WDT + + + A + W+P+ + G + + NI+
Sbjct: 200 CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 141 SGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVV 200
SG D + +WDLS A + +A E++ V+ I S +G ++
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSY-------NAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 201 WDLKKQKPV--ISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVK 258
WD +K KP I F S SV W+P+ D + + L +++N S
Sbjct: 209 WDTRKPKPATRIDFCASDTIPTSV-TWHPEKDDTFACG---DETGNVSLVNIKNPDSAQT 264
Query: 259 EFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSEL 303
V H++ + +++ + S +L + ++D D E+ +L
Sbjct: 265 SAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 87 VAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDG 146
+ G DG I +W+ ++ + G + L H G V L+F+ F + S + D
Sbjct: 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDD 405
Query: 147 EICIWDL----SAPAEPSHFP 163
I IWD +A AEP P
Sbjct: 406 TILIWDFLNDPAAQAEPPRSP 426
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 58 VGESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIA 117
V + + E L K G + LV G D +I +W+ E G +
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI-------ECGACLRV- 331
Query: 118 HLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSA---PAEPSHFPPLRGNGSAAQG 174
L H+ VR + F++ + SGA DG+I +WDL A P P+ LR G
Sbjct: 332 -LEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR-TLVEHSG 386
Query: 175 EISFVSWNSKVQHILASTSYNGTTVVWDL 203
+ + ++ + + S+S++ T ++WD
Sbjct: 387 RVFRLQFD---EFQIVSSSHDDTILIWDF 412
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 61 SPSSERFNRLAWGKNGS-GSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHL 119
SP+ R+ G + DF + D +I +WN T + L
Sbjct: 242 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN---------TSTCEFVRTL 292
Query: 120 SRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFV 179
+ HK RG+ + L+ SG+ D I +WD+ A L G+ + + +
Sbjct: 293 NGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGA---CLRVLEGH----EELVRCI 342
Query: 180 SWNSKVQHILASTSYNGTTVVWDL 203
+++K + S +Y+G VWDL
Sbjct: 343 RFDNKR---IVSGAYDGKIKVWDL 363
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 232 QLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTIC 291
Q +V+ D++ +++WD +NT+ + GHT V+ + + D ++T + D+
Sbjct: 144 QKIVSGLRDNT--IKIWD-KNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRV 197
Query: 292 WDTVSGEIVSEL 303
WD +GE+++ L
Sbjct: 198 WDVNTGEMLNTL 209
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 232 QLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTIC 291
++++ DS+ +R+WD+ NT + + H + V+ + + ++ ++TC+KD
Sbjct: 184 RVIITGSSDST--VRVWDV-NTGEMLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAV 237
Query: 292 WD-------TVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNIEGC 340
WD T+ +V A +FD + ++SAS D I ++N C
Sbjct: 238 WDMASPTDITLRRVLVGHRAAVNVVDFDDKY------IVSASG-DRTIKVWNTSTC 286
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 42/228 (18%)
Query: 85 GLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSR-HKGPVRGLEFNSF-TPNLLASG 142
G++ G D ++ +W+ I G H+ H VR L+ + + +G
Sbjct: 174 GILVSGSTDRTVRVWD----IKKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223
Query: 143 ADDGEICIWDLSAPAEPS-------HFPPLRGNG--------SAAQGEISFVSWNSKVQH 187
+ D + +W L P E S H PL + +G ++ V S +
Sbjct: 224 SRDNTLHVWKL--PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 281
Query: 188 ILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRL 247
I+ S SY+ T +VWD+ + K + S R S + D + +++ D++ +R+
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY---DHERKRCISASMDTT--IRI 336
Query: 248 WDMRNTMSPVKEFVGHTK--GVIAMSWCPNDSSYLLTCAKDNRTICWD 293
WD+ N + GHT G++ +S +L++ A D WD
Sbjct: 337 WDLENG-ELMYTLQGHTALVGLLRLS-----DKFLVSAAADGSIRGWD 378
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 251 RNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWN 310
R M + GH + AM W DS L++ ++D + I WD+ + V +P ++W
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 111
Query: 311 FDIHWYPKIPGVISASSFDGKIGIYNIE 338
+ P ++ D IYN++
Sbjct: 112 MTCAYAPS-GNYVACGGLDNICSIYNLK 138
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 138 LLASGADDGEICIWDLSAPAEPSHFPPLR------------GNGSAAQGEISFVSW---- 181
LL S + DG++ IWD S H PLR GN A G + S
Sbjct: 80 LLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 138
Query: 182 ----NSKVQHILA------------------STSYNGTTVVWDLKKQKPVISFSESIKRR 219
N +V LA ++S + T +WD++ + +F+
Sbjct: 139 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 198
Query: 220 CSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSY 279
S L PD T+L V+ D+S +LWD+R M + F GH + A+ + PN +++
Sbjct: 199 MS-LSLAPD--TRLFVSGACDASA--KLWDVREGMCR-QTFTGHESDINAICFFPNGNAF 252
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 251 RNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWN 310
R M + GH + AM W DS L++ ++D + I WD+ + V +P ++W
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 311 FDIHWYPKIPGVISASSFDGKIGIYNIE 338
+ P ++ D IYN++
Sbjct: 101 MTCAYAPS-GNYVACGGLDNICSIYNLK 127
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 138 LLASGADDGEICIWDLSAPAEPSHFPPLR------------GNGSAAQGEISFVSW---- 181
LL S + DG++ IWD S H PLR GN A G + S
Sbjct: 69 LLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
Query: 182 ----NSKVQHILA------------------STSYNGTTVVWDLKKQKPVISFSESIKRR 219
N +V LA ++S + T +WD++ + +F+
Sbjct: 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 220 CSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSY 279
S L PD T+L V+ D+S +LWD+R M + F GH + A+ + PN +++
Sbjct: 188 MS-LSLAPD--TRLFVSGACDASA--KLWDVREGMCR-QTFTGHESDINAICFFPNGNAF 241
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 251 RNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWN 310
R M + GH + AM W DS L++ ++D + I WD+ + V +P ++W
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 311 FDIHWYPKIPGVISASSFDGKIGIYNIE 338
+ P ++ D IYN++
Sbjct: 101 MTCAYAPS-GNYVACGGLDNICSIYNLK 127
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 138 LLASGADDGEICIWDLSAPAEPSHFPPLR------------GNGSAAQGEISFVSW---- 181
LL S + DG++ IWD S H PLR GN A G + S
Sbjct: 69 LLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
Query: 182 ----NSKVQHILA------------------STSYNGTTVVWDLKKQKPVISFSESIKRR 219
N +V LA ++S + T +WD++ + +F+
Sbjct: 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 220 CSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSY 279
S L PD T+L V+ D+S +LWD+R M + F GH + A+ + PN +++
Sbjct: 188 MS-LSLAPD--TRLFVSGACDASA--KLWDVREGMCR-QTFTGHESDINAICFFPNGNAF 241
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 23/218 (10%)
Query: 81 DFSLGLVAGGLVDGSIDI----WNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTP 136
DFS G++A G D I + ++ +LI + + HK +R + + T
Sbjct: 21 DFSQGILATGSTDRKIKLVSVKYDDFTLID---------VLDETAHKKAIRSVAWRPHT- 70
Query: 137 NLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNG 196
+LLA+G+ D + IW A+ + L + E+ V+W++ + LA+ S +
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDK 129
Query: 197 TTVVWDLK---KQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLW-DMRN 252
+ +W+ ++ IS + + + W+P A L+ +S D + +R+W D +
Sbjct: 130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA--LLASSSYDDT--VRIWKDYDD 185
Query: 253 TMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTI 290
V GH V + + + + L D+ T+
Sbjct: 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 217 KRRCSVLQWNPDVATQLVVASDEDSSPALRLW------DMRNTMSPVKEFVGHTKGVIAM 270
K+ + W P T L+ A DS+ + +W D M + GH V +
Sbjct: 58 KKAIRSVAWRP--HTSLLAAGSFDST--VSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 271 SWCPNDSSYLLTCAKDNRTICWDTVSG----EIVSELPAGTNWNFDIHWYPKIPGVISAS 326
+W ND YL TC++D W+T E +S L + + W+P ++++S
Sbjct: 114 AW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASS 171
Query: 327 SFDGKIGIYN 336
S+D + I+
Sbjct: 172 SYDDTVRIWK 181
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 169 GSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPD 228
G + ++ ++W + ++AS S G +W+L + + +I + + C + +
Sbjct: 78 GVQTEAGVADLTWVGERGILVASDS--GAVELWELDENETLI-----VSKFCK-YEHDDI 129
Query: 229 VATQLVVASDEDSSP-----ALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTC 283
V+T V++S + +++WD+ + + + H V ++ P+ S L+C
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVAASPHKDSVFLSC 188
Query: 284 AKDNRTICWDT 294
++DNR + WDT
Sbjct: 189 SEDNRILLWDT 199
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 87 VAGGLVDGSIDIWNPLSLISSGETGGN-PLIAHLSRHKGPVRGLEFNSFTPNLLASGADD 145
VA G +D + I+N L S + GN P+ L+ HKG ++ L +G+ D
Sbjct: 123 VACGGLDSACSIFN---LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 146 GEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKK 205
+WD++ S F +G A ++ +S NS ++ S S + T +WDL+
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTA--DVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 206 QKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMR 251
+ + + +++ PD + SD+ + RL+DMR
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGT---CRLFDMR 279
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 133 SFTPN--LLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILA 190
+F PN +A G D I++LS+ A+ P+ + +G S + + L
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 191 STSYNGTTVVWDLKKQKPVISFSESI--KRRCSVLQWNPD-VATQLVVASDEDSSPALRL 247
+ S + T V+WD+ + + F VL + + + + ++ D++ +RL
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT--VRL 232
Query: 248 WDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSY 279
WD+R T V+ + GH + ++ + P+ +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRF 264
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 19/141 (13%)
Query: 13 VAFAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDRDLLLVGESPSSERFNRLAW 72
AFAP+ +A G + A IF L Q+ DRD G P S R+
Sbjct: 114 CAFAPNGQSVACGGLDSAC----------SIFNLSSQA-DRD----GNMPVS----RVLT 154
Query: 73 GKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFN 132
G G S + L+ GS D L +++G+ S H V L N
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 133 SFTPNLLASGADDGEICIWDL 153
S N+ SG+ D + +WDL
Sbjct: 215 SLNANMFISGSCDTTVRLWDL 235
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 254 MSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNFDI 313
+ + GH+ V ++ W P + +++++ ++D R I W+ ++ + + W +
Sbjct: 56 LVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC 114
Query: 314 HWYPKIPGVISASSFDGKIGIYNI 337
+ P V + D I+N+
Sbjct: 115 AFAPNGQSV-ACGGLDSACSIFNL 137
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 174 GEISFVSWNSKVQHILASTSYNGTTVVWD-LKKQKPVISFSESIKRRCSVLQWNPDVAT- 231
G++ + W + ++ + S S +G +VW+ L QK + +IK C W + A
Sbjct: 67 GKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQK-----THAIKLHCP---WVMECAFA 117
Query: 232 ---QLVVASDEDSSPAL----RLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCA 284
Q V DS+ ++ D M + GH + + P+ + L+T +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 285 KDNRTICWDTVSGEIV----SELPAG 306
D + WD +G+ + SE P+G
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSG 203
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 42/228 (18%)
Query: 85 GLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSR-HKGPVRGLEFNSF-TPNLLASG 142
G++ G D ++ +W+ I G H+ H VR L+ + + +G
Sbjct: 174 GILVSGSTDRTVRVWD----IKKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223
Query: 143 ADDGEICIWDLSAPAEPS-------HFPPLRGNG--------SAAQGEISFVSWNSKVQH 187
+ D + +W L P E S H PL + +G + V S +
Sbjct: 224 SRDNTLHVWKL--PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGN 281
Query: 188 ILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRL 247
I+ S SY+ T +VWD+ + K + S R S + D + +++ D++ +R+
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY---DHERKRCISASXDTT--IRI 336
Query: 248 WDMRNTMSPVKEFVGHTK--GVIAMSWCPNDSSYLLTCAKDNRTICWD 293
WD+ N GHT G++ +S +L++ A D WD
Sbjct: 337 WDLENG-ELXYTLQGHTALVGLLRLS-----DKFLVSAAADGSIRGWD 378
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 188 ILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQ----LVVASDEDSSP 243
+L S S + T ++W L +++ F K + D+A ++S D +
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT- 99
Query: 244 ALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIV--- 300
LRLWD+R T + K FVGH V ++++ P D+ +L+ + W+ + GE
Sbjct: 100 -LRLWDLR-TGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNIL-GECKFSS 155
Query: 301 SELPAGTNWNFDIHWYPKIPGV---------ISASSFDGKIGIYNIEGCSRYGVGDSNFS 351
+E ++W + + P + ++ +DG++ ++N RY F
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-----TFK 210
Query: 352 AAPLRAPKWYKRPAGASFGFGGK 374
A P G GGK
Sbjct: 211 AHESNVNHLSISPNGKYIATGGK 233
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFP--PLRGNGSAAQGEI 176
L H G V L ++ PNLL S + D + W L+ + P +G+ Q
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD-- 70
Query: 177 SFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVA 236
+ + + L S S++ T +WD+ + ++ + + V+ + D ++++
Sbjct: 71 --CTLTADGAYAL-SASWDKTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 237 SDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPN-----DSSYLLTCAKDNRTIC 291
D + +++W ++ + +GH V + PN DS +++ D
Sbjct: 125 GSRDKT--IKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 292 WDTVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
W+ +I ++ G N N + +I+++ DG+I ++N+
Sbjct: 181 WNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFP--PLRGNGSAAQGEI 176
L H G V L ++ PNLL S + D + W L+ + P +G+ Q
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD-- 70
Query: 177 SFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVA 236
+ + + L S S++ T +WD+ + ++ + + V+ + D ++++
Sbjct: 71 --CTLTADGAYAL-SASWDKTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 237 SDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPN-----DSSYLLTCAKDNRTIC 291
D + +++W ++ + +GH V + PN DS +++ D
Sbjct: 125 GSRDKT--IKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 292 WDTVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
W+ +I ++ G N N + +I+++ DG+I ++N+
Sbjct: 181 WNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFP--PLRGNGSAAQGEI 176
L H G V L ++ PNLL S + D + W L+ + P +G+ Q
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD-- 70
Query: 177 SFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVA 236
+ + + L S S++ T +WD+ + ++ + + V+ + D ++++
Sbjct: 71 --CTLTADGAYAL-SASWDKTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 237 SDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPN-----DSSYLLTCAKDNRTIC 291
D + +++W ++ + +GH V + PN DS +++ D
Sbjct: 125 GSRDKT--IKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 292 WDTVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
W+ +I ++ G N N + +I+++ DG+I ++N+
Sbjct: 181 WNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFP--PLRGNGSAAQGEI 176
L H G V L ++ PNLL S + D + W L+ + P +G+ Q
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD-- 70
Query: 177 SFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVA 236
+ + + L S S++ T +WD+ + ++ + + V+ + D ++++
Sbjct: 71 --CTLTADGAYAL-SASWDKTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 237 SDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPN-----DSSYLLTCAKDNRTIC 291
D + +++W ++ + +GH V + PN DS +++ D
Sbjct: 125 GSRDKT--IKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 292 WDTVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
W+ +I ++ G N N + +I+++ DG+I ++N+
Sbjct: 181 WNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 116 IAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQG 174
+ L H G VR F S LLA+G D+GEI IW++S PL G+A G
Sbjct: 1126 LHELRGHNGCVRCSAF-SVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 47/208 (22%)
Query: 5 KGINRSASVAFAP--DAPYMAAGTMAGAVDLSFSSSANLEIFK-------LDFQSEDRDL 55
K I + + P DA Y A + G S + L++FK L+ ++ + ++
Sbjct: 607 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV 666
Query: 56 LLVGESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPL 115
L S + +RF +A VD + IWN ++ GE L
Sbjct: 667 LCCAFS-TDDRF-------------------IATCSVDKKVKIWNSMT----GE-----L 697
Query: 116 IAHLSRHKGPVRGLEF-NSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQG 174
+ H V F NS LLA+G+ D + +WDL+ R
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ-------KECRNTMFGHTN 750
Query: 175 EISFVSWNSKVQHILASTSYNGTTVVWD 202
++ + S +LAS S +GT +WD
Sbjct: 751 SVNHCRF-SPDDKLLASCSADGTLKLWD 777
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFP--PLRGNGSAAQGEI 176
L H G V L ++ PNLL S + D + W L+ + P +G+ Q
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD-- 64
Query: 177 SFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVA 236
+ + + L S S++ T +WD+ + ++ + + V+ + D ++++
Sbjct: 65 --CTLTADGAYAL-SASWDKTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 237 SDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPN-----DSSYLLTCAKDNRTIC 291
D + +++W ++ + +GH V + PN DS +++ D
Sbjct: 119 GSRDKT--IKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 292 WDTVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
W+ +I ++ G N N + +I+++ DG+I ++N+
Sbjct: 175 WNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 141 SGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVV 200
SG+ DGE+ +WDL+A F ++ V+++ + I+ S S + T +
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRF-------VGHTKDVLSVAFSLDNRQIV-SASRDRTIKL 498
Query: 201 WD-LKKQKPVISF-SESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVK 258
W+ L + K IS E + S ++++P+ +V++ D + +++W++ N
Sbjct: 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT--VKVWNLSNC-KLRS 555
Query: 259 EFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGT 307
GHT V ++ P D S + KD + WD G+ + L A +
Sbjct: 556 TLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 38 SANLEIFKLDFQSEDRDLLLVGESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSID 97
S + +++ Q E R L ++ + E F AW + + S L VAG G I
Sbjct: 79 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH--PLLAVAGSR--GIIR 134
Query: 98 IWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPA 157
I NP+++ I H H + L+F+ PNLL S + D + +W++
Sbjct: 135 IINPITM---------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 185
Query: 158 EPSHFPPLRGN 168
+ F + G+
Sbjct: 186 LVAIFGGVEGH 196
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 253 TMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVS 301
TM +K +VGH + + + P D + LL+ +KD+ W+ + +V+
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 188
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 24/199 (12%)
Query: 139 LASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSW-NSKVQHILASTSYNGT 197
LA+ + D I I+++ L + +G + V W + K ILAS SY+G
Sbjct: 26 LATCSSDKTIKIFEVEGETHK-----LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80
Query: 198 TVVWDLKKQK-PVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSP 256
++W + + I+ + +QW P L++ + D ++ + T SP
Sbjct: 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140
Query: 257 VKEFVGHTKGVIAMSWCP------------NDSSYLLTCAKDNRTICW----DTVSGEIV 300
+ H GV + SW P +S +T DN W D + +
Sbjct: 141 II-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 199
Query: 301 SELPAGTNWNFDIHWYPKI 319
S L ++W D+ W P +
Sbjct: 200 STLEGHSDWVRDVAWSPTV 218
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 24/199 (12%)
Query: 139 LASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSW-NSKVQHILASTSYNGT 197
LA+ + D I I+++ L + +G + V W + K ILAS SY+G
Sbjct: 24 LATCSSDKTIKIFEVEGETHK-----LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 198 TVVWDLKKQK-PVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSP 256
++W + + I+ + +QW P L++ + D ++ + T SP
Sbjct: 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138
Query: 257 VKEFVGHTKGVIAMSWCP------------NDSSYLLTCAKDNRTICW----DTVSGEIV 300
+ H GV + SW P +S +T DN W D + +
Sbjct: 139 II-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197
Query: 301 SELPAGTNWNFDIHWYPKI 319
S L ++W D+ W P +
Sbjct: 198 STLEGHSDWVRDVAWSPTV 216
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 38 SANLEIFKLDFQSEDRDLLLVGESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSID 97
S + +++ Q E R L ++ + E F AW + + S L VAG G I
Sbjct: 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH--PLLAVAGS--RGIIR 98
Query: 98 IWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPA 157
I NP+++ I H H + L+F+ PNLL S + D + +W++
Sbjct: 99 IINPITM---------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
Query: 158 EPSHFPPLRGN 168
+ F + G+
Sbjct: 150 LVAIFGGVEGH 160
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 253 TMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVS 301
TM +K +VGH + + + P D + LL+ +KD+ W+ + +V+
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 152
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 38 SANLEIFKLDFQSEDRDLLLVGESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSID 97
S + +++ Q E R L ++ + E F AW + + S L VAG G I
Sbjct: 42 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH--PLLAVAGS--RGIIR 97
Query: 98 IWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPA 157
I NP+++ I H H + L+F+ PNLL S + D + +W++
Sbjct: 98 IINPITM---------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
Query: 158 EPSHFPPLRGN 168
+ F + G+
Sbjct: 149 LVAIFGGVEGH 159
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 253 TMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVS 301
TM +K +VGH + + + P D + LL+ +KD+ W+ + +V+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 151
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 38 SANLEIFKLDFQSEDRDLLLVGESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSID 97
S + +++ Q E R L ++ + E F AW + + S L VAG G I
Sbjct: 42 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH--PLLAVAGS--RGIIR 97
Query: 98 IWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPA 157
I NP+++ I H H + L+F+ PNLL S + D + +W++
Sbjct: 98 IINPITM---------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
Query: 158 EPSHFPPLRGN 168
+ F + G+
Sbjct: 149 LVAIFGGVEGH 159
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 253 TMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVS 301
TM +K +VGH + + + P D + LL+ +KD+ W+ + +V+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 151
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 38 SANLEIFKLDFQSEDRDLLLVGESPSSERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSID 97
S + +++ Q E R L ++ + E F AW + + S L VAG G I
Sbjct: 38 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH--PLLAVAGS--RGIIR 93
Query: 98 IWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPA 157
I NP+++ I H H + L+F+ PNLL S + D + +W++
Sbjct: 94 IINPITM---------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 144
Query: 158 EPSHFPPLRGN 168
+ F + G+
Sbjct: 145 LVAIFGGVEGH 155
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 253 TMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVS 301
TM +K +VGH + + + P D + LL+ +KD+ W+ + +V+
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 147
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 19/165 (11%)
Query: 173 QGEISFVSW-NSKVQHILASTSYNGTTVVWDLKKQK-PVISFSESIKRRCSVLQWNPDVA 230
+G + V W + K ILAS SY+G ++W + + I+ + +QW P
Sbjct: 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112
Query: 231 TQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCP------------NDSS 278
L++ + D ++ + T SP+ H GV + SW P +S
Sbjct: 113 GPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 279 YLLTCAKDNRTICW----DTVSGEIVSELPAGTNWNFDIHWYPKI 319
+T DN W D + + S L ++W D+ W P +
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 43/236 (18%)
Query: 93 DGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWD 152
D +I +W+ ETG L H V+ + F+ + LLAS + D I +WD
Sbjct: 129 DATIKVWDY-------ETGDFERT--LKGHTDSVQDISFD-HSGKLLASCSADMTIKLWD 178
Query: 153 LSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISF 212
F +R +S VS HI+ S S + T +W+++ V +F
Sbjct: 179 FQG------FECIR-TMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGYCVKTF 230
Query: 213 SESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSW 272
+ R V P+ L+ + D + +R+W + T E H V +SW
Sbjct: 231 T---GHREWVRMVRPNQDGTLIASCSNDQT--VRVW-VVATKECKAELREHRHVVECISW 284
Query: 273 CPNDSS-------------------YLLTCAKDNRTICWDTVSGEIVSELPAGTNW 309
P S +LL+ ++D WD +G + L NW
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 243 PALRLWDMRNTMSPVKEFVGH---TKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEI 299
+++WD+ M + VGH +GV+ S ++L+CA D WD +
Sbjct: 318 KTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHS----GGKFILSCADDKTLRVWDYKNKRC 372
Query: 300 VSELPAGTNWNFDIHWYPKIPGVISAS 326
+ L A ++ + ++ P V++ S
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGS 399
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 115 LIAHLSR-HKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAP 156
L AHL + H V + +N P LLAS +DDGE+ W P
Sbjct: 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 55 LLLVGESPS--SERFNRLAWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGG 112
L+L+G P+ R LAW G+ L+A D I IW T G
Sbjct: 5 LVLLGRVPAHPDSRCWFLAWNPAGT--------LLASCGGDRRIRIWG---------TEG 47
Query: 113 NPLIAHLSRHKGPVRGLEFNSFTP--NLLASGADDGEICIWDLSAPAEPSHFPPLRGNGS 170
+ I +G R + +++P N LAS + D CIW + + L G+
Sbjct: 48 DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGH-- 104
Query: 171 AAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQK--PVISFSESIKRRCSVLQWNPD 228
+ E+ V+W + ++LA+ S + + VW++ ++ +S S + + W+P
Sbjct: 105 --ENEVKSVAW-APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161
Query: 229 VATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNR 288
L AS +D+ R + + GH V ++++ P S L D+R
Sbjct: 162 -QELLASASYDDTVKLYR--EEEDDWVCCATLEGHESTVWSLAFDP--SGQRLASCSDDR 216
Query: 289 TI 290
T+
Sbjct: 217 TV 218
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 19/165 (11%)
Query: 173 QGEISFVSW-NSKVQHILASTSYNGTTVVWDLKKQK-PVISFSESIKRRCSVLQWNPDVA 230
+G + V W + K ILAS SY+G ++W + + I+ + +QW P
Sbjct: 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112
Query: 231 TQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCP------------NDSS 278
+++ + D ++ + T SP+ H GV + SW P +S
Sbjct: 113 GPMLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 279 YLLTCAKDNRTICW----DTVSGEIVSELPAGTNWNFDIHWYPKI 319
+T DN W D + + S L ++W D+ W P +
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 20/226 (8%)
Query: 119 LSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLSAPAEPSHFP--PLRGNGSAAQGEI 176
L H G V L ++ PNLL S + D + W L+ + P +G+ Q
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD-- 70
Query: 177 SFVSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVA 236
+ + + L S S++ T +WD+ + ++ + + V + D +++
Sbjct: 71 --CTLTADGAYAL-SASWDKTLRLWDVATGE---TYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 237 SDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCPN-----DSSYLLTCAKDNRTIC 291
D + +++W ++ + +GH V + PN DS +++ D
Sbjct: 125 GSRDKT--IKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 292 WDTVSGEIVSELPAGTNWNFDIHWYPKIPGVISASSFDGKIGIYNI 337
W+ +I ++ G N N + +I+++ DG+I ++N+
Sbjct: 181 WNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 24/118 (20%)
Query: 86 LVAGGLVDGSIDIWNPLSLISSGE---TGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASG 142
++ G D ++ IW+ I +G+ T P ++H+ V L+FN N + +
Sbjct: 331 ILVSGNADSTVKIWD----IKTGQCLQTLQGP-----NKHQSAVTCLQFN---KNFVITS 378
Query: 143 ADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWN---SKVQHILASTSYNGT 197
+DDG + +WDL + L GS V W S + + A S NGT
Sbjct: 379 SDDGTVKLWDLKTGEFIRNLVTLESGGSGG------VVWRIRASNTKLVCAVGSRNGT 430
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 134 FTPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQ-HILAST 192
F N + SG+DD + +W + L G+ W+S+++ +I+ S
Sbjct: 127 FCGNRIVSGSDDNTLKVW---SAVTGKCLRTLVGHTGGV--------WSSQMRDNIIISG 175
Query: 193 SYNGTTVVWDLKKQKPVIS-FSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMR 251
S + T VW+ + + + + + + RC L + VV+ D++ LR+WD+
Sbjct: 176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLH------EKRVVSGSRDAT--LRVWDI- 226
Query: 252 NTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPAGTNWNF 311
T + +GH V + + D +++ A D WD + + L TN +
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 312 DIHWYPKIPGV-ISASSFDGKIGIYNIE 338
+ + G+ + + S D I ++++E
Sbjct: 284 SL----QFDGIHVVSGSLDTSIRVWDVE 307
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 93/217 (42%), Gaps = 30/217 (13%)
Query: 87 VAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLEFNSFTPNLLASGADDG 146
V G D ++ +W+ ETG + L H VR ++++ + SGA D
Sbjct: 212 VVSGSRDATLRVWDI-------ETG--QCLHVLMGHVAAVRCVQYDG---RRVVSGAYDF 259
Query: 147 EICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTSYNGTTVVWDLKKQ 206
+ +WD P + L+G+ + + F + + S S + + VWD++
Sbjct: 260 MVKVWD---PETETCLHTLQGHTNRVYS-LQFDGIH------VVSGSLDTSIRVWDVETG 309
Query: 207 KPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKG 266
+ + + L ++ ++V+ + DS+ +++WD++ T ++ G K
Sbjct: 310 NCIHTLTGH-----QSLTSGMELKDNILVSGNADST--VKIWDIK-TGQCLQTLQGPNKH 361
Query: 267 VIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSEL 303
A++ + ++++T + D WD +GE + L
Sbjct: 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 196 GTTVVWDLKKQ----KPVISFS-ESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDM 250
G +WD ++Q ++S + + + C + +P+ Q VVA+ L +WD+
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHC--VDRHPN--QQHVVATGGQDG-MLSIWDV 266
Query: 251 RNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWD 293
R PV H + + + P++ +L TC++D WD
Sbjct: 267 RQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 135 TPNLLASGADDGEICIWDLSAPA-EPSHFPPLRGNGSAAQGEISFVSWNSKVQHILASTS 193
TP +L + G++ IWD EPS L G+ + + V + QH++A+
Sbjct: 202 TPEILTVNSI-GQLKIWDFRQQGNEPSQILSLTGD----RVPLHCVDRHPNQQHVVATGG 256
Query: 194 YNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRLWDMRNT 253
+G +WD+++ +S ++ + + ++P L S++ S L WD +T
Sbjct: 257 QDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGS---LWHWDA-ST 312
Query: 254 MSPVKEFVGHTKG 266
P K + H G
Sbjct: 313 DVPEKSSLFHQGG 325
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 21/166 (12%)
Query: 173 QGEISFVSW-NSKVQHILASTSYNGTTVVWDLKKQK-PVISFSESIKRRCSVLQWNP-DV 229
+G + V W + K ILAS SY+G +W + + I+ + +QW P +
Sbjct: 53 EGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112
Query: 230 ATQLVVASDEDSSPALRLWDMRNTMSPVKEFVGHTKGVIAMSWCP------------NDS 277
L+VAS + + T SP+ H GV + SW P +S
Sbjct: 113 GPXLLVASSDGKVSVVEF-KENGTTSPII-IDAHAIGVNSASWAPATIEEDGEHNGTKES 170
Query: 278 SYLLTCAKDNRTICW----DTVSGEIVSELPAGTNWNFDIHWYPKI 319
+T DN W D + + S L ++W D+ W P +
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 188 ILASTSYNGTTVVWDLKKQKPVISFSESIKRRCSVLQWNPDVATQLVVASDEDSSPALRL 247
LA+ + + +WD++ +K V+ + ++ L + P +LV S + + +R+
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPS-GDKLVSGSGDRT---VRI 191
Query: 248 WDMRNTMSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELPA 305
WD+R + + GV ++ P D Y+ + D WD+ +G +V L +
Sbjct: 192 WDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 48/303 (15%)
Query: 13 VAFAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQS-EDRDLLLVGESPSSERFNR-L 70
V F+ D Y+A G S + + D + +D + L SPSS+ + R +
Sbjct: 70 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129
Query: 71 AWGKNGSGSEDFSLGLVAGGLVDGSIDIWNPLSLISSGETGGNPLIAHLSRHKGPVRGLE 130
+ +G +A G D I IW + ++ L H+ + L+
Sbjct: 130 CFSPDGK--------FLATGAEDRLIRIW---------DIENRKIVMILQGHEQDIYSLD 172
Query: 131 FNSF-TPNLLASGADDGEICIWDLSAPAEPSHFPPLRGNGSAAQGEISFVSWNSKVQHIL 189
+ F + + L SG+ D + IWDL G ++ V+ + +
Sbjct: 173 Y--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------VTTVAVSPGDGKYI 222
Query: 190 ASTSYNGTTVVWDLKK---QKPVISFSES-IKRRCSVLQWNPDVATQLVVASDEDSSPAL 245
A+ S + VWD + + + S +ES + SV Q VV+ D S +
Sbjct: 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS--V 280
Query: 246 RLWDMRNTMSPVKE-----------FVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDT 294
+LW+++N + ++GH V++++ ND Y+L+ +KD + WD
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDK 339
Query: 295 VSG 297
SG
Sbjct: 340 KSG 342
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 41/211 (19%)
Query: 111 GGNPLIAHLSRHKGPVRGLEF-NSFTPNLLASGADDGEICIW-DLSAPAEPSHFPPLRGN 168
GG LIA L H+GPV + + + N+LAS + D ++ IW + + E SH
Sbjct: 45 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH------E 98
Query: 169 GSAAQGEISFVSWN-SKVQHILASTSYNGTTVV--------WDLKKQKPVISFSESIKRR 219
+ ++ V W ILA S +G + W++KK I+ + +I
Sbjct: 99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK----INNAHTIG-- 152
Query: 220 CSVLQWNPDVATQLVVASDEDSSP-------------ALRLW--DMRNTMSPVKEFVGHT 264
C+ + W P V ++ P ++LW + ++ H+
Sbjct: 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212
Query: 265 KGVIAMSWCPND---SSYLLTCAKDNRTICW 292
V ++W P+ +S + +C++D R W
Sbjct: 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
>pdb|2PM6|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
Length = 399
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 355 LRAPKWYKRPA-GASFGFGGKLVSFHP 380
L+AP WY P+ A + FGGKLV P
Sbjct: 7 LQAPTWYGEPSPAAHWAFGGKLVQITP 33
>pdb|3MZL|B Chain B, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|D Chain D, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|F Chain F, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|H Chain H, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 345
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 355 LRAPKWYKRPA-GASFGFGGKLVSFHP 380
L+AP WY P+ A + FGGKLV P
Sbjct: 4 LQAPTWYGEPSPAAHWAFGGKLVQITP 30
>pdb|2PM7|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 399
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 355 LRAPKWYKRPA-GASFGFGGKLVSFHP 380
L+AP WY P+ A + FGGKLV P
Sbjct: 7 LQAPTWYGEPSPAAHWAFGGKLVQITP 33
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 116 IAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLS 154
+ L H G VR F S LLA+G D+GEI IW++S
Sbjct: 1127 LHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVS 1164
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 262 GHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIV 300
H V+ ++ +D SY+ TC+ D + WD+ +G++V
Sbjct: 662 AHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLV 699
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 116 IAHLSRHKGPVRGLEFNSFTPNLLASGADDGEICIWDLS 154
+ L H G VR F S LLA+G D+GEI IW++S
Sbjct: 1120 LHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVS 1157
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 262 GHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIV 300
H V+ ++ +D SY+ TC+ D + WD+ +G++V
Sbjct: 655 AHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLV 692
>pdb|2YRU|A Chain A, Solution Structure Of Mouse Steroid Receptor Rna Activator
1 (Sra1) Protein
Length = 118
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 638 KKREIEDNSRKIGALFAKLNSGDISKNAADKLVQLCQALDNNDFGTALQIQVLLTTSDWD 697
KK+ +D SR++ L + G +S ++ L Q L ++ + A I L
Sbjct: 34 KKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDHVT 93
Query: 698 ECNFWLATLKRMIKTRQNV 716
E + W+ +KR+I ++++
Sbjct: 94 EVSQWMVGVKRLIAEKKSL 112
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 254 MSPVKEFVGHTKGVIAMSWCPNDSSYLLTCAKDNRTICWDTVSGEIVSELP--AGTNWNF 311
M +K GH + + + + + L +C+KD+ W +++GE + L GT W+
Sbjct: 23 MKAIK-LTGHERPLTQVKY-NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
Query: 312 DIHWYPK 318
D+ + K
Sbjct: 81 DVDCFTK 87
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 12/152 (7%)
Query: 109 ETGGNPLIAHLSRHKGPVRGLEF--NSFTPNLLASGADDGEICIWDLSAPAEPSHFPPLR 166
+ G L+ + + K P++ F S LA+G G + IW+L AP P + ++
Sbjct: 52 QHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY--SVK 108
Query: 167 GNGSAAQGEISFVSWNSKVQH-ILASTSYNGTTVVWDLKKQKPVISFSESI----KRRCS 221
G+ + + S +GT VWD +++ ++ E + KR C
Sbjct: 109 GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168
Query: 222 VLQW-NPDVATQLVVASDEDSSPALRLWDMRN 252
+ + N + VV + D+ ++L+D+RN
Sbjct: 169 TVAFGNAYNQEERVVCAGYDNGD-IKLFDLRN 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,026,892
Number of Sequences: 62578
Number of extensions: 1048539
Number of successful extensions: 2094
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1693
Number of HSP's gapped (non-prelim): 268
length of query: 719
length of database: 14,973,337
effective HSP length: 106
effective length of query: 613
effective length of database: 8,340,069
effective search space: 5112462297
effective search space used: 5112462297
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)