BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046453
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MSQ|A Chain A, Crystal Structure Of A Putative Ubiquinone Biosynthesis
           Protein (Npun02000094) From Nostoc Punctiforme Pcc 73102
           At 2.85 A Resolution
 pdb|3MSQ|B Chain B, Crystal Structure Of A Putative Ubiquinone Biosynthesis
           Protein (Npun02000094) From Nostoc Punctiforme Pcc 73102
           At 2.85 A Resolution
 pdb|3MSQ|C Chain C, Crystal Structure Of A Putative Ubiquinone Biosynthesis
           Protein (Npun02000094) From Nostoc Punctiforme Pcc 73102
           At 2.85 A Resolution
 pdb|3MSQ|D Chain D, Crystal Structure Of A Putative Ubiquinone Biosynthesis
           Protein (Npun02000094) From Nostoc Punctiforme Pcc 73102
           At 2.85 A Resolution
          Length = 224

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 51  LQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPD--DRPPVR 108
           +  +K+ PE  A+  ER       +     LP  T G  YA    +R F P    + PV 
Sbjct: 53  VDELKKIPEVNALFSERWLPAPFNLDDLAKLPEGTLGHVYAREXKARGFDPYFYKKVPV- 111

Query: 109 FMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSAR 168
               D+++Y+    R  HD +H + G  TN+ GE  L+     Q  +P+    +  G   
Sbjct: 112 ---VDDISYLKXLWRSTHDIYHVVAGFDTNVFGEIGLQAFFLAQTPIPISVXLLSFGXVX 168

Query: 169 FSEKQ 173
            S  Q
Sbjct: 169 ISLYQ 173


>pdb|3KB4|A Chain A, Crystal Structure Of The Alr8543 Protein In Complex With
           Geranylgeranyl Monophosphate And Magnesium Ion From
           Nostoc Sp. Pcc 7120, Northeast Structural Genomics
           Consortium Target Nsr141
 pdb|3KB4|B Chain B, Crystal Structure Of The Alr8543 Protein In Complex With
           Geranylgeranyl Monophosphate And Magnesium Ion From
           Nostoc Sp. Pcc 7120, Northeast Structural Genomics
           Consortium Target Nsr141
 pdb|3KB4|C Chain C, Crystal Structure Of The Alr8543 Protein In Complex With
           Geranylgeranyl Monophosphate And Magnesium Ion From
           Nostoc Sp. Pcc 7120, Northeast Structural Genomics
           Consortium Target Nsr141
 pdb|3KB4|D Chain D, Crystal Structure Of The Alr8543 Protein In Complex With
           Geranylgeranyl Monophosphate And Magnesium Ion From
           Nostoc Sp. Pcc 7120, Northeast Structural Genomics
           Consortium Target Nsr141
          Length = 225

 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 35  IAALGETTGRP-AFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASF 93
           I  L      P   + V+  +  +P+G+    +RP +    +     LP  T G  YA  
Sbjct: 31  IGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPXLGKIDLEQLHQLPNYTLGYXYADH 90

Query: 94  MGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQM 153
                 +P   PPV         ++A    E HD WH + G  T+  GE  L+     Q+
Sbjct: 91  XIRNQLTP---PPVNENVNHPFXFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQL 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,486,787
Number of Sequences: 62578
Number of extensions: 260942
Number of successful extensions: 653
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 3
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)