BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046462
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At5g01750
pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At5g01750
Length = 217
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 8/197 (4%)
Query: 1 MSGIAIVDERFCFEEETHLTVHKTSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELV 60
+G +VD ++C + + F++ D G L+ + P D+ V
Sbjct: 22 QAGGVVVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRV 79
Query: 61 LMEASGKCLLTLLRKKPSLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSVVAHVFGEPS 120
L++ SG ++TL K S H RW+ + G + ++ +++V RSS + + + G
Sbjct: 80 LLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFLGHNK 139
Query: 121 EE----YRIEGSFSQRCCTIYNASSSKERVAKIKRKVDPLNNVTLGKDVFLLCLEPGFDG 176
+E +R++GS+ +R C +Y A S VA+ RK + +V LGKD F + + P D
Sbjct: 140 DEKRCDFRVKGSWLERSCVVY-AGESDAIVAQXHRK-HTVQSVFLGKDNFSVTVYPNVDY 197
Query: 177 AFAMGLVLILDQMYGDD 193
AF LV+ILD + +D
Sbjct: 198 AFIASLVVILDDVNRED 214
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 52 DSQPKDELVLMEASGKCLLTLLRKKPSLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSV 111
D KD + LM G+ +LRK W G++ K + + VC++ + GR S
Sbjct: 115 DPALKDSVSLMREGGR---QVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGREST 171
Query: 112 VAHVF--------------GEPSEEYRIEGSFSQRCCTIYNA 139
++ EPS+ RI G +Q C+ NA
Sbjct: 172 STGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNA 213
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 52 DSQPKDELVLMEASGKCLLTLLRKKPSLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSV 111
D KD + LM G+ +LRK W G++ K + + VC++ + GR S
Sbjct: 115 DPALKDSVSLMREGGR---QVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGREST 171
Query: 112 VAHVF--------------GEPSEEYRIEGSFSQRCCTIYNA 139
++ EPS+ RI G +Q C+ NA
Sbjct: 172 STGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNA 213
>pdb|3IXX|G Chain G, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|I Chain I, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXY|G Chain G, The Pseudo-Atomic Structure Of Dengue Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXY|I Chain I, The Pseudo-Atomic Structure Of Dengue Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
Length = 221
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 70 LTLLRKKPSLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSV----VAHVFGEPSEEYRI 125
+T +R+ P W G++G K D +S +S+ GR ++ + R
Sbjct: 34 MTWVRQPPGKALEWLGFIGNKANDYTTEYS---ASVKGRFTISRDDSQSILYLQMSTLRA 90
Query: 126 EGSFSQRCCTIYN--------------ASSSKERVAKIKRKVDPLNNVTLGKDVFLLCLE 171
E + C T+Y A SS + + P+ T G V L CL
Sbjct: 91 EDRATYYCATVYGNYPYFDVWGAGTTVAVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLV 150
Query: 172 PGF 174
G+
Sbjct: 151 KGY 153
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 136 IYNASSSKERVAKIKRKVDPLNNVTLGKDVFLLCLEPGFDGAFAMGLVLILDQMYGDDDD 195
+Y+ +S K K+ +D L+NV G+ + LC G ++YG D
Sbjct: 73 VYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGSTC----EVYGQADT 128
Query: 196 YIMPEVDPTPEDS 208
PTPEDS
Sbjct: 129 L------PTPEDS 135
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 40 GELILRFDSYGPDSQPKDELVLMEAS------GKCLLTLLRKKP-----SLHQRWEGYLG 88
G +++R DSY PD+ D E S G C + + P S WEGYL
Sbjct: 297 GYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLS 356
Query: 89 E 89
+
Sbjct: 357 D 357
>pdb|3VRD|B Chain B, Crystal Structure Of Flavocytochrome C From
Thermochromatium Tepidum
Length = 401
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 156 LNNVTLGKDVFLLCLEPGFDGAFAMGLVLILDQMYGDDDD 195
++N +G D L L G+DG A G+ ++ D G D D
Sbjct: 44 MSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGIDPD 83
>pdb|1FCD|A Chain A, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
pdb|1FCD|B Chain B, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
Length = 401
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 156 LNNVTLGKDVFLLCLEPGFDGAFAMGLVLILDQMYGDDDD 195
L+N +G D L ++ G+DG A G+ ++ D G D D
Sbjct: 44 LSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPD 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,934,388
Number of Sequences: 62578
Number of extensions: 296781
Number of successful extensions: 453
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 8
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)