BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046458
(960 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M8S7|NIPA_XENTR NIPA-like protein OS=Xenopus tropicalis GN=zc3hc1 PE=2 SV=1
Length = 478
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 88 RLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDA 147
R+ +F W GKP L CA+ GW NI+ D + C SC A L P ++ +
Sbjct: 72 RVESFSSLKWAGKPSELCPLICAKYGWSNIECDMLKCSSCNAYLCASLQPVLDFSKYKQR 131
Query: 148 GQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQ-SLPIIA 206
+ L H C W + CP+ T S+++ + R D L + LP I
Sbjct: 132 CVELQEALRKAHEKFCFWPDSPCPDYFWALMVTEPSSVLSDFVGRFDNLCHLEIQLPSIK 191
Query: 207 TCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMKPELE-NSRDGAFYLYSRAQK-LISLCG 264
+++M ++ + +S LI E+ K E NSR + L +++LCG
Sbjct: 192 HEDLKNMDIT-----EETVSHLLRLIEDELKSKDGREDNSRLASDSLQVHISACILALCG 246
Query: 265 W 265
W
Sbjct: 247 W 247
>sp|Q80YV2|NIPA_MOUSE Nuclear-interacting partner of ALK OS=Mus musculus GN=Zc3hc1 PE=1
SV=1
Length = 501
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 85 LLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEV 144
R+ TF W GKP S L CA+ GW+ ++ D + C SC A L P +
Sbjct: 78 FFHRVETFSSLKWAGKPPELSPLICAKYGWVTVECDMLKCSSCQAFLCASLQPTFDFGRY 137
Query: 145 EDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGL----LQFQ 200
++ K L H C W + P+ P + LI + DR L LQ
Sbjct: 138 KERCAELKKSLCSAHEKFCFWPDSPSPDRFGMLPLGEPAVLISEFLDRFQSLCHLDLQLP 197
Query: 201 SL 202
SL
Sbjct: 198 SL 199
>sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1
Length = 477
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 85 LLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEV 144
R+ +F W GKP L CA+ GW NI+ D + C SC A L P ++
Sbjct: 71 FFSRVESFSSLKWAGKPPELCPLICAKYGWCNIECDMLKCSSCNAYLCASLQPILDFSKY 130
Query: 145 EDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQ-SLP 203
+ + L H C W + CPE T S+++ + +R L + LP
Sbjct: 131 KQRCVELQEALRKAHEKFCFWPDSPCPEHFWALLVTEPSSVLSDFVERFHNLCHLEMQLP 190
Query: 204 IIATCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMKPELENSRDGAFYLYSRAQK----- 258
+ ++ M ++ + RLL LI E ++KP+ E + L S + +
Sbjct: 191 SLKHEDVKSMDITED-TVSRLL----RLI--EDELKPK-EGREANSHSLPSDSLQVHISA 242
Query: 259 -LISLCGW 265
+++LCGW
Sbjct: 243 CILALCGW 250
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 867 FDPIAHHNQFCPWVNGNVAAAGCNGSGSSNSADA-IALCGWQLTLDAL 913
FDP++ H +CPWVN A+G N GS +A GW+ L L
Sbjct: 394 FDPLSQHRSWCPWVNV-CQASGTNTMGSEIQEEARRKEYGWKEVLKVL 440
>sp|Q5R8V9|NIPA_PONAB Nuclear-interacting partner of ALK OS=Pongo abelii GN=ZC3HC1 PE=2
SV=1
Length = 502
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 85 LLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEV 144
R+ TF W GKP S L CA+ GW+ ++ D + C SC A L P +
Sbjct: 78 FFSRVETFSSLKWAGKPPELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRY 137
Query: 145 EDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGL----LQFQ 200
+ K L H C W + P+ P + L+ + DR L LQ
Sbjct: 138 KQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLEEPAILVSEFLDRFQSLCHLDLQLP 197
Query: 201 SL 202
SL
Sbjct: 198 SL 199
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 867 FDPIAHHNQFCPWVNGNVAAAGCNGSGSSNSADAIALCGWQLTLDAL 913
FDP + H +CPWVN + G+ A A A GW+ L L
Sbjct: 419 FDPTSQHRDWCPWVNVTLGKESRENGGTEPDASAPAEPGWKAVLTIL 465
>sp|Q86WB0|NIPA_HUMAN Nuclear-interacting partner of ALK OS=Homo sapiens GN=ZC3HC1 PE=1
SV=1
Length = 502
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 85 LLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEV 144
R+ TF W GKP S L CA+ GW+ ++ D + C SC A L P +
Sbjct: 78 FFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRY 137
Query: 145 EDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGL----LQFQ 200
+ K L H C W + P+ P + L+ + DR L LQ
Sbjct: 138 KQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLP 197
Query: 201 SL 202
SL
Sbjct: 198 SL 199
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 867 FDPIAHHNQFCPWVNGNVAAAGCNGSGSSNSADAIALCGWQLTLDAL 913
FDP + H +CPWVN + G+ A A A GW+ L L
Sbjct: 419 FDPTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTIL 465
>sp|O94506|RSM1_SCHPO mRNA export factor rsm1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsm1 PE=4 SV=1
Length = 296
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 70 LGSSRPSCRPWERGDLLRRLATFKPSNW--FGKPKLASSLACAQRGWMNIDVDRIACESC 127
L +S+ + +PW R + LRRL T++ S W P++ + C GW+ + + C+ C
Sbjct: 31 LKASKCTYKPWSREEFLRRLLTYR-SRWAYVNDPQIG-EINCCLNGWLCESNNILVCDVC 88
Query: 128 A-----ACLSFVSVPNWTPAEV-EDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPP 179
L V N + E+ E + L + H NC WR L +FPP
Sbjct: 89 RNKINLTALQQVDAENDSLNELPEKTKERLEVSLKEEHQDNCLWR-------LHKFPP 139
>sp|C5A4R5|CPGS_THEGJ Cyclic 2,3-diphosphoglycerate synthetase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=cpgS PE=3 SV=1
Length = 438
Score = 33.5 bits (75), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 339 CSLCGATVRILDFLTVPRPA-RFAPNNIDIPDTSKKMGMTRGVSAASGISGWVAADDPEK 397
C L G T R DF+ PRP R + +I + T K++G T +SG+VA
Sbjct: 95 CLLHGVTYRGADFVFKPRPLNRTSKPSIGVIGTGKRVGKT-------AVSGFVA----RT 143
Query: 398 EQTEDRDEVATTDEGKLQQNTEFD---LNLTIGGGLPFTQAGRTAISENVHDADMGRDLM 454
+ R + T G ++ D L +T L ++GR A S++ DA R
Sbjct: 144 LKAITRPVIVTMGRGGPEEPELIDGEKLEITPEFLLRIAESGRHAASDHFEDALTSRVTT 203
Query: 455 IG 456
IG
Sbjct: 204 IG 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,737,630
Number of Sequences: 539616
Number of extensions: 16469671
Number of successful extensions: 36122
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 35145
Number of HSP's gapped (non-prelim): 753
length of query: 960
length of database: 191,569,459
effective HSP length: 127
effective length of query: 833
effective length of database: 123,038,227
effective search space: 102490843091
effective search space used: 102490843091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)