Query 046453
Match_columns 225
No_of_seqs 150 out of 380
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 21:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3msq_A Putative ubiquinone bio 100.0 5.9E-65 2E-69 436.4 15.4 207 11-220 12-223 (224)
2 3kb4_A ALR8543 protein; alpha- 100.0 1.8E-61 6E-66 414.4 15.2 200 17-221 12-218 (225)
3 2k7r_A Primosomal protein DNAI 50.6 12 0.00042 27.1 3.2 31 47-77 21-52 (106)
4 3plv_C 66 kDa U4/U6.U5 small n 34.7 27 0.00091 18.3 2.0 14 209-222 8-21 (21)
5 2lna_A AFG3-like protein 2; st 23.4 41 0.0014 24.1 2.1 23 198-220 64-86 (99)
6 3dvk_B Voltage-dependent R-typ 16.0 66 0.0023 17.2 1.3 14 84-97 1-14 (23)
7 1mty_G Methane monooxygenase h 14.8 54 0.0018 25.8 1.1 25 195-219 136-160 (162)
8 1ou8_A Stringent starvation pr 13.9 67 0.0023 23.9 1.3 17 86-102 12-28 (111)
9 2lnm_A Protein TIC 40, chlorop 13.2 1.2E+02 0.0042 19.5 2.4 18 49-66 3-20 (62)
10 1yfn_A Stringent starvation pr 13.1 72 0.0025 23.9 1.3 17 86-102 13-29 (118)
No 1
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=100.00 E-value=5.9e-65 Score=436.38 Aligned_cols=207 Identities=20% Similarity=0.311 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCchhhHHhhhc-cCchhHHHHHHHHhCCHHHHHHHhcCCCCCcccchhhccCCCCChHHH
Q 046453 11 GWQQVAVAVGSAVGALLDPRRADLIAALGET-TGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAA 89 (225)
Q Consensus 11 ~~~~~~~~~~~~~~~l~dp~~~d~v~~l~e~-~~~~a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d~l~~lP~gSLG~~ 89 (225)
..=+.++++++++.+++||+|+|+||+++|+ +|++++++++++|++||+|++||+|||++++.+++.|++||+||||++
T Consensus 12 ~~~~~l~~l~~~~~ll~dp~~~d~V~~l~e~l~g~~~l~~~~~~m~~~p~gr~iL~erp~~~~~dl~~L~~lP~gTlG~~ 91 (224)
T 3msq_A 12 KGLLAYIQFLASSAQKIGDGNTDRVFDFEDALDQTQMAQLAVDELKKIPEVNALFSERWLPAPFNLDDLAKLPEGTLGHV 91 (224)
T ss_dssp HHHHHHHHHHHHTTC----CHHHHHHHHHHHTTTSHHHHHHHHHHTTSHHHHHHHHHTCCCCCCCHHHHHTSCTTBHHHH
T ss_pred HHHhHHHHHHHHHHHHcCCCchhHHHHHHHHcCChHHHHHHHHHHhcCHHHHHHHHhCCCCCCCCHHHHHcCCCCChHHH
Confidence 3445669999999999999999999999997 788999999999999999999999999988899999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHHHHHhhcc--
Q 046453 90 YASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSA-- 167 (225)
Q Consensus 90 Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l~~~~g~~-- 167 (225)
|++||+++||+||++++|++ ++|.+||++|||+||||+|||||||||++||++||||+++|+++|++++++++|.+
T Consensus 92 Y~~fl~~~g~spd~~~~v~~--~~d~ayv~~R~re~HD~~HvLtG~~t~~~GEi~v~~Fe~~q~~~P~~~l~~~~~~~~~ 169 (224)
T 3msq_A 92 YAREMKARGFDPYFYKKVPV--VDDISYLKMLWRSTHDIYHVVAGFDTNVFGEIGLQAFFLAQTPIPISVMLLSFGMVMI 169 (224)
T ss_dssp HHHHHHHC-----CCCCCCC--CSHHHHHHHHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccCCCCC--CcHHHHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 99999999999999999887 46899999999999999999999999999999999999999999999988766654
Q ss_pred -ccCHHHHHHHHHhHHHHHHHhcCCC-CcccCcchhhhhhccHHHHHHHcCCCCC
Q 046453 168 -RFSEKQRKLFFQHYFPWAIRAGMRS-TDLMCVYYEQHFHEDLEDLRKKWGIVPA 220 (225)
Q Consensus 168 -~~~~~~~~~l~~~~~~~a~~~G~~a-~~l~~~~wE~~~e~pL~e~R~~lgI~~~ 220 (225)
+++|+++..++.. ++||+++|++| ++|++++||++||+||+|||++|||+|.
T Consensus 170 ~~~~p~~~~~l~~~-i~~a~~~G~~a~~~L~~v~wE~~~e~pl~e~R~eLgI~p~ 223 (224)
T 3msq_A 170 SLYQPTNFKALMTE-ISRGYRVGSHTPGKLIAQKWDQLWDVQVSEIRERLGVNSI 223 (224)
T ss_dssp HHHCGGGHHHHHHH-HHHHHHHHHTCCSCSTTCCGGGSTTSBHHHHHHHHTSCC-
T ss_pred HhhCHHHHHHHHHH-HHHHHHHHHhCccchhcChHHHHhCCcHHHHHHHhCCCCC
Confidence 6788887777765 79999999999 9999999999999999999999999874
No 2
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=100.00 E-value=1.8e-61 Score=414.42 Aligned_cols=200 Identities=20% Similarity=0.317 Sum_probs=179.7
Q ss_pred HHHHHHHHhhcC-CCCchhhHHhhhccCch-hHHHHHHHHhCCHHHHHHHhcCCCCCcccchhhccCCCCChHHHHHHHh
Q 046453 17 VAVGSAVGALLD-PRRADLIAALGETTGRP-AFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFM 94 (225)
Q Consensus 17 ~~~~~~~~~l~d-p~~~d~v~~l~e~~~~~-a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d~l~~lP~gSLG~~Y~~fl 94 (225)
+++.+++++++| |+|+++||+++|+++++ ++++++++|++||+||+||+|||++++.+++.|++||+||||++|++||
T Consensus 12 ~a~~~~~~l~~~~p~d~~~V~~l~eal~~~~~l~~~~~~m~~~P~Gr~iL~eRp~~~~~dl~~L~~lP~gTlG~~Y~~fl 91 (225)
T 3kb4_A 12 AILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPMLGKIDLEQLHQLPNYTLGYMYADHM 91 (225)
T ss_dssp HHHHHHHHHHHSCSCCHHHHHHHHHHHSCHHHHHHHHHHHTTSHHHHHHHHHCCCCCSCCHHHHTTSCTTBHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHcCChHHHHHHHHHHhcCHHHHHHHHhCCCCCCCCHHHHHcCCCCChHHHHHHHH
Confidence 678999999999 99999999999998875 8999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHHHHHhhccccCHHHH
Q 046453 95 GSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQR 174 (225)
Q Consensus 95 ~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l~~~~g~~~~~~~~~ 174 (225)
+++||+||++++ ++++|.+||++|||+||||+|||||||||++||++||+|+++|++.|+++++++++. .+++..+
T Consensus 92 ~~~g~~pd~~~~---~~d~~~aYv~~R~re~HD~~HvltG~~~~~~GEi~v~~f~~~q~~~~~~~~~~~~~~-l~~~~~~ 167 (225)
T 3kb4_A 92 IRNQLTPPPVNE---NVNHPFMFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKN-LLKTAMY 167 (225)
T ss_dssp HHTTCCC--------CCCSHHHHHHHHHHHSHHHHHHHHTCCSSHHHHHHHHHHHHHHSTTCSHHHHHHHHH-HHHHHHH
T ss_pred HHcCCCCCcCCC---CCCcHHHHHHHHHhhhhhHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH-hhChHHh
Confidence 999999999877 368899999999999999999999999999999999999999999999988887776 4566555
Q ss_pred H-----HHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCC
Q 046453 175 K-----LFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221 (225)
Q Consensus 175 ~-----~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~ 221 (225)
. .++.. ++||+++|++|++|++++||++||+||+|||++|||++.-
T Consensus 168 ~~~~~~~~~~~-i~~~~~~G~~a~~L~~v~wEe~~e~pL~elR~eLgI~~~~ 218 (225)
T 3kb4_A 168 EVELCEQILDG-LTQGWMMGKRAKPLFGIEWNKLWETPLEELQTSLNIVPIL 218 (225)
T ss_dssp CGGGHHHHHHH-HHHHHHHHHHSCCCTTCCGGGCTTSBHHHHHHHTTCCC--
T ss_pred hhhhHHHHHHH-HHHHHHhhhcCchhhhchHHHHhcCCHHHHHHHhCChHHH
Confidence 4 44554 6899999999999999999999999999999999999753
No 3
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=50.62 E-value=12 Score=27.15 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCHHHHHHHhcCC-CCCcccchh
Q 046453 47 FESVLQRMKRSPEGRAVLLERP-RVIYEKVGH 77 (225)
Q Consensus 47 ~~~~~~~m~~~p~g~~ll~erp-~~~~~~~d~ 77 (225)
.+.+.+++++||+.++.|++.+ .++...++.
T Consensus 21 ~~~~~~~vl~dP~V~~Fl~~h~~~l~~~~I~~ 52 (106)
T 2k7r_A 21 LEQMKEKVMKDQDVQAFLKENEEVIDQKMIEK 52 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSTTTCCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHChhhCCHHHHHh
Confidence 4678999999999999999999 588877774
No 4
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=34.66 E-value=27 Score=18.32 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.3
Q ss_pred HHHHHHcCCCCCCC.....
Q 046453 209 EDLRKKWGIVPAPA..... 222 (225)
Q Consensus 209 ~e~R~~lgI~~~~~..... 222 (225)
..+|.++|+.|+|.
T Consensus 8 nk~r~~lGLkplp~..... 21 (21)
T 3plv_C 8 NELRASLGLKLIPPxxxxx 26 (26)
T ss_dssp HHHHHHTTCCCCCC.....
T ss_pred HHHHHHcCCCCCCC.....
Confidence 45899999998763
No 5
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=23.40 E-value=41 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.0
Q ss_pred cchhhhhhccHHHHHHHcCCCCC
Q 046453 198 VYYEQHFHEDLEDLRKKWGIVPA 220 (225)
Q Consensus 198 ~~wE~~~e~pL~e~R~~lgI~~~ 220 (225)
+-=-+-||+-|+++++++||.+.
T Consensus 64 IGSvd~FE~~Le~aQ~el~i~~~ 86 (99)
T 2lna_A 64 IGSVDTFERNLETLQQELGIEGE 86 (99)
T ss_dssp CSCHHHHHHHHHHHHHHTTCCTT
T ss_pred eCCHHHHHHHHHHHHHHcCCCcc
Confidence 33347899999999999999875
No 6
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=16.03 E-value=66 Score=17.18 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=10.2
Q ss_pred CChHHHHHHHhhcC
Q 046453 84 NTFGAAYASFMGSR 97 (225)
Q Consensus 84 gSLG~~Y~~fl~~~ 97 (225)
|-.|+.|+.+|-.+
T Consensus 1 ~~VGKiYA~llI~d 14 (23)
T 3dvk_B 1 GHMGKIYAAMMIMD 14 (26)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 55788888887643
No 7
>1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.23.3.1 PDB: 1mmo_G 1xmg_E 1xmf_E 1xmh_E 1xvb_E 1fyz_E 1fz0_E 1fz2_E 1fz3_E 1fz4_E 1fz5_E 1fz6_E 1fz7_E 1fz8_E 1fz9_E 1fzh_E 1fzi_E 1xu3_E 1xu5_E 1fz1_E ...
Probab=14.77 E-value=54 Score=25.76 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.8
Q ss_pred ccCcchhhhhhccHHHHHHHcCCCC
Q 046453 195 LMCVYYEQHFHEDLEDLRKKWGIVP 219 (225)
Q Consensus 195 l~~~~wE~~~e~pL~e~R~~lgI~~ 219 (225)
||-.+=-++...||+|+|++=|+..
T Consensus 136 LMelRn~dYy~~pLeeLRk~rGV~v 160 (162)
T 1mty_G 136 LMELRNLNYYDTPLEELRKQRGVRV 160 (162)
T ss_dssp HHHHHTTTTTCSCHHHHHHHHTCEE
T ss_pred HHHhcCcchhcCcHHHHHHhcCCcc
Confidence 4444444678999999999999864
No 8
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=13.91 E-value=67 Score=23.86 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=15.0
Q ss_pred hHHHHHHHhhcCCCCCC
Q 046453 86 FGAAYASFMGSRNFSPD 102 (225)
Q Consensus 86 LG~~Y~~fl~~~g~~p~ 102 (225)
|=|++++|+-+||++|.
T Consensus 12 LiRA~yeWi~DN~~TP~ 28 (111)
T 1ou8_A 12 LLRAYYDWLVDNSFTPY 28 (111)
T ss_dssp HHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhCCCcce
Confidence 34899999999999996
No 9
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=13.20 E-value=1.2e+02 Score=19.49 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=12.0
Q ss_pred HHHHHHhCCHHHHHHHhc
Q 046453 49 SVLQRMKRSPEGRAVLLE 66 (225)
Q Consensus 49 ~~~~~m~~~p~g~~ll~e 66 (225)
.+.+++++||+.+.++++
T Consensus 3 e~~~kl~~dPe~~~~m~d 20 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQN 20 (62)
T ss_dssp HHHHHHTTSHHHHHHTTS
T ss_pred HHHHHHHcChHHHHHcCC
Confidence 456677777777776654
No 10
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=13.09 E-value=72 Score=23.93 Aligned_cols=17 Identities=12% Similarity=0.344 Sum_probs=15.0
Q ss_pred hHHHHHHHhhcCCCCCC
Q 046453 86 FGAAYASFMGSRNFSPD 102 (225)
Q Consensus 86 LG~~Y~~fl~~~g~~p~ 102 (225)
|=||+++|+-+||++|.
T Consensus 13 LiRA~yeWi~DN~~TP~ 29 (118)
T 1yfn_A 13 LLRAFYEWLLDNQLTPH 29 (118)
T ss_dssp HHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHcCCCcce
Confidence 44899999999999996
Done!