Query 046457
Match_columns 59
No_of_seqs 110 out of 206
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 12:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02633 palmitoyl protein thi 99.8 1.2E-19 2.7E-24 131.7 5.1 57 1-59 4-60 (314)
2 PLN02606 palmitoyl-protein thi 99.6 3.5E-16 7.6E-21 113.4 5.4 44 16-59 17-61 (306)
3 PF02089 Palm_thioest: Palmito 99.6 2.7E-16 5.9E-21 112.5 3.1 38 22-59 3-42 (279)
4 KOG2541 Palmitoyl protein thio 99.6 1.5E-15 3.2E-20 110.1 5.4 52 8-59 5-58 (296)
5 PF12695 Abhydrolase_5: Alpha/ 84.8 1.6 3.4E-05 25.5 3.2 25 26-52 1-25 (145)
6 PF02230 Abhydrolase_2: Phosph 83.4 0.95 2.1E-05 29.6 2.0 23 23-47 12-35 (216)
7 TIGR02240 PHA_depoly_arom poly 82.0 1.4 3.1E-05 29.1 2.5 27 23-51 24-50 (276)
8 PRK11460 putative hydrolase; P 81.0 2.6 5.7E-05 28.2 3.5 25 26-52 18-42 (232)
9 PF10503 Esterase_phd: Esteras 79.9 3 6.5E-05 28.8 3.6 30 23-52 168-198 (220)
10 KOG1454 Predicted hydrolase/ac 77.4 1.2 2.7E-05 32.0 1.1 16 23-38 57-72 (326)
11 PF12146 Hydrolase_4: Putative 77.4 2 4.2E-05 25.0 1.8 23 27-51 19-41 (79)
12 PRK10974 glycerol-3-phosphate 77.0 4 8.7E-05 29.2 3.6 53 3-57 5-58 (438)
13 PF07519 Tannase: Tannase and 76.9 3 6.5E-05 31.7 3.1 27 26-52 355-383 (474)
14 cd04759 Rib_hydrolase ADP-ribo 74.9 4.2 9E-05 29.3 3.3 30 24-53 183-216 (242)
15 PF12697 Abhydrolase_6: Alpha/ 73.3 4.8 0.0001 23.9 2.8 22 27-50 1-22 (228)
16 PRK10985 putative hydrolase; P 71.1 6 0.00013 27.4 3.3 27 25-51 59-85 (324)
17 PRK10349 carboxylesterase BioH 70.6 5.3 0.00012 25.9 2.8 28 23-52 12-39 (256)
18 TIGR01840 esterase_phb esteras 70.1 7.7 0.00017 25.1 3.4 32 23-54 166-199 (212)
19 KOG2112 Lysophospholipase [Lip 70.1 5.9 0.00013 27.9 3.1 16 25-40 4-19 (206)
20 PRK11071 esterase YqiA; Provis 69.5 7.7 0.00017 25.3 3.4 26 26-51 3-28 (190)
21 PF00326 Peptidase_S9: Prolyl 66.7 9.6 0.00021 24.3 3.3 29 23-51 143-172 (213)
22 PF02267 Rib_hydrolayse: ADP-r 66.1 9.7 0.00021 27.3 3.5 28 25-52 185-216 (243)
23 PF01674 Lipase_2: Lipase (cla 65.4 3.9 8.5E-05 28.3 1.4 27 24-51 1-27 (219)
24 PLN02824 hydrolase, alpha/beta 64.8 8.2 0.00018 25.7 2.8 25 25-51 30-54 (294)
25 PLN02385 hydrolase; alpha/beta 64.4 9 0.00019 26.6 3.0 26 25-51 88-113 (349)
26 PLN02211 methyl indole-3-aceta 63.7 11 0.00025 25.5 3.4 28 22-51 16-43 (273)
27 PRK11126 2-succinyl-6-hydroxy- 63.4 4.5 9.8E-05 25.7 1.3 22 26-49 4-25 (242)
28 TIGR03695 menH_SHCHC 2-succiny 62.7 9.8 0.00021 22.9 2.7 25 25-51 2-26 (251)
29 PRK10673 acyl-CoA esterase; Pr 62.6 6.1 0.00013 25.2 1.8 27 23-51 15-41 (255)
30 COG3571 Predicted hydrolase of 55.8 21 0.00046 25.3 3.7 32 20-51 10-41 (213)
31 PF04083 Abhydro_lipase: Parti 55.7 7.6 0.00017 22.1 1.3 15 24-38 43-57 (63)
32 PF13823 ADH_N_assoc: Alcohol 54.1 6.3 0.00014 18.9 0.6 8 28-35 4-11 (23)
33 KOG4409 Predicted hydrolase/ac 52.5 8.6 0.00019 29.3 1.4 14 22-35 88-101 (365)
34 cd03412 CbiK_N Anaerobic cobal 52.5 15 0.00033 22.9 2.4 31 27-57 4-35 (127)
35 PF05057 DUF676: Putative seri 51.3 19 0.0004 24.1 2.8 24 26-51 6-29 (217)
36 PHA02857 monoglyceride lipase; 49.2 25 0.00055 23.0 3.1 28 22-49 207-235 (276)
37 KOG1455 Lysophospholipase [Lip 48.7 20 0.00044 26.8 2.8 24 22-45 244-268 (313)
38 PLN02679 hydrolase, alpha/beta 48.0 14 0.0003 26.2 1.8 25 25-51 89-113 (360)
39 PRK10749 lysophospholipase L2; 47.6 24 0.00052 24.4 3.0 29 22-50 257-286 (330)
40 PRK03592 haloalkane dehalogena 47.0 12 0.00026 24.9 1.3 26 24-51 27-52 (295)
41 TIGR01738 bioH putative pimelo 47.0 23 0.00049 21.5 2.5 29 22-50 186-215 (245)
42 COG2267 PldB Lysophospholipase 46.7 18 0.0004 25.5 2.3 24 25-53 35-58 (298)
43 PLN03084 alpha/beta hydrolase 46.7 21 0.00046 26.2 2.7 26 24-51 127-152 (383)
44 PRK06489 hypothetical protein; 46.5 12 0.00026 26.3 1.3 14 25-38 70-83 (360)
45 COG1638 DctP TRAP-type C4-dica 45.7 50 0.0011 24.1 4.4 35 20-54 21-59 (332)
46 PRK10566 esterase; Provisional 45.3 41 0.0009 21.6 3.6 28 24-51 186-214 (249)
47 PRK03204 haloalkane dehalogena 44.4 24 0.00053 23.8 2.5 25 25-51 35-59 (286)
48 PLN02298 hydrolase, alpha/beta 44.2 36 0.00077 23.2 3.3 27 23-49 250-277 (330)
49 KOG1455 Lysophospholipase [Lip 43.3 26 0.00057 26.2 2.7 29 27-56 57-86 (313)
50 PF13709 DUF4159: Domain of un 40.6 47 0.001 22.6 3.4 27 25-51 54-81 (207)
51 TIGR02821 fghA_ester_D S-formy 40.0 32 0.0007 23.3 2.6 28 23-50 40-69 (275)
52 PF11165 DUF2949: Protein of u 39.7 5.6 0.00012 22.9 -1.0 14 20-33 29-43 (58)
53 PF10000 ACT_3: ACT domain; I 39.0 14 0.00031 21.6 0.6 20 40-59 2-26 (72)
54 PF14336 DUF4392: Domain of un 38.7 16 0.00035 26.2 1.0 23 30-53 178-201 (291)
55 TIGR01249 pro_imino_pep_1 prol 38.6 38 0.00082 23.0 2.8 27 24-50 248-275 (306)
56 cd03416 CbiX_SirB_N Sirohydroc 37.7 38 0.00082 19.6 2.3 27 27-53 3-29 (101)
57 TIGR03056 bchO_mg_che_rel puta 36.2 44 0.00096 21.2 2.6 28 23-50 219-247 (278)
58 PF06441 EHN: Epoxide hydrolas 36.0 21 0.00045 22.4 1.1 16 20-35 88-103 (112)
59 PRK14875 acetoin dehydrogenase 35.9 25 0.00053 23.9 1.5 26 24-51 131-156 (371)
60 cd00707 Pancreat_lipase_like P 35.9 71 0.0015 22.1 3.8 23 25-47 37-59 (275)
61 TIGR03101 hydr2_PEP hydrolase, 35.4 50 0.0011 23.2 3.0 25 26-50 27-53 (266)
62 COG1075 LipA Predicted acetylt 35.3 38 0.00083 24.3 2.5 22 24-45 59-81 (336)
63 TIGR03230 lipo_lipase lipoprot 35.0 52 0.0011 25.2 3.3 26 23-48 40-66 (442)
64 PF04155 Ground-like: Ground-l 34.1 35 0.00075 19.5 1.8 14 34-47 3-16 (76)
65 PF03295 Pox_TAA1: Poxvirus tr 33.1 41 0.00088 19.9 1.9 28 25-59 18-46 (63)
66 PF11997 DUF3492: Domain of un 31.8 33 0.00071 24.2 1.7 22 12-33 184-206 (268)
67 cd08594 PI-PLCc_eta Catalytic 31.8 1.1E+02 0.0024 21.7 4.3 36 17-54 81-116 (227)
68 PRK13604 luxD acyl transferase 31.7 61 0.0013 23.7 3.1 27 24-50 202-229 (307)
69 TIGR01250 pro_imino_pep_2 prol 31.7 59 0.0013 20.2 2.6 28 23-50 230-257 (288)
70 PF05728 UPF0227: Uncharacteri 31.7 95 0.0021 20.7 3.8 27 27-53 2-28 (187)
71 PF00561 Abhydrolase_1: alpha/ 31.6 45 0.00099 20.3 2.1 30 22-51 173-203 (230)
72 TIGR01607 PST-A Plasmodium sub 31.4 56 0.0012 23.0 2.7 25 24-48 270-295 (332)
73 COG1506 DAP2 Dipeptidyl aminop 31.1 89 0.0019 24.2 4.0 28 21-48 548-577 (620)
74 PRK09474 malE maltose ABC tran 30.2 1.7E+02 0.0037 20.3 5.0 35 21-57 27-61 (396)
75 TIGR03611 RutD pyrimidine util 30.2 64 0.0014 19.8 2.6 27 23-49 197-224 (257)
76 PF06377 Adipokin_hormo: Adipo 30.0 55 0.0012 18.3 2.0 20 33-52 18-39 (48)
77 PRK05855 short chain dehydroge 29.6 31 0.00067 24.9 1.2 26 24-51 25-50 (582)
78 TIGR03343 biphenyl_bphD 2-hydr 29.5 59 0.0013 21.0 2.5 27 23-49 222-249 (282)
79 COG0400 Predicted esterase [Ge 29.3 1.1E+02 0.0024 20.9 3.9 32 21-52 143-175 (207)
80 PRK10778 dksA RNA polymerase-b 29.2 42 0.00091 22.2 1.7 17 43-59 97-114 (151)
81 PF01713 Smr: Smr domain; Int 29.2 66 0.0014 18.1 2.4 30 21-53 24-53 (83)
82 TIGR03299 LGT_TIGR03299 phage/ 28.9 21 0.00046 26.3 0.3 18 30-47 11-29 (309)
83 PRK00923 sirohydrochlorin coba 28.5 67 0.0014 19.4 2.5 27 27-53 5-31 (126)
84 PLN02652 hydrolase; alpha/beta 27.1 72 0.0016 23.4 2.8 26 24-49 324-350 (395)
85 TIGR02420 dksA RNA polymerase- 27.0 49 0.0011 20.2 1.7 16 44-59 67-83 (110)
86 PRK05634 nucleosidase; Provisi 26.9 64 0.0014 21.4 2.3 35 17-51 138-172 (185)
87 TIGR02427 protocat_pcaD 3-oxoa 26.8 80 0.0017 19.0 2.6 28 23-50 192-220 (251)
88 PF07819 PGAP1: PGAP1-like pro 26.1 60 0.0013 22.0 2.1 23 22-44 2-25 (225)
89 COG1448 TyrB Aspartate/tyrosin 26.1 46 0.00099 25.7 1.6 23 17-42 164-187 (396)
90 TIGR01392 homoserO_Ac_trn homo 25.9 1E+02 0.0022 21.4 3.3 28 24-51 288-316 (351)
91 PF01918 Alba: Alba; InterPro 25.8 38 0.00082 18.7 0.9 32 20-53 25-56 (70)
92 PRK06026 5'-methylthioadenosin 25.6 78 0.0017 22.0 2.6 34 18-51 155-189 (212)
93 PF00151 Lipase: Lipase; Inte 25.3 92 0.002 22.6 3.0 26 24-49 70-97 (331)
94 PLN02894 hydrolase, alpha/beta 24.9 42 0.00092 24.4 1.3 12 25-36 106-117 (402)
95 PLN02578 hydrolase 24.3 86 0.0019 22.0 2.7 29 23-51 295-324 (354)
96 cd00286 Tubulin_FtsZ Tubulin/F 23.8 1.1E+02 0.0025 21.5 3.2 27 27-53 92-118 (328)
97 PF06028 DUF915: Alpha/beta hy 23.8 62 0.0014 22.8 1.9 27 22-50 9-35 (255)
98 PLN02511 hydrolase 23.7 1.2E+02 0.0025 22.0 3.3 21 26-46 102-122 (388)
99 PF15001 AP-5_subunit_s1: AP-5 23.6 50 0.0011 22.9 1.3 12 27-38 105-116 (189)
100 PF03583 LIP: Secretory lipase 23.4 57 0.0012 22.9 1.7 27 24-52 219-245 (290)
101 PF08874 DUF1835: Domain of un 23.4 72 0.0016 19.2 1.9 35 22-57 84-119 (124)
102 cd08633 PI-PLCc_eta2 Catalytic 23.2 1.8E+02 0.004 21.0 4.2 35 17-53 81-115 (254)
103 COG5157 CDC73 RNA polymerase I 23.1 59 0.0013 24.8 1.7 28 25-57 205-233 (362)
104 PLN02442 S-formylglutathione h 23.1 1.4E+02 0.0029 20.5 3.4 29 23-51 216-246 (283)
105 cd03414 CbiX_SirB_C Sirohydroc 22.9 95 0.0021 18.3 2.4 27 27-53 4-30 (117)
106 cd03064 TRX_Fd_NuoE TRX-like [ 22.3 87 0.0019 17.5 2.0 25 25-51 55-79 (80)
107 PF10216 ChpXY: CO2 hydration 22.3 50 0.0011 25.2 1.2 14 27-40 87-102 (353)
108 PF01738 DLH: Dienelactone hyd 22.3 1.3E+02 0.0028 19.2 3.0 31 22-52 143-174 (218)
109 PF00091 Tubulin: Tubulin/FtsZ 22.0 77 0.0017 21.1 2.0 31 27-58 127-159 (216)
110 PF07521 RMMBL: RNA-metabolisi 21.9 54 0.0012 17.0 1.0 15 18-32 26-40 (43)
111 PF14492 EFG_II: Elongation Fa 21.8 88 0.0019 17.8 2.0 27 27-57 45-71 (75)
112 PRK11143 glpQ glycerophosphodi 21.7 3.1E+02 0.0067 20.1 5.2 34 18-51 19-53 (355)
113 cd00247 Endostatin-like Endost 21.7 40 0.00087 23.4 0.6 12 28-39 112-130 (171)
114 TIGR01705 MTA/SAH-nuc-hyp 5'-m 21.5 1.1E+02 0.0024 21.3 2.7 33 18-50 155-188 (212)
115 cd06059 Tubulin The tubulin su 20.9 1.3E+02 0.0029 21.9 3.2 27 27-53 92-118 (382)
116 PLN02965 Probable pheophorbida 20.4 1.2E+02 0.0027 19.7 2.7 28 23-50 192-220 (255)
117 TIGR02890 spore_yteA sporulati 20.2 78 0.0017 21.0 1.7 18 42-59 71-89 (159)
118 cd02186 alpha_tubulin The tubu 20.2 1.5E+02 0.0033 22.3 3.4 27 27-53 134-160 (434)
No 1
>PLN02633 palmitoyl protein thioesterase family protein
Probab=99.78 E-value=1.2e-19 Score=131.72 Aligned_cols=57 Identities=46% Similarity=0.743 Sum_probs=47.0
Q ss_pred CCcccchHHHHHHHHHHHcccccCcceeEeeCCCCCCCChhHHHHHHHHhhccCCceeC
Q 046457 1 MAFRSVPISFITVLLLFFFPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKGYC 59 (59)
Q Consensus 1 ~~~~~~~~~~v~~~~~~~~~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~G~yv~c 59 (59)
|++|+.-+++ ..++.+++++.++|+|+||||||+|||+||++|+++++++.|+|++|
T Consensus 4 ~~~~~~~~~~--~~~~~~~~~~~~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~ 60 (314)
T PLN02633 4 GLKRSCVMVV--VAFLAMVHVSVSVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFC 60 (314)
T ss_pred cccchhhhHH--HHHHHhccccCCCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEE
Confidence 3555333333 33458899999999999999999999999999999998877999997
No 2
>PLN02606 palmitoyl-protein thioesterase
Probab=99.63 E-value=3.5e-16 Score=113.37 Aligned_cols=44 Identities=48% Similarity=0.946 Sum_probs=38.5
Q ss_pred HHH-cccccCcceeEeeCCCCCCCChhHHHHHHHHhhccCCceeC
Q 046457 16 LFF-FPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKGYC 59 (59)
Q Consensus 16 ~~~-~~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~G~yv~c 59 (59)
+.+ ++.++++|+|+||||||+|+|+||++++++|+++.|+|++|
T Consensus 17 ~~~~~~~~~~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~ 61 (306)
T PLN02606 17 FFFSIPVSLSVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTC 61 (306)
T ss_pred HHhccccCCCCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEE
Confidence 344 66678999999999999999999999999997766888876
No 3
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=99.61 E-value=2.7e-16 Score=112.52 Aligned_cols=38 Identities=24% Similarity=0.546 Sum_probs=26.5
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHHHHHHHhhcc-CCceeC
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQFTENLSSFS-GSKGYC 59 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~~~~ll~~~~-G~yv~c 59 (59)
++++|+||||||||+|||+ ||+.++++|++.+ |+||||
T Consensus 3 ~~~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~s 42 (279)
T PF02089_consen 3 PSPLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHS 42 (279)
T ss_dssp TSS--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE
T ss_pred CCCCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEE
Confidence 6789999999999999998 9999999999999 999996
No 4
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=110.08 Aligned_cols=52 Identities=38% Similarity=0.680 Sum_probs=43.8
Q ss_pred HHHHHH-HHHHHcccccC-cceeEeeCCCCCCCChhHHHHHHHHhhccCCceeC
Q 046457 8 ISFITV-LLLFFFPVSRS-IPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKGYC 59 (59)
Q Consensus 8 ~~~v~~-~~~~~~~~~~~-~PvViwHGlGDsC~n~gm~~~~~ll~~~~G~yv~c 59 (59)
+++++. .++++++.+.+ +|+|+||||||+|+|-+|++++|+++|+.|+||+|
T Consensus 5 ~~~~l~~~~~~~~~~s~s~~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~ 58 (296)
T KOG2541|consen 5 ALVVLLLPFLALIHVSPSPVPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYC 58 (296)
T ss_pred hhHHHHHHHHHhcccCcccCCEEEEeccCcccccchHHHHHHHHHhCCCCeeEE
Confidence 334333 34677777777 99999999999999999999999999966999998
No 5
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=84.79 E-value=1.6 Score=25.51 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=19.6
Q ss_pred ceeEeeCCCCCCCChhHHHHHHHHhhc
Q 046457 26 PFIVLHGIGDQCSNQGVKQFTENLSSF 52 (59)
Q Consensus 26 PvViwHGlGDsC~n~gm~~~~~ll~~~ 52 (59)
|+|+.||.|.+ ...+..+.+.+.+.
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~ 25 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQ 25 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHT
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHC
Confidence 78999999985 44677888777765
No 6
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=83.38 E-value=0.95 Score=29.57 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=11.4
Q ss_pred cCcc-eeEeeCCCCCCCChhHHHHHH
Q 046457 23 RSIP-FIVLHGIGDQCSNQGVKQFTE 47 (59)
Q Consensus 23 ~~~P-vViwHGlGDsC~n~gm~~~~~ 47 (59)
...| +|+.||.||+. ..+....+
T Consensus 12 ~~~~lvi~LHG~G~~~--~~~~~~~~ 35 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSE--DLFALLAE 35 (216)
T ss_dssp T-SEEEEEE--TTS-H--HHHHHHHH
T ss_pred CCceEEEEECCCCCCc--chhHHHHh
Confidence 3345 45669999997 45555444
No 7
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=82.03 E-value=1.4 Score=29.12 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=17.1
Q ss_pred cCcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 23 RSIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
...|+|++||+|++.. -...+.+.+.+
T Consensus 24 ~~~plvllHG~~~~~~--~w~~~~~~L~~ 50 (276)
T TIGR02240 24 GLTPLLIFNGIGANLE--LVFPFIEALDP 50 (276)
T ss_pred CCCcEEEEeCCCcchH--HHHHHHHHhcc
Confidence 3479999999998754 22344444443
No 8
>PRK11460 putative hydrolase; Provisional
Probab=81.04 E-value=2.6 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=18.4
Q ss_pred ceeEeeCCCCCCCChhHHHHHHHHhhc
Q 046457 26 PFIVLHGIGDQCSNQGVKQFTENLSSF 52 (59)
Q Consensus 26 PvViwHGlGDsC~n~gm~~~~~ll~~~ 52 (59)
.+|+.||.|++- ..+..+.+.+.+.
T Consensus 18 ~vIlLHG~G~~~--~~~~~l~~~l~~~ 42 (232)
T PRK11460 18 LLLLFHGVGDNP--VAMGEIGSWFAPA 42 (232)
T ss_pred EEEEEeCCCCCh--HHHHHHHHHHHHH
Confidence 488899999983 3577777777653
No 9
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=79.91 E-value=3 Score=28.81 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=21.2
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHHhhc
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENLSSF 52 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll~~~ 52 (59)
...|.++|||-.|.=.++ -..++.+...+.
T Consensus 168 ~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 168 PGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred CCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 347999999999997777 455555544443
No 10
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=77.40 E-value=1.2 Score=31.95 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=13.6
Q ss_pred cCcceeEeeCCCCCCC
Q 046457 23 RSIPFIVLHGIGDQCS 38 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~ 38 (59)
...|+|+.||.||++.
T Consensus 57 ~~~pvlllHGF~~~~~ 72 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSF 72 (326)
T ss_pred CCCcEEEeccccCCcc
Confidence 5689999999999654
No 11
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=77.36 E-value=2 Score=25.04 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=13.8
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
+++.||+|+.+. -..++.+.+.+
T Consensus 19 v~i~HG~~eh~~--ry~~~a~~L~~ 41 (79)
T PF12146_consen 19 VVIVHGFGEHSG--RYAHLAEFLAE 41 (79)
T ss_pred EEEeCCcHHHHH--HHHHHHHHHHh
Confidence 678899987643 24444444433
No 12
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=77.04 E-value=4 Score=29.19 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=33.4
Q ss_pred cccchHHHHHHHHHHHcccccCcceeEeeCCCCCCCChhHHHHHHHHhhcc-CCce
Q 046457 3 FRSVPISFITVLLLFFFPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFS-GSKG 57 (59)
Q Consensus 3 ~~~~~~~~v~~~~~~~~~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~-G~yv 57 (59)
.|+.++-.++++ .........+-+.+||+.++. ...-+.++.+..++.+ |+-|
T Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~i~~W~~~~~~-~~~~~~~~~~~F~~~~p~i~V 58 (438)
T PRK10974 5 LRSTALGLALGL-ALSGNAQAVTEIPFWHSMEGE-LGKEVDSLAQRFNASQPDYKI 58 (438)
T ss_pred HHHHHHHHHHHH-hcccccccCceEEEecCCCCh-hHHHHHHHHHHHHHhCCCeEE
Confidence 577777777776 344455556799999987643 1124556666666655 6543
No 13
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=76.87 E-value=3 Score=31.66 Aligned_cols=27 Identities=15% Similarity=0.333 Sum_probs=20.7
Q ss_pred ceeEeeCCCCCCCCh--hHHHHHHHHhhc
Q 046457 26 PFIVLHGIGDQCSNQ--GVKQFTENLSSF 52 (59)
Q Consensus 26 PvViwHGlGDsC~n~--gm~~~~~ll~~~ 52 (59)
-+++|||+-|..-+| ++.-.++..+..
T Consensus 355 KLI~~HG~aD~~I~p~~ti~YY~~V~~~~ 383 (474)
T PF07519_consen 355 KLILYHGWADPLIPPQGTIDYYERVVARM 383 (474)
T ss_pred eEEEEecCCCCccCCCcHHHHHHHHHHhc
Confidence 389999999999988 666666665554
No 14
>cd04759 Rib_hydrolase ADP-ribosyl cyclase (also known as cyclic ADP-ribose hydrolase or CD38) synthesizes the second messenger cyclic-ADP ribose (cADPR), which in turn releases calcium from internal stores. Mammals possess two membrane proteins, CD38 and BST-1/CD157, which exhibit ADP-ribosyl cyclase function, as well as intracellular soluble ADP-ribose cyclases. CD38 is involved in differentiation, adhesion, and cell proliferation, as well as diseases such as AIDS, diabetes, and B-cell chronic lymphocytic leukemia. The extramembrane domain of CD38 acts as a multifunctional enzyme and can synthesize cADPR from NAD+, hydrolyze NAD+, and cADPR to ADPR, as well as catalyze the exchange of the nicotinamide group of NADP+ with nicotinic acid under acidic conditions to yield NAADP+ (nicotinic acid-adenine dinucleotide phosphate), a metabolite involved in Ca2+ mobilization from acidic stores.
Probab=74.95 E-value=4.2 Score=29.29 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=25.4
Q ss_pred CcceeEeeCCC----CCCCChhHHHHHHHHhhcc
Q 046457 24 SIPFIVLHGIG----DQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 24 ~~PvViwHGlG----DsC~n~gm~~~~~ll~~~~ 53 (59)
.+-+.+.|++| |+|.+.++..+++.|++..
T Consensus 183 ~v~i~vvh~l~~~~~~sC~~~Si~~L~~~l~~~n 216 (242)
T cd04759 183 QVIIWVIHDLEGPNRDSCGSGSIKELESILKKRN 216 (242)
T ss_pred eEEEEEEcCCCCCcccccccchHHHHHHHHHHcC
Confidence 36688999976 8999999999999999653
No 15
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=73.34 E-value=4.8 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=11.6
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHh
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLS 50 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~ 50 (59)
+|+.||+|.+. .....+.+.++
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l~ 22 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEALA 22 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHHH
T ss_pred eEEECCCCCCH--HHHHHHHHHHh
Confidence 56777777664 23444444444
No 16
>PRK10985 putative hydrolase; Provisional
Probab=71.14 E-value=6 Score=27.43 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=18.6
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
-++|++||++.+..+.-+..+.+.+.+
T Consensus 59 p~vll~HG~~g~~~~~~~~~~~~~l~~ 85 (324)
T PRK10985 59 PRLVLFHGLEGSFNSPYAHGLLEAAQK 85 (324)
T ss_pred CEEEEeCCCCCCCcCHHHHHHHHHHHH
Confidence 358899999877555556666665554
No 17
>PRK10349 carboxylesterase BioH; Provisional
Probab=70.57 E-value=5.3 Score=25.87 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=17.8
Q ss_pred cCcceeEeeCCCCCCCChhHHHHHHHHhhc
Q 046457 23 RSIPFIVLHGIGDQCSNQGVKQFTENLSSF 52 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~gm~~~~~ll~~~ 52 (59)
.+.|+|+.||.|.+.. ....+.+.+++.
T Consensus 12 g~~~ivllHG~~~~~~--~w~~~~~~L~~~ 39 (256)
T PRK10349 12 GNVHLVLLHGWGLNAE--VWRCIDEELSSH 39 (256)
T ss_pred CCCeEEEECCCCCChh--HHHHHHHHHhcC
Confidence 3457999999985543 344555555543
No 18
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=70.12 E-value=7.7 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=23.9
Q ss_pred cCcc-eeEeeCCCCCCCCh-hHHHHHHHHhhccC
Q 046457 23 RSIP-FIVLHGIGDQCSNQ-GVKQFTENLSSFSG 54 (59)
Q Consensus 23 ~~~P-vViwHGlGDsC~n~-gm~~~~~ll~~~~G 54 (59)
.+.| +.+|||.-|.=..+ ...++.+.+++.+|
T Consensus 166 ~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~~~ 199 (212)
T TIGR01840 166 GPTPIMSVVHGDADYTVLPGNADEIRDAMLKVYG 199 (212)
T ss_pred CCCCeEEEEEcCCCceeCcchHHHHHHHHHHhcC
Confidence 3466 45999999997766 77777777777653
No 19
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=70.12 E-value=5.9 Score=27.87 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=12.0
Q ss_pred cceeEeeCCCCCCCCh
Q 046457 25 IPFIVLHGIGDQCSNQ 40 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~ 40 (59)
.-+|..||+||+=.+.
T Consensus 4 atIi~LHglGDsg~~~ 19 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSGW 19 (206)
T ss_pred EEEEEEecCCCCCccH
Confidence 3478889999995543
No 20
>PRK11071 esterase YqiA; Provisional
Probab=69.46 E-value=7.7 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=17.9
Q ss_pred ceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 26 PFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 26 PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
|+|+.||.|-+-.+.....+++.+++
T Consensus 3 ~illlHGf~ss~~~~~~~~~~~~l~~ 28 (190)
T PRK11071 3 TLLYLHGFNSSPRSAKATLLKNWLAQ 28 (190)
T ss_pred eEEEECCCCCCcchHHHHHHHHHHHH
Confidence 79999999876555444456666654
No 21
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=66.67 E-value=9.6 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHHhh
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENLSS 51 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll~~ 51 (59)
...|+.++||-.|.=+.+ ...++.+.|++
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~ 172 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRK 172 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHh
Confidence 579999999999987755 44444444443
No 22
>PF02267 Rib_hydrolayse: ADP-ribosyl cyclase; InterPro: IPR003193 CD38, the HUGO gene name, is also called T10 or ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase (3.2.2.5 from EC). CD38 is a novel enzyme capable of catalysing multiple reactions, including NAD glycohydrolase, ADP-ribosyl cyclase, cyclic ADP ribose hydrolase and base-exchange activities. Two of the enzymatic products, cyclic ADP-ribose (cADPR) and nicotinic acid adenine dinucleotide phosphate (NAADP), are calcium messengers in a wide variety of cells from protist, plant, and mammal to human. CD38 is a positive and negative regulator of cell activation and proliferation, depending on the cellular environment. It is involved in adhesion between human lymphocytes and endothelial cells and is involved in the metabolism of two calcium messengers, cADPR and NAADP. CD157 (also called BP-3/IF-7, BST-1 or Mo5) has ADP-ribosyl cyclase and cyclic ADP-ribose hydrolase activities. CD157 supports the growth of a pre-B cell line, DW34. Anti-CD157 mAb IF-7 has synergistic effects on anti-CD3-induced growth of T progenitor cells, and facilitates the development of [alpha][beta] TCR+ cells in foetal thymic organ culture system. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0003953 NAD+ nucleosidase activity; PDB: 2EG9_B 1YH3_A 3DZF_C 2HCT_A 2O3R_A 3DZI_A 1ZVM_D 3I9M_B 2I66_B 2O3T_B ....
Probab=66.06 E-value=9.7 Score=27.35 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=23.7
Q ss_pred cceeEeeCCC----CCCCChhHHHHHHHHhhc
Q 046457 25 IPFIVLHGIG----DQCSNQGVKQFTENLSSF 52 (59)
Q Consensus 25 ~PvViwHGlG----DsC~n~gm~~~~~ll~~~ 52 (59)
+-+.+.|.+| |+|.+.+|..+++.|++.
T Consensus 185 l~i~vvh~~~~~~~esC~~gSi~~L~~~l~~~ 216 (243)
T PF02267_consen 185 LEIWVVHDIEGPSRESCGSGSIKELESILKSR 216 (243)
T ss_dssp EEEEEEESSSSSSSSGTTSHHHHHHHHHHHHT
T ss_pred EEEEEEecCCCCccCCCccHHHHHHHHHHHHc
Confidence 5578889664 899999999999999985
No 23
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=65.39 E-value=3.9 Score=28.27 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=12.9
Q ss_pred CcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 24 SIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
..|||+.||.+++-.. ....+.+.+++
T Consensus 1 ~~PVVlVHG~~~~~~~-~w~~~~~~l~~ 27 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAYS-NWSTLAPYLKA 27 (219)
T ss_dssp S--EEEE--TTTTTCG-GCCHHHHHHHH
T ss_pred CCCEEEECCCCcchhh-CHHHHHHHHHH
Confidence 3799999999985332 23344444443
No 24
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=64.79 E-value=8.2 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=17.3
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
-|+|+.||.|.+.. ....+.+.+.+
T Consensus 30 ~~vlllHG~~~~~~--~w~~~~~~L~~ 54 (294)
T PLN02824 30 PALVLVHGFGGNAD--HWRKNTPVLAK 54 (294)
T ss_pred CeEEEECCCCCChh--HHHHHHHHHHh
Confidence 58999999998754 45555555554
No 25
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=64.39 E-value=9 Score=26.63 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=17.0
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
-++|+.||+|+++.. ....+.+.+.+
T Consensus 88 ~~iv~lHG~~~~~~~-~~~~~~~~l~~ 113 (349)
T PLN02385 88 AAVCFCHGYGDTCTF-FFEGIARKIAS 113 (349)
T ss_pred eEEEEECCCCCccch-HHHHHHHHHHh
Confidence 458899999987642 34455555543
No 26
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=63.65 E-value=11 Score=25.52 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=19.1
Q ss_pred ccCcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 22 SRSIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
....|+|+.||.|.+.. ....+.+.+++
T Consensus 16 ~~~p~vvliHG~~~~~~--~w~~~~~~L~~ 43 (273)
T PLN02211 16 RQPPHFVLIHGISGGSW--CWYKIRCLMEN 43 (273)
T ss_pred CCCCeEEEECCCCCCcC--cHHHHHHHHHh
Confidence 34457999999987532 45666766654
No 27
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=63.37 E-value=4.5 Score=25.66 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=13.8
Q ss_pred ceeEeeCCCCCCCChhHHHHHHHH
Q 046457 26 PFIVLHGIGDQCSNQGVKQFTENL 49 (59)
Q Consensus 26 PvViwHGlGDsC~n~gm~~~~~ll 49 (59)
|+|++||+|.+- .....+.+.+
T Consensus 4 ~vvllHG~~~~~--~~w~~~~~~l 25 (242)
T PRK11126 4 WLVFLHGLLGSG--QDWQPVGEAL 25 (242)
T ss_pred EEEEECCCCCCh--HHHHHHHHHc
Confidence 699999998752 2334444444
No 28
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=62.69 E-value=9.8 Score=22.94 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=15.3
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
-|+|+.||.|.+.. ....+.+.+.+
T Consensus 2 ~~vv~~hG~~~~~~--~~~~~~~~L~~ 26 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQALIELLGP 26 (251)
T ss_pred CEEEEEcCCCCchh--hHHHHHHHhcc
Confidence 36888899875422 45555555543
No 29
>PRK10673 acyl-CoA esterase; Provisional
Probab=62.57 E-value=6.1 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=17.6
Q ss_pred cCcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 23 RSIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
...|+|+.||.+++.. ....+.+.+.+
T Consensus 15 ~~~~iv~lhG~~~~~~--~~~~~~~~l~~ 41 (255)
T PRK10673 15 NNSPIVLVHGLFGSLD--NLGVLARDLVN 41 (255)
T ss_pred CCCCEEEECCCCCchh--HHHHHHHHHhh
Confidence 4478999999887643 34445555544
No 30
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=55.76 E-value=21 Score=25.35 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=26.4
Q ss_pred ccccCcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 20 PVSRSIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 20 ~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
+-..+.-+++-||-|-+=.+++|.++.+.+..
T Consensus 10 ag~~~~tilLaHGAGasmdSt~m~~~a~~la~ 41 (213)
T COG3571 10 AGPAPVTILLAHGAGASMDSTSMTAVAAALAR 41 (213)
T ss_pred CCCCCEEEEEecCCCCCCCCHHHHHHHHHHHh
Confidence 34455778899999999999999999888764
No 31
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=55.74 E-value=7.6 Score=22.12 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=6.7
Q ss_pred CcceeEeeCCCCCCC
Q 046457 24 SIPFIVLHGIGDQCS 38 (59)
Q Consensus 24 ~~PvViwHGlGDsC~ 38 (59)
..|+++-|||.++..
T Consensus 43 k~pVll~HGL~~ss~ 57 (63)
T PF04083_consen 43 KPPVLLQHGLLQSSD 57 (63)
T ss_dssp --EEEEE--TT--GG
T ss_pred CCcEEEECCcccChH
Confidence 356778899988754
No 32
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=54.13 E-value=6.3 Score=18.92 Aligned_cols=8 Identities=50% Similarity=0.837 Sum_probs=6.7
Q ss_pred eEeeCCCC
Q 046457 28 IVLHGIGD 35 (59)
Q Consensus 28 ViwHGlGD 35 (59)
|.|||-+|
T Consensus 4 v~y~G~~~ 11 (23)
T PF13823_consen 4 VVYHGPKD 11 (23)
T ss_dssp EEEEETTE
T ss_pred eEEeCCCc
Confidence 68999886
No 33
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=52.54 E-value=8.6 Score=29.28 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=11.8
Q ss_pred ccCcceeEeeCCCC
Q 046457 22 SRSIPFIVLHGIGD 35 (59)
Q Consensus 22 ~~~~PvViwHGlGD 35 (59)
+..+|+|+.||.|-
T Consensus 88 ~~~~plVliHGyGA 101 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGA 101 (365)
T ss_pred cCCCcEEEEeccch
Confidence 45699999999984
No 34
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=52.46 E-value=15 Score=22.91 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=24.7
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc-CCce
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS-GSKG 57 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~-G~yv 57 (59)
+++.||--|...+..+.++.+.+++.+ +..|
T Consensus 4 llv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V 35 (127)
T cd03412 4 LLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEV 35 (127)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeE
Confidence 567899999866779999999998876 4443
No 35
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=51.27 E-value=19 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=18.7
Q ss_pred ceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 26 PFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 26 PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
=+|+.||++.+ ...|..+++.+++
T Consensus 6 LvV~vHGL~G~--~~d~~~~~~~l~~ 29 (217)
T PF05057_consen 6 LVVFVHGLWGN--PADMRYLKNHLEK 29 (217)
T ss_pred EEEEeCCCCCC--HHHHHHHHHHHHH
Confidence 47899999877 3378888887777
No 36
>PHA02857 monoglyceride lipase; Provisional
Probab=49.22 E-value=25 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=22.6
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHHHHHHH
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQFTENL 49 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~~~~ll 49 (59)
....|+.++||-.|.-+.+ ...++.+.+
T Consensus 207 ~i~~Pvliv~G~~D~i~~~~~~~~l~~~~ 235 (276)
T PHA02857 207 KIKTPILILQGTNNEISDVSGAYYFMQHA 235 (276)
T ss_pred cCCCCEEEEecCCCCcCChHHHHHHHHHc
Confidence 3459999999999999987 666766665
No 37
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=48.73 E-value=20 Score=26.79 Aligned_cols=24 Identities=29% Similarity=0.718 Sum_probs=19.1
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHHH
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQF 45 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~~ 45 (59)
...+|+++.||-.|.=+.| +-+.+
T Consensus 244 ~vtvPflilHG~dD~VTDp~~Sk~L 268 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTDPKVSKEL 268 (313)
T ss_pred cccccEEEEecCCCcccCcHHHHHH
Confidence 4569999999999999988 44433
No 38
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=48.01 E-value=14 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=15.8
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
.|+|+.||.|.+.. ....+.+.+.+
T Consensus 89 p~lvllHG~~~~~~--~w~~~~~~L~~ 113 (360)
T PLN02679 89 PPVLLVHGFGASIP--HWRRNIGVLAK 113 (360)
T ss_pred CeEEEECCCCCCHH--HHHHHHHHHhc
Confidence 68999999996532 33444444444
No 39
>PRK10749 lysophospholipase L2; Provisional
Probab=47.59 E-value=24 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=23.3
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
..+.|+.+.||-.|...++ +..++.+.++
T Consensus 257 ~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~ 286 (330)
T PRK10749 257 DITTPLLLLQAEEERVVDNRMHDRFCEART 286 (330)
T ss_pred CCCCCEEEEEeCCCeeeCHHHHHHHHHHHh
Confidence 4569999999999999988 6566776664
No 40
>PRK03592 haloalkane dehalogenase; Provisional
Probab=47.04 E-value=12 Score=24.88 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=16.1
Q ss_pred CcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 24 SIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
..|+|+.||.+.+.. ....+.+.+.+
T Consensus 27 g~~vvllHG~~~~~~--~w~~~~~~L~~ 52 (295)
T PRK03592 27 GDPIVFLHGNPTSSY--LWRNIIPHLAG 52 (295)
T ss_pred CCEEEEECCCCCCHH--HHHHHHHHHhh
Confidence 359999999985543 23344444443
No 41
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=47.04 E-value=23 Score=21.50 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=21.2
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
....|+.++||-.|....+ ....+.+.+.
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~ 215 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPYLDKLAP 215 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHHHHHhCC
Confidence 3458999999999998876 5555555543
No 42
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=46.73 E-value=18 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=16.5
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
--+|+.||+||. +++-.++++...
T Consensus 35 g~Vvl~HG~~Eh-----~~ry~~la~~l~ 58 (298)
T COG2267 35 GVVVLVHGLGEH-----SGRYEELADDLA 58 (298)
T ss_pred cEEEEecCchHH-----HHHHHHHHHHHH
Confidence 448899999985 555555555554
No 43
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=46.73 E-value=21 Score=26.19 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=17.5
Q ss_pred CcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 24 SIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
..|+|+.||+|.+. .....+.+.+.+
T Consensus 127 ~~~ivllHG~~~~~--~~w~~~~~~L~~ 152 (383)
T PLN03084 127 NPPVLLIHGFPSQA--YSYRKVLPVLSK 152 (383)
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHHhc
Confidence 35899999998642 245566666655
No 44
>PRK06489 hypothetical protein; Provisional
Probab=46.45 E-value=12 Score=26.28 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.2
Q ss_pred cceeEeeCCCCCCC
Q 046457 25 IPFIVLHGIGDQCS 38 (59)
Q Consensus 25 ~PvViwHGlGDsC~ 38 (59)
.|+|+.||.|.+..
T Consensus 70 pplvllHG~~~~~~ 83 (360)
T PRK06489 70 NAVLVLHGTGGSGK 83 (360)
T ss_pred CeEEEeCCCCCchh
Confidence 48999999987643
No 45
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=45.73 E-value=50 Score=24.09 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=24.2
Q ss_pred ccccCcceeEeeCCCCCCCCh---hHHHHHHHHhhcc-C
Q 046457 20 PVSRSIPFIVLHGIGDQCSNQ---GVKQFTENLSSFS-G 54 (59)
Q Consensus 20 ~~~~~~PvViwHGlGDsC~n~---gm~~~~~ll~~~~-G 54 (59)
..+...++++.++.+.+=.+| ++..|.+++++.+ |
T Consensus 21 ~~a~~~~~~l~~~~~~~~~~p~~~~~~~fa~~v~ekt~G 59 (332)
T COG1638 21 AAAAAGALVLRFSHVTPEGHPKGKAAKKFAELVEEKTGG 59 (332)
T ss_pred HHHhhhceEEeecccCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 344445677777766532333 9999999999988 5
No 46
>PRK10566 esterase; Provisional
Probab=45.32 E-value=41 Score=21.58 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=22.5
Q ss_pred CcceeEeeCCCCCCCCh-hHHHHHHHHhh
Q 046457 24 SIPFIVLHGIGDQCSNQ-GVKQFTENLSS 51 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~-gm~~~~~ll~~ 51 (59)
+.|+.+.||--|+-..+ ...++.+.+++
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~ 214 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRE 214 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 68999999999998887 66666666654
No 47
>PRK03204 haloalkane dehalogenase; Provisional
Probab=44.40 E-value=24 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=15.9
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
.|+|+.||.+++ +..-..+.+.+.+
T Consensus 35 ~~iv~lHG~~~~--~~~~~~~~~~l~~ 59 (286)
T PRK03204 35 PPILLCHGNPTW--SFLYRDIIVALRD 59 (286)
T ss_pred CEEEEECCCCcc--HHHHHHHHHHHhC
Confidence 589999999842 2244455555554
No 48
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=44.18 E-value=36 Score=23.20 Aligned_cols=27 Identities=41% Similarity=0.615 Sum_probs=20.9
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHH
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENL 49 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll 49 (59)
-.+|+.+.||-.|.-..+ ...++.+.+
T Consensus 250 i~~PvLii~G~~D~ivp~~~~~~l~~~i 277 (330)
T PLN02298 250 VSIPFIVLHGSADVVTDPDVSRALYEEA 277 (330)
T ss_pred cCCCEEEEecCCCCCCCHHHHHHHHHHh
Confidence 359999999999998877 555555554
No 49
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=43.29 E-value=26 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=20.0
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc-CCc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS-GSK 56 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~-G~y 56 (59)
++++||.|-.|+.. +.++.+.+.+.- ++|
T Consensus 57 v~~~HG~g~~~s~~-~~~~a~~l~~~g~~v~ 86 (313)
T KOG1455|consen 57 VFLCHGYGEHSSWR-YQSTAKRLAKSGFAVY 86 (313)
T ss_pred EEEEcCCcccchhh-HHHHHHHHHhCCCeEE
Confidence 78999999998764 555656555543 444
No 50
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=40.62 E-value=47 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=21.0
Q ss_pred cceeEeeCCCCCCCCh-hHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQ-GVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~-gm~~~~~ll~~ 51 (59)
.|++.|||-||-=-++ -+.++++.+++
T Consensus 54 yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~ 81 (207)
T PF13709_consen 54 YPFLYWPGHGDFPLSDEEIANLRRYLEN 81 (207)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHc
Confidence 8999999998883344 77777777765
No 51
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=39.96 E-value=32 Score=23.28 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=17.0
Q ss_pred cCcce-eEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 23 RSIPF-IVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 23 ~~~Pv-ViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
.+.|+ ++.||.|++..+- ....+.++++
T Consensus 40 ~~~P~vvllHG~~~~~~~~~~~~~~~~la~ 69 (275)
T TIGR02821 40 GPVPVLWYLSGLTCTHENFMIKAGAQRFAA 69 (275)
T ss_pred CCCCEEEEccCCCCCccHHHhhhHHHHHHh
Confidence 45675 6779999887643 2334445554
No 52
>PF11165 DUF2949: Protein of unknown function (DUF2949); InterPro: IPR021336 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=39.74 E-value=5.6 Score=22.95 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.1
Q ss_pred ccccCcceeEee-CC
Q 046457 20 PVSRSIPFIVLH-GI 33 (59)
Q Consensus 20 ~~~~~~PvViwH-Gl 33 (59)
....|.|+|+|. |+
T Consensus 29 ~~~~pLPmiLWqyGL 43 (58)
T PF11165_consen 29 QDQGPLPMILWQYGL 43 (58)
T ss_pred ccCCCcchHHHHhcc
Confidence 456789999996 75
No 53
>PF10000 ACT_3: ACT domain; InterPro: IPR018717 This domain has no known function.; PDB: 1ZVP_C.
Probab=39.03 E-value=14 Score=21.64 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=14.0
Q ss_pred hhHHHHHHHHhhcc-----CCceeC
Q 046457 40 QGVKQFTENLSSFS-----GSKGYC 59 (59)
Q Consensus 40 ~gm~~~~~ll~~~~-----G~yv~c 59 (59)
+|..+++++|++.. |.||+|
T Consensus 2 sGe~dL~~LL~~m~P~L~~~~yVF~ 26 (72)
T PF10000_consen 2 SGETDLDTLLASMSPELNPGEYVFC 26 (72)
T ss_dssp HHHHHHHHHCST-EEEE-SS-EEEE
T ss_pred CcHhHHHHHHhhCCcEeCCCCEEEE
Confidence 46778888888764 899887
No 54
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=38.67 E-value=16 Score=26.20 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.2
Q ss_pred eeCCCCCCCCh-hHHHHHHHHhhcc
Q 046457 30 LHGIGDQCSNQ-GVKQFTENLSSFS 53 (59)
Q Consensus 30 wHGlGDsC~n~-gm~~~~~ll~~~~ 53 (59)
.=|+||-= |+ ||+++++.+++.+
T Consensus 178 tigIGDGG-NEiGMG~v~~~v~~~i 201 (291)
T PF14336_consen 178 TIGIGDGG-NEIGMGNVKEAVKKHI 201 (291)
T ss_pred EEEECCCc-hhcccChHHHHHHHhC
Confidence 34899986 77 9999999998766
No 55
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=38.57 E-value=38 Score=23.00 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred CcceeEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 24 SIPFIVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
++|+.+.||-.|.-+.+ ...++.+.+.
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~ 275 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP 275 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC
Confidence 58999999999998866 5555555554
No 56
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=37.69 E-value=38 Score=19.58 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.1
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
+++-||--+.-.|..+.++.+.+++..
T Consensus 3 vlv~hGS~~~~~~~~~~~l~~~l~~~~ 29 (101)
T cd03416 3 LLVGHGSRDPRAAEALEALAERLRERL 29 (101)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhhC
Confidence 456699888766778888888888765
No 57
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=36.15 E-value=44 Score=21.21 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=20.3
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
.+.|+.++||-.|....+ ...++.+.+.
T Consensus 219 i~~P~lii~g~~D~~vp~~~~~~~~~~~~ 247 (278)
T TIGR03056 219 ITIPLHLIAGEEDKAVPPDESKRAATRVP 247 (278)
T ss_pred CCCCEEEEEeCCCcccCHHHHHHHHHhcc
Confidence 358999999999998876 4444544443
No 58
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=36.00 E-value=21 Score=22.38 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=8.5
Q ss_pred ccccCcceeEeeCCCC
Q 046457 20 PVSRSIPFIVLHGIGD 35 (59)
Q Consensus 20 ~~~~~~PvViwHGlGD 35 (59)
.....+|+++.||-=+
T Consensus 88 ~~~~aiPLll~HGWPg 103 (112)
T PF06441_consen 88 KRPNAIPLLLLHGWPG 103 (112)
T ss_dssp S-TT-EEEEEE--SS-
T ss_pred CCCCCeEEEEECCCCc
Confidence 3456799999999543
No 59
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=35.94 E-value=25 Score=23.92 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=16.2
Q ss_pred CcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 24 SIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
..|+|+.||.|.+-. ....+.+.+.+
T Consensus 131 ~~~vl~~HG~~~~~~--~~~~~~~~l~~ 156 (371)
T PRK14875 131 GTPVVLIHGFGGDLN--NWLFNHAALAA 156 (371)
T ss_pred CCeEEEECCCCCccc--hHHHHHHHHhc
Confidence 478999999886532 34444444443
No 60
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=35.86 E-value=71 Score=22.09 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=16.0
Q ss_pred cceeEeeCCCCCCCChhHHHHHH
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTE 47 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ 47 (59)
.++|+.||.+++....-...+.+
T Consensus 37 p~vilIHG~~~~~~~~~~~~l~~ 59 (275)
T cd00707 37 PTRFIIHGWTSSGEESWISDLRK 59 (275)
T ss_pred CcEEEEcCCCCCCCCcHHHHHHH
Confidence 46899999998874444555554
No 61
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=35.38 E-value=50 Score=23.20 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=15.8
Q ss_pred ceeEeeCCCCCCCC--hhHHHHHHHHh
Q 046457 26 PFIVLHGIGDQCSN--QGVKQFTENLS 50 (59)
Q Consensus 26 PvViwHGlGDsC~n--~gm~~~~~ll~ 50 (59)
++|+.||.|.+... ..+..+.+.+.
T Consensus 27 ~VlllHG~g~~~~~~~~~~~~la~~La 53 (266)
T TIGR03101 27 VVIYLPPFAEEMNKSRRMVALQARAFA 53 (266)
T ss_pred EEEEECCCcccccchhHHHHHHHHHHH
Confidence 36799999976543 24555555554
No 62
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=35.28 E-value=38 Score=24.33 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=15.8
Q ss_pred CcceeEeeCCCCCCCCh-hHHHH
Q 046457 24 SIPFIVLHGIGDQCSNQ-GVKQF 45 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~-gm~~~ 45 (59)
..|+|+-||++....+= +|...
T Consensus 59 ~~pivlVhG~~~~~~~~~~~~~~ 81 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLPLDYR 81 (336)
T ss_pred CceEEEEccCcCCcchhhhhhhh
Confidence 57999999987665543 55554
No 63
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=34.97 E-value=52 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=17.3
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHH
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTEN 48 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~l 48 (59)
..-|+|+.||.+++.... -+.++.+.
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~a 66 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAA 66 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHH
Confidence 346789999999876433 45555543
No 64
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=34.10 E-value=35 Score=19.52 Aligned_cols=14 Identities=7% Similarity=0.515 Sum_probs=10.0
Q ss_pred CCCCCChhHHHHHH
Q 046457 34 GDQCSNQGVKQFTE 47 (59)
Q Consensus 34 GDsC~n~gm~~~~~ 47 (59)
|..|||+.|.++.+
T Consensus 3 ~~~Cn~~~L~~ii~ 16 (76)
T PF04155_consen 3 DNKCNSEELRKIIL 16 (76)
T ss_pred CCccCCHHHHHHHH
Confidence 56788887766544
No 65
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=33.15 E-value=41 Score=19.91 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=21.9
Q ss_pred cceeEeeCCCCCCCCh-hHHHHHHHHhhccCCceeC
Q 046457 25 IPFIVLHGIGDQCSNQ-GVKQFTENLSSFSGSKGYC 59 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~-gm~~~~~ll~~~~G~yv~c 59 (59)
+|+|+ |.+| -+-++...+++.-|+|+.|
T Consensus 18 LPLv~-------Y~~Pe~Vi~iIN~lR~keGvYG~c 46 (63)
T PF03295_consen 18 LPLVF-------YEDPEEVINIINELRNKEGVYGSC 46 (63)
T ss_pred Eeeee-------ccCHHHHHHHHHHhhhccCceeEE
Confidence 57765 3567 7888888888877999987
No 66
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=31.81 E-value=33 Score=24.18 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=16.2
Q ss_pred HHHHHHHcccccCcceeEe-eCC
Q 046457 12 TVLLLFFFPVSRSIPFIVL-HGI 33 (59)
Q Consensus 12 ~~~~~~~~~~~~~~PvViw-HGl 33 (59)
++++.+++.....+|+++| ||+
T Consensus 184 Agl~g~~~k~~~g~P~lLTEHGI 206 (268)
T PF11997_consen 184 AGLLGALAKYRYGRPFLLTEHGI 206 (268)
T ss_pred HHHHHHHHHHHhCCCEEEecCCc
Confidence 4455566666777999999 895
No 67
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=31.78 E-value=1.1e+02 Score=21.75 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=28.2
Q ss_pred HHcccccCcceeEeeCCCCCCCChhHHHHHHHHhhccC
Q 046457 17 FFFPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFSG 54 (59)
Q Consensus 17 ~~~~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~G 54 (59)
-.+..+++.|+++. +-+.|+.+.-..+.+.+++..|
T Consensus 81 ~~AF~~s~yPvIlS--lE~Hcs~~qQ~~ma~~l~~~lG 116 (227)
T cd08594 81 KYAFIKNEYPVILS--IENHCSVQQQKKMAQYLKEILG 116 (227)
T ss_pred HhhccCCCCCEEEE--ecccCCHHHHHHHHHHHHHHHh
Confidence 34556789999997 9999988788888888877653
No 68
>PRK13604 luxD acyl transferase; Provisional
Probab=31.73 E-value=61 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=21.0
Q ss_pred CcceeEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 24 SIPFIVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
.+|+.+.||-.|+-..+ ...++.+.+.
T Consensus 202 ~~PvLiIHG~~D~lVp~~~s~~l~e~~~ 229 (307)
T PRK13604 202 DIPFIAFTANNDSWVKQSEVIDLLDSIR 229 (307)
T ss_pred CCCEEEEEcCCCCccCHHHHHHHHHHhc
Confidence 49999999999999987 4446665553
No 69
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=31.68 E-value=59 Score=20.24 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=19.5
Q ss_pred cCcceeEeeCCCCCCCChhHHHHHHHHh
Q 046457 23 RSIPFIVLHGIGDQCSNQGVKQFTENLS 50 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~gm~~~~~ll~ 50 (59)
...|+.++||--|.........+.+.+.
T Consensus 230 i~~P~lii~G~~D~~~~~~~~~~~~~~~ 257 (288)
T TIGR01250 230 IKVPTLLTVGEFDTMTPEAAREMQELIA 257 (288)
T ss_pred cCCCEEEEecCCCccCHHHHHHHHHhcc
Confidence 3589999999999864335555555543
No 70
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=31.67 E-value=95 Score=20.75 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=19.2
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
++..||+.-|-.+.--..+++.+++..
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~ 28 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHG 28 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhC
Confidence 467899888777776667777776643
No 71
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=31.57 E-value=45 Score=20.28 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=23.3
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHHHHHHHhh
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQFTENLSS 51 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~~~~ll~~ 51 (59)
...+|+.+.+|..|.-..+ ....+++.+.+
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~ 203 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLIPN 203 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHSTT
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 4679999999999997766 66666666654
No 72
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=31.45 E-value=56 Score=22.98 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=19.5
Q ss_pred CcceeEeeCCCCCCCCh-hHHHHHHH
Q 046457 24 SIPFIVLHGIGDQCSNQ-GVKQFTEN 48 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~-gm~~~~~l 48 (59)
..|+.+.||-.|...++ +..++.+.
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~ 295 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNK 295 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHh
Confidence 58999999999999887 55555443
No 73
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=31.11 E-value=89 Score=24.24 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=18.9
Q ss_pred cccCcceeEeeCCCCCCCCh--hHHHHHHH
Q 046457 21 VSRSIPFIVLHGIGDQCSNQ--GVKQFTEN 48 (59)
Q Consensus 21 ~~~~~PvViwHGlGDsC~n~--gm~~~~~l 48 (59)
-....|+.+.||..|.=+.. ++.=+..+
T Consensus 548 ~~i~~P~LliHG~~D~~v~~~q~~~~~~aL 577 (620)
T COG1506 548 DNIKTPLLLIHGEEDDRVPIEQAEQLVDAL 577 (620)
T ss_pred cccCCCEEEEeecCCccCChHHHHHHHHHH
Confidence 34569999999999986643 44433333
No 74
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=30.25 E-value=1.7e+02 Score=20.28 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=20.8
Q ss_pred cccCcceeEeeCCCCCCCChhHHHHHHHHhhccCCce
Q 046457 21 VSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKG 57 (59)
Q Consensus 21 ~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~G~yv 57 (59)
.+.+.-+.+||+..+.. ..+.++.+..++..|+-|
T Consensus 27 ~~~~~~l~~w~~~~~~~--~~~~~~~~~F~~~~gi~V 61 (396)
T PRK09474 27 KIEEGKLVIWINGDKGY--NGLAEVGKKFEKDTGIKV 61 (396)
T ss_pred ccCCCeEEEEECCCchh--HHHHHHHHHHHHhhCCEE
Confidence 45568899999742221 256666666665556543
No 75
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=30.24 E-value=64 Score=19.84 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=19.9
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHH
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENL 49 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll 49 (59)
...|+.++||--|.-+.+ ...++.+.+
T Consensus 197 i~~P~l~i~g~~D~~~~~~~~~~~~~~~ 224 (257)
T TIGR03611 197 IQHPVLLIANRDDMLVPYTQSLRLAAAL 224 (257)
T ss_pred cCccEEEEecCcCcccCHHHHHHHHHhc
Confidence 468999999999998876 444455443
No 76
>PF06377 Adipokin_hormo: Adipokinetic hormone; InterPro: IPR010475 This family consists of several insect adipokinetic hormone as well as the related crustacean red pigment concentrating hormone (RPCH) []. Flight activity of insects comprises one of the most intense biochemical processes known in nature, and therefore provides an attractive model system to study the hormonal regulation of metabolism during physical exercise. In long-distance flying insects, such as the migratory locust, both carbohydrate and lipid reserves are utilised as fuels for sustained flight activity. The mobilisation of these energy stores in Locusta migratoria (Migratory locust) is mediated by three structurally related adipokinetic hormones (AKHs), which are all capable of stimulating the release of both carbohydrates and lipids from the fat body [].; GO: 0005179 hormone activity
Probab=30.02 E-value=55 Score=18.29 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=16.0
Q ss_pred CCCCCCCh--hHHHHHHHHhhc
Q 046457 33 IGDQCSNQ--GVKQFTENLSSF 52 (59)
Q Consensus 33 lGDsC~n~--gm~~~~~ll~~~ 52 (59)
-+|+|.++ .+..+-++|+++
T Consensus 18 ~~~~C~~s~e~l~~iy~~iQ~E 39 (48)
T PF06377_consen 18 RADDCKSSVESLLHIYKLIQNE 39 (48)
T ss_pred CCCCCCCcHHHHHHHHHHHHHH
Confidence 47999965 888888888865
No 77
>PRK05855 short chain dehydrogenase; Validated
Probab=29.56 E-value=31 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=16.7
Q ss_pred CcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 24 SIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
..|+|+.||++++ ......+.+.+.+
T Consensus 25 ~~~ivllHG~~~~--~~~w~~~~~~L~~ 50 (582)
T PRK05855 25 RPTVVLVHGYPDN--HEVWDGVAPLLAD 50 (582)
T ss_pred CCeEEEEcCCCch--HHHHHHHHHHhhc
Confidence 4589999999854 2344555555543
No 78
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=29.46 E-value=59 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=19.8
Q ss_pred cCcceeEeeCCCCCCCChh-HHHHHHHH
Q 046457 23 RSIPFIVLHGIGDQCSNQG-VKQFTENL 49 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~g-m~~~~~ll 49 (59)
...|+.+++|--|.+.++. ..++.+.+
T Consensus 222 i~~Pvlli~G~~D~~v~~~~~~~~~~~~ 249 (282)
T TIGR03343 222 IKAKTLVTWGRDDRFVPLDHGLKLLWNM 249 (282)
T ss_pred CCCCEEEEEccCCCcCCchhHHHHHHhC
Confidence 4589999999999998874 34444444
No 79
>COG0400 Predicted esterase [General function prediction only]
Probab=29.28 E-value=1.1e+02 Score=20.92 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=25.5
Q ss_pred cccCcceeEeeCCCCCCCCh-hHHHHHHHHhhc
Q 046457 21 VSRSIPFIVLHGIGDQCSNQ-GVKQFTENLSSF 52 (59)
Q Consensus 21 ~~~~~PvViwHGlGDsC~n~-gm~~~~~ll~~~ 52 (59)
....+|+.+.||-=|.=+.. -..+.++.+++.
T Consensus 143 ~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~ 175 (207)
T COG0400 143 DLAGTPILLSHGTEDPVVPLALAEALAEYLTAS 175 (207)
T ss_pred ccCCCeEEEeccCcCCccCHHHHHHHHHHHHHc
Confidence 45559999999999986655 778888888874
No 80
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=29.23 E-value=42 Score=22.16 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=12.0
Q ss_pred HHHHHHHhhcc-CCceeC
Q 046457 43 KQFTENLSSFS-GSKGYC 59 (59)
Q Consensus 43 ~~~~~ll~~~~-G~yv~c 59 (59)
..|.+-|++.- |+|++|
T Consensus 97 ~~I~~AL~Ri~~gtYG~C 114 (151)
T PRK10778 97 KKIEKTLKKVEDEDFGYC 114 (151)
T ss_pred HHHHHHHHHHhCCCCcee
Confidence 45555566655 999998
No 81
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=29.18 E-value=66 Score=18.11 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=17.3
Q ss_pred cccCcceeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 21 VSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 21 ~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
......+.+.||.|.. +..|. +++.++++.
T Consensus 24 ~~~~~~~~II~G~G~h-S~~g~--Lk~~V~~~L 53 (83)
T PF01713_consen 24 QRGIRELRIITGKGNH-SKGGV--LKRAVRRWL 53 (83)
T ss_dssp HTTHSEEEEE--STCT-CCTSH--HHHHHHHHH
T ss_pred HcCCCEEEEEeccCCC-CCCCc--HHHHHHHHH
Confidence 3445889999999933 22243 777666654
No 82
>TIGR03299 LGT_TIGR03299 phage/plasmid-related protein TIGR03299. Members of this uncharacterized protein family are found in various Mycobacterium phage genomes, in Streptomyces coelicolor plasmid SCP1, and in bacterial genomes near various markers that suggest lateral gene transfer. The function is unknown.
Probab=28.92 E-value=21 Score=26.25 Aligned_cols=18 Identities=17% Similarity=0.612 Sum_probs=11.6
Q ss_pred eeCCCCCCCCh-hHHHHHH
Q 046457 30 LHGIGDQCSNQ-GVKQFTE 47 (59)
Q Consensus 30 wHGlGDsC~n~-gm~~~~~ 47 (59)
|||+|-.-..+ ......+
T Consensus 11 WHgLG~~l~~~~~~e~~~~ 29 (309)
T TIGR03299 11 WHGLGNHLPGRQPIDDWAR 29 (309)
T ss_pred cccCCccCCCCCCHHHHHH
Confidence 99999877543 5444443
No 83
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=28.54 E-value=67 Score=19.44 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=20.2
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
+++-||--|.-.|..+.++.+.+++..
T Consensus 5 vlv~hGS~~~~~~~~~~~~~~~l~~~~ 31 (126)
T PRK00923 5 LLVGHGSRLPYNKEVVTKIAEKIKEKH 31 (126)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHhC
Confidence 456688888766778888888887754
No 84
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=27.06 E-value=72 Score=23.45 Aligned_cols=26 Identities=27% Similarity=0.691 Sum_probs=20.3
Q ss_pred CcceeEeeCCCCCCCCh-hHHHHHHHH
Q 046457 24 SIPFIVLHGIGDQCSNQ-GVKQFTENL 49 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~-gm~~~~~ll 49 (59)
.+|+.++||-.|.-..+ ...++.+.+
T Consensus 324 ~vPvLIi~G~~D~vvp~~~a~~l~~~~ 350 (395)
T PLN02652 324 TVPFMVLHGTADRVTDPLASQDLYNEA 350 (395)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhc
Confidence 59999999999999976 555554443
No 85
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=27.03 E-value=49 Score=20.24 Aligned_cols=16 Identities=38% Similarity=0.864 Sum_probs=10.3
Q ss_pred HHHHHHhhcc-CCceeC
Q 046457 44 QFTENLSSFS-GSKGYC 59 (59)
Q Consensus 44 ~~~~ll~~~~-G~yv~c 59 (59)
.+..-++..- |+|++|
T Consensus 67 ~i~~AL~ri~~g~yG~C 83 (110)
T TIGR02420 67 KIDEALKRIEDGEYGYC 83 (110)
T ss_pred HHHHHHHHHhCCCCCch
Confidence 4444455554 999998
No 86
>PRK05634 nucleosidase; Provisional
Probab=26.90 E-value=64 Score=21.38 Aligned_cols=35 Identities=9% Similarity=0.248 Sum_probs=26.3
Q ss_pred HHcccccCcceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 17 FFFPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 17 ~~~~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
..+.....+|++....+.|.+....-..+++.+++
T Consensus 138 a~va~~~~vPf~~iR~ISD~a~~~~~~~~~~~~~~ 172 (185)
T PRK05634 138 AAVAAEFGVPCRLVKHVSDSADESALGSWPEAVDA 172 (185)
T ss_pred HHHHHHhCCCEEEEEEeccCCCCcccccHHHHHHH
Confidence 34445667999999999999997766667765543
No 87
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=26.79 E-value=80 Score=19.03 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=20.3
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
.+.|+.++||--|.-..+ ...++.+.+.
T Consensus 192 ~~~Pvlii~g~~D~~~~~~~~~~~~~~~~ 220 (251)
T TIGR02427 192 IAVPTLCIAGDQDGSTPPELVREIADLVP 220 (251)
T ss_pred cCCCeEEEEeccCCcCChHHHHHHHHhCC
Confidence 358999999998887766 5555555544
No 88
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=26.13 E-value=60 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=16.1
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHH
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQ 44 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~ 44 (59)
....|+++.||.+-++..- ++++
T Consensus 2 ~~g~pVlFIhG~~Gs~~q~rsl~~ 25 (225)
T PF07819_consen 2 LSGIPVLFIHGNAGSYKQVRSLAS 25 (225)
T ss_pred CCCCEEEEECcCCCCHhHHHHHHH
Confidence 3568999999987776633 4443
No 89
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=26.07 E-value=46 Score=25.74 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=15.2
Q ss_pred HHcccccCcceeEeeCCCCCCCCh-hH
Q 046457 17 FFFPVSRSIPFIVLHGIGDQCSNQ-GV 42 (59)
Q Consensus 17 ~~~~~~~~~PvViwHGlGDsC~n~-gm 42 (59)
..+..+...-+|++|| -|.|| |.
T Consensus 164 a~L~~a~~~~vvLLH~---CcHNPTG~ 187 (396)
T COG1448 164 ADLKTAPEGSVVLLHG---CCHNPTGI 187 (396)
T ss_pred HHHHhCCCCCEEEEec---CCCCCCCC
Confidence 4445556667999998 23388 65
No 90
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=25.89 E-value=1e+02 Score=21.44 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.6
Q ss_pred CcceeEeeCCCCCCCCh-hHHHHHHHHhh
Q 046457 24 SIPFIVLHGIGDQCSNQ-GVKQFTENLSS 51 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~-gm~~~~~ll~~ 51 (59)
+.|+.+.||-.|.-..+ .+.++.+.+.+
T Consensus 288 ~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~ 316 (351)
T TIGR01392 288 KAPFLVVSITSDWLFPPAESRELAKALPA 316 (351)
T ss_pred CCCEEEEEeCCccccCHHHHHHHHHHHhh
Confidence 47999999999997777 78888888865
No 91
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=25.77 E-value=38 Score=18.70 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=21.0
Q ss_pred ccccCcceeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 20 PVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 20 ~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
......+.|.+||+|..-+ -.-.+.+++++..
T Consensus 25 ~~~~~~~~V~l~g~G~aI~--kaI~vaei~K~~~ 56 (70)
T PF01918_consen 25 RENGKNDEVVLKGRGKAIS--KAISVAEILKRRF 56 (70)
T ss_dssp TTHTTCSEEEEEEECCHHH--HHHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEEEcHHHH--HHHHHHHHHHHhh
Confidence 4456688999999996543 3445555665553
No 92
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=25.56 E-value=78 Score=21.98 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=24.4
Q ss_pred HcccccCcceeEeeCCCCCCCCh-hHHHHHHHHhh
Q 046457 18 FFPVSRSIPFIVLHGIGDQCSNQ-GVKQFTENLSS 51 (59)
Q Consensus 18 ~~~~~~~~PvViwHGlGDsC~n~-gm~~~~~ll~~ 51 (59)
.+.....+|++....+.|.+... .+..+.+.+++
T Consensus 155 qVc~~~~vPfl~iR~ISD~a~~~a~~~df~~f~~~ 189 (212)
T PRK06026 155 RACQAFGVPLIGLRGISDGAAELKHVGDWTEYLHV 189 (212)
T ss_pred HHHHHcCCCEEEEEEEecCCCcccchhhHHHHHHH
Confidence 34456779999999999998754 65555555543
No 93
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=25.26 E-value=92 Score=22.60 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=16.0
Q ss_pred Ccc-eeEeeCCCCCC-CChhHHHHHHHH
Q 046457 24 SIP-FIVLHGIGDQC-SNQGVKQFTENL 49 (59)
Q Consensus 24 ~~P-vViwHGlGDsC-~n~gm~~~~~ll 49 (59)
+.| +|+.||-.|++ ..+.+..+++.+
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~~~~~al 97 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQDMIKAL 97 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHHHHHHHH
T ss_pred CCCeEEEEcCcCCcccchhHHHHHHHHH
Confidence 344 56789999999 566787777744
No 94
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=24.91 E-value=42 Score=24.38 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=10.0
Q ss_pred cceeEeeCCCCC
Q 046457 25 IPFIVLHGIGDQ 36 (59)
Q Consensus 25 ~PvViwHGlGDs 36 (59)
.|+|+.||.|.+
T Consensus 106 p~vvllHG~~~~ 117 (402)
T PLN02894 106 PTLVMVHGYGAS 117 (402)
T ss_pred CEEEEECCCCcc
Confidence 679999999854
No 95
>PLN02578 hydrolase
Probab=24.26 E-value=86 Score=21.97 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=21.5
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHHhh
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENLSS 51 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll~~ 51 (59)
.+.|+.+.||-.|....+ ...++++.+.+
T Consensus 295 i~~PvLiI~G~~D~~v~~~~~~~l~~~~p~ 324 (354)
T PLN02578 295 LSCPLLLLWGDLDPWVGPAKAEKIKAFYPD 324 (354)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCC
Confidence 469999999999987755 55556665543
No 96
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=23.81 E-value=1.1e+02 Score=21.47 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=19.1
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
+.+.||||+-.-+.--..+.+.+++++
T Consensus 92 f~i~~slgGGTGsG~~~~i~e~l~d~y 118 (328)
T cd00286 92 FFITHSLGGGTGSGLGPVLAERLKDEY 118 (328)
T ss_pred eEEEeecCCCccccHHHHHHHHHHHHc
Confidence 788999998644433345778888876
No 97
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=23.75 E-value=62 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=15.2
Q ss_pred ccCcceeEeeCCCCCCCChhHHHHHHHHh
Q 046457 22 SRSIPFIVLHGIGDQCSNQGVKQFTENLS 50 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~gm~~~~~ll~ 50 (59)
.+.+|.++.||-|-+-.+. ..+.+-++
T Consensus 9 ~~~tPTifihG~~gt~~s~--~~mi~~~~ 35 (255)
T PF06028_consen 9 QSTTPTIFIHGYGGTANSF--NHMINRLE 35 (255)
T ss_dssp -S-EEEEEE--TTGGCCCC--HHHHHHHH
T ss_pred cCCCcEEEECCCCCChhHH--HHHHHHHH
Confidence 4569999999998775543 34444444
No 98
>PLN02511 hydrolase
Probab=23.67 E-value=1.2e+02 Score=21.96 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=12.6
Q ss_pred ceeEeeCCCCCCCChhHHHHH
Q 046457 26 PFIVLHGIGDQCSNQGVKQFT 46 (59)
Q Consensus 26 PvViwHGlGDsC~n~gm~~~~ 46 (59)
++|+.||++-+..+.-+..+.
T Consensus 102 ~vvllHG~~g~s~~~y~~~~~ 122 (388)
T PLN02511 102 VLILLPGLTGGSDDSYVRHML 122 (388)
T ss_pred EEEEECCCCCCCCCHHHHHHH
Confidence 499999995543333344443
No 99
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1
Probab=23.60 E-value=50 Score=22.94 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=10.0
Q ss_pred eeEeeCCCCCCC
Q 046457 27 FIVLHGIGDQCS 38 (59)
Q Consensus 27 vViwHGlGDsC~ 38 (59)
+|+|+|.|+-|.
T Consensus 105 ~vvW~~v~~l~f 116 (189)
T PF15001_consen 105 IVVWLGVGSLCF 116 (189)
T ss_pred EEEeeccCCEEE
Confidence 899999987663
No 100
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=23.41 E-value=57 Score=22.88 Aligned_cols=27 Identities=11% Similarity=0.397 Sum_probs=18.4
Q ss_pred CcceeEeeCCCCCCCChhHHHHHHHHhhc
Q 046457 24 SIPFIVLHGIGDQCSNQGVKQFTENLSSF 52 (59)
Q Consensus 24 ~~PvViwHGlGDsC~n~gm~~~~~ll~~~ 52 (59)
..|+.++||..|.=... ....++.+++
T Consensus 219 ~~Pv~i~~g~~D~vvP~--~~~~~l~~~~ 245 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPP--ADTDALVAKW 245 (290)
T ss_pred CCCEEEEecCCCCCCCh--HHHHHHHHHH
Confidence 49999999999985533 3444455544
No 101
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=23.41 E-value=72 Score=19.17 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=24.8
Q ss_pred ccCcceeEeeCCCCCCCChhHHHHHHHHhhcc-CCce
Q 046457 22 SRSIPFIVLHGIGDQCSNQGVKQFTENLSSFS-GSKG 57 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~-G~yv 57 (59)
....|+++|.|= |....-||..+-..|++.. .+|+
T Consensus 84 ~~~~~I~iW~~~-~~~dq~gl~~~l~~L~~~~~~I~~ 119 (124)
T PF08874_consen 84 PEDDPIVIWYGD-NAYDQLGLRYLLSLLKDKPNRIYV 119 (124)
T ss_pred CCCCEEEEEeCC-CHHHHHHHHHHHHHhcCCCCeEEE
Confidence 344599999863 4444449999999998876 5554
No 102
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=23.22 E-value=1.8e+02 Score=21.02 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=26.7
Q ss_pred HHcccccCcceeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 17 FFFPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 17 ~~~~~~~~~PvViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
-.+..+++.|+++. |-+.|+.+.=..+.+++++..
T Consensus 81 ~~AF~~s~yPvIls--lE~Hcs~~qQ~~ma~~l~~~l 115 (254)
T cd08633 81 KYAFIKNEYPVILS--IENHCSVPQQKKMAQYLTEIL 115 (254)
T ss_pred HHhccCCCCCEEEE--ecccCCHHHHHHHHHHHHHHH
Confidence 34556788999986 899998777777777777755
No 103
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]
Probab=23.14 E-value=59 Score=24.76 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=22.3
Q ss_pred cceeEeeCCCCCCCCh-hHHHHHHHHhhccCCce
Q 046457 25 IPFIVLHGIGDQCSNQ-GVKQFTENLSSFSGSKG 57 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~-gm~~~~~ll~~~~G~yv 57 (59)
-|+++. --+.+++ .|.++||.+++ |.||
T Consensus 205 DPIIlv---p~saSS~lt~~NIK~FleE--gkyV 233 (362)
T COG5157 205 DPIILV---PQSASSPLTLSNIKEFLEE--GKYV 233 (362)
T ss_pred CceEEe---ccccccceeHHHHHHHHHh--cCcc
Confidence 567664 4566777 99999999999 8887
No 104
>PLN02442 S-formylglutathione hydrolase
Probab=23.09 E-value=1.4e+02 Score=20.52 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=21.3
Q ss_pred cCcceeEeeCCCCCCCCh--hHHHHHHHHhh
Q 046457 23 RSIPFIVLHGIGDQCSNQ--GVKQFTENLSS 51 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~--gm~~~~~ll~~ 51 (59)
..+|+.++||=-|..+.. .-..+.+.+++
T Consensus 216 ~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~ 246 (283)
T PLN02442 216 VSATILIDQGEADKFLKEQLLPENFEEACKE 246 (283)
T ss_pred cCCCEEEEECCCCccccccccHHHHHHHHHH
Confidence 468999999999987664 24566666654
No 105
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=22.91 E-value=95 Score=18.27 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=18.6
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
+++-||--|.=.+..+.++.+.+++..
T Consensus 4 llv~HGS~~~~~~~~~~~l~~~l~~~~ 30 (117)
T cd03414 4 VLVGRGSSDPDANADVAKIARLLEEGT 30 (117)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 456688776655667777887777655
No 106
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=22.31 E-value=87 Score=17.55 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=18.3
Q ss_pred cceeEeeCCCCCCCChhHHHHHHHHhh
Q 046457 25 IPFIVLHGIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 25 ~PvViwHGlGDsC~n~gm~~~~~ll~~ 51 (59)
=|+|+++ |.-|.+-.-.++.+++++
T Consensus 55 gP~v~v~--g~~y~~vt~~~i~~i~~~ 79 (80)
T cd03064 55 APVMMIN--DDVYGRLTPEKVDAILEA 79 (80)
T ss_pred CCEEEEC--CEEECCCCHHHHHHHHHh
Confidence 6888887 456766666788887765
No 107
>PF10216 ChpXY: CO2 hydration protein (ChpXY); InterPro: IPR010220 This small family of proteins includes paralogs ChpX and ChpY in Synechococcus sp. (strain PCC 7942) (Anacystis nidulans R2) and other cyanobacteria, associated with distinct NAD(P)H dehydrogenase complexes. These proteins collectively enable light-dependent CO2 hydration and CO2 uptake; loss of both blocks growth at low CO2 concentrations.
Probab=22.31 E-value=50 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.2
Q ss_pred eeEeeCCC--CCCCCh
Q 046457 27 FIVLHGIG--DQCSNQ 40 (59)
Q Consensus 27 vViwHGlG--DsC~n~ 40 (59)
-.+|||-| |.+-++
T Consensus 87 aM~WHggGglD~YLDs 102 (353)
T PF10216_consen 87 AMLWHGGGGLDAYLDS 102 (353)
T ss_pred HhhccCCCCcccccCC
Confidence 36899988 777654
No 108
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.28 E-value=1.3e+02 Score=19.24 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=20.7
Q ss_pred ccCcceeEeeCCCCCCCCh-hHHHHHHHHhhc
Q 046457 22 SRSIPFIVLHGIGDQCSNQ-GVKQFTENLSSF 52 (59)
Q Consensus 22 ~~~~PvViwHGlGDsC~n~-gm~~~~~ll~~~ 52 (59)
..+.|+.+.||--|.-..+ ...++.+.+++.
T Consensus 143 ~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~ 174 (218)
T PF01738_consen 143 KIKAPVLILFGENDPFFPPEEVEALEEALKAA 174 (218)
T ss_dssp G--S-EEEEEETT-TTS-HHHHHHHHHHHHCT
T ss_pred ccCCCEeecCccCCCCCChHHHHHHHHHHHhc
Confidence 3458999999999998877 678888888543
No 109
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=21.97 E-value=77 Score=21.07 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=21.8
Q ss_pred eeEeeCCCCCCCChhH-HHHHHHHhhcc-CCcee
Q 046457 27 FIVLHGIGDQCSNQGV-KQFTENLSSFS-GSKGY 58 (59)
Q Consensus 27 vViwHGlGDsC~n~gm-~~~~~ll~~~~-G~yv~ 58 (59)
+++.||||.- ..+|+ -.+.+.+++.+ +.++.
T Consensus 127 ~~i~~slgGG-TGSG~~~~l~~~l~~~y~~~~~~ 159 (216)
T PF00091_consen 127 FFIVHSLGGG-TGSGLGPVLAEMLREEYPKKPII 159 (216)
T ss_dssp EEEEEESSSS-HHHHHHHHHHHHHHHTSTTSEEE
T ss_pred ceecccccce-eccccccccchhhhcccccccee
Confidence 7889999976 33344 47888888887 66553
No 110
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=21.88 E-value=54 Score=16.96 Aligned_cols=15 Identities=27% Similarity=0.487 Sum_probs=10.5
Q ss_pred HcccccCcceeEeeC
Q 046457 18 FFPVSRSIPFIVLHG 32 (59)
Q Consensus 18 ~~~~~~~~PvViwHG 32 (59)
++....|.-+++.||
T Consensus 26 ~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 26 FIEQLNPRKVILVHG 40 (43)
T ss_dssp HHHHHCSSEEEEESS
T ss_pred HHHhcCCCEEEEecC
Confidence 344446688889998
No 111
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=21.80 E-value=88 Score=17.75 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhccCCce
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFSGSKG 57 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~G~yv 57 (59)
=.+.+|+|+- -+.-+.+.|++.+|+-+
T Consensus 45 e~~l~g~Gel----hlev~~~~L~~~~~v~v 71 (75)
T PF14492_consen 45 ELILSGMGEL----HLEVLLERLKRRFGVEV 71 (75)
T ss_dssp EEEEEESSHH----HHHHHHHHHHHTTCEBE
T ss_pred eEEEEECCHH----HHHHHHHHHHHHHCCee
Confidence 4677899965 68888888888876644
No 112
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=21.71 E-value=3.1e+02 Score=20.14 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=23.5
Q ss_pred HcccccCcceeEee-CCCCCCCChhHHHHHHHHhh
Q 046457 18 FFPVSRSIPFIVLH-GIGDQCSNQGVKQFTENLSS 51 (59)
Q Consensus 18 ~~~~~~~~PvViwH-GlGDsC~n~gm~~~~~ll~~ 51 (59)
.++.....|.|+-| |-....---++.+|++-++.
T Consensus 19 ~~~~~~~~pliiAHRGas~~~PENTl~Af~~A~~~ 53 (355)
T PRK11143 19 AAAADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQ 53 (355)
T ss_pred HhhhcCCCcEEEECCCCCCCCCcchHHHHHHHHHc
Confidence 34456779999999 64322221189999999886
No 113
>cd00247 Endostatin-like Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; endostatin XVIII is monomeric and contains a heparin-binding epitope and zinc binding sites while endostatin XV is trimeric and contains neither of these sites; the generation of endostatin or endostatin-like collagen XV/XVIII fragments is catalyzed by proteolytic enzymes within the protease-sensitive hinge region of the C-terminal domain; endostatin inhibits endothelial cell migration in vitro and appears to be highly effective in murine in vivo studies
Probab=21.69 E-value=40 Score=23.35 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.0
Q ss_pred eEeeC-------CCCCCCC
Q 046457 28 IVLHG-------IGDQCSN 39 (59)
Q Consensus 28 ViwHG-------lGDsC~n 39 (59)
.+||| +.|++|.
T Consensus 112 ~vWHGS~~~G~r~~~~yC~ 130 (171)
T cd00247 112 MVWHGSDPNGRRLTDSYCE 130 (171)
T ss_pred eeEecCCCCCcChhhchhh
Confidence 68999 4677774
No 114
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=21.45 E-value=1.1e+02 Score=21.34 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=23.1
Q ss_pred HcccccCcceeEeeCCCCCCCC-hhHHHHHHHHh
Q 046457 18 FFPVSRSIPFIVLHGIGDQCSN-QGVKQFTENLS 50 (59)
Q Consensus 18 ~~~~~~~~PvViwHGlGDsC~n-~gm~~~~~ll~ 50 (59)
.+.....+|++....+.|..+. .++..+.+.++
T Consensus 155 ~vc~~~~vpf~~iR~ISD~a~~~~~~~df~~f~~ 188 (212)
T TIGR01705 155 RACQLFDVPLIGLRGISDGAADLNHVDDWTAYLD 188 (212)
T ss_pred HHHHHcCCCEEEEEEEecCCCCccchhhHHHHHH
Confidence 3445677999999999998654 46555555554
No 115
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=20.90 E-value=1.3e+02 Score=21.86 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=19.4
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
+.+.|+||+-.-+.--..+.+.|++++
T Consensus 92 f~i~~sl~GGTGSG~gs~l~e~l~d~y 118 (382)
T cd06059 92 FQITHSLGGGTGSGLGSLLLELLSDEY 118 (382)
T ss_pred eEEEEecCCCcchhHHHHHHHHHHHhc
Confidence 688999998654443356778888876
No 116
>PLN02965 Probable pheophorbidase
Probab=20.40 E-value=1.2e+02 Score=19.68 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=21.0
Q ss_pred cCcceeEeeCCCCCCCCh-hHHHHHHHHh
Q 046457 23 RSIPFIVLHGIGDQCSNQ-GVKQFTENLS 50 (59)
Q Consensus 23 ~~~PvViwHGlGDsC~n~-gm~~~~~ll~ 50 (59)
.++|..+.+|-.|....+ ....+.+.+.
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~~~~~~~ 220 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDVMVENWP 220 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 569999999999999988 4444444443
No 117
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=20.18 E-value=78 Score=21.04 Aligned_cols=18 Identities=22% Similarity=0.669 Sum_probs=11.3
Q ss_pred HHHHHHHHhhcc-CCceeC
Q 046457 42 VKQFTENLSSFS-GSKGYC 59 (59)
Q Consensus 42 m~~~~~ll~~~~-G~yv~c 59 (59)
+..|.+-|++.- |.|++|
T Consensus 71 L~~Ie~AL~Ri~~G~YG~C 89 (159)
T TIGR02890 71 LREIEHALQKIENGTYGIC 89 (159)
T ss_pred HHHHHHHHHHHhCCCCCee
Confidence 334444455555 999998
No 118
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=20.16 E-value=1.5e+02 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=20.9
Q ss_pred eeEeeCCCCCCCChhHHHHHHHHhhcc
Q 046457 27 FIVLHGIGDQCSNQGVKQFTENLSSFS 53 (59)
Q Consensus 27 vViwHGlGDsC~n~gm~~~~~ll~~~~ 53 (59)
+++.|++|.-.-+..-..+.+.|++++
T Consensus 134 f~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 134 FLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred eEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 788999998766654456778888877
Done!