Query 046453
Match_columns 225
No_of_seqs 150 out of 380
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 12:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3244 Protein involved in ub 100.0 6.3E-75 1.4E-79 489.9 17.7 221 4-224 40-263 (267)
2 PF05019 Coq4: Coenzyme Q (ubi 100.0 7E-76 1.5E-80 504.4 11.2 219 4-222 2-222 (222)
3 COG5031 COQ4 Uncharacterized p 100.0 1.2E-57 2.7E-62 383.0 18.0 217 4-222 12-233 (235)
4 KOG0904 Phosphatidylinositol 3 53.1 12 0.00027 38.6 3.0 51 85-151 947-1004(1076)
5 PF04214 DUF411: Protein of un 44.0 19 0.0004 25.7 2.0 26 59-87 44-69 (70)
6 TIGR00802 nico high-affinity n 41.6 26 0.00056 31.5 3.0 60 129-189 148-214 (280)
7 PF07319 DnaI_N: Primosomal pr 36.3 34 0.00073 25.3 2.5 32 46-77 20-52 (94)
8 PF13496 DUF4120: Domain of un 33.6 12 0.00026 27.7 -0.3 51 30-88 6-56 (95)
9 COG3376 HoxN High-affinity nic 32.5 52 0.0011 30.1 3.4 40 122-161 187-233 (342)
10 COG2362 DppA D-aminopeptidase 28.4 38 0.00082 30.1 1.8 68 128-195 114-212 (274)
11 PF06952 PsiA: PsiA protein; 26.6 81 0.0018 27.7 3.5 27 1-27 1-29 (238)
12 PF07631 PSD4: Protein of unkn 23.1 86 0.0019 24.6 2.8 38 29-66 18-57 (128)
13 PF08763 Ca_chan_IQ: Voltage g 22.5 53 0.0011 20.3 1.2 13 84-96 4-16 (35)
14 PF05875 Ceramidase: Ceramidas 22.0 17 0.00037 31.7 -1.5 18 124-141 214-231 (262)
15 COG2969 SspB Stringent starvat 21.8 60 0.0013 26.4 1.7 18 86-103 12-29 (155)
16 PRK09775 putative DNA-binding 21.0 73 0.0016 30.4 2.4 24 80-103 112-136 (442)
17 KOG0400 40S ribosomal protein 20.7 69 0.0015 25.8 1.8 18 85-102 66-83 (151)
18 PRK13704 plasmid SOS inhibitio 20.6 1.1E+02 0.0024 26.9 3.1 26 1-26 1-28 (240)
19 PF10070 DUF2309: Uncharacteri 20.2 18 0.00039 37.0 -2.0 55 13-69 500-556 (788)
No 1
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.3e-75 Score=489.92 Aligned_cols=221 Identities=52% Similarity=0.925 Sum_probs=216.7
Q ss_pred CCcccCChHHHHHHHHHHHHHhhcCCCCchhhHHhhhccCc-hhHHHHHHHHhCCHHHHHHHhcCCCCCcccch--hhcc
Q 046453 4 GARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGR-PAFESVLQRMKRSPEGRAVLLERPRVIYEKVG--HAWD 80 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~dp~~~d~v~~l~e~~~~-~a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d--~l~~ 80 (225)
++|+|+|++||+++++||+++++.||.|+|||+++||+||. ++++.+.++|++|++||+||+|||+|++.++| .|++
T Consensus 40 ~~hvPlsp~qr~lL~aGSa~~al~~P~RgDmIa~LGEtTg~p~~Le~l~~~M~~d~~GrrIL~ekPRi~t~tld~~~L~~ 119 (267)
T KOG3244|consen 40 RGHVPLSPLQRLLLGAGSAIMALVDPRRGDMIAALGETTGKPPALENLLDRMLSDEEGRRILLEKPRITTETLDLKKLRT 119 (267)
T ss_pred cCCCCCCHHHHHHHHHhHHHHHhcCcccccHHHHhccccCCchHHHHHHHHHhcCHHHHHHHHhCCCccccccChHHHHh
Confidence 79999999999999999999999999999999999999998 78999999999999999999999999999988 7889
Q ss_pred CCCCChHHHHHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHH
Q 046453 81 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFL 160 (225)
Q Consensus 81 lP~gSLG~~Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l 160 (225)
||+||||++|++||++++++||.|++|+|++|++.+||++|||||||++|+++|++|+++||+++||||+.|+|+|||++
T Consensus 120 LP~nTfG~~Y~~fl~~~nvsPDtR~pvrFidd~e~AYvmqRYRE~HDf~Hti~~mPTNilGEv~vK~~E~~q~GLPMc~l 199 (267)
T KOG3244|consen 120 LPENTFGKAYVKFLDRENVSPDTRPPVRFIDDPELAYVMQRYRECHDFYHTILNMPTNILGEVTVKWLEGVQMGLPMCIL 199 (267)
T ss_pred CCCccHHHHHHHHHhhcCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhcCCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCHHHHHHHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCCCCC
Q 046453 161 SVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224 (225)
Q Consensus 161 ~~~~g~~~~~~~~~~~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~~~~ 224 (225)
+++||++|+++++++.+++.|+|||++.|++|++||++|||++|+++|+++|+|+||+++|..+
T Consensus 200 g~ifG~~RL~~kqr~~l~~~ylPWavr~G~~ak~lm~vYwE~~~e~dl~~vR~el~It~~p~~~ 263 (267)
T KOG3244|consen 200 GAIFGPVRLNEKQRSRLLKHYLPWAVRNGLNAKPLMNVYWERHFEKDLEEVRKELGITPAPQLP 263 (267)
T ss_pred hhccchhhcCHHHHHHHHHhhccHHHhcCcCCCcchhhHHHHHHHHHHHHHHHHhCCccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999988643
No 2
>PF05019 Coq4: Coenzyme Q (ubiquinone) biosynthesis protein Coq4; InterPro: IPR007715 Coenzyme Q biosynthesis Coq4p (also known as Ubiquinone biosynthesis protein COQ4) was shown to peripherally associate with the matrix face of the mitochondrial inner membrane. The putative mitochondrial- targeting sequence present at the N terminus of the polypeptide efficiently imports it to mitochondria. The function of Coq4p is unknown, although its presence is required to maintain a steady-state level of Coq7p, another component of the Q biosynthetic pathway [].; GO: 0006744 ubiquinone biosynthetic process; PDB: 3MSQ_D 3KB4_B.
Probab=100.00 E-value=7e-76 Score=504.39 Aligned_cols=219 Identities=48% Similarity=0.822 Sum_probs=150.6
Q ss_pred CCcccCChHHHHHHHHHHHHHhhcCCCCchhhHHhhhccCchhHHHHHHHHhCCHHHHHHHhcCCCCCcccc--hhhccC
Q 046453 4 GARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKV--GHAWDL 81 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~dp~~~d~v~~l~e~~~~~a~~~~~~~m~~~p~g~~ll~erp~~~~~~~--d~l~~l 81 (225)
.+|||+|++||++++++|++.++.||+|+|+||+++|+++++++++++++|++||+||+||+|||++++.++ |.|++|
T Consensus 2 ~~~~p~~~~~~~~l~~~sa~~~l~~p~~~d~V~~l~e~~~~~al~~~~~~m~~dp~Gr~il~erp~i~~~~~d~~~L~~l 81 (222)
T PF05019_consen 2 PGHIPLSPLQKALLAAGSAVRALRDPERTDMVAALGEATGGPALERMRQRMLSDPEGRRILEERPRITSSTLDLDYLRAL 81 (222)
T ss_dssp -------------------------------HHHHHHHHS-HHHHHHHHHHTTSHHHHHHHHH-------S--HHHHCTS
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHhccHHHHHHHHHHHHcCHHHHHHHHcCCCCCcccCCHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999999998766 678899
Q ss_pred CCCChHHHHHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHHH
Q 046453 82 PPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLS 161 (225)
Q Consensus 82 P~gSLG~~Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l~ 161 (225)
|+|||||+|++||+++||+||++.+|++++|+|.+||++|||+||||||||||||||++||++||||+++|+++|+++++
T Consensus 82 P~gTlG~~Y~~fm~~~gl~pd~r~~v~~v~d~e~aYv~~R~re~HDi~HvLtG~~td~~GEi~lk~f~~~Q~~~P~~~l~ 161 (222)
T PF05019_consen 82 PEGTLGRAYADFMDRNGLSPDGRPPVRFVDDPELAYVMQRYRETHDIWHVLTGYGTDVLGEIALKAFEFAQTGLPMALLG 161 (222)
T ss_dssp -TTBHHHHHHHHHHHTT------------SHSHHHHHHHHHHHCHHHHHHHHT--SSHHHHHHHHHHHHHHS-TCHCHHH
T ss_pred cCCCcHHHHHHHHHHcCCcccCCCCCcCcCCcHHHHHHHHHHcCcchhhHhcCCCCCccchHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCHHHHHHHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCCC
Q 046453 162 VIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA 222 (225)
Q Consensus 162 ~~~g~~~~~~~~~~~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~~ 222 (225)
+++|++++++.++..++..+++||+++|++|++|++++||++|++||+|||++|||+++|.
T Consensus 162 ~~~g~~~l~~~~~~~~~~~~~~~a~~~G~~a~~L~~~~wE~~~e~pLee~R~~LgI~~~p~ 222 (222)
T PF05019_consen 162 ALFGPLRLKPEERQRLLQRYLPWAIRRGRRAKPLMAVYWEELWEKPLEEVRRELGIEPPPD 222 (222)
T ss_dssp HHHHHHHHHHHHHGGHHHHHHHHHHHHHHCS--STT--GGGSTTSBHHHHHHHCTS-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhhhcCCccccchHHHhhCCCHHHHHHHcCCCCCCC
Confidence 9999999999888888888999999999999999999999999999999999999999874
No 3
>COG5031 COQ4 Uncharacterized protein involved in ubiquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-57 Score=383.00 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=201.1
Q ss_pred CCcccCChHHHHHHHHHHHHHhhcCCCCc--hhhHHhhhccCch-hHHHHHHHHhCCHHHHHHHhcCCCCCcccchhhcc
Q 046453 4 GARVQLNGWQQVAVAVGSAVGALLDPRRA--DLIAALGETTGRP-AFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWD 80 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~dp~~~--d~v~~l~e~~~~~-a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d~l~~ 80 (225)
++|+|++..++-.+++.+++.++..|+++ |+|++++++++.+ +++++.+.|++||+|+++++|||.....++|+|.+
T Consensus 12 ~~~~p~~~~~~~~l~a~~~f~~l~~~~dg~~d~I~~L~dal~~p~~lq~~~~~m~~dp~g~~~fkerp~~~~~dl~~L~q 91 (235)
T COG5031 12 PGHVPLSINNDQFLLAISAFLSLVAPEDGNFDPIFKLGDALDQPEFLQLAVDEMLSDPEGRQLFKERPTLGVLDLDQLAQ 91 (235)
T ss_pred CCCCcccccchHHHHHHHHHHHhhcCCCCCcchHHHHHHhhcCHHHHHHHHHHHhcChHHHHHHHhCCCCcccCHHHHHh
Confidence 68999999999999999999999999998 8999999998865 67999999999999999999999988999999999
Q ss_pred CCCCChHHHHHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccch--HH
Q 046453 81 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLP--MC 158 (225)
Q Consensus 81 lP~gSLG~~Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p--~~ 158 (225)
||+||||+.|+++|+++||+|+.+.++ ++|+|.+|+++|+|+||||||++||++||.+|||+++||+.+|++.| +.
T Consensus 92 LP~~TLGyvYad~mk~~~~~P~~~~~v--~vd~d~ayl~~r~retHDiyH~Vtg~dt~i~GEI~LqAfy~aql~~p~~~a 169 (235)
T COG5031 92 LPENTLGYVYADWMKREGFDPDTRKPV--PVDPDIAYLKMRWRETHDIYHAVTGFDTDIIGEIGLQAFYLAQLGLPRSVA 169 (235)
T ss_pred CCCcchhhhhHHHHHHhcCCCCCCCCC--CcCCHHHHHHHHHhhhhhHHHHHhCCCCCCcchhhhhhhhhhhcCccHHHH
Confidence 999999999999999999999999886 47999999999999999999999999999999999999999999999 66
Q ss_pred HHHHHhhccccCHHHHHHHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCCC
Q 046453 159 FLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA 222 (225)
Q Consensus 159 ~l~~~~g~~~~~~~~~~~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~~ 222 (225)
+++..+++++++..+....+..+++|||++|++|++|++++||+.||+||+|||++|||..++.
T Consensus 170 lla~~l~~~~Ly~~e~~~~~~~~I~~gw~mGl~aKpLi~~~We~~wekpl~evR~~Lnii~p~~ 233 (235)
T COG5031 170 LLAKNLLPLRLYQPELSRQLMDYIPRGWRMGLQAKPLIAQKWEELWEKPLEEVRTELNIILPPQ 233 (235)
T ss_pred HHHHhhhHHhhcCHHHhHHHHHHHHHHHHccccCcchHHHHHHHHhhCcHHHHHHHhcccCCCC
Confidence 6666677778777777776777899999999999999999999999999999999999776654
No 4
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=53.11 E-value=12 Score=38.58 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=35.5
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCC-CCcch------hHHHHHHHHh
Q 046453 85 TFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLP-TNLIG------ESALKVIEFQ 151 (225)
Q Consensus 85 SLG~~Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~-t~~~G------Ei~v~~F~~~ 151 (225)
-|||...+|=.+-|+.-+ | |.|| -||||.||+.--. -+-.- |+|++||.+-
T Consensus 947 DFGHiLGh~KsKlGi~RE-R--vPFv-------------LT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~l 1004 (1076)
T KOG0904|consen 947 DFGHILGHFKSKLGINRE-R--VPFV-------------LTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLAL 1004 (1076)
T ss_pred EhhhhhccchhhcCcccc-c--CceE-------------eecceeeeecccCCCCchhHHHHHHHHHHHHHHHH
Confidence 378888888777777653 3 4443 8999999995433 33333 7899999985
No 5
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=43.98 E-value=19 Score=25.71 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCCCcccchhhccCCCCChH
Q 046453 59 EGRAVLLERPRVIYEKVGHAWDLPPNTFG 87 (225)
Q Consensus 59 ~g~~ll~erp~~~~~~~d~l~~lP~gSLG 87 (225)
..+++|+|||.+.=..+. .||.||-|
T Consensus 44 ~I~~lL~e~P~~~GlavP---GMP~GSPG 69 (70)
T PF04214_consen 44 DIKRLLAEKPDARGLAVP---GMPAGSPG 69 (70)
T ss_pred HHHHHHhcCCCceEEeCC---CCCCCCCC
Confidence 457899999975544444 89999977
No 6
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=41.61 E-value=26 Score=31.48 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=37.5
Q ss_pred hhhccCCCCCcchhHHHHHHHHhcc--cchHHHHHH-----HhhccccCHHHHHHHHHhHHHHHHHhc
Q 046453 129 WHTLFGLPTNLIGESALKVIEFQQM--YLPMCFLSV-----IGGSARFSEKQRKLFFQHYFPWAIRAG 189 (225)
Q Consensus 129 ~HvLtG~~t~~~GEi~v~~F~~~q~--~~p~~~l~~-----~~g~~~~~~~~~~~l~~~~~~~a~~~G 189 (225)
.=+|.|+|-|..-|+++.+...+|. +.|....++ ..|+......+ +.++...+.||++.-
T Consensus 148 vG~LFGLGFDTATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L~DT~D-g~lM~~aY~wAf~~P 214 (280)
T TIGR00802 148 VGFLFGLGFDTATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMALFDTAD-SLFMVGAYGWAFSDP 214 (280)
T ss_pred HHHHHHcccchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHHhcCcc-HHHHHHHHHHHhcCc
Confidence 3468999999999999999988776 566654433 23443322211 234444456776643
No 7
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=36.31 E-value=34 Score=25.33 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=24.9
Q ss_pred hHHHHHHHHhCCHHHHHHHhcC-CCCCcccchh
Q 046453 46 AFESVLQRMKRSPEGRAVLLER-PRVIYEKVGH 77 (225)
Q Consensus 46 a~~~~~~~m~~~p~g~~ll~er-p~~~~~~~d~ 77 (225)
..+.+.+.+++||+.++.|++. |.++...++.
T Consensus 20 ~~~~l~~~vl~dp~V~~Fl~~h~~eLt~~~i~r 52 (94)
T PF07319_consen 20 RYEQLKQEVLSDPEVQAFLQEHQPELTQEMIER 52 (94)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHSTTT--HHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHhHHhcCHHHHHH
Confidence 3588899999999999999997 9998887774
No 8
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=33.64 E-value=12 Score=27.72 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=33.5
Q ss_pred CCchhhHHhhhccCchhHHHHHHHHhCCHHHHHHHhcCCCCCcccchhhccCCCCChHH
Q 046453 30 RRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGA 88 (225)
Q Consensus 30 ~~~d~v~~l~e~~~~~a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d~l~~lP~gSLG~ 88 (225)
++-|.|...++..+...+++|.+|+.+=. +.|. -...++.-....+.|||.
T Consensus 6 Ehy~kvv~yA~sI~D~tl~~ClerLk~We-------~n~~-~~ceIELY~DfApySFgF 56 (95)
T PF13496_consen 6 EHYDKVVQYAESIGDSTLQKCLERLKQWE-------KNPN-HPCEIELYYDFAPYSFGF 56 (95)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHH-------hCCC-CCeEEEEEeccCccccce
Confidence 55688889999999999999999997422 1111 122333334667777774
No 9
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=32.51 E-value=52 Score=30.07 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=29.9
Q ss_pred hccccchhhh-----ccCCCCCcchhHHHHHHHHh--cccchHHHHH
Q 046453 122 AREVHDFWHT-----LFGLPTNLIGESALKVIEFQ--QMYLPMCFLS 161 (225)
Q Consensus 122 ~r~~HDi~Hv-----LtG~~t~~~GEi~v~~F~~~--q~~~p~~~l~ 161 (225)
.|-+--=||+ |.|+|-|.+-|+++.+...+ +.+.|...+.
T Consensus 187 FrlvtksWhmypvGFLFGLGFDTATEiaLL~isa~~a~~gi~~~~il 233 (342)
T COG3376 187 FRLVTKSWHMYPVGFLFGLGFDTATEIALLAISAASAAIGIPIYAIL 233 (342)
T ss_pred HHHhcCcceEeehhhhhccccchHHHHHHHHHhhHhhhcCCChHHHH
Confidence 3444445775 78999999999999999994 4477766543
No 10
>COG2362 DppA D-aminopeptidase [Amino acid transport and metabolism]
Probab=28.36 E-value=38 Score=30.15 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=45.3
Q ss_pred hhhhccCC------CCCcchhHHHHHHHHhcccchHHHHHH---H----------------------hhccccCHHHHHH
Q 046453 128 FWHTLFGL------PTNLIGESALKVIEFQQMYLPMCFLSV---I----------------------GGSARFSEKQRKL 176 (225)
Q Consensus 128 i~HvLtG~------~t~~~GEi~v~~F~~~q~~~p~~~l~~---~----------------------~g~~~~~~~~~~~ 176 (225)
+.|+++|+ +-...||.++.++.++-.+.|...++. + .+..-+++++...
T Consensus 114 l~ht~~G~v~~v~Ing~e~gE~gLNa~laG~ygVPV~~~sGDd~~~~E~~~l~P~i~tv~~K~~~s~~a~isls~~~a~k 193 (274)
T COG2362 114 LAHTISGFVRRVRINGVEVGEYGLNAYLAGEYGVPVALVSGDDVAAREARELTPWIETVAVKEASSRSAAISLSPAKAEK 193 (274)
T ss_pred hhheeeceeEEEEECCEEhHHHHHHHHHhhccCCcEEEeeCcHHHhhhhhhhCCCeeEEEeccccCcccccCCCHHHHHH
Confidence 77999994 455789999999999999999764311 0 0111245555555
Q ss_pred HHHhHHHHHHHhcCCCCcc
Q 046453 177 FFQHYFPWAIRAGMRSTDL 195 (225)
Q Consensus 177 l~~~~~~~a~~~G~~a~~l 195 (225)
.++.-+..|.+++.+.+||
T Consensus 194 ~ir~~v~~Av~~~~~~~pl 212 (274)
T COG2362 194 AIREAVRAAVQRKLSLAPL 212 (274)
T ss_pred HHHHHHHHHHhhhcccCCC
Confidence 5565667777777666554
No 11
>PF06952 PsiA: PsiA protein; InterPro: IPR009713 This family consists of several Enterobacterial PsiA proteins. The function of PsiA is unknown although it is thought that it may affect the generation of an SOS signal in Escherichia coli [].
Probab=26.60 E-value=81 Score=27.67 Aligned_cols=27 Identities=30% Similarity=0.211 Sum_probs=21.4
Q ss_pred CCCCCc--ccCChHHHHHHHHHHHHHhhc
Q 046453 1 MIQGAR--VQLNGWQQVAVAVGSAVGALL 27 (225)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 27 (225)
|||.+| ||++|.|++.+.+-..+..-+
T Consensus 1 Mip~s~aLVp~~p~rqAa~~Aia~VE~~r 29 (238)
T PF06952_consen 1 MIPRSHALVPLNPERQAAMQAIAEVEERR 29 (238)
T ss_pred CCCcccccCcCCHHHHHHHHHHHHHHHHH
Confidence 899888 999999999877666665433
No 12
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=23.05 E-value=86 Score=24.63 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=25.9
Q ss_pred CCCchhhH--HhhhccCchhHHHHHHHHhCCHHHHHHHhc
Q 046453 29 PRRADLIA--ALGETTGRPAFESVLQRMKRSPEGRAVLLE 66 (225)
Q Consensus 29 p~~~d~v~--~l~e~~~~~a~~~~~~~m~~~p~g~~ll~e 66 (225)
|-|..... .=|+......+..-.+||++||.+++.+.+
T Consensus 18 ~PD~~L~~aA~~g~L~~~~~l~~q~~RML~dpr~~~~~~~ 57 (128)
T PF07631_consen 18 PPDAELLDAAAAGELRTPEQLRAQAERMLADPRARRFVER 57 (128)
T ss_pred CCCHHHHHHHHhCCCCCHHHHHHHHHHHHcCccHHHHHHH
Confidence 44444333 333445566789999999999999887764
No 13
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=22.54 E-value=53 Score=20.26 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=10.5
Q ss_pred CChHHHHHHHhhc
Q 046453 84 NTFGAAYASFMGS 96 (225)
Q Consensus 84 gSLG~~Y~~fl~~ 96 (225)
=|+|..|+.||-.
T Consensus 4 ~TVGK~YAt~lI~ 16 (35)
T PF08763_consen 4 VTVGKFYATLLIQ 16 (35)
T ss_dssp CCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 3889999999864
No 14
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=22.05 E-value=17 Score=31.69 Aligned_cols=18 Identities=39% Similarity=0.840 Sum_probs=14.7
Q ss_pred cccchhhhccCCCCCcch
Q 046453 124 EVHDFWHTLFGLPTNLIG 141 (225)
Q Consensus 124 ~~HDi~HvLtG~~t~~~G 141 (225)
|.|=+||++||+|.-...
T Consensus 214 e~H~~WHilt~ig~Y~~~ 231 (262)
T PF05875_consen 214 ELHAWWHILTGIGAYLLI 231 (262)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 899999999998765444
No 15
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=21.78 E-value=60 Score=26.40 Aligned_cols=18 Identities=11% Similarity=0.157 Sum_probs=15.8
Q ss_pred hHHHHHHHhhcCCCCCCC
Q 046453 86 FGAAYASFMGSRNFSPDD 103 (225)
Q Consensus 86 LG~~Y~~fl~~~g~~p~~ 103 (225)
|=|||++|+.+|+|+|.-
T Consensus 12 LlRA~yeWl~DN~~TPhl 29 (155)
T COG2969 12 LLRALYEWLLDNQLTPHL 29 (155)
T ss_pred HHHHHHHHHhcCCCCceE
Confidence 458999999999999973
No 16
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=20.97 E-value=73 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=19.8
Q ss_pred cCCCCChHHHHHHHh-hcCCCCCCC
Q 046453 80 DLPPNTFGAAYASFM-GSRNFSPDD 103 (225)
Q Consensus 80 ~lP~gSLG~~Y~~fl-~~~g~~p~~ 103 (225)
-+|+|.+||.|++.+ ...++..+.
T Consensus 112 l~PqG~l~R~~~~~~~~~~~~~~~~ 136 (442)
T PRK09775 112 MRPQGFLGRAWARRHAALLGLPEDI 136 (442)
T ss_pred cCCCchhhHHHHHHHHHhcCCCcch
Confidence 679999999999996 667777753
No 17
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.71 E-value=69 Score=25.76 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=15.6
Q ss_pred ChHHHHHHHhhcCCCCCC
Q 046453 85 TFGAAYASFMGSRNFSPD 102 (225)
Q Consensus 85 SLG~~Y~~fl~~~g~~p~ 102 (225)
-.|..+.++|+.||+.|+
T Consensus 66 v~G~kI~Rilk~~Gl~Pe 83 (151)
T KOG0400|consen 66 VTGNKILRILKSNGLAPE 83 (151)
T ss_pred echhHHHHHHHHcCCCCC
Confidence 468999999999999884
No 18
>PRK13704 plasmid SOS inhibition protein A; Provisional
Probab=20.56 E-value=1.1e+02 Score=26.89 Aligned_cols=26 Identities=31% Similarity=0.198 Sum_probs=20.9
Q ss_pred CCCCCc--ccCChHHHHHHHHHHHHHhh
Q 046453 1 MIQGAR--VQLNGWQQVAVAVGSAVGAL 26 (225)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~l 26 (225)
|||.+| ||+++.|++.+.+-+-+..-
T Consensus 1 Mi~~s~ALVpl~p~qQAAmqAIa~VE~r 28 (240)
T PRK13704 1 MSARSRALVPLSPEQQAAMQAIAEVEKR 28 (240)
T ss_pred CCccccccccCCHHHHHHHHHHHHHHHH
Confidence 788888 99999999987766666553
No 19
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.20 E-value=18 Score=37.05 Aligned_cols=55 Identities=27% Similarity=0.303 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHhhhc--cCchhHHHHHHHHhCCHHHHHHHhcCCC
Q 046453 13 QQVAVAVGSAVGALLDPRRADLIAALGET--TGRPAFESVLQRMKRSPEGRAVLLERPR 69 (225)
Q Consensus 13 ~~~~~~~~~~~~~l~dp~~~d~v~~l~e~--~~~~a~~~~~~~m~~~p~g~~ll~erp~ 69 (225)
-++.+.+|+......||...-. +.|.- -.|..--+.+..|+++|+.|+.|++|-.
T Consensus 500 AplVvl~GHGS~s~NNP~~aaL--DCGACgG~~G~~NARv~A~llNdp~VR~~L~~rGI 556 (788)
T PF10070_consen 500 APLVVLVGHGSSSTNNPHAAAL--DCGACGGQSGGPNARVLAALLNDPEVREGLAERGI 556 (788)
T ss_pred CCeEEEecCCCCCCCChhhhhc--ccccCCCCCCCccHHHHHHHhCCHHHHHHHHHcCC
Confidence 3334445555556666665321 12221 1233447889999999999999999964
Done!