BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046458
         (960 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AAP|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
           Pneumophila
 pdb|3AAQ|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
           Pneumophila In Complex With The Inhibitor Arl 67156
 pdb|3AAR|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
           Pneumophila In Complex With Amppnp
          Length = 353

 Score = 30.8 bits (68), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 568 FRQGSE-QVIGVVSTRDSTRASSVIAMDTVCHSADDDSMESVENSPGGVDDVNFPSSSAY 626
           FRQ S+ Q++   +   +  A      D +  +   D+++SV+N   GV D+    +S  
Sbjct: 100 FRQQSQWQLVEAKTITGNDEA----LFDWLAVNYKLDTLKSVQNKSVGVMDMG--GASVQ 153

Query: 627 GFFDMNETSELNNSNQAQQSIYSRRATEVVPGEMGISST 665
             F M + +E++  NQ + +IY +     V   +G+  T
Sbjct: 154 IVFPMPKNAEISKHNQVELNIYGQNINLYVHSFLGLGQT 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,020,090
Number of Sequences: 62578
Number of extensions: 1143344
Number of successful extensions: 1982
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1982
Number of HSP's gapped (non-prelim): 2
length of query: 960
length of database: 14,973,337
effective HSP length: 108
effective length of query: 852
effective length of database: 8,214,913
effective search space: 6999105876
effective search space used: 6999105876
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)