Query 046456
Match_columns 138
No_of_seqs 114 out of 799
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 99.9 1.2E-25 2.5E-30 178.4 13.0 106 27-136 1-110 (236)
2 PF00139 Lectin_legB: Legume l 99.9 6E-25 1.3E-29 173.8 10.3 106 26-136 1-111 (236)
3 cd01951 lectin_L-type legume l 99.6 7.3E-15 1.6E-19 114.7 9.9 82 39-131 13-99 (223)
4 cd07308 lectin_leg-like legume 99.2 9.5E-11 2.1E-15 91.5 8.6 66 39-114 19-86 (218)
5 cd06901 lectin_VIP36_VIPL VIP3 99.0 1.1E-09 2.3E-14 88.2 8.9 66 40-114 20-87 (248)
6 PF03388 Lectin_leg-like: Legu 97.6 0.00047 1E-08 54.6 8.4 66 40-114 22-89 (229)
7 cd06902 lectin_ERGIC-53_ERGL E 97.5 0.00098 2.1E-08 52.9 9.0 65 40-114 22-88 (225)
8 cd06900 lectin_VcfQ VcfQ bacte 97.4 0.00058 1.3E-08 55.2 7.5 55 51-112 30-85 (255)
9 cd06903 lectin_EMP46_EMP47 EMP 97.2 0.0024 5.2E-08 50.5 8.5 66 40-114 21-87 (215)
10 KOG3839 Lectin VIP36, involved 89.5 1.2 2.5E-05 37.8 6.1 65 41-114 73-139 (351)
11 KOG3838 Mannose lectin ERGIC-5 70.9 15 0.00032 32.2 6.2 58 46-113 61-119 (497)
12 KOG2919 Guanine nucleotide-bin 24.6 47 0.001 28.5 1.7 13 70-82 132-144 (406)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=99.93 E-value=1.2e-25 Score=178.38 Aligned_cols=106 Identities=43% Similarity=0.704 Sum_probs=93.7
Q ss_pred eeEEeCCCCCCCCCCeEEE-eeeeCCCCeEEcCC-C--CCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCC
Q 046456 27 LSFNYSSFSPLSDDNITYQ-RAYPDSNRMIQLPP-N--PETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTIC 102 (138)
Q Consensus 27 ~sF~f~~F~~~~~~~l~l~-~A~~~~~g~L~LT~-s--~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~ 102 (138)
++|+|++|... .+++.++ +|.+..++.|+||+ . .+++|||+|++||++|++.+++++||+|+|+|.|.+.+...+
T Consensus 1 ~~f~f~~f~~~-~~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~~~~ 79 (236)
T cd06899 1 LSFNFNGFSSD-QSNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNPSLG 79 (236)
T ss_pred CceecCCCCCC-CCCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCCCCC
Confidence 47999999864 5789999 99994489999999 7 899999999999999999999999999999999999876779
Q ss_pred CCccEEEeccCCCCCCCCCCCCCCeeeeecCCCC
Q 046456 103 ADGLAFFLAPQGAPATANDDKGGGSLGLTKDIEP 136 (138)
Q Consensus 103 gdGlAF~l~p~~~~~p~~~~s~g~~LGL~n~~~~ 136 (138)
||||||+|+|.... +.+ ..|+|||+++.+++
T Consensus 80 gdGlAF~i~~~~~~-~~~--~~G~~lG~~~~~~~ 110 (236)
T cd06899 80 GDGLAFFLAPTDSL-PPA--SSGGYLGLFNSSNN 110 (236)
T ss_pred CCeEEEEEecCCCC-CCC--CCcceeeeecCCCC
Confidence 99999999998755 445 88999999987653
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=99.92 E-value=6e-25 Score=173.76 Aligned_cols=106 Identities=42% Similarity=0.675 Sum_probs=92.1
Q ss_pred eeeEEeCCCCCCCCCCeEEE-eeeeCCCCeEEcCC-CC-CCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeC--CCC
Q 046456 26 ALSFNYSSFSPLSDDNITYQ-RAYPDSNRMIQLPP-NP-ETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQ--KRT 100 (138)
Q Consensus 26 ~~sF~f~~F~~~~~~~l~l~-~A~~~~~g~L~LT~-s~-~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~--~~~ 100 (138)
+++|+|+.|.. +.++.++ +|.+..+|.|+||+ .. +++|||+|++||+|||+.+++++||+|+|+|.|... ...
T Consensus 1 ~~~F~~~~F~~--~~~~~l~G~A~~~~~~~l~LT~~~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~~~~ 78 (236)
T PF00139_consen 1 SVSFSFPSFSN--SSNLTLNGDASISSNGSLQLTPDSTNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPGSSN 78 (236)
T ss_dssp EEEEEESSBTT--GTTEEEEETEEEETTSEEESSTBETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSSSSS
T ss_pred CceEEcCCCCC--CCceEEEeeEEeccCCeEEcCCCCCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCCCCc
Confidence 47899999943 5899999 99986789999999 66 999999999999999999999999999999999654 466
Q ss_pred CCCCccEEEeccCCCCCCCCCCCCCCeeeeecCCCC
Q 046456 101 ICADGLAFFLAPQGAPATANDDKGGGSLGLTKDIEP 136 (138)
Q Consensus 101 ~~gdGlAF~l~p~~~~~p~~~~s~g~~LGL~n~~~~ 136 (138)
.+||||||+|.|.. .++.+ +.|++||+.+.++.
T Consensus 79 ~~~dGlAFvi~~~~-~~~~~--~~g~~lG~~~~~~~ 111 (236)
T PF00139_consen 79 NGGDGLAFVIQPDP-NLPGG--SSGGYLGLFNSSTD 111 (236)
T ss_dssp S-BEEEEEEEEETT-SSTTT--SSGGGTTTSSSSST
T ss_pred cCCCceEEEEecCc-ccccC--CCCCccCccccccC
Confidence 79999999999988 55666 89999999986543
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=99.59 E-value=7.3e-15 Score=114.73 Aligned_cols=82 Identities=35% Similarity=0.559 Sum_probs=68.6
Q ss_pred CCCeEEE-eeeeCC-CCeEEcCC-CCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccCCC
Q 046456 39 DDNITYQ-RAYPDS-NRMIQLPP-NPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQGA 115 (138)
Q Consensus 39 ~~~l~l~-~A~~~~-~g~L~LT~-s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~~~ 115 (138)
..++.++ +|.+.. ++.|+||+ ..+++|||+|++||++| ++|+|+|+|.|.... ..+||||||+|+|...
T Consensus 13 ~~~~~~~G~A~~~~~~~~l~Lt~~~~~~~G~~~~~~~i~~~-------~~F~~~F~f~i~~~~-~~~gdG~aF~l~~~~~ 84 (223)
T cd01951 13 QSNWQLNGSATLTTDSGVLRLTPDTGNQAGSAWYKTPIDLS-------KDFTTTFKFYLGTKG-TNGADGIAFVLQNDPA 84 (223)
T ss_pred hhhcEEcccEEecCCCCEEEECCCCCCcEEEEEECCcEecc-------CCEEEEEEEEEeCCC-CCCCCcEEEEEecCCC
Confidence 4689999 999943 89999999 78999999999999998 589999999999865 4689999999999774
Q ss_pred CCCCCCCCCC--Ceeeee
Q 046456 116 PATANDDKGG--GSLGLT 131 (138)
Q Consensus 116 ~~p~~~~s~g--~~LGL~ 131 (138)
. +.+ ..| ++||.-
T Consensus 85 ~-~~~--~~g~~~~lG~~ 99 (223)
T cd01951 85 G-ALG--GGGGGGGLGYG 99 (223)
T ss_pred C-ccc--cCCCCCccCcc
Confidence 4 333 444 788853
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.19 E-value=9.5e-11 Score=91.52 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=58.3
Q ss_pred CCCeEEE-eeeeCCCCeEEcCC-CCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccCC
Q 046456 39 DDNITYQ-RAYPDSNRMIQLPP-NPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQG 114 (138)
Q Consensus 39 ~~~l~l~-~A~~~~~g~L~LT~-s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~~ 114 (138)
..++.+. +|.+ .++.|+||+ ..++.|+++|+.|+++ .+|+++|+|.|.... ..+||||||+++|..
T Consensus 19 ~~~w~~~G~a~~-~~~~i~LT~~~~~~~G~~~~~~pi~~--------~~F~~~f~F~i~~~~-~~~gdG~af~~~~~~ 86 (218)
T cd07308 19 IGNWTVGGSTVI-TKNYIRLTPDVPSQSGSLWSRVPIPA--------KDFEIEVEFSIHGGS-GLGGDGFAFWYTEEP 86 (218)
T ss_pred cCCeEEcCCeEE-eCCEEEeCCCCCCCEeEEEeCCCccC--------CCEEEEEEEEEeCCC-CCCCCEEEEEEECCC
Confidence 3579999 9998 699999999 7889999999999997 489999999998763 468999999999954
No 5
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.04 E-value=1.1e-09 Score=88.17 Aligned_cols=66 Identities=18% Similarity=0.375 Sum_probs=58.4
Q ss_pred CCeEEE-eeeeCCCCeEEcCC-CCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccCC
Q 046456 40 DNITYQ-RAYPDSNRMIQLPP-NPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQG 114 (138)
Q Consensus 40 ~~l~l~-~A~~~~~g~L~LT~-s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~~ 114 (138)
.++.+. +|.+ .++.|+||+ ..++.||++|+.|+++ .+|+++|+|.|.+.....+||||||.++...
T Consensus 20 ~~w~~~G~a~v-~~~~IrLTp~~~~~~G~~w~~~p~~~--------~~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~ 87 (248)
T cd06901 20 PLWDFLGSTMV-TSQYIRLTPDHQSKQGSIWNRVPCYL--------RDWEMHVHFKVHGSGKNLFGDGFAIWYTKER 87 (248)
T ss_pred CCEEEcceEEE-cCCeEEECCCCCCCEEEEeccCCccC--------CCEEEEEEEEEeCCCCCCCCCEEEEEEEcCC
Confidence 579999 9998 678999999 6778999999999987 4799999999998766678999999999864
No 6
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=97.57 E-value=0.00047 Score=54.65 Aligned_cols=66 Identities=23% Similarity=0.466 Sum_probs=51.5
Q ss_pred CCeEEE-eeeeCCCCeEEcCC-CCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccCC
Q 046456 40 DNITYQ-RAYPDSNRMIQLPP-NPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQG 114 (138)
Q Consensus 40 ~~l~l~-~A~~~~~g~L~LT~-s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~~ 114 (138)
.+..+. +|.+ .++.|+||+ .+++.|.++-+.|++. -.|+..++|.|........||||||-++...
T Consensus 22 ~~W~~~G~t~i-~~~~IrLTp~~~~~~G~iws~~~~~~--------~~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~ 89 (229)
T PF03388_consen 22 PNWDIGGSTVI-TDNFIRLTPDRQSQSGSIWSRKPIPF--------DNWEIEFTFRISGQEKGLGGDGMAFWYTKDP 89 (229)
T ss_dssp TTEEEEET-EE-ESSEEEEE-SSTTEEEEEEESS-BEE--------SEEEEEEEEEEESS-SSS-S-EEEEEEESSS
T ss_pred CCEEECCeEEe-cCCEEEECCCcccCEEEEEEcCCCCc--------cCEEEEEEEEEeccccCcCCCeEEEEEEcCc
Confidence 357777 8877 689999999 7999999999999986 2799999999998755668999999998754
No 7
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=97.47 E-value=0.00098 Score=52.95 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=54.2
Q ss_pred CCeEEE-eeeeCCCCeEEcCC-CCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccCC
Q 046456 40 DNITYQ-RAYPDSNRMIQLPP-NPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQG 114 (138)
Q Consensus 40 ~~l~l~-~A~~~~~g~L~LT~-s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~~ 114 (138)
.+..+. +|.+ .++.|+||+ .+++.|.++-+.|++. -+|+..|.|.|.... ..+||||||.++...
T Consensus 22 ~~W~~~G~t~~-~~~~IrLTp~~~~~~G~iw~~~~~~~--------~~w~ie~~Fri~g~~-~~~gdG~a~W~t~~~ 88 (225)
T cd06902 22 PFWSHGGDAIA-SLEQVRLTPSLRSKKGSVWTKNPFSF--------ENWEVEVTFRVTGRG-RIGADGLAIWYTKER 88 (225)
T ss_pred CceEecccEEe-cCCEEEECCCCCCCEEEEeeCCCcCC--------CCEEEEEEEEEecCC-CCCCCEEEEEEECCC
Confidence 567788 8887 788999999 7899999999999972 269999999998653 357899999998754
No 8
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=97.45 E-value=0.00058 Score=55.18 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=41.9
Q ss_pred CCCeEEcCC-CCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEecc
Q 046456 51 SNRMIQLPP-NPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAP 112 (138)
Q Consensus 51 ~~g~L~LT~-s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p 112 (138)
.+|+||||+ ..+++|-+.|.++++--+ . -...+|.+-.-.. ...++|||||||+-
T Consensus 30 ~~g~LRLT~~~~nqata~~~~~~FPs~~--n----~v~veFd~yayg~-~g~GADGia~vLsD 85 (255)
T cd06900 30 VNNRLRLTDASGNQATAVTLQRLFPSAG--N----YVEVEFDYYAYGS-GGNGADGVALVLSD 85 (255)
T ss_pred ccCeEEeccCccCcceeEEEeeeeccCC--C----eEEEEEEEEEecC-CCCCCceEEEEEeC
Confidence 479999999 899999999999887432 1 2556666655554 46689999999974
No 9
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=97.23 E-value=0.0024 Score=50.48 Aligned_cols=66 Identities=24% Similarity=0.377 Sum_probs=54.6
Q ss_pred CCeEEE-eeeeCCCCeEEcCCCCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccCC
Q 046456 40 DNITYQ-RAYPDSNRMIQLPPNPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQG 114 (138)
Q Consensus 40 ~~l~l~-~A~~~~~g~L~LT~s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~~ 114 (138)
.+..+. +|.+ .++.|+||+.+++.|.++=+.|+++.+ +|+..++|.|.... ..+||||||-++...
T Consensus 21 ~~W~~~G~t~v-~~~~IrLTp~~s~~G~iWs~~pl~~~~-------~w~ie~~Fri~G~~-~~~gdGla~W~t~~~ 87 (215)
T cd06903 21 PNWQTSGNPKL-ESGRIILTPPGNQRGSLWLKKPLSLKD-------EWTIEWTFRSTGPE-GRSGGGLNFWLVKDG 87 (215)
T ss_pred CCeEEcCcEEe-eCCeEEECCCCCceEeEeeCCcCCCCC-------CEEEEEEEEecccC-CcCCCEEEEEEECCC
Confidence 567788 8888 688999998667789999999998653 69999999997653 268999999998754
No 10
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=1.2 Score=37.83 Aligned_cols=65 Identities=18% Similarity=0.392 Sum_probs=53.9
Q ss_pred CeEEE-eeeeCCCCeEEcCC-CCCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccCC
Q 046456 41 NITYQ-RAYPDSNRMIQLPP-NPETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQG 114 (138)
Q Consensus 41 ~l~l~-~A~~~~~g~L~LT~-s~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~~ 114 (138)
+..+. ...+ ...-+|||. .+++.|.++=.+||-.. +|+-.+.|.|....+..-|||||+..+-..
T Consensus 73 ~W~~~Gstvv-~~~~irLT~d~qsk~GAv~n~~Pv~s~--------~wev~v~fkv~~~s~~lfgdG~Aiw~t~Er 139 (351)
T KOG3839|consen 73 NWNLSGSTVV-TSNYIRLTPDEQSKSGAVWNRQPVFSR--------DWEVLVHFKVHGQSKNLFGDGMAIWYTKER 139 (351)
T ss_pred CccccccEEE-EeeeeeccccccccccccccCCCcccc--------ceeEEEEEEEecCCCcccccceEEEeeccc
Confidence 44455 6666 577899999 89999999999999733 599999999999888889999999997654
No 11
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.89 E-value=15 Score=32.22 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=40.7
Q ss_pred eeeeCCCCeEEcCCC-CCCeEEEEecCCEeecCCCCCceeeeEEEEEEEEeeCCCCCCCCccEEEeccC
Q 046456 46 RAYPDSNRMIQLPPN-PETAGRATYNKPMHLWDKTTRNLADFTTHFSFVIDSQKRTICADGLAFFLAPQ 113 (138)
Q Consensus 46 ~A~~~~~g~L~LT~s-~~s~Gra~Y~~Pv~lwd~~t~~~aSFsT~FsF~I~~~~~~~~gdGlAF~l~p~ 113 (138)
||-. +...+||+++ .+..|.||=+..+.+ --|...-+|.|+.. ...++||||+--+..
T Consensus 61 dAIa-s~eqvRlaPSmrsrkGavWtka~~~f--------e~weVev~~rVtGr-GRiGAdGlaiWYt~~ 119 (497)
T KOG3838|consen 61 DAIA-SSEQVRLAPSMRSRKGAVWTKASVPF--------ENWEVEVQFRVTGR-GRIGADGLAIWYTRG 119 (497)
T ss_pred cccc-cccceeeccccccccCceeecccCCc--------ccceEEEEEEeccc-ccccCCceEEEEecC
Confidence 5533 5678999993 666787776655543 23566788898886 346899999987654
No 12
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=24.62 E-value=47 Score=28.54 Aligned_cols=13 Identities=46% Similarity=1.086 Sum_probs=11.1
Q ss_pred cCCEeecCCCCCc
Q 046456 70 NKPMHLWDKTTRN 82 (138)
Q Consensus 70 ~~Pv~lwd~~t~~ 82 (138)
.+||++||.-||+
T Consensus 132 ~~PIh~wdaftG~ 144 (406)
T KOG2919|consen 132 DQPIHLWDAFTGK 144 (406)
T ss_pred cCceeeeeccccc
Confidence 5899999988875
Done!